Query         T0613 NP_949368.1, RHODOPSEUDOMONAS PALUSTRIS CGA009, 287 residues
Match_columns 287
No_of_seqs    212 out of 1728
Neff          5.5 
Searched_HMMs 15564
Date          Mon Jul  5 09:13:56 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0613.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0613.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1jkxa_ c.65.1.1 (A:) Glycinam 100.0       0       0  382.4  25.6  198   89-286     1-200 (209)
  2 d1jkxa_ c.65.1.1 (A:) Glycinam 100.0       0       0  356.5  25.6  197   89-285     1-199 (209)
  3 d1meoa_ c.65.1.1 (A:) Glycinam 100.0       0       0  345.5  25.2  198   89-286     1-200 (205)
  4 d1fmta2 c.65.1.1 (A:1-206) Met 100.0 1.2E-32   8E-37  237.6  19.6  179   86-276     1-192 (206)
  5 d2bw0a2 c.65.1.1 (A:1-203) 10- 100.0 8.4E-33 5.4E-37  238.8  14.9  181   89-276     1-189 (203)
  6 d2blna2 c.65.1.1 (A:1-203) Pol 100.0 5.6E-31 3.6E-35  226.5  18.8  176   89-276     1-186 (203)
  7 d1zgha2 c.65.1.1 (A:1-164) Met  99.9 3.7E-22 2.4E-26  167.2  12.0  134  132-277    19-152 (164)
  8 d1zpva1 d.58.18.7 (A:1-83) UPF  99.7 2.8E-17 1.8E-21  134.4  10.3   79    5-86      2-80  (83)
  9 d1u8sa2 d.58.18.5 (A:88-180) p  99.6 8.7E-16 5.6E-20  124.3  10.3   81    4-85      5-91  (93)
 10 d1u8sa1 d.58.18.5 (A:2-87) put  99.6   5E-15 3.2E-19  119.2   7.6   80    4-87      4-83  (86)
 11 d1y7pa2 d.58.18.12 (A:2-78) Hy  97.5 1.8E-05 1.2E-09   54.9   2.2   65    7-72      3-67  (77)
 12 d1sc6a3 d.58.18.1 (A:327-410)   97.5 0.00012 7.8E-09   49.4   5.8   63    4-73     10-72  (84)
 13 d1ygya3 d.58.18.1 (A:452-529)   97.4 0.00025 1.6E-08   47.3   7.1   66    5-74      3-68  (78)
 14 d2fgca2 d.58.18.6 (A:27-104) A  97.0  0.0012 7.8E-08   42.7   6.9   67    3-71      1-67  (78)
 15 d1sc6a3 d.58.18.1 (A:327-410)   97.0 0.00077 4.9E-08   44.0   5.8   51    4-56     10-60  (84)
 16 d2pc6a2 d.58.18.6 (A:1-77) Ace  96.5  0.0036 2.3E-07   39.5   6.3   65    5-71      2-66  (77)
 17 d2f1fa1 d.58.18.6 (A:2-77) Ace  96.1  0.0086 5.5E-07   37.0   6.4   65    5-71      1-65  (76)
 18 d2f06a2 d.58.18.11 (A:1-70) Hy  95.8   0.014 9.1E-07   35.5   6.3   45    8-54      6-50  (70)
 19 d2f06a1 d.58.18.11 (A:71-141)   95.8   0.011 6.8E-07   36.4   5.6   57    7-71      1-57  (71)
 20 d2hmfa2 d.58.18.10 (A:404-470)  94.2   0.049 3.1E-06   31.9   5.3   60    6-76      2-64  (67)
 21 d1phza1 d.58.18.3 (A:19-115) P  94.1   0.077 4.9E-06   30.6   6.2   77    4-84     15-92  (97)
 22 d2hmfa3 d.58.18.10 (A:304-403)  94.0   0.068 4.4E-06   30.9   5.7   64    4-78     14-80  (100)
 23 d2cdqa2 d.58.18.10 (A:329-419)  93.8    0.12   8E-06   29.1   6.9   35    4-38     12-49  (91)
 24 d2cdqa3 d.58.18.10 (A:420-494)  92.8    0.13 8.3E-06   29.0   5.6   62    5-77      1-64  (75)
 25 d2qmwa2 d.58.18.3 (A:185-264)   90.2    0.45 2.9E-05   25.4   6.1   65    7-75      4-69  (80)
 26 d1f0ka_ c.87.1.2 (A:) Peptidog  89.4     0.8 5.2E-05   23.7   7.7   19  202-220   256-274 (351)
 27 d2d13a1 c.26.2.1 (A:2-227) Hyp  88.3    0.95 6.1E-05   23.2   7.0  133   88-231     3-153 (226)
 28 d1nvmb1 c.2.1.3 (B:1-131,B:287  84.8       1 6.7E-05   23.0   5.3   75   86-172     2-78  (157)
 29 d1zhva2 d.58.18.8 (A:62-127) H  84.4    0.54 3.5E-05   24.9   3.7   34    7-40      4-40  (66)
 30 d1wu2a3 c.57.1.2 (A:181-324) M  72.8     2.5 0.00016   20.4   4.2   82   88-181     2-86  (144)
 31 d1zvpa2 d.58.18.9 (A:68-131) H  71.2     1.8 0.00011   21.4   3.1   32    8-39      8-40  (64)
 32 d2j0wa3 d.58.18.10 (A:386-449)  67.0     2.5 0.00016   20.4   3.1   58    6-76      2-62  (64)
 33 d1ni5a1 c.26.2.5 (A:0-226) tRN  64.2       5 0.00032   18.4   9.5   91   86-176    11-119 (227)
 34 d2j0wa2 d.58.18.10 (A:295-385)  61.5     1.1 7.1E-05   22.8   0.5   35    4-38     13-50  (91)
 35 d1ydwa1 c.2.1.3 (A:6-133,A:305  60.5     5.7 0.00037   18.0   7.1   76  100-184    56-134 (184)
 36 d1h6da1 c.2.1.3 (A:51-212,A:37  57.4     6.5 0.00042   17.6   4.0   64  116-183   101-167 (221)
 37 d2ihta3 c.36.1.9 (A:375-572) C  57.0     3.6 0.00023   19.3   2.5   76   88-170    79-182 (198)
 38 d1ybha3 c.36.1.9 (A:460-667) A  56.5     6.5 0.00042   17.6   3.7   78   87-171    68-180 (208)
 39 d2ji7a3 c.36.1.9 (A:370-552) O  55.5     5.8 0.00037   17.9   3.3   73   89-169    74-172 (183)
 40 d1b74a1 c.78.2.1 (A:1-105) Glu  55.4       7 0.00045   17.4   4.2   91   89-199     1-99  (105)
 41 d1wy5a1 c.26.2.5 (A:1-216) Til  53.9     7.4 0.00047   17.2   7.0   98   87-184    23-144 (216)
 42 d1qv9a_ c.127.1.1 (A:) F420-de  53.7     7.4 0.00048   17.2   7.4   88   78-171    19-118 (282)
 43 d1tzya_ a.22.1.1 (A:) Histone   52.8     1.9 0.00012   21.1   0.5   14  187-200    93-106 (106)
 44 d1u6ka1 c.127.1.1 (A:2-283) F4  51.8     7.9 0.00051   17.0   7.4   88   78-171    19-118 (282)
 45 d1r0ka2 c.2.1.3 (A:3-126,A:265  50.9     8.2 0.00053   16.9   7.7  115   87-218     1-119 (150)
 46 d1v8ba2 c.23.12.3 (A:4-234,A:3  47.8     9.1 0.00058   16.6   5.2   60  113-174    65-133 (313)
 47 d1u35c1 a.22.1.1 (C:814-919) m  46.8     2.7 0.00018   20.1   0.5   14  187-200    92-105 (106)
 48 d1rwua_ d.58.54.1 (A:) Hypothe  44.9      10 0.00065   16.3   6.5   69    5-78     14-83  (87)
 49 d1uh6a_ d.15.1.1 (A:) Ubiquiti  42.9       8 0.00051   17.0   2.4   54  218-276    25-78  (100)
 50 d1vj0a2 c.2.1.1 (A:156-337) Hy  42.9      11 0.00069   16.1   7.3   77   89-172    30-107 (182)
 51 d2ftsa3 c.57.1.2 (A:499-653) G  41.7      11 0.00072   16.0   6.4   85   89-184     1-85  (155)
 52 d1v5oa_ d.15.1.1 (A:) 1700011n  41.0     2.6 0.00017   20.3  -0.3   19  239-257    25-43  (102)
 53 d2nvwa1 c.2.1.3 (A:2-154,A:374  40.1      12 0.00076   15.8   9.6   28  155-183   132-159 (237)
 54 d1wiaa_ d.15.1.1 (A:) Ubiquiti  39.0    0.93   6E-05   23.3  -2.9   41  237-281    19-59  (95)
 55 d1e9yb2 c.1.9.2 (B:132-431,B:4  38.8     8.5 0.00054   16.8   2.0   94   87-181    58-168 (389)
 56 d1rwua_ d.58.54.1 (A:) Hypothe  36.6      13 0.00086   15.5   6.5   68    5-77     14-82  (87)
 57 d2yvta1 d.159.1.6 (A:4-260) Un  34.0      12 0.00078   15.8   2.2   11  136-146    85-95  (257)
 58 d4ubpc2 c.1.9.2 (C:132-434,C:4  32.3     8.8 0.00056   16.7   1.2   94   87-181    59-169 (390)
 59 d2fiqa1 c.1.10.7 (A:1-420) Put  31.6      16   0.001   15.0   7.3   39  103-142     2-43  (420)
 60 d1woqa2 c.55.1.10 (A:140-263)   30.9      17  0.0011   14.9   3.1   48  154-202    64-111 (124)
 61 d7reqb2 c.23.6.1 (B:476-638) M  29.7      17  0.0011   14.7   7.3   88   86-175    33-124 (163)
 62 d1zh8a1 c.2.1.3 (A:4-131,A:276  29.6      17  0.0011   14.7   9.5   71  100-179    57-130 (181)
 63 d1ejxc2 c.1.9.2 (C:1130-1422,C  29.4      12 0.00077   15.8   1.5   93   88-181    59-168 (385)
 64 d2i4ra1 c.149.1.1 (A:4-79) V-t  27.6      19  0.0012   14.5   6.4   66  119-190     1-68  (76)
 65 d1v2ya_ d.15.1.1 (A:) Ubiquiti  27.5      19  0.0012   14.5   2.9   26  237-262    19-44  (105)
 66 d1mvla_ c.34.1.1 (A:) 4'-phosp  27.1      19  0.0012   14.4   4.7   36   88-126     1-38  (182)
 67 d1jyka_ c.68.1.13 (A:) CTP:pho  26.9      19  0.0012   14.4   5.5   70  101-173    36-105 (229)
 68 d1bt0a_ d.15.1.1 (A:) Rub1 {Mo  26.7      19  0.0013   14.4   3.2   38  238-276    13-50  (73)
 69 d1m94a_ d.15.1.1 (A:) Ubiquiti  26.6      20  0.0013   14.4   3.6   38  238-276    14-51  (73)
 70 d1miob_ c.92.2.3 (B:) Nitrogen  26.1      11 0.00072   16.0   0.9   30  115-144   233-264 (457)
 71 d1tq8a_ c.26.2.4 (A:) Hypothet  25.2      21  0.0013   14.2   8.6   62  132-196    77-147 (147)
 72 d1wz3a1 d.15.1.7 (A:10-93) Aut  24.9      21  0.0013   14.2   4.0   49  220-281     3-51  (84)
 73 d7reqa2 c.23.6.1 (A:561-728) M  24.6      21  0.0014   14.1  10.0  104   61-173    19-125 (168)
 74 d2a0ua1 c.124.1.5 (A:10-383) I  23.9      22  0.0014   14.1   7.7   65   96-172   184-254 (374)
 75 d1ozha3 c.36.1.9 (A:367-558) C  23.1      23  0.0015   14.0   3.5   77   88-171    71-173 (192)
 76 d1gtfa_ b.82.5.1 (A:) Trp RNA-  22.4     9.1 0.00058   16.6  -0.2   30  209-238     7-42  (69)
 77 d1t9ka_ c.124.1.5 (A:) Probabl  22.1      24  0.0015   13.8   7.1   63   98-172   162-230 (340)
 78 d1uz5a3 c.57.1.2 (A:181-328) M  22.0      24  0.0015   13.8   5.5   87   89-186     1-91  (148)
 79 d2djia3 c.36.1.9 (A:364-592) P  21.8      24  0.0015   13.8   1.9   39   88-129    69-110 (229)
 80 d1gtfa_ b.82.5.1 (A:) Trp RNA-  21.7     9.6 0.00062   16.5  -0.2   30  209-238     7-42  (70)
 81 d1li4a2 c.23.12.3 (A:3-189,A:3  21.5      24  0.0016   13.8   5.4   78  114-204    68-151 (267)
 82 d1ccwa_ c.23.6.1 (A:) Glutamat  20.6      25  0.0016   13.6   7.8   37    1-37      1-38  (137)
 83 d1z2ma2 d.15.1.1 (A:79-154) In  20.5      25  0.0016   13.6   3.2   37  239-276    17-53  (76)

No 1  
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} SCOP: d1cdda_ d2gara_ d1mejb_ d1njsa_ d1meoa_
Probab=100.00  E-value=0  Score=382.35  Aligned_cols=198  Identities=24%  Similarity=0.365  Sum_probs=190.4

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHH-HHHHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHCCC
Q ss_conf             4279998067877799999996689994389997288678-9999995699599828888-8878999999999984489
Q T0613            89 RKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRE-TFSGFDFGDIPFYHFPVNK-DTRRQQEAAITALIAQTHT  166 (287)
Q Consensus        89 ~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~-~~~~a~~~~Ip~~~~~~~~-~~r~~~e~~l~~~l~~~~~  166 (287)
                      +|+|||+||+||||++|+++++.++++++|++|+||++++ +.++|++++||+++++.+. .+|+.++.++++.++++++
T Consensus         1 mkiailiSG~Gsnl~~Ll~~~~~~~~~~~I~~Vitn~~~~~~l~~a~~~~Ip~~~i~~~~~~~~~~~~~~~~~~l~~~~~   80 (209)
T d1jkxa_           1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAP   80 (209)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCC
T ss_pred             CEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf             96899983586038999999856899717999984386453000121138702577520345324565577888753101


Q ss_pred             CEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf             99998122101797899841799898330427876663169999981790855689987078887976400157538898
Q T0613           167 DLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRD  246 (287)
Q Consensus       167 DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V~~~d  246 (287)
                      |++|++|||+|||++|++.|++++||+||||||+|+|.+|++||+.+|++.+|||+|+|++++|+||||.|..++|.++|
T Consensus        81 dliv~~g~~~ii~~~~l~~~~~~~iN~HpslLP~~rG~~p~~~ai~~g~~~~G~Tih~v~~~iD~G~Ii~q~~~~i~~~d  160 (209)
T d1jkxa_          81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGD  160 (209)
T ss_dssp             SEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTSCCSSCHHHHHHHTTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTC
T ss_pred             CEEEEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCC
T ss_conf             13466632221455222536665032164333467665422011105873012167730345688845668888518898


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEC
Q ss_conf             9899999999988999999999885983898267489844
Q T0613           247 TPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFT  286 (287)
Q Consensus       247 t~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~~ktvvf~  286 (287)
                      |+++|.+|+++.|+.+|++++++++++|+.++++|++++.
T Consensus       161 t~~~L~~k~~~~e~~l~~~~i~~~~~~~i~~~~~~~~~~~  200 (209)
T d1jkxa_         161 SEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLDG  200 (209)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEETTEEEETT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEECC
T ss_conf             9899999999988999999999985691588568789867


No 2  
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=356.50  Aligned_cols=197  Identities=24%  Similarity=0.364  Sum_probs=187.9

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHH-HHHHHHHCCCCEEECCCC-CCCHHHHHHHHHHHHHHCCC
Q ss_conf             4279998067877799999996689994389997288678-999999569959982888-88878999999999984489
Q T0613            89 RKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRE-TFSGFDFGDIPFYHFPVN-KDTRRQQEAAITALIAQTHT  166 (287)
Q Consensus        89 ~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~-~~~~a~~~~Ip~~~~~~~-~~~r~~~e~~l~~~l~~~~~  166 (287)
                      +|||||+||+||||++|+++++.|+++++|++|+||++++ +..+++..++|....... ..++..+|.++.+.++++++
T Consensus         1 MkIaVl~SG~GSnL~aLl~a~~~~~l~~~I~~Visn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (209)
T d1jkxa_           1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAP   80 (209)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             98999981682779999999871899978999995798753120120134320232001234433348999999986099


Q ss_pred             CEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf             99998122101797899841799898330427876663169999981790855689987078887976400157538898
Q T0613           167 DLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRD  246 (287)
Q Consensus       167 DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V~~~d  246 (287)
                      |++|++|||+|||++|++.|++++||+||||||.|+|++|++||+.+|+|.+|||+|+|++++|+||||.|..++|.++|
T Consensus        81 Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~~rG~~p~~~~i~~g~~~~G~t~h~~~~~~D~G~Ii~q~~~~i~~~d  160 (209)
T d1jkxa_          81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGD  160 (209)
T ss_dssp             SEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTSCCSSCHHHHHHHTTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTC
T ss_pred             CEEEEEEEEEECCHHHHCCCCCCEEEECCCHHCCCCCCCCHHHHHHCCCEEECCEEEEECCCCCCCCEEEEEEECCCCCC
T ss_conf             88998305686170553023367797077311036776754679987981103338984577886337567897379997


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEE
Q ss_conf             989999999998899999999988598389826748984
Q T0613           247 TPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVF  285 (287)
Q Consensus       247 t~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~~ktvvf  285 (287)
                      |+++|.+|++++|+.+|++++++++++|+.++++++.++
T Consensus       161 ~~~~l~~k~~~~e~~l~~~~i~~i~~~~i~~~~~~~~~~  199 (209)
T d1jkxa_         161 SEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLD  199 (209)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEETTEEEET
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEC
T ss_conf             999999999999999999999999809968859988999


No 3  
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=0  Score=345.54  Aligned_cols=198  Identities=26%  Similarity=0.406  Sum_probs=187.9

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHH-HHHHHHCCCCEEECCCC-CCCHHHHHHHHHHHHHHCCC
Q ss_conf             42799980678777999999966899943899972886789-99999569959982888-88878999999999984489
Q T0613            89 RKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRET-FSGFDFGDIPFYHFPVN-KDTRRQQEAAITALIAQTHT  166 (287)
Q Consensus        89 ~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~~-~~~a~~~~Ip~~~~~~~-~~~r~~~e~~l~~~l~~~~~  166 (287)
                      .|+|||+||+||||++|+++++.|+++++|++|+||++++. ..+++..++|+...... ...+..++.++.+.++++++
T Consensus         1 ~ri~vl~SG~Gsnl~aLl~~~~~~~l~~~I~~Vitn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~   80 (205)
T d1meoa_           1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSI   80 (205)
T ss_dssp             CEEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             98999983781759999999766999978999997873323031133322222112444210023578999999850165


Q ss_pred             CEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf             99998122101797899841799898330427876663169999981790855689987078887976400157538898
Q T0613           167 DLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRD  246 (287)
Q Consensus       167 DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V~~~d  246 (287)
                      |++|+||||+|+|++|++.|++++||+||||||.|+|++|++||+.+|.+.+|+|+|+|++++|+||||.|..++|.++|
T Consensus        81 Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~~rG~~~~~~ai~~g~~~~G~tih~v~~~iD~G~Ii~q~~~~I~~~d  160 (205)
T d1meoa_          81 DIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGD  160 (205)
T ss_dssp             CEEEEESCCSCCCHHHHHHTTTSEEEEESSSTTSSCSSCHHHHHHHHTCSEEEEEEEECCC---CCCEEEEEEEECCTTC
T ss_pred             CEEEEECHHCCCCHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCC
T ss_conf             43342002200687888732577352376422111100048899863986510247863477897747689997799997


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEC
Q ss_conf             9899999999988999999999885983898267489844
Q T0613           247 TPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVFT  286 (287)
Q Consensus       247 t~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~~ktvvf~  286 (287)
                      |.++|.+|++++|+.+|+++++.+++|++....+..|.|.
T Consensus       161 t~~~L~~k~~~~~~~l~~~~l~~i~~g~i~~~~~~~i~~~  200 (205)
T d1meoa_         161 TVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV  200 (205)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTSEEECTTSSEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEE
T ss_conf             9999999999999999999999998599478899769930


No 4  
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=1.2e-32  Score=237.63  Aligned_cols=179  Identities=20%  Similarity=0.235  Sum_probs=151.7

Q ss_pred             CCCCCEEEEEECCC--CCHHHHHHHHHCCCCCCEEEEEEECCHH-----------HHHHHHHHCCCCEEECCCCCCCHHH
Q ss_conf             56342799980678--7779999999668999438999728867-----------8999999569959982888888789
Q T0613            86 ETRRKVMLLVSQSD--HCLADILYRWRVGDLHMIPTAIVSNHPR-----------ETFSGFDFGDIPFYHFPVNKDTRRQ  152 (287)
Q Consensus        86 ~~~~riavlvSg~g--~~l~all~~~~~g~L~~ei~~Visn~~~-----------~~~~~a~~~~Ip~~~~~~~~~~r~~  152 (287)
                      +.++||+++.|+.-  .+|++|+..      ..+|++|++..+.           .....+...++|+......  +   
T Consensus         1 ~~~mKI~f~G~~~~~~~~L~~L~~~------~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---   69 (206)
T d1fmta2           1 SESLRIIFAGTPDFAARHLDALLSS------GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSL--R---   69 (206)
T ss_dssp             CCCCEEEEEECSHHHHHHHHHHHHT------TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCS--C---
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC------CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC--C---
T ss_conf             9974899988988999999999968------9977999969983013676223362321010037653222222--2---


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCC
Q ss_conf             99999999984489999981221017978998417998983304278766631699999817908556899870788879
Q T0613           153 QEAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEG  232 (287)
Q Consensus       153 ~e~~l~~~l~~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~G  232 (287)
                       +....+.++.+++|+++++|||+|+++++++.++.++||+|||+||.|+|.+|+.||+.+|.+.+|+|+|+|++++|+|
T Consensus        70 -~~~~~~~~~~~~~d~~v~~~~~~ii~~~il~~~k~g~iN~Hps~LP~yRG~~pi~wai~nge~~~GvT~h~i~~~iD~G  148 (206)
T d1fmta2          70 -PQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTG  148 (206)
T ss_dssp             -SHHHHHHHHHTTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCS
T ss_pred             -CHHHHHHHHHHCCEEEEEECCCCCCCHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCEECEEEEEECCCCCHH
T ss_conf             -1146777764133278864122136654675387774525823567652000132588749823530688861555757


Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf             76400157538898989999999998899999999988598389
Q T0613           233 PIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI  276 (287)
Q Consensus       233 pII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~  276 (287)
                      |||.|..++|.++||.++|.+|...++..++.++++.+.+++..
T Consensus       149 ~Ii~q~~~~i~~~dt~~~l~~k~~~~~~~l~~~~i~~i~~~~~~  192 (206)
T d1fmta2         149 DMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTAK  192 (206)
T ss_dssp             CEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             76430013443356599999999999999999999999849984


No 5  
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.4e-33  Score=238.77  Aligned_cols=181  Identities=15%  Similarity=0.125  Sum_probs=149.6

Q ss_pred             CCEEEEEECCC--CCHHHHHHHHHCCCCCCEEEEEEECCH-----HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             42799980678--777999999966899943899972886-----78999999569959982888888789999999999
Q T0613            89 RKVMLLVSQSD--HCLADILYRWRVGDLHMIPTAIVSNHP-----RETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALI  161 (287)
Q Consensus        89 ~riavlvSg~g--~~l~all~~~~~g~L~~ei~~Visn~~-----~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l  161 (287)
                      +||+++.|..-  .+|+.|+.   +   +.+|++|++..+     ......|+.++||.+.... ..++...+.++++.+
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~---~---~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~-~~~~~~~~~~~~~~l   73 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRK---E---GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSR-WRAKGQALPDVVAKY   73 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHH---T---TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSC-CEETTEECHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHH---C---CCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCC-CCCCCCCCHHHHHHH
T ss_conf             989998588999999999998---8---996899982898676777234447761986211321-111121569999999


Q ss_pred             HHCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEEEEE
Q ss_conf             84489999981221017978998417998983304278766631699999817908556899870788879764001575
Q T0613           162 AQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVER  241 (287)
Q Consensus       162 ~~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~  241 (287)
                      ++.++|++|++||++||++++++.++.+++|+|||+||.|+|++|++||+.+|.+.+|+|+|++++++|+||||.|+.++
T Consensus        74 ~~~~~Dliv~~~~~~ii~~~~l~~~~~g~iN~H~slLP~yrG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii~q~~~~  153 (203)
T d2bw0a2          74 QALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECE  153 (203)
T ss_dssp             HTTCCSEEEESSCSSCCCHHHHTCSTTCEEEEESSCTTTTBSSCHHHHHHHTTCSEEEEEEEECCSSSSCSCEEEEEEEE
T ss_pred             HHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCHHHEEECCC
T ss_conf             97199836985110110023221115676665321331125643033320134456674368714445644122041246


Q ss_pred             CCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHCCEEE
Q ss_conf             388989899999999-98899999999988598389
Q T0613           242 ISHRDTPADLVRKGR-DIERRVLSRALHYHLDDRVI  276 (287)
Q Consensus       242 V~~~dt~e~L~~r~~-~~E~~~l~~ai~~~~e~rv~  276 (287)
                      |.++||.++|..|.. +....++.++++.+.++++.
T Consensus       154 i~~~dt~~~l~~k~l~~~~~~~~~~~l~~i~~g~~~  189 (203)
T d2bw0a2         154 VLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKAP  189 (203)
T ss_dssp             CCTTCCHHHHHHHTTTHHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             898752879999999999999999999999849997


No 6  
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.98  E-value=5.6e-31  Score=226.49  Aligned_cols=176  Identities=20%  Similarity=0.244  Sum_probs=152.2

Q ss_pred             CCEEEEEECC-C-CCHHHHHHHHHCCCCCCEEEEEEECCHHH--------HHHHHHHCCCCEEECCCCCCCHHHHHHHHH
Q ss_conf             4279998067-8-77799999996689994389997288678--------999999569959982888888789999999
Q T0613            89 RKVMLLVSQS-D-HCLADILYRWRVGDLHMIPTAIVSNHPRE--------TFSGFDFGDIPFYHFPVNKDTRRQQEAAIT  158 (287)
Q Consensus        89 ~riavlvSg~-g-~~l~all~~~~~g~L~~ei~~Visn~~~~--------~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~  158 (287)
                      +|++++.++. | .||++|+++      +.+|++|+|..++.        -...|+.++||++...  .-+    +.++.
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~------g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~--~~~----~~~~~   68 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAA------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPD--NVN----HPLWV   68 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT------TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCS--CCC----SHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHC------CCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEECC--CCC----CHHHH
T ss_conf             9399995577899999999978------99889998489998766665878999998599622112--121----01234


Q ss_pred             HHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEEEEECCCCCCCEEEEE
Q ss_conf             99984489999981221017978998417998983304278766631699999817908556899870788879764001
Q T0613           159 ALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQD  238 (287)
Q Consensus       159 ~~l~~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~  238 (287)
                      +.+++.++|+++.+||++|+++++++.++..++|+|||+||.|+|.+|..||+.+|.+.+|+|+|++++++|+|||+.|.
T Consensus        69 ~~i~~~~~Dlii~~g~~~ii~~~il~~~~~~~iN~H~slLP~yrG~~p~~wai~~g~~~~G~Tih~i~~~iD~G~Il~q~  148 (203)
T d2blna2          69 ERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQL  148 (203)
T ss_dssp             HHHHHTCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSCTTTTEESCHHHHHHHTTCSEEEEEEEECCSSTTCSCEEEEE
T ss_pred             HHHHHHCCCCEEEEECCCCHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEC
T ss_conf             45432033514654111000001101237789887552220554432344323034455432047753157776100353


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf             57538898989999999998899999999988598389
Q T0613           239 VERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI  276 (287)
Q Consensus       239 ~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~  276 (287)
                      .+++.++||.++|..|....+..++.++++.+..+++.
T Consensus       149 ~~~i~~~~t~~~l~~k~~~~~~~l~~~~l~~i~~g~~~  186 (203)
T d2blna2         149 RIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNIL  186 (203)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             43342023589999999999999999999999869985


No 7  
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]}
Probab=99.88  E-value=3.7e-22  Score=167.23  Aligned_cols=134  Identities=14%  Similarity=0.249  Sum_probs=107.3

Q ss_pred             HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHH
Q ss_conf             99956995998288888878999999999984489999981221017978998417998983304278766631699999
Q T0613           132 GFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAF  211 (287)
Q Consensus       132 ~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~G~~~~~~a~  211 (287)
                      ..+..+.++.+.-...  +.   ....+.+...++|+++++||++|++++++.++  +++|+|||+||.|+|.+|..||+
T Consensus        19 ~~k~~~~~~~~~~~~n--~~---~~~~~~i~~~~~D~ii~~g~~~ii~~~il~~~--~~in~H~s~LP~yRG~~p~~wai   91 (164)
T d1zgha2          19 FKKENESKYNTTIITN--KD---ELTFEKVKLINPEYILFPHWSWIIPKEIFENF--TCVVFHMTDLPFGRGGSPLQNLI   91 (164)
T ss_dssp             HHHHTTTTEEEEEECS--GG---GCCHHHHHHHCCSEEEESSCCSCCCHHHHTTS--CEEEEESSCTTTTEESCHHHHHH
T ss_pred             HHHHHCCCCCEEEECC--HH---HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHC--CCCCCCCCCHHCCCCCCCCCCCC
T ss_conf             9997057663566438--12---88999999609999999370230389999409--98208978012442335333100


Q ss_pred             HCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
Q ss_conf             817908556899870788879764001575388989899999999988999999999885983898
Q T0613           212 DRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVIL  277 (287)
Q Consensus       212 ~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v  277 (287)
                      .+|.+.+|+|+|++++++|+||||.|..+++.  ||.+++..|.   ...++.+.++.+++++...
T Consensus        92 ~~~~~~~Gvtih~~~~~iD~G~Ii~q~~~~i~--~~~~~~~~~~---~~~~~~~~i~~i~~~~~~~  152 (164)
T d1zgha2          92 ERGIKKTKISAIKVDGGIDTGDIFFKRDLDLY--GTAEEIFMRA---SKIIFNDMIPELLTKRPVP  152 (164)
T ss_dssp             HTTCCEEEEEEEECCSSSSCSCEEEEEEEECC--SCHHHHHHHH---HHHHHHTHHHHHHHHCCCC
T ss_pred             CCCCCCCCCEEEEECCCCCCCCEEEEEEECCC--CCHHHHHHHH---HHHHHHHHHHHHHCCCCEE
T ss_conf             12335542036774067886778999997789--9999999999---9999999999998699811


No 8  
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.71  E-value=2.8e-17  Score=134.39  Aligned_cols=79  Identities=24%  Similarity=0.297  Sum_probs=72.9

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             08999984999746999999999759848771110245657689999996287778989999999999987252010001
Q T0613             5 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRD   84 (287)
Q Consensus         5 ~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i~i~~   84 (287)
                      ++|||++|||||||||+||++|+++|+||+|++|++  .++.|+|++.++.+. ..+.++|+++|.+++++++|+|+++.
T Consensus         2 k~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~--~~~~f~~~~~v~~~~-~~~~~~l~~~l~~la~~l~l~i~i~~   78 (83)
T d1zpva1           2 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTV--LDEYFTMMAVVSSDE-KQDFTYLRNEFEAFGQTLNVKINIQS   78 (83)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEESS-CCCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEE--ECCEEEEEEEEEEEC-CCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             499999958988799999999997898399978598--379899999999845-89999999999999998496999988


Q ss_pred             CC
Q ss_conf             35
Q T0613            85 RE   86 (287)
Q Consensus        85 ~~   86 (287)
                      .+
T Consensus        79 ~d   80 (83)
T d1zpva1          79 AA   80 (83)
T ss_dssp             GG
T ss_pred             HH
T ss_conf             88


No 9  
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Probab=99.64  E-value=8.7e-16  Score=124.34  Aligned_cols=81  Identities=10%  Similarity=0.182  Sum_probs=72.0

Q ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEE------CCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             7089999849997469999999997598487711102------4565768999999628777898999999999998725
Q T0613             4 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYN------DTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFT   77 (287)
Q Consensus         4 ~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~------d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~   77 (287)
                      .++-+++.||||||||++||++|+++|+||.+++|++      +...++|+||+.++.+. ..+.++|+++|.+++++++
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~-~~~~~~l~~~l~~l~~~l~   83 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDALCTALD   83 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEEECCC-CCCHHHHHHHHHHHHHHCE
T ss_conf             689999997998998999999999869980533212324567866676589999997586-4358999999999998810


Q ss_pred             CCHHHCCC
Q ss_conf             20100013
Q T0613            78 MGWHMRDR   85 (287)
Q Consensus        78 ~~i~i~~~   85 (287)
                      |+|+++.-
T Consensus        84 v~~si~~i   91 (93)
T d1u8sa2          84 VQGSLNFI   91 (93)
T ss_dssp             CEEEEEEE
T ss_pred             EEEEEEEE
T ss_conf             08999984


No 10 
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Probab=99.55  E-value=5e-15  Score=119.22  Aligned_cols=80  Identities=18%  Similarity=0.296  Sum_probs=72.3

Q ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHC
Q ss_conf             70899998499974699999999975984877111024565768999999628777898999999999998725201000
Q T0613             4 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMR   83 (287)
Q Consensus         4 ~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i~i~   83 (287)
                      ++++||+.|||||||||+||++|+++||||+|++|++  ..+.|.|.+.++++..  +.++|+++|++++++++++|+++
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~L~~l~~~l~l~i~~~   79 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM--FGKEFTLLMLISGSPS--NITRVETTLPLLGQQHDLITMMK   79 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEECHH--HHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEE--ECCEEEEEEEEECCCC--CHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             4899999938987199999999998797699967499--7891599999986850--19999999999888709989999


Q ss_pred             CCCC
Q ss_conf             1356
Q T0613            84 DRET   87 (287)
Q Consensus        84 ~~~~   87 (287)
                      ...+
T Consensus        80 ~~~~   83 (86)
T d1u8sa1          80 RTSP   83 (86)
T ss_dssp             EECC
T ss_pred             ECCC
T ss_conf             8588


No 11 
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=97.53  E-value=1.8e-05  Score=54.94  Aligned_cols=65  Identities=15%  Similarity=0.199  Sum_probs=45.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             999984999746999999999759848771110245657689999996287778989999999999
Q T0613             7 VLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVI   72 (287)
Q Consensus         7 VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~l   72 (287)
                      -|.+.|.||+|+.+.|++.++++|+||..++|+. +.+|.....+.++.+....+++.+-+++..+
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~-~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l   67 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFL-IKHGEHEGKALIYFEIEGGDFEKILERVKTF   67 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEE-CCSSTTTTEEEEEEEECSSCHHHHHHHHHTC
T ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC-CCCCEEEEEEEEEEECCCCCHHHHHHHHHCC
T ss_conf             5999995577769999999987699968888531-6788179999999975864499999998769


No 12 
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} SCOP: d2p9ca3 d2p9ga3
Probab=97.47  E-value=0.00012  Score=49.39  Aligned_cols=63  Identities=16%  Similarity=0.252  Sum_probs=43.7

Q ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             7089999849997469999999997598487711102456576899999962877789899999999999
Q T0613             4 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIA   73 (287)
Q Consensus         4 ~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la   73 (287)
                      ..+.|++.-.|+||++++||+.|+++|+||.+..+-.....+  ...+.++.+.     +..++.++++.
T Consensus        10 ~~~rl~i~~~d~PGvla~It~il~~~~iNI~~~~~~~~~~~~--~~ii~i~vd~-----~~~~~~l~~l~   72 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMG--YVVIDIEADE-----DVAEKALQAMK   72 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEE--EEEEEEECCH-----HHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEECCCCCCC--EEEEEEECCC-----CCHHHHHHHHH
T ss_conf             996789986587976899999987517852231003467762--5899873276-----01689999985


No 13 
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.44  E-value=0.00025  Score=47.28  Aligned_cols=66  Identities=24%  Similarity=0.323  Sum_probs=49.7

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             0899998499974699999999975984877111024565768999999628777898999999999998
Q T0613             5 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAA   74 (287)
Q Consensus         5 ~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~   74 (287)
                      -+.|.+.-.|+||++++|++.|+++|+||.......+...|.-.|.+.+|.+   .+ +++.+++.++-.
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~---~~-~~vl~~I~~~~~   68 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD---VP-DDVRTAIAAAVD   68 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC---CC-HHHHHHHHHHHT
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEEEECCCCCEEEEEEECCCC---CC-HHHHHHHHCCCC
T ss_conf             1699999679699799999999864969324133005789768999993777---66-999999972779


No 14 
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit,  IlvH {Thermotoga maritima [TaxId: 2336]}
Probab=97.01  E-value=0.0012  Score=42.69  Aligned_cols=67  Identities=10%  Similarity=0.186  Sum_probs=52.5

Q ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             970899998499974699999999975984877111024565768999999628777898999999999
Q T0613             3 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGV   71 (287)
Q Consensus         3 ~~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~   71 (287)
                      +++++|++.-.|+||+.++||+.++.+|.||..++--.+...|.--|.+.++.++.  ..+++.+-+++
T Consensus         1 mk~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~--~i~qi~kQl~K   67 (78)
T d2fgca2           1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDK--TIEQIEKQAYK   67 (78)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTT--HHHHHHHHHTT
T ss_pred             CCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCHH--HHHHHHHHHHC
T ss_conf             95699999996777699999999861785547889821379984899999984989--99999999857


No 15 
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=97.00  E-value=0.00077  Score=44.01  Aligned_cols=51  Identities=18%  Similarity=0.210  Sum_probs=37.8

Q ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECC
Q ss_conf             70899998499974699999999975984877111024565768999999628
Q T0613             4 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAA   56 (287)
Q Consensus         4 ~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~   56 (287)
                      ....|++.=.|+||++++|++.|+++|+||.+......  .+.-...|.++.+
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~--~~~~~a~~~i~~D   60 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTS--AQMGYVVIDIEAD   60 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEEC--SSEEEEEEEEECC
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHCCCCC--CCCCEEEEEEECC
T ss_conf             88389999679699899999999973999899624457--8774899999788


No 16 
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,  IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=96.52  E-value=0.0036  Score=39.55  Aligned_cols=65  Identities=17%  Similarity=0.204  Sum_probs=49.6

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             0899998499974699999999975984877111024565768999999628777898999999999
Q T0613             5 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGV   71 (287)
Q Consensus         5 ~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~   71 (287)
                      +++|.+.-.|+||+.++||+.++.+|.||..++---+...|..-|.+.++.++.  ..+++.+-+.+
T Consensus         2 k~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~--~i~qi~kQL~K   66 (77)
T d2pc6a2           2 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDE--IVEQITKQLNK   66 (77)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHH--HHHHHHHHHHH
T ss_pred             CEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCHH--HHHHHHHHHHC
T ss_conf             079999997785499999999860685468899742589983899999977888--99999999857


No 17 
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit,  IlvH {Escherichia coli [TaxId: 562]}
Probab=96.11  E-value=0.0086  Score=36.96  Aligned_cols=65  Identities=14%  Similarity=0.127  Sum_probs=45.0

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             0899998499974699999999975984877111024565768999999628777898999999999
Q T0613             5 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGV   71 (287)
Q Consensus         5 ~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~   71 (287)
                      +.+|++.-.|+||+.++||+.++.+|.||..++--.+...+.--|.+.++.++  ...+++.+-+++
T Consensus         1 khtlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~--~~i~qi~kQL~K   65 (76)
T d2f1fa1           1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDE--KVLEQIEKQLHK   65 (76)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCH--HHHHHHHHHHHH
T ss_pred             CEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCH--HHHHHHHHHHHC
T ss_conf             97999999777759999999987268556788970457998129999997888--899999999857


No 18 
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=95.79  E-value=0.014  Score=35.52  Aligned_cols=45  Identities=16%  Similarity=0.276  Sum_probs=37.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEE
Q ss_conf             99984999746999999999759848771110245657689999996
Q T0613             8 LTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFN   54 (287)
Q Consensus         8 LTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~   54 (287)
                      |++--.||||..++|++.|+++|+||..++.+.+...+.  .|+.++
T Consensus         6 isV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i--~Riiv~   50 (70)
T d2f06a2           6 LSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGI--LRGIVS   50 (70)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEEES
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCE--EEEEEC
T ss_conf             999983787679999999987897789999762588988--999987


No 19 
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=95.78  E-value=0.011  Score=36.37  Aligned_cols=57  Identities=18%  Similarity=0.239  Sum_probs=42.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             99998499974699999999975984877111024565768999999628777898999999999
Q T0613             7 VLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGV   71 (287)
Q Consensus         7 VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~   71 (287)
                      ||.+.-||+||--+++++.|.++|+||....-|.+...+  .+++.++      +.+.-.+.|.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~--~~vl~vd------d~~~a~~~L~~   57 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVA--NVVIRPS------NMDKCIEVLKE   57 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEE--EEEEEES------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCE--EEEEEEC------CHHHHHHHHHH
T ss_conf             989995698248999999998789878999988479947--9999979------99999999998


No 20 
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=94.17  E-value=0.049  Score=31.88  Aligned_cols=60  Identities=22%  Similarity=0.238  Sum_probs=40.8

Q ss_pred             EEEEEECC---CCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89999849---997469999999997598487711102456576899999962877789899999999999872
Q T0613             6 YVLTLSCP---DRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKF   76 (287)
Q Consensus         6 ~VLTv~gp---Dr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~   76 (287)
                      .+++++|.   +++|+.+++.+.|+++|+||.=++|-..  +-.  ....++       .+...++.+.+-+.|
T Consensus         2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~S--e~~--Is~~V~-------~~d~~~Av~~Lh~~F   64 (67)
T d2hmfa2           2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSS--EVN--ISFVID-------EKDLLNCVRKLHEKF   64 (67)
T ss_dssp             EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSC--SSE--EEEEEE-------GGGHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHEEECCC--CCE--EEEEEE-------HHHHHHHHHHHHHHH
T ss_conf             899998589888823999999999986998677453486--024--999980-------899999999999998


No 21 
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=94.11  E-value=0.077  Score=30.57  Aligned_cols=77  Identities=12%  Similarity=0.079  Sum_probs=52.4

Q ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             7089999849997469999999997598487711102456-576899999962877789899999999999872520100
Q T0613             4 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTE-SGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHM   82 (287)
Q Consensus         4 ~~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~-~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~~i~i   82 (287)
                      ++.-|.+..+|+||-.+.+-+.++++|+|+..+.-.-... .+.+.  --+++++.  .-+.++.+++.+..+.+..+++
T Consensus        15 ~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~--F~id~eg~--~~~~i~~~l~~L~~~~~~~v~~   90 (97)
T d1phza1          15 GAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYE--FFTYLDKR--TKPVLGSIIKSLRNDIGATVHE   90 (97)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEE--EEECBCGG--GHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEE--EEEECCCC--CHHHHHHHHHHHHHHHCCEEEE
T ss_conf             8089999969978789999999998798789998131689994499--99984468--8499999999999863827899


Q ss_pred             CC
Q ss_conf             01
Q T0613            83 RD   84 (287)
Q Consensus        83 ~~   84 (287)
                      -.
T Consensus        91 ls   92 (97)
T d1phza1          91 LS   92 (97)
T ss_dssp             EE
T ss_pred             CC
T ss_conf             54


No 22 
>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=93.97  E-value=0.068  Score=30.92  Aligned_cols=64  Identities=11%  Similarity=0.142  Sum_probs=44.5

Q ss_pred             CEEEEEEEC---CCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             708999984---999746999999999759848771110245657689999996287778989999999999987252
Q T0613             4 HQYVLTLSC---PDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTM   78 (287)
Q Consensus         4 ~~~VLTv~g---pDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~~   78 (287)
                      +-..+++.|   ++++|+.+++.+.|+++|+||.=++|-.. ..     .+.|-.+.     +.+.++...+-++|+.
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~S-e~-----~Isf~V~~-----~d~~~a~~~L~~~f~~   80 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSS-ET-----NISLVVSE-----EDVDKALKALKREFGD   80 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCT-TC-----CEEEEECS-----TTHHHHHHHHHHHHCC
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHEECCCC-CC-----EEEEEEEH-----HHHHHHHHHHHHHHHH
T ss_conf             98999997789789854689999999885999889332677-64-----59999848-----9999999999999986


No 23 
>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=93.84  E-value=0.12  Score=29.15  Aligned_cols=35  Identities=14%  Similarity=0.219  Sum_probs=31.7

Q ss_pred             CEEEEEEECC---CCCCHHHHHHHHHHHCCCCEEECCC
Q ss_conf             7089999849---9974699999999975984877111
Q T0613             4 HQYVLTLSCP---DRAGIVSAVSTFLFENGQNILDAQQ   38 (287)
Q Consensus         4 ~~~VLTv~gp---Dr~GIVA~Vt~~Lae~g~NI~disQ   38 (287)
                      +-..+++.|+   ++||+.+++.+.|+++|+||.-++|
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~   49 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT   49 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             98999998589888723999999999985992799980


No 24 
>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=92.82  E-value=0.13  Score=29.04  Aligned_cols=62  Identities=13%  Similarity=0.140  Sum_probs=44.6

Q ss_pred             EEEEEEEC--CCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             08999984--99974699999999975984877111024565768999999628777898999999999998725
Q T0613             5 QYVLTLSC--PDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFT   77 (287)
Q Consensus         5 ~~VLTv~g--pDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~~   77 (287)
                      +.+++++|  .+++|+.|++.+.|++.|+||.=++|-.  .+-.  +...+       +.+...++...+.+.|-
T Consensus         1 ~a~IsvVG~~~~~~Giaarif~aL~~~~InV~mIsqg~--se~~--Is~vV-------~~~d~~~Av~~Lh~~f~   64 (75)
T d2cdqa3           1 RAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGA--SKVN--ISFIV-------NEAEAEGCVQALHKSFF   64 (75)
T ss_dssp             EEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECT--TCSE--EEEEE-------EHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC--CCEE--EEEEE-------EHHHHHHHHHHHHHHHH
T ss_conf             96999978999871399999999998699469887276--4167--99999-------08999999999999995


No 25 
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=90.16  E-value=0.45  Score=25.40  Aligned_cols=65  Identities=14%  Similarity=0.162  Sum_probs=43.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECC-CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             999984999746999999999759848771110245-657689999996287778989999999999987
Q T0613             7 VLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDT-ESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAK   75 (287)
Q Consensus         7 VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~-~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~   75 (287)
                      .+.+.-.|+||-.+++-+.++++|+|++.+.-.-.. ..+.+.-.+.++..   .+ +.++++++++.+.
T Consensus         4 ~~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~---~~-~~~~~~l~~L~~~   69 (80)
T d2qmwa2           4 FLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSA---IT-TDIKKVIAILETL   69 (80)
T ss_dssp             EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCC---SC-HHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEECC---CC-HHHHHHHHHHHHH
T ss_conf             999867998878999999999879878999956428998569999998548---86-8999999999983


No 26 
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Probab=89.36  E-value=0.8  Score=23.71  Aligned_cols=19  Identities=16%  Similarity=0.139  Sum_probs=13.9

Q ss_pred             CCCCHHHHHHHCCCEEEEE
Q ss_conf             6631699999817908556
Q T0613           202 KGAKPYHQAFDRGVKLIGA  220 (287)
Q Consensus       202 ~G~~~~~~a~~~Gvk~~G~  220 (287)
                      +|.+....++..|+....+
T Consensus       256 ~G~~T~~Eal~~g~P~I~i  274 (351)
T d1f0ka_         256 SGALTVSEIAAAGLPALFV  274 (351)
T ss_dssp             CCHHHHHHHHHHTCCEEEC
T ss_pred             CCCHHHHHHHHHCCCEEEE
T ss_conf             5423778888717854654


No 27 
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=88.27  E-value=0.95  Score=23.22  Aligned_cols=133  Identities=15%  Similarity=0.164  Sum_probs=77.2

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEE----CCHH---------HHHHHHHHCCCCEEECCCCCCCHHHHH
Q ss_conf             342799980678777999999966899943899972----8867---------899999956995998288888878999
Q T0613            88 RRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS----NHPR---------ETFSGFDFGDIPFYHFPVNKDTRRQQE  154 (287)
Q Consensus        88 ~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Vis----n~~~---------~~~~~a~~~~Ip~~~~~~~~~~r~~~e  154 (287)
                      -+|++|+-||.=-+..|+..+.+.|-   +|+++++    +.+.         .....|+..|||.+..+... +.+..-
T Consensus         3 ~~~V~vl~SGGKDS~lAl~~a~~~G~---eV~~L~t~~~~~~~s~~~h~~~~~ll~~qAealgiPl~~~~~~~-~~e~~~   78 (226)
T d2d13a1           3 LADVAVLYSGGKDSNYALYWALKSGL---RVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKG-EKEKEV   78 (226)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTC---EEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC---CTTSHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHCCC---EEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCC-CCHHHH
T ss_conf             22199992686999999999998599---05999998437899671657889999999986389826873478-612999


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCC--EEEECCCCCCCCCCCCH---HHHHHHCCCEEEEEEEEEEECCC
Q ss_conf             99999998448999998122101797899841799--89833042787666316---99999817908556899870788
Q T0613           155 AAITALIAQTHTDLVVLARYMQILSDEMSARLAGR--CINIHHSFLPGFKGAKP---YHQAFDRGVKLIGATAHYVTSAL  229 (287)
Q Consensus       155 ~~l~~~l~~~~~DlivLAgym~iL~~~~~~~~~~r--iiNiHpSlLP~f~G~~~---~~~a~~~Gvk~~G~TvH~V~~~l  229 (287)
                      ..+.+.+++.++|-+|   |.-|.+..--.+.++.  -.++.+ +.|-.. .++   .++-++.|.+..=++|-  ..++
T Consensus        79 ~~l~~~l~~~~v~~vv---~Gdi~~~~~r~r~e~~c~~~gl~~-~~PLW~-~d~~~ll~e~i~~G~~aii~~v~--~~gL  151 (226)
T d2d13a1          79 EDLKNVLEGLKVDGIV---AGALASRYQKERIENVARELGLKV-YTPAWE-KDPYQYMLEIIKLGFKVVFVAVS--AYGL  151 (226)
T ss_dssp             HHHHHHHHTBCCSEEE---CCCSSCHHHHHHHHHHHHHHTCEE-ECTTTT-CCHHHHHHHHHHTTCEEEEEEEC--STTC
T ss_pred             HHHHHHHHHCCCCCEE---ECCEECHHHHHHHHHHHHHCCCEE-EECCCC-CCHHHHHHHHHHCCCCEEEEEEC--CCCC
T ss_conf             9999999860725367---610003888999986687659489-823568-89899999999879959999972--4789


Q ss_pred             CC
Q ss_conf             87
Q T0613           230 DE  231 (287)
Q Consensus       230 D~  231 (287)
                      |.
T Consensus       152 ~~  153 (226)
T d2d13a1         152 NE  153 (226)
T ss_dssp             CG
T ss_pred             CH
T ss_conf             97


No 28 
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}
Probab=84.83  E-value=1  Score=22.97  Aligned_cols=75  Identities=15%  Similarity=0.061  Sum_probs=44.7

Q ss_pred             CCCCCEEEEEECC-CCCHHHHHHHHHCCCCCCEEEEEEECCHH-HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             5634279998067-87779999999668999438999728867-899999956995998288888878999999999984
Q T0613            86 ETRRKVMLLVSQS-DHCLADILYRWRVGDLHMIPTAIVSNHPR-ETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQ  163 (287)
Q Consensus        86 ~~~~riavlvSg~-g~~l~all~~~~~g~L~~ei~~Visn~~~-~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~  163 (287)
                      .+|.|++|+.+|. |..+  ++...+ ..=..|+.+|.|-++. .+..+|+++++|+.+-     +    -..+++..+.
T Consensus         2 ~kkirvaIIGaG~ig~~~--~~~~l~-~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~-----~----~d~l~~~~~~   69 (157)
T d1nvmb1           2 NQKLKVAIIGSGNIGTDL--MIKVLR-NAKYLEMGAMVGIDAASDGLARAQRMGVTTTYA-----G----VEGLIKLPEF   69 (157)
T ss_dssp             CSCEEEEEECCSHHHHHH--HHHHHH-HCSSEEEEEEECSCTTCHHHHHHHHTTCCEESS-----H----HHHHHHSGGG
T ss_pred             CCCCEEEEECCCHHHHHH--HHHHHH-HCCCCEEEEEEECCHHCCCHHHHHHCCCCCCCC-----C----EEEEEECCCC
T ss_conf             987679998685999999--999996-198655999985533203103566539740005-----6----1566502455


Q ss_pred             CCCCEEEEE
Q ss_conf             489999981
Q T0613           164 THTDLVVLA  172 (287)
Q Consensus       164 ~~~DlivLA  172 (287)
                      -++|++..|
T Consensus        70 ~~iDiVf~A   78 (157)
T d1nvmb1          70 ADIDFVFDA   78 (157)
T ss_dssp             GGEEEEEEC
T ss_pred             CCCCEEEEC
T ss_conf             546889982


No 29 
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=84.45  E-value=0.54  Score=24.88  Aligned_cols=34  Identities=29%  Similarity=0.477  Sum_probs=29.6

Q ss_pred             EEEEECC---CCCCHHHHHHHHHHHCCCCEEECCCEE
Q ss_conf             9999849---997469999999997598487711102
Q T0613             7 VLTLSCP---DRAGIVSAVSTFLFENGQNILDAQQYN   40 (287)
Q Consensus         7 VLTv~gp---Dr~GIVA~Vt~~Lae~g~NI~disQf~   40 (287)
                      .|++.||   |.+||+++|++.|++.|+.|--+|.|.
T Consensus         4 ~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vSty~   40 (66)
T d1zhva2           4 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFD   40 (66)
T ss_dssp             EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             9998067881467289999999987799869987441


No 30 
>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus horikoshii, PH1647 [TaxId: 53953]}
Probab=72.84  E-value=2.5  Score=20.38  Aligned_cols=82  Identities=11%  Similarity=0.058  Sum_probs=49.5

Q ss_pred             CCCEEEEEECCCCC---HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             34279998067877---799999996689994389997288678999999569959982888888789999999999844
Q T0613            88 RRKVMLLVSQSDHC---LADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQT  164 (287)
Q Consensus        88 ~~riavlvSg~g~~---l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~  164 (287)
                      |+|++|+.+|.-=.   .+.   ..+.|++      .=||..-+.. ..+++|+.......-.++.+...+++.+.+++ 
T Consensus         2 kPrV~iistG~Elv~~~~~~---~~~~g~i------~dsN~~~L~~-~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~-   70 (144)
T d1wu2a3           2 KPKVGIIITGSELIEEPSEE---GFKEGKI------VETNSIMLQG-LVEKFFGEPILYGVLPDDESIIKETLEKAKNE-   70 (144)
T ss_dssp             CCEEEEEEECTTEESSCCHH---HHHTTCE------ECCHHHHHHH-HHHHTTCEEEEEEEECSCHHHHTTHHHHHHHC-
T ss_pred             CCEEEEECCCHHHCCCCCCC---CCCCCCE------EECCCHHHHH-HHCCCCCCEEEEEEECCHHHHHHHHHHHHHHC-
T ss_conf             89899982883115789867---7899968------6447267766-41135862267777256389999999975500-


Q ss_pred             CCCEEEEECCCCCCCHH
Q ss_conf             89999981221017978
Q T0613           165 HTDLVVLARYMQILSDE  181 (287)
Q Consensus       165 ~~DlivLAgym~iL~~~  181 (287)
                       .|+||..|=...=..+
T Consensus        71 -~DlvIttGG~s~g~~D   86 (144)
T d1wu2a3          71 -CDIVLITGGSAFGDKD   86 (144)
T ss_dssp             -SEEEECC--------C
T ss_pred             -CCEEEECCCCCCCCCH
T ss_conf             -5689871664457401


No 31 
>d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=71.16  E-value=1.8  Score=21.41  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=26.2

Q ss_pred             EEEE-CCCCCCHHHHHHHHHHHCCCCEEECCCE
Q ss_conf             9998-4999746999999999759848771110
Q T0613             8 LTLS-CPDRAGIVSAVSTFLFENGQNILDAQQY   39 (287)
Q Consensus         8 LTv~-gpDr~GIVA~Vt~~Lae~g~NI~disQf   39 (287)
                      |.+. .-|.+||.|+||+.|++.|+.+-=++-|
T Consensus         8 L~vhssLe~VGl~A~is~~La~~~Is~nvis~~   40 (64)
T d1zvpa2           8 LTVHSSLEAVGLTAAFATKLAEHGISANVIAGY   40 (64)
T ss_dssp             EECCC--CCSCHHHHHHHHHHHTTCCCEEEECS
T ss_pred             EECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             944786688768999999999779973787721


No 32 
>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=66.99  E-value=2.5  Score=20.38  Aligned_cols=58  Identities=7%  Similarity=-0.000  Sum_probs=35.4

Q ss_pred             EEEEEECC---CCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89999849---997469999999997598487711102456576899999962877789899999999999872
Q T0613             6 YVLTLSCP---DRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKF   76 (287)
Q Consensus         6 ~VLTv~gp---Dr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfMri~~~~~~~~~~~~~L~~al~~la~~~   76 (287)
                      .+++++|.   .++|+.+++.+.|++.|+++.-  |-. .+.   .+-..++-       +...++...+-++|
T Consensus         2 a~IsvvG~gm~~~~gi~arif~~L~~~nI~~i~--~~~-Se~---~is~vV~~-------~d~~~Av~aLh~~F   62 (64)
T d2j0wa3           2 ALVALIGNDLSKACGVGKEVFGVLEPFNIRMIC--YGA-SSH---NLCFLVPG-------EDAEQVVQKLHSNL   62 (64)
T ss_dssp             EEEEEEESSCTTSSSHHHHHHSSCTTSCCCEEE--ESS-CTT---EEEEEEEG-------GGHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE--EEC-CCC---EEEEEECH-------HHHHHHHHHHHHHH
T ss_conf             099997788354834999999998657976999--975-702---79999838-------99999999999986


No 33 
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=64.20  E-value=5  Score=18.40  Aligned_cols=91  Identities=16%  Similarity=0.147  Sum_probs=56.9

Q ss_pred             CCCCCEEEEEECCC--CCHHHHHHHHHCCCCCCEEEEEEECCH---H----H--HHHHHHHCCCCEEECCCCC-------
Q ss_conf             56342799980678--777999999966899943899972886---7----8--9999995699599828888-------
Q T0613            86 ETRRKVMLLVSQSD--HCLADILYRWRVGDLHMIPTAIVSNHP---R----E--TFSGFDFGDIPFYHFPVNK-------  147 (287)
Q Consensus        86 ~~~~riavlvSg~g--~~l~all~~~~~g~L~~ei~~Visn~~---~----~--~~~~a~~~~Ip~~~~~~~~-------  147 (287)
                      .+.+|++|-+||.-  +.|-.++..+.....+.++.++.-||.   +    +  ....++..++|++......       
T Consensus        11 ~~~kkvlva~SGG~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r~~s~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~   90 (227)
T d1ni5a1          11 LTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLGI   90 (227)
T ss_dssp             TTCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCCCCSSSTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCH
T ss_conf             88996899963849999999999999875889569999867898752144589999997541576326631333344303


Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             88789999999999844899999812210
Q T0613           148 DTRRQQEAAITALIAQTHTDLVVLARYMQ  176 (287)
Q Consensus       148 ~~r~~~e~~l~~~l~~~~~DlivLAgym~  176 (287)
                      ..+..............+.+.++++-..-
T Consensus        91 e~~~~~~~~~~~~~~~~~~~~i~~gH~~d  119 (227)
T d1ni5a1          91 EAQARQARYQAFARTLLPGEVLVTAQHLD  119 (227)
T ss_dssp             TTHHHHHHHHHHHHTCCTTEEEECCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             66899999998887752038999998888


No 34 
>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=61.51  E-value=1.1  Score=22.77  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=30.8

Q ss_pred             CEEEEEEECCC---CCCHHHHHHHHHHHCCCCEEECCC
Q ss_conf             70899998499---974699999999975984877111
Q T0613             4 HQYVLTLSCPD---RAGIVSAVSTFLFENGQNILDAQQ   38 (287)
Q Consensus         4 ~~~VLTv~gpD---r~GIVA~Vt~~Lae~g~NI~disQ   38 (287)
                      +..++|+.|.+   ++|+.+++.+.|+++|+||.=++|
T Consensus        13 ~~~~i~v~g~~m~~~~G~~~~if~~L~~~~Inv~mis~   50 (91)
T d2j0wa2          13 NQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT   50 (91)
T ss_dssp             EEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEE
T ss_pred             CEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf             98999998088777767999999999985992899971


No 35 
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=60.53  E-value=5.7  Score=17.96  Aligned_cols=76  Identities=8%  Similarity=-0.070  Sum_probs=44.8

Q ss_pred             CCHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             7779999999668999438999728867-89-99999569959982-888888789999999999844899999812210
Q T0613           100 HCLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ  176 (287)
Q Consensus       100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~  176 (287)
                      +++++++.   +.  ..+++.+.+.... +. ...+-++|++.++- |..  ...+.-.++.++.++.+  ..++.||++
T Consensus        56 ~~~~~ll~---~~--~iD~v~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~--~~~~e~~~l~~~~~~~~--~~~~v~~~~  126 (184)
T d1ydwa1          56 GSYESLLE---DP--EIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVA--MNVTEFDKIVDACEANG--VQIMDGTMW  126 (184)
T ss_dssp             SSHHHHHH---CT--TCCEEEECCCGGGHHHHHHHHHTTTCEEEECSSCS--SSHHHHHHHHHHHHTTT--CCEEECCCG
T ss_pred             CCHHHHHH---CC--CCCEEEECCCCHHHCCHHHHHHHCCCEEECCCCCC--CCHHHHHHHHHHHHHHC--CEEEEEEEE
T ss_conf             76787521---13--21024202320100221455530240022053333--67999999999999639--989999756


Q ss_pred             CCCHHHHH
Q ss_conf             17978998
Q T0613           177 ILSDEMSA  184 (287)
Q Consensus       177 iL~~~~~~  184 (287)
                      ...|.+..
T Consensus       127 r~~~~~~~  134 (184)
T d1ydwa1         127 VHPQEACM  134 (184)
T ss_dssp             GGCHHHHH
T ss_pred             ECCHHHHH
T ss_conf             60857899


No 36 
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}
Probab=57.42  E-value=6.5  Score=17.62  Aligned_cols=64  Identities=5%  Similarity=-0.091  Sum_probs=31.4

Q ss_pred             CEEEEEEECCHH-HH-HHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
Q ss_conf             438999728867-89-99999569959982-8888887899999999998448999998122101797899
Q T0613           116 MIPTAIVSNHPR-ET-FSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQILSDEMS  183 (287)
Q Consensus       116 ~ei~~Visn~~~-~~-~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~iL~~~~~  183 (287)
                      ++.+.+.+.+.. +. ...|-++|++.++- |.. .+-+ .-.++.++.++.  +.+++.||++..++.+.
T Consensus       101 iD~V~I~tp~~~H~~~~~~al~~gk~v~~EKPla-~~~~-e~~~l~~~a~~~--~~~~~v~~~~r~~p~~~  167 (221)
T d1h6da1         101 IDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMA-TSVA-DCQRMIDAAKAA--NKKLMIGYRCHYNQFSA  167 (221)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCC-SSHH-HHHHHHHHHHHH--TCCEEECCGGGGCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCHHHHCCCCCC-CCHH-HHHHHHHHHHHC--CCCEEEEECCCCCHHHH
T ss_conf             2013312302445668888650111110278753-8899-999999999850--99479754113588999


No 37 
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}
Probab=57.00  E-value=3.6  Score=19.31  Aligned_cols=76  Identities=13%  Similarity=0.067  Sum_probs=40.3

Q ss_pred             CCCEEEEEECCCC---CHHHHHHHHHCCCCCCEEEEEEECCHHHHH-------------------------HHHHHCCCC
Q ss_conf             3427999806787---779999999668999438999728867899-------------------------999956995
Q T0613            88 RRKVMLLVSQSDH---CLADILYRWRVGDLHMIPTAIVSNHPRETF-------------------------SGFDFGDIP  139 (287)
Q Consensus        88 ~~riavlvSg~g~---~l~all~~~~~g~L~~ei~~Visn~~~~~~-------------------------~~a~~~~Ip  139 (287)
                      +.|-+|.++|-|+   ++++|..+.+.+ ||  +..||-|+..++.                         ..|+.+|++
T Consensus        79 p~~~Vv~i~GDGsf~~~~~el~t~~~~~-lp--i~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~  155 (198)
T d2ihta3          79 PDQPTFLIAGDGGFHSNSSDLETIARLN-LP--IVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGVD  155 (198)
T ss_dssp             TTSCEEEEEEHHHHHHTGGGHHHHHHHT-CC--CEEEEEECSBCHHHHHHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCE
T ss_pred             CCCCEEEECCCCCCCCCCHHHHHHHHHH-HH--HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCE
T ss_conf             3421575035631000010244455443-45--56778634546537652101243233433356774354412346840


Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             9982888888789999999999844899999
Q T0613           140 FYHFPVNKDTRRQQEAAITALIAQTHTDLVV  170 (287)
Q Consensus       140 ~~~~~~~~~~r~~~e~~l~~~l~~~~~Dliv  170 (287)
                      ++.+    .+.++.+.++.+.++.-+|-+|-
T Consensus       156 ~~~v----~~~~el~~al~~a~~~~~p~lIe  182 (198)
T d2ihta3         156 ATRA----TNREELLAALRKGAELGRPFLIE  182 (198)
T ss_dssp             EEEC----CSHHHHHHHHHHHHTSSSCEEEE
T ss_pred             EEEE----CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             8995----89999999999999689988999


No 38 
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=56.46  E-value=6.5  Score=17.61  Aligned_cols=78  Identities=9%  Similarity=0.071  Sum_probs=47.7

Q ss_pred             CCCCEEEEEECCCC---CHHHHHHHHHCCCCCCEEEEEEECCHHHHHH--------------------------------
Q ss_conf             63427999806787---7799999996689994389997288678999--------------------------------
Q T0613            87 TRRKVMLLVSQSDH---CLADILYRWRVGDLHMIPTAIVSNHPRETFS--------------------------------  131 (287)
Q Consensus        87 ~~~riavlvSg~g~---~l~all~~~~~g~L~~ei~~Visn~~~~~~~--------------------------------  131 (287)
                      .+.|-+|.++|-|+   ++|+|.-+.+. .|  .+..||-|+..++..                                
T Consensus        68 ~p~~~Vi~i~GDGsf~m~~~El~Ta~r~-~l--pi~iiV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~~~pd~~~  144 (208)
T d1ybha3          68 NPDAIVVDIDGDGSFIMNVQELATIRVE-NL--PVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLL  144 (208)
T ss_dssp             CTTSCEEEEEEHHHHHHTTTHHHHHHHT-TC--CEEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHH
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHHH-CC--CEEEEEEECCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             7887289981687311001167899995-98--97999994653653120001013665454202566545777888999


Q ss_pred             HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9995699599828888887899999999998448999998
Q T0613           132 GFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVL  171 (287)
Q Consensus       132 ~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~DlivL  171 (287)
                      .|+.+|+..+.+    .+.++.+.++.+.++.-+|-+|-.
T Consensus       145 iA~a~G~~~~~v----~~~~el~~al~~a~~~~~p~lIeV  180 (208)
T d1ybha3         145 FAAACGIPAARV----TKKADLREAIQTMLDTPGPYLLDV  180 (208)
T ss_dssp             HHHHTTCCEEEE----CBHHHHHHHHHHHHHSSSCEEEEE
T ss_pred             HHCCCCCEEEEC----CCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             612389308972----899999999999986899899999


No 39 
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}
Probab=55.47  E-value=5.8  Score=17.94  Aligned_cols=73  Identities=19%  Similarity=0.109  Sum_probs=43.1

Q ss_pred             CCEEEEEECCC---CCHHHHHHHHHCCCCCCEEEEEEECCH-----------------------HHHHHHHHHCCCCEEE
Q ss_conf             42799980678---777999999966899943899972886-----------------------7899999956995998
Q T0613            89 RKVMLLVSQSD---HCLADILYRWRVGDLHMIPTAIVSNHP-----------------------RETFSGFDFGDIPFYH  142 (287)
Q Consensus        89 ~riavlvSg~g---~~l~all~~~~~g~L~~ei~~Visn~~-----------------------~~~~~~a~~~~Ip~~~  142 (287)
                      .|-.+.+.|-|   +++++|..+.+.+ +|  +..||-|+.                       +.. ..|+.+|++++.
T Consensus        74 ~~~vv~i~GDGsf~~~~~el~ta~~~~-l~--i~iiV~NN~g~~~~~q~~~~~~~~~~~~~~~~d~~-~~A~a~G~~~~~  149 (183)
T d2ji7a3          74 GKPVIAVEGDSAFGFSGMELETICRYN-LP--VTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYD-MMMEAFGGKGYV  149 (183)
T ss_dssp             CSCEEEEEEHHHHHTTGGGHHHHHHTT-CC--EEEEEEECSBSSCSCCCCSBTTBCCTTBCCCCCHH-HHHHHTTCEEEE
T ss_pred             CCEEEEEECCCCHHHCHHHHHHHHHCC-CC--CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH-HHHHHCCCCEEE
T ss_conf             623999975840431103666664204-32--11024454413324310044554332233200066-655314974799


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf             288888878999999999984489999
Q T0613           143 FPVNKDTRRQQEAAITALIAQTHTDLV  169 (287)
Q Consensus       143 ~~~~~~~r~~~e~~l~~~l~~~~~Dli  169 (287)
                      +    .+.++.+.++.+.++.-+|-+|
T Consensus       150 v----~~~~el~~al~~a~~~~~p~lI  172 (183)
T d2ji7a3         150 A----NTPAELKAALEEAVASGKPCLI  172 (183)
T ss_dssp             E----CSHHHHHHHHHHHHHHTSCEEE
T ss_pred             E----CCHHHHHHHHHHHHHCCCCEEE
T ss_conf             6----8999999999999958995999


No 40 
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=55.35  E-value=7  Score=17.40  Aligned_cols=91  Identities=11%  Similarity=0.169  Sum_probs=48.6

Q ss_pred             CCEEEEEECCC--CCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHH---HHHHHHHHHHH
Q ss_conf             42799980678--77799999996689994389997288678999999569959982888888789---99999999984
Q T0613            89 RKVMLLVSQSD--HCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQ---QEAAITALIAQ  163 (287)
Q Consensus        89 ~riavlvSg~g--~~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~---~e~~l~~~l~~  163 (287)
                      +||+||=||-|  |-|.+|...     ||.+=-.-+.|..          ..     |....++++   +-.++.+.+.+
T Consensus         1 mkIgifDSGiGGLtVl~~l~~~-----lP~~~~iY~~D~a----------~~-----PYG~ks~~~I~~~~~~~~~~l~~   60 (105)
T d1b74a1           1 MKIGIFDSGVGGLTVLKAIRNR-----YRKVDIVYLGDTA----------RV-----PYGIRSKDTIIRYSLECAGFLKD   60 (105)
T ss_dssp             CEEEEEESSSTHHHHHHHHHHH-----SSSCEEEEEECGG----------GC-----CGGGSCHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCHHHHHHHHHHH-----CCCCCEEEEECCC----------CC-----CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9799983897879999999997-----8999879985688----------79-----88989999999999999999997


Q ss_pred             CCCCEEEEECCCCC-C-CHHHHHHCCCCEEE-ECCCCCC
Q ss_conf             48999998122101-7-97899841799898-3304278
Q T0613           164 THTDLVVLARYMQI-L-SDEMSARLAGRCIN-IHHSFLP  199 (287)
Q Consensus       164 ~~~DlivLAgym~i-L-~~~~~~~~~~riiN-iHpSlLP  199 (287)
                      +++|+||+|-=--= . -+.+-++|+-.++. +.|+.-|
T Consensus        61 ~~~~~iViACNTaS~~al~~lr~~~~~PiiGvi~P~ik~   99 (105)
T d1b74a1          61 KGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKE   99 (105)
T ss_dssp             TTCSEEEECCHHHHHHHHHHHHHHSSSCEEESHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEHHHHHH
T ss_conf             499989980571789999999987899999932289999


No 41 
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}
Probab=53.90  E-value=7.4  Score=17.24  Aligned_cols=98  Identities=12%  Similarity=0.026  Sum_probs=56.7

Q ss_pred             CCCCEEEEEECCC--CCHHHHHHHHHCCCCCCEEEEEEECC---HH----H--HHHHHHHCCCCEEECCCCC--------
Q ss_conf             6342799980678--77799999996689994389997288---67----8--9999995699599828888--------
Q T0613            87 TRRKVMLLVSQSD--HCLADILYRWRVGDLHMIPTAIVSNH---PR----E--TFSGFDFGDIPFYHFPVNK--------  147 (287)
Q Consensus        87 ~~~riavlvSg~g--~~l~all~~~~~g~L~~ei~~Visn~---~~----~--~~~~a~~~~Ip~~~~~~~~--------  147 (287)
                      ..+|++|-+||.-  +.|-.++..++...-.-++.++.-||   +.    .  ....++..|||+++.....        
T Consensus        23 ~~~kv~Va~SGG~DS~~Ll~lL~~~~~~~~~~~i~~~~vdh~~r~~s~~~~~~~~~~~~~l~i~~~i~~~~~~~~~~~~~  102 (216)
T d1wy5a1          23 GERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKEDVRAFAKENR  102 (216)
T ss_dssp             SCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHTT
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf             99869999678599999999999998766877088887511234103321347899998620001021021011113776


Q ss_pred             CCHHHH-----HHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
Q ss_conf             887899-----9999999984489999981221017978998
Q T0613           148 DTRRQQ-----EAAITALIAQTHTDLVVLARYMQILSDEMSA  184 (287)
Q Consensus       148 ~~r~~~-----e~~l~~~l~~~~~DlivLAgym~iL~~~~~~  184 (287)
                      .+-+..     -..+.+..++.+.|.|+++=.+-=.-+.|+-
T Consensus       103 ~~~~~~~R~~Ry~~l~~~a~~~~~~~ia~GH~~dD~~Et~l~  144 (216)
T d1wy5a1         103 MSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSLL  144 (216)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHH
T ss_conf             445787999998876411112231215765202415889999


No 42 
>d1qv9a_ c.127.1.1 (A:) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=53.72  E-value=7.4  Score=17.23  Aligned_cols=88  Identities=10%  Similarity=0.017  Sum_probs=47.9

Q ss_pred             CCHHHCCCCCCCCEEEEEECCCCCHHHH-HHHHH------CCCCCCEEEEEEECCHHH-HHHHH----HHCCCCEEECCC
Q ss_conf             2010001356342799980678777999-99996------689994389997288678-99999----956995998288
Q T0613            78 MGWHMRDRETRRKVMLLVSQSDHCLADI-LYRWR------VGDLHMIPTAIVSNHPRE-TFSGF----DFGDIPFYHFPV  145 (287)
Q Consensus        78 ~~i~i~~~~~~~riavlvSg~g~~l~al-l~~~~------~g~L~~ei~~Visn~~~~-~~~~a----~~~~Ip~~~~~~  145 (287)
                      ++.-++....+..|-+.+-|+|..++-= .++..      -.+.+.+.+++||-++.+ ++..|    ...|||..++.-
T Consensus        19 ~dLlLDErAdRedi~vrv~gsGaKM~pe~~e~~~~~~~~~~~~~~pDf~i~isPN~aaPGP~~ARE~l~~~giP~IvI~D   98 (282)
T d1qv9a_          19 MDMLLDERADREDVEFRVVGTSVKMDPECVEAAVEMALDIAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGD   98 (282)
T ss_dssp             TTGGGSTTSCCSSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEE
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf             99986542046885389841477678877999999888888873897899974788888746789998727997899728


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             88887899999999998448999998
Q T0613           146 NKDTRRQQEAAITALIAQTHTDLVVL  171 (287)
Q Consensus       146 ~~~~r~~~e~~l~~~l~~~~~DlivL  171 (287)
                      ....|..      +.+++.+--||++
T Consensus        99 ~p~~k~~------d~l~e~GfGYIii  118 (282)
T d1qv9a_          99 APGLKVK------DEMEEQGLGYILV  118 (282)
T ss_dssp             GGGGGGH------HHHHHTTCEEEEE
T ss_pred             CCCHHHH------HHHHHCCCCEEEE
T ss_conf             7430148------9998458948997


No 43 
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=52.78  E-value=1.9  Score=21.15  Aligned_cols=14  Identities=36%  Similarity=0.494  Sum_probs=11.4

Q ss_pred             CCCEEEECCCCCCC
Q ss_conf             79989833042787
Q T0613           187 AGRCINIHHSFLPG  200 (287)
Q Consensus       187 ~~riiNiHpSlLP~  200 (287)
                      .|-+=||||+|||+
T Consensus        93 GGv~P~Ih~~Llpk  106 (106)
T d1tzya_          93 GGVLPNIQAVLLPK  106 (106)
T ss_dssp             CCCCCCCCGGGSCC
T ss_pred             CCCCCCCCHHHCCC
T ss_conf             87267517865698


No 44 
>d1u6ka1 c.127.1.1 (A:2-283) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=51.83  E-value=7.9  Score=17.03  Aligned_cols=88  Identities=10%  Similarity=0.032  Sum_probs=49.9

Q ss_pred             CCHHHCCCCCCCCEEEEEECCCCCHHH--HHHHHH-----CCCCCCEEEEEEECCHHH-HHHHH----HHCCCCEEECCC
Q ss_conf             201000135634279998067877799--999996-----689994389997288678-99999----956995998288
Q T0613            78 MGWHMRDRETRRKVMLLVSQSDHCLAD--ILYRWR-----VGDLHMIPTAIVSNHPRE-TFSGF----DFGDIPFYHFPV  145 (287)
Q Consensus        78 ~~i~i~~~~~~~riavlvSg~g~~l~a--ll~~~~-----~g~L~~ei~~Visn~~~~-~~~~a----~~~~Ip~~~~~~  145 (287)
                      ++.-++....+..|-+.+-|+|..++-  .=+...     -.+.+.+.+++||-++.+ ++..|    ...|||+.++.-
T Consensus        19 ~dLlLDErAdRedi~vrv~gsGaKM~pe~~e~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~giP~ivI~D   98 (282)
T d1u6ka1          19 MDMLLDERADREDVEFRVVGTSVKMDPECVEAAVEMALDIAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGD   98 (282)
T ss_dssp             TTGGGSTTSCCSSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEE
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf             99987654044686389842666769788888998888788851999899978988899957799999756998799758


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             88887899999999998448999998
Q T0613           146 NKDTRRQQEAAITALIAQTHTDLVVL  171 (287)
Q Consensus       146 ~~~~r~~~e~~l~~~l~~~~~DlivL  171 (287)
                      ....| .     .+.+++.+--||++
T Consensus        99 ~p~~k-~-----~d~~~~~gfGYIi~  118 (282)
T d1u6ka1          99 APGLK-V-----KDEMEEQGLGYILV  118 (282)
T ss_dssp             GGGGG-G-----HHHHHHTTCEEEEE
T ss_pred             CCCHH-H-----HHHHHHCCCCEEEE
T ss_conf             85254-6-----89998658857997


No 45 
>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}
Probab=50.90  E-value=8.2  Score=16.93  Aligned_cols=115  Identities=15%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             CCCCEEEEEECC--CCCHHHHHHHHHCCCCCCEEEEEEECCHH-HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             634279998067--87779999999668999438999728867-899999956995998288888878999999999984
Q T0613            87 TRRKVMLLVSQS--DHCLADILYRWRVGDLHMIPTAIVSNHPR-ETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQ  163 (287)
Q Consensus        87 ~~~riavlvSg~--g~~l~all~~~~~g~L~~ei~~Visn~~~-~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~  163 (287)
                      +++||+||.|-.  |.+.-+++.+..+   ..++.++.+|+.- .-.+.+..+.-.+.++.-.    ..+ ..+...+..
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d---~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~----~~~-~~l~~~~~~   72 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLDLIERNLD---RYQVIALTANRNVKDLADAAKRTNAKRAVIADP----SLY-NDLKEALAG   72 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGG---GEEEEEEEESSCHHHHHHHHHHTTCSEEEESCG----GGH-HHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCC---CCEEEEEEECCCHHHHHHHHHHHCCCCCEECCH----HHH-HHHHHHHHH
T ss_conf             995899988796999999999981977---718999995797899888887534443032118----789-999998513


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHCC-CCEEEECCCCCCCCCCCCHHHHHHHCCCEEE
Q ss_conf             489999981221017978998417-9989833042787666316999998179085
Q T0613           164 THTDLVVLARYMQILSDEMSARLA-GRCINIHHSFLPGFKGAKPYHQAFDRGVKLI  218 (287)
Q Consensus       164 ~~~DlivLAgym~iL~~~~~~~~~-~riiNiHpSlLP~f~G~~~~~~a~~~Gvk~~  218 (287)
                      +++.  ++.|.--+.  .+ ...+ .-++|-    ...|.|..|--.|+.+|-++.
T Consensus        73 ~~~~--v~~g~~~l~--~~-~~~~~D~vv~A----i~G~~GL~~tl~ai~~gk~ia  119 (150)
T d1r0ka2          73 SSVE--AAAGADALV--EA-AMMGADWTMAA----IIGCAGLKATLAAIRKGKTVA  119 (150)
T ss_dssp             CSSE--EEESHHHHH--HH-HTSCCSEEEEC----CCSGGGHHHHHHHHHTTSEEE
T ss_pred             CCCC--CCCCCCCHH--EE-CCCCCCEEEEE----CCCHHHHHHHHHHHHCCCEEE
T ss_conf             2311--125852011--00-02444323430----475047889999974698899


No 46 
>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Probab=47.83  E-value=9.1  Score=16.62  Aligned_cols=60  Identities=8%  Similarity=0.018  Sum_probs=43.9

Q ss_pred             CCCCEEEEEEECC----HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH-----HCCCCEEEEECC
Q ss_conf             9994389997288----6789999995699599828888887899999999998-----448999998122
Q T0613           113 DLHMIPTAIVSNH----PRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIA-----QTHTDLVVLARY  174 (287)
Q Consensus       113 ~L~~ei~~Visn~----~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~-----~~~~DlivLAgy  174 (287)
                      ++.|+|...-||-    +++++.-++..|||.+  .++..+.++|..-+.+.|.     ..+||+|+=-|=
T Consensus        65 ~~GAeV~~~scNp~STQD~vAAAl~~~~gi~Vf--AwkGet~eey~~~i~~~L~~~dg~~~~P~~IlDDGg  133 (313)
T d1v8ba2          65 KLGAQIRWCSCNIYSTADYAAAAVSTLENVTVF--AWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGG  133 (313)
T ss_dssp             HTTCEEEEECSSSSCCCHHHHHHHTTSTTEEEE--CCTTCCHHHHHHHHHHHHCCSSSSSCSCSEEEESSS
T ss_pred             HHCCEEEEECCCCCCCCHHHHHHHHCCCCCEEE--EECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEHHH
T ss_conf             838836774268765654888976404883289--856999899999999887267787889867860067


No 47 
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.80  E-value=2.7  Score=20.14  Aligned_cols=14  Identities=36%  Similarity=0.456  Sum_probs=11.5

Q ss_pred             CCCEEEECCCCCCC
Q ss_conf             79989833042787
Q T0613           187 AGRCINIHHSFLPG  200 (287)
Q Consensus       187 ~~riiNiHpSlLP~  200 (287)
                      .|-+=||||+|||+
T Consensus        92 GGv~p~Ih~~Ll~k  105 (106)
T d1u35c1          92 GGVLPNIHPELLAK  105 (106)
T ss_dssp             CCCCCCCCGGGSCC
T ss_pred             CCCCCCCCHHHCCC
T ss_conf             96257738876389


No 48 
>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]}
Probab=44.88  E-value=10  Score=16.32  Aligned_cols=69  Identities=7%  Similarity=0.123  Sum_probs=48.3

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEEE-EEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             089999849997469999999997598487711102456576899-99996287778989999999999987252
Q T0613             5 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFM-RVVFNAAAKVIPLASLRTGFGVIAAKFTM   78 (287)
Q Consensus         5 ~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~FfM-ri~~~~~~~~~~~~~L~~al~~la~~~~~   78 (287)
                      .|-+.++|++..+..+.|...+.++..+-..++.. .--+|.|.. ++.+.    .-+.+++.+-++++.+.=++
T Consensus        14 ~y~~KvIg~~~~~~~~~v~~i~~~~~~~~~~~~~k-~Ss~GkY~Svtv~i~----~~s~eqv~~iY~~l~~~~~V   83 (87)
T d1rwua_          14 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVK-PSSKGNYHSVSITIN----ATHIEQVETLYEELGKIDIV   83 (87)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCEEEE-ESSCSSEEEEEEEEC----CSSHHHHHHHHHHHSCSSSC
T ss_pred             CCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEE-CCCCCCEEEEEEEEE----ECCHHHHHHHHHHHHCCCCE
T ss_conf             76799999777548999999999867887762231-389984899999999----88999999999998349998


No 49 
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.93  E-value=8  Score=17.02  Aligned_cols=54  Identities=11%  Similarity=-0.063  Sum_probs=31.3

Q ss_pred             EEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf             55689987078887976400157538898989999999998899999999988598389
Q T0613           218 IGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI  276 (287)
Q Consensus       218 ~G~TvH~V~~~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~  276 (287)
                      ++.++....... .|.-   -.++|.++||+.+|++++.+.+.. -+.-.+|+..||++
T Consensus        25 ~~~~i~V~V~~~-~Gk~---~~v~V~p~~TV~~LK~~I~~~~gi-p~~~qrLi~~Gk~L   78 (100)
T d1uh6a_          25 AATMIEVVCNDR-LGKK---VRVKCNTDDTIGDLKKLIAAQTGT-RWNKIVLKKWYTIF   78 (100)
T ss_dssp             CCCEEEEEEECS-SSSC---EEEEEETTSBHHHHHHHHHHHHCC-CGGGCEEEETTEEC
T ss_pred             CCCEEEEEEECC-CCCE---EEEEECCCCHHHHHHHHHHHHHCC-CCCEEEEEEEEECC
T ss_conf             874599999889-9999---999988857299999999998798-74249999981003


No 50 
>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}
Probab=42.88  E-value=11  Score=16.12  Aligned_cols=77  Identities=9%  Similarity=0.122  Sum_probs=42.4

Q ss_pred             CCEEEEEECCC-CCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             42799980678-77799999996689994389997288678999999569959982888888789999999999844899
Q T0613            89 RKVMLLVSQSD-HCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTD  167 (287)
Q Consensus        89 ~riavlvSg~g-~~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~D  167 (287)
                      .+++|+  |-| --+.++..+...   .++-+.+++.++ ...+.|++.|-. ++++.+..+..++.+++.+.....++|
T Consensus        30 ~~VlV~--GaG~iG~~~~~~ak~~---Ga~~Vi~~~~~~-~~~~~a~~lGa~-~vi~~~~~~~~~~~~~i~~~~~~~g~D  102 (182)
T d1vj0a2          30 KTVVIQ--GAGPLGLFGVVIARSL---GAENVIVIAGSP-NRLKLAEEIGAD-LTLNRRETSVEERRKAIMDITHGRGAD  102 (182)
T ss_dssp             CEEEEE--CCSHHHHHHHHHHHHT---TBSEEEEEESCH-HHHHHHHHTTCS-EEEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             CEEEEE--CCCCCCHHHEECCCCC---CCCCCCCCCCCC-CCCCCCCCCCCE-EEEECCCCCHHHHHHHHHHHHCCCCCE
T ss_conf             999998--9986522220223333---232212333322-212122344433-787424421477899999861897733


Q ss_pred             EEEEE
Q ss_conf             99981
Q T0613           168 LVVLA  172 (287)
Q Consensus       168 livLA  172 (287)
                      .|+=+
T Consensus       103 vvid~  107 (182)
T d1vj0a2         103 FILEA  107 (182)
T ss_dssp             EEEEC
T ss_pred             EEEEC
T ss_conf             88424


No 51 
>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=41.67  E-value=11  Score=16.00  Aligned_cols=85  Identities=11%  Similarity=0.029  Sum_probs=50.3

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf             42799980678777999999966899943899972886789999995699599828888887899999999998448999
Q T0613            89 RKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDL  168 (287)
Q Consensus        89 ~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~Dl  168 (287)
                      +|++|+.+|.-=.     .. ...-.+.+|  .=||..-.. ...+++|........-.+++++-.+++.+.+++  .|+
T Consensus         1 PrV~iistG~El~-----~~-~~~~~~g~i--~dsN~~~l~-~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~--~Dl   69 (155)
T d2ftsa3           1 PVVAVMSTGNELL-----NP-EDDLLPGKI--RDSNRSTLL-ATIQEHGYPTINLGIVGDNPDDLLNALNEGISR--ADV   69 (155)
T ss_dssp             CCEEEEEECTTEE-----CT-TSCCCTTCE--ECCHHHHHH-HHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHH--CSE
T ss_pred             CEEEEEECCHHCC-----CC-CCCCCCCCE--EECHHHHHH-HHHCCCCCCEEEEEEECCCHHHHHHHHHHHHCC--CCE
T ss_conf             9899996883106-----89-986999958--606199999-973345655178888447614779999986504--677


Q ss_pred             EEEECCCCCCCHHHHH
Q ss_conf             9981221017978998
Q T0613           169 VVLARYMQILSDEMSA  184 (287)
Q Consensus       169 ivLAgym~iL~~~~~~  184 (287)
                      |+.-|=.-.=..+++.
T Consensus        70 iittGG~s~g~~D~~~   85 (155)
T d2ftsa3          70 IITSGGVSMGEKDYLK   85 (155)
T ss_dssp             EEEESCCSSSCCHHHH
T ss_pred             EEEECCCCCCCCHHHH
T ss_conf             9983466677404559


No 52 
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.99  E-value=2.6  Score=20.27  Aligned_cols=19  Identities=0%  Similarity=-0.225  Sum_probs=9.0

Q ss_pred             EEECCCCCCHHHHHHHHHH
Q ss_conf             5753889898999999999
Q T0613           239 VERISHRDTPADLVRKGRD  257 (287)
Q Consensus       239 ~v~V~~~dt~e~L~~r~~~  257 (287)
                      .+.|.+++|+++|+++++.
T Consensus        25 ~l~V~~~~tV~~LK~~Ie~   43 (102)
T d1v5oa_          25 SLQVNPDFELSNFRVLCEL   43 (102)
T ss_dssp             EEEECTTCBHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHH
T ss_conf             9998993639999999999


No 53 
>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=40.06  E-value=12  Score=15.84  Aligned_cols=28  Identities=7%  Similarity=0.101  Sum_probs=17.2

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCHHHH
Q ss_conf             99999998448999998122101797899
Q T0613           155 AAITALIAQTHTDLVVLARYMQILSDEMS  183 (287)
Q Consensus       155 ~~l~~~l~~~~~DlivLAgym~iL~~~~~  183 (287)
                      .++.++.++ ...+.+..||++...|.+.
T Consensus       132 ~~l~~~a~~-~~~~~~~v~~~~R~~p~~~  159 (237)
T d2nvwa1         132 EELYSISQQ-RANLQTIICLQGRYNSVVG  159 (237)
T ss_dssp             HHHHHHHHT-CTTCEEEEECGGGCCHHHH
T ss_pred             HHHHHHHHH-CCCEEEEEEECCCCCHHHH
T ss_conf             999998763-4880699997776888999


No 54 
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.00  E-value=0.93  Score=23.29  Aligned_cols=41  Identities=12%  Similarity=0.127  Sum_probs=23.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCE
Q ss_conf             015753889898999999999889999999998859838982674
Q T0613           237 QDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRK  281 (287)
Q Consensus       237 Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~~k  281 (287)
                      ...+.|.+++|+++|++++++.+    +...||+..||++-+..+
T Consensus        19 ~~~v~v~~~~TV~~lK~~i~~~~----~~~qrLi~~Gk~L~dd~~   59 (95)
T d1wiaa_          19 EELAVARPEDTVGTLKSKYFPGQ----ESQMKLIYQGRLLQDPAR   59 (95)
T ss_dssp             EEEEEECSSSBHHHHHHHHSSST----TTTCEEEETTEECCCSSC
T ss_pred             EEEEEECCCCCHHHHHHHHHCCC----CCEEEEEECCEECCCCCC
T ss_conf             99999899581999999986379----300699999998436788


No 55 
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]}
Probab=38.85  E-value=8.5  Score=16.84  Aligned_cols=94  Identities=14%  Similarity=0.042  Sum_probs=60.3

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHH---HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH-
Q ss_conf             63427999806787779999999668999438999728867---89999995699599828888887899999999998-
Q T0613            87 TRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPR---ETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIA-  162 (287)
Q Consensus        87 ~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~---~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~-  162 (287)
                      -+.+++++.-|++|...+|...++.|...-.|--=-...|.   ..+..|+++++....-.-+ -+..-|=+.-++.++ 
T Consensus        58 ~P~N~g~~gkGn~s~~~~l~eqi~aGa~GlKiHEDwGatp~~Id~~L~vad~~dvqv~iHtDt-lNE~Gfve~T~~a~~g  136 (389)
T d1e9yb2          58 YSMNLGFLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPSAINHALDVADKYDVQVAIHTDT-LNEAGCVEDTMAAIAG  136 (389)
T ss_dssp             SSSEEEEEEECCCSCHHHHHHHHHTTCSEEEECGGGCCCHHHHHHHHHHHHHTTCEEEECCCT-TCSSCCHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCCC-CCCCCCHHHHHHHHCC
T ss_conf             772536621167798378999997230322023102678788889999877509538943897-6654303648998679


Q ss_pred             -------------HCCCCEEEEECCCCCCCHH
Q ss_conf             -------------4489999981221017978
Q T0613           163 -------------QTHTDLVVLARYMQILSDE  181 (287)
Q Consensus       163 -------------~~~~DlivLAgym~iL~~~  181 (287)
                                   -+.||+|.++||-.+||..
T Consensus       137 RtiH~~HtEGaGGGHAPDii~~~~~~nvLpsS  168 (389)
T d1e9yb2         137 RTMHTFHTEGAGGGHAPDIIKVAGEHNILPAS  168 (389)
T ss_dssp             CCEEETTTTSTTSCSTTTGGGGGGSTTEEEEE
T ss_pred             CCCEEEECCCCCCCCCCHHHHHCCCCCCCCCC
T ss_conf             75200313777777761788870577766788


No 56 
>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]}
Probab=36.60  E-value=13  Score=15.48  Aligned_cols=68  Identities=9%  Similarity=0.143  Sum_probs=47.1

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEECCCCCEEE-EEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             08999984999746999999999759848771110245657689-99999628777898999999999998725
Q T0613             5 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFF-MRVVFNAAAKVIPLASLRTGFGVIAAKFT   77 (287)
Q Consensus         5 ~~VLTv~gpDr~GIVA~Vt~~Lae~g~NI~disQf~d~~~g~Ff-Mri~~~~~~~~~~~~~L~~al~~la~~~~   77 (287)
                      .|-+.++|++..+.+..|...+..+-.....+++. .--+|.|. .++.+..    -+.+++.+-+.++.+.=+
T Consensus        14 ~y~~KvIg~~~~~~~~~v~~i~~~~~~~~~~v~~k-~Ss~GkY~Svtv~i~~----~s~~qv~~iY~~l~~~~~   82 (87)
T d1rwua_          14 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVK-PSSKGNYHSVSITINA----THIEQVETLYEELGKIDI   82 (87)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCEEEE-ESSCSSEEEEEEEECC----SSHHHHHHHHHHHSCSSS
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEE-ECCCCEEEEEEEEEEE----ECHHHHHHHHHHHHHCCC
T ss_conf             88448996288006899999998737897754131-1599727898988998----087999999999860897


No 57 
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]}
Probab=33.95  E-value=12  Score=15.78  Aligned_cols=11  Identities=9%  Similarity=0.132  Sum_probs=4.5

Q ss_pred             CCCCEEECCCC
Q ss_conf             69959982888
Q T0613           136 GDIPFYHFPVN  146 (287)
Q Consensus       136 ~~Ip~~~~~~~  146 (287)
                      .++|++++|-+
T Consensus        85 ~~~pv~~i~GN   95 (257)
T d2yvta1          85 LGVKTFVVPGK   95 (257)
T ss_dssp             TCSEEEEECCT
T ss_pred             CCCCEEEEECC
T ss_conf             39948999477


No 58 
>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]}
Probab=32.34  E-value=8.8  Score=16.73  Aligned_cols=94  Identities=13%  Similarity=0.059  Sum_probs=61.0

Q ss_pred             CCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHH---HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH-
Q ss_conf             63427999806787779999999668999438999728867---89999995699599828888887899999999998-
Q T0613            87 TRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPR---ETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIA-  162 (287)
Q Consensus        87 ~~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~---~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~-  162 (287)
                      -+.++.++.-|++|...+|...++.|...-.+--=-.-.|.   ..+..|+++++....-.-+ .+..-|=+.-++.++ 
T Consensus        59 ~P~N~g~~gkGn~s~~~~l~eqi~aGa~GlKiHEDwGatpa~id~~L~vad~~dvqv~iHtDt-lNE~gfve~T~~a~~g  137 (390)
T d4ubpc2          59 LPINVGILGKGHGSSIAPIMEQIDAGAAGLKIHEDWGATPASIDRSLTVADEADVQVAIHSDT-LNEAGFLEDTLRAING  137 (390)
T ss_dssp             CSSEEEEEEECCCSSHHHHHHHHHHTCCEEEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCT-TCSSCCHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCEEHHHHHHHHCC
T ss_conf             782311523266698679999998655005013113647789999999864059268985387-5101011658998679


Q ss_pred             -------------HCCCCEEEEECCCCCCCHH
Q ss_conf             -------------4489999981221017978
Q T0613           163 -------------QTHTDLVVLARYMQILSDE  181 (287)
Q Consensus       163 -------------~~~~DlivLAgym~iL~~~  181 (287)
                                   .+.||++.++||-.+||..
T Consensus       138 RtiH~~HtEGaGGGHaPDii~~~g~~nvLpsS  169 (390)
T d4ubpc2         138 RVIHSFHVEGAGGGHAPDIMAMAGHPNVLPSS  169 (390)
T ss_dssp             CCEEETTTTSTTSSSTTTGGGGGGSTTEEEBC
T ss_pred             CEEECCCCCCCCCCCCCHHHHHCCCCCCCCCC
T ss_conf             62111467888889883268763778655789


No 59 
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1 GatZ {Escherichia coli [TaxId: 562]}
Probab=31.58  E-value=16  Score=14.95  Aligned_cols=39  Identities=15%  Similarity=0.201  Sum_probs=16.3

Q ss_pred             HHHHHHHHCCCCCCEEEEEEECCHH---HHHHHHHHCCCCEEE
Q ss_conf             9999999668999438999728867---899999956995998
Q T0613           103 ADILYRWRVGDLHMIPTAIVSNHPR---ETFSGFDFGDIPFYH  142 (287)
Q Consensus       103 ~all~~~~~g~L~~ei~~Visn~~~---~~~~~a~~~~Ip~~~  142 (287)
                      ++|+.+.++|+ +.-|..|.|+|+.   +..+.|...+.|...
T Consensus         2 ~~~~~~~~~g~-~~gi~SvCsa~p~Vi~Aal~~a~~~~~pvli   43 (420)
T d2fiqa1           2 KTLIARHKAGE-HIGICSVCSAHPLVIEAALAFDRNSTRKVLI   43 (420)
T ss_dssp             HHHHHHHHTTC-CBCEEEECCCCHHHHHHHHHHTTTSCCCEEE
T ss_pred             HHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             56788740899-7703326789999999999999854997899


No 60 
>d1woqa2 c.55.1.10 (A:140-263) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}
Probab=30.88  E-value=17  Score=14.88  Aligned_cols=48  Identities=15%  Similarity=0.074  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf             9999999984489999981221017978998417998983304278766
Q T0613           154 EAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFK  202 (287)
Q Consensus       154 e~~l~~~l~~~~~DlivLAgym~iL~~~~~~~~~~riiNiHpSlLP~f~  202 (287)
                      ...+..+..-++||.||+-|-+--..+.|+...+.+ +.|-||-|....
T Consensus        64 a~~l~~~~~~~dPe~IVlGGgi~~~~~~~~~~l~~~-~~i~~a~l~~~A  111 (124)
T d1woqa2          64 QRYFSHVEFLFSPELFIVGGGISKRADEYLPNLRLR-TPIVPAVLRNEA  111 (124)
T ss_dssp             HHHHHHHHHHHCCSEEEEESGGGGGGGGTGGGCCCS-SCEEECSCSTTH
T ss_pred             HHHHHHHHHHHCCCEEEECCHHHHCHHHHHHHHHCC-CEEEECCCCCCH
T ss_conf             999999999869898999362763758774440025-769956747808


No 61 
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=29.74  E-value=17  Score=14.75  Aligned_cols=88  Identities=10%  Similarity=0.094  Sum_probs=52.2

Q ss_pred             CCCCCEEEEEECCC--CCHHHHHH--HHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             56342799980678--77799999--996689994389997288678999999569959982888888789999999999
Q T0613            86 ETRRKVMLLVSQSD--HCLADILY--RWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALI  161 (287)
Q Consensus        86 ~~~~riavlvSg~g--~~l~all~--~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l  161 (287)
                      ++++|+.+.--|.-  |+-.+=.-  ....|-+.+.=..-.+ -+. ....+...+....++......-.+.-.++.+.|
T Consensus        33 g~rP~v~la~lG~~a~h~ara~f~~n~f~~gGfev~~~~~~~-~~e-~v~aa~~~~a~vvvicssd~~y~~~~~~~~~aL  110 (163)
T d7reqb2          33 SERPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGT-TAE-IVEAFKKSGAQVADLCSSAKVYAQQGLEVAKAL  110 (163)
T ss_dssp             SSCCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEESCC-HHH-HHHHHHHHTCSEEEEECCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCC-CHH-HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             899869987679744300079999999981686015688889-489-999999479988998457610487899999999


Q ss_pred             HHCCCCEEEEECCC
Q ss_conf             84489999981221
Q T0613           162 AQTHTDLVVLARYM  175 (287)
Q Consensus       162 ~~~~~DlivLAgym  175 (287)
                      ++-+.+.+|++|--
T Consensus       111 k~ag~~~~vlaGg~  124 (163)
T d7reqb2         111 KAAGAKALYLSGAF  124 (163)
T ss_dssp             HHTTCSEEEEESCG
T ss_pred             HHCCCCEEEEEECC
T ss_conf             85645605897068


No 62 
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}
Probab=29.64  E-value=17  Score=14.74  Aligned_cols=71  Identities=6%  Similarity=-0.035  Sum_probs=37.9

Q ss_pred             CCHHHHHHHHHCCCCCCEEEEEEECCHH-HH-HHHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             7779999999668999438999728867-89-99999569959982-888888789999999999844899999812210
Q T0613           100 HCLADILYRWRVGDLHMIPTAIVSNHPR-ET-FSGFDFGDIPFYHF-PVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ  176 (287)
Q Consensus       100 ~~l~all~~~~~g~L~~ei~~Visn~~~-~~-~~~a~~~~Ip~~~~-~~~~~~r~~~e~~l~~~l~~~~~DlivLAgym~  176 (287)
                      +++++++.   +.+  .+++.+.+.... +. ...+-++|.+..+- |.. .+. +.-.++.++.++.+.-+  ..||.+
T Consensus        57 ~~~~ell~---~~~--id~v~I~tp~~~h~~~~~~al~~gk~V~~EKPl~-~~~-~e~~~l~~~~~~~~~~~--~v~~~~  127 (181)
T d1zh8a1          57 DSYEELLE---SGL--VDAVDLTLPVELNLPFIEKALRKGVHVICEKPIS-TDV-ETGKKVVELSEKSEKTV--YIAENF  127 (181)
T ss_dssp             SCHHHHHH---SSC--CSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSS-SSH-HHHHHHHHHHHHCSSCE--EEECGG
T ss_pred             EEEECCCC---CCC--CCEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCC-CCH-HHHHHHHHHHHHHCCEE--EEEEEC
T ss_conf             32200233---333--3122012221111222322232112121478875-999-99999999999809969--999640


Q ss_pred             CCC
Q ss_conf             179
Q T0613           177 ILS  179 (287)
Q Consensus       177 iL~  179 (287)
                      ..+
T Consensus       128 R~~  130 (181)
T d1zh8a1         128 REN  130 (181)
T ss_dssp             GCC
T ss_pred             CCC
T ss_conf             056


No 63 
>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]}
Probab=29.37  E-value=12  Score=15.83  Aligned_cols=93  Identities=13%  Similarity=-0.012  Sum_probs=60.7

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHH---HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH--
Q ss_conf             3427999806787779999999668999438999728867---89999995699599828888887899999999998--
Q T0613            88 RRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPR---ETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIA--  162 (287)
Q Consensus        88 ~~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~---~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~--  162 (287)
                      +.++.++.-|++|...+|...++.|...-.|--=-.-.|.   ..+..|+++++....-.-+ .+..-|=+.-+..++  
T Consensus        59 P~N~g~~gkGn~s~~~~l~eqi~AGa~GlKiHEDwGatpa~id~~L~vad~~dvqv~iHtDt-lNE~gfvedT~~a~~gR  137 (385)
T d1ejxc2          59 PVNIGLLGKGNVSQPDALREQVAAGVIGLKIHEDWGATPAAIDCALTVADEMDIQVALHSDT-LNESGFVEDTLAAIGGR  137 (385)
T ss_dssp             SSEEEEEEECCCSSHHHHHHHHHHTCSEEEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCT-TCSSCCHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC-CCCCCCCHHHHHHHCCC
T ss_conf             83310521166698689999997113214477523567589999987675418358976053-54002002148875797


Q ss_pred             ------------HCCCCEEEEECCCCCCCHH
Q ss_conf             ------------4489999981221017978
Q T0613           163 ------------QTHTDLVVLARYMQILSDE  181 (287)
Q Consensus       163 ------------~~~~DlivLAgym~iL~~~  181 (287)
                                  .+.||+|.++|+-.+||..
T Consensus       138 tiH~~H~EGaGGGHAPDii~~~~~~nvlpsS  168 (385)
T d1ejxc2         138 TIHTFHTEGAGGGHAPDIITACAHPNILPSS  168 (385)
T ss_dssp             CEEESSTTSTTSSSTTTGGGGGGCTTEEEEE
T ss_pred             CEEEEECCCCCCCCCCHHHHHHCCCCCCCCC
T ss_conf             3033202567778663156762468535789


No 64 
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=27.64  E-value=19  Score=14.51  Aligned_cols=66  Identities=12%  Similarity=0.259  Sum_probs=46.1

Q ss_pred             EEEEECCHHHHHHHHHHCCCC-EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHCCCCE
Q ss_conf             999728867899999956995-9982888888789999999999844899999812-21017978998417998
Q T0613           119 TAIVSNHPRETFSGFDFGDIP-FYHFPVNKDTRRQQEAAITALIAQTHTDLVVLAR-YMQILSDEMSARLAGRC  190 (287)
Q Consensus       119 ~~Visn~~~~~~~~a~~~~Ip-~~~~~~~~~~r~~~e~~l~~~l~~~~~DlivLAg-ym~iL~~~~~~~~~~ri  190 (287)
                      .+||.|++..-+-  +-+||. ++.+    .++++.++++-++++.-++-+|+.-- +..-+++.+.+++.+++
T Consensus         1 IaViGd~dtv~GF--~LaGi~~~~~v----~~~ee~~~~i~~~~~~~digII~Ite~~a~~i~~~i~~~~~~~~   68 (76)
T d2i4ra1           1 LAVVGDPDFTIGF--MLAGISDIYEV----TSDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDEKV   68 (76)
T ss_dssp             EEEEECHHHHHHH--HHTTCCCEEEC----CSHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTTCC
T ss_pred             CEEEECHHHHHHH--HHHCCCCCCCC----CCHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHCCC
T ss_conf             9797066788999--98187764157----99899999999985079858999708999874599999986678


No 65 
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.47  E-value=19  Score=14.49  Aligned_cols=26  Identities=12%  Similarity=-0.079  Sum_probs=16.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             01575388989899999999988999
Q T0613           237 QDVERISHRDTPADLVRKGRDIERRV  262 (287)
Q Consensus       237 Q~~v~V~~~dt~e~L~~r~~~~E~~~  262 (287)
                      ...+.|.+++|+++|++++++.+..-
T Consensus        19 ~~~v~V~~~~TV~~LK~~I~~~~~ip   44 (105)
T d1v2ya_          19 VMPVVVVQNATVLDLKKAIQRYVQLK   44 (105)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf             99999799892999999999987969


No 66 
>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} SCOP: d1e20a_ d1mvna_ d1qzua_ d1qzub_ d1g63a_ d1g5qa_
Probab=27.08  E-value=19  Score=14.45  Aligned_cols=36  Identities=17%  Similarity=0.146  Sum_probs=27.0

Q ss_pred             CCCEEEEEECCCC--CHHHHHHHHHCCCCCCEEEEEEECCH
Q ss_conf             3427999806787--77999999966899943899972886
Q T0613            88 RRKVMLLVSQSDH--CLADILYRWRVGDLHMIPTAIVSNHP  126 (287)
Q Consensus        88 ~~riavlvSg~g~--~l~all~~~~~g~L~~ei~~Visn~~  126 (287)
                      ||||++-+||+..  -...|+...+.|   +++.+|+|...
T Consensus         1 kkkIllgItGs~aa~~~~~li~~L~~~---~eV~vv~S~~A   38 (182)
T d1mvla_           1 KPRVLLAASGSVAAIKFGNLCHCFTEW---AEVRAVVTKSS   38 (182)
T ss_dssp             CCEEEEEECSSGGGGGHHHHHHHHHTT---SEEEEEECTGG
T ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHCC---CCEEEEECHHH
T ss_conf             956899986147899999999998727---81799861113


No 67 
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}
Probab=26.94  E-value=19  Score=14.43  Aligned_cols=70  Identities=7%  Similarity=-0.127  Sum_probs=36.0

Q ss_pred             CHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             7799999996689994389997288678999999569959982888888789999999999844899999812
Q T0613           101 CLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLAR  173 (287)
Q Consensus       101 ~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~DlivLAg  173 (287)
                      -++-++++...-.++ +|.+|++.+.+.--...+.+++.+.+.+.....-.  -..+.......+-++||+++
T Consensus        36 li~~~i~~l~~~g~~-~i~iv~g~~~e~i~~~~~~~~i~i~~~~~~~~~Gt--~~sl~~a~~~l~~~~ii~~d  105 (229)
T d1jyka_          36 LIEYQIEFLKEKGIN-DIIIIVGYLKEQFDYLKEKYGVRLVFNDKYADYNN--FYSLYLVKEELANSYVIDAD  105 (229)
T ss_dssp             HHHHHHHHHHHTTCC-CEEEEECTTGGGGTHHHHHHCCEEEECTTTTTSCT--HHHHHTTGGGCTTEEEEETT
T ss_pred             HHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCHHHHCCCCCCCCC
T ss_conf             999999999872876-54341354411344542201213222222112333--33321101221212013235


No 68 
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=26.67  E-value=19  Score=14.40  Aligned_cols=38  Identities=11%  Similarity=0.023  Sum_probs=23.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf             157538898989999999998899999999988598389
Q T0613           238 DVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI  276 (287)
Q Consensus       238 ~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~  276 (287)
                      -.+.|.++||+++|.+++.+.+. +-+.-.+|...||+.
T Consensus        13 ~~l~V~~~~tV~~lK~~i~~~~g-i~~~~qrLi~~Gk~L   50 (73)
T d1bt0a_          13 IEIDIEPTDTIDRIKERVEEKEG-IPPVQQRLIYAGKQL   50 (73)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHC-CCGGGEEEEETTEEC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHC-CCHHHEEEEECCEEC
T ss_conf             99998897819999998887859-996999989898081


No 69 
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.63  E-value=20  Score=14.39  Aligned_cols=38  Identities=8%  Similarity=-0.052  Sum_probs=25.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf             157538898989999999998899999999988598389
Q T0613           238 DVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI  276 (287)
Q Consensus       238 ~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~  276 (287)
                      -.+.|.++||.++|++++.+.+. +-+...+|...||..
T Consensus        14 ~~v~V~~~~tV~~lK~~I~~~~~-i~~~~q~Li~~Gk~L   51 (73)
T d1m94a_          14 VRVKCLAEDSVGDFKKVLSLQIG-TQPNKIVLQKGGSVL   51 (73)
T ss_dssp             EEEEECTTSBHHHHHHHHHHHHC-CTTTSEEEESSSCEE
T ss_pred             EEEEECCCCCHHHHHHHHHHHHC-CCCCEEEEEEEEEEE
T ss_conf             99998884809999999977550-535489999976884


No 70 
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Clostridium pasteurianum [TaxId: 1501]}
Probab=26.11  E-value=11  Score=16.00  Aligned_cols=30  Identities=10%  Similarity=-0.072  Sum_probs=14.6

Q ss_pred             CCEEEEEEECCHH-HHH-HHHHHCCCCEEECC
Q ss_conf             9438999728867-899-99995699599828
Q T0613           115 HMIPTAIVSNHPR-ETF-SGFDFGDIPFYHFP  144 (287)
Q Consensus       115 ~~ei~~Visn~~~-~~~-~~a~~~~Ip~~~~~  144 (287)
                      .++..+|++.... ..+ .-.+++|+||...+
T Consensus       233 ~A~~niv~~~~~g~~~a~~L~~~~GiP~i~~~  264 (457)
T d1miob_         233 NSDLTLSLGSYASDLGAKTLEKKCKVPFKTLR  264 (457)
T ss_dssp             SCSEEEEESHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHCCCEEECC
T ss_conf             24146536825778999999998689868458


No 71 
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.22  E-value=21  Score=14.22  Aligned_cols=62  Identities=15%  Similarity=0.091  Sum_probs=37.0

Q ss_pred             HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-----CCCC----CHHHHHHCCCCEEEECCC
Q ss_conf             9995699599828888887899999999998448999998122-----1017----978998417998983304
Q T0613           132 GFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARY-----MQIL----SDEMSARLAGRCINIHHS  196 (287)
Q Consensus       132 ~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~DlivLAgy-----m~iL----~~~~~~~~~~riiNiHpS  196 (287)
                      .+...+++....-....+   ...++++..+++++||||+..-     .+.+    +..++++-+..++=+|||
T Consensus        77 ~~~~~~~~~~~~~~~~G~---~~~~i~~~a~~~~~dlIv~g~~~~~~~~~~l~Gs~~~~ll~~~~~pVlvV~~~  147 (147)
T d1tq8a_          77 RAHNAGAKNVEERPIVGA---PVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTT  147 (147)
T ss_dssp             HHHTTTCCEEEEEEECSS---HHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECCC
T ss_pred             HHHHCCCCCEEEEEEECC---HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf             998759973899998427---69999876423513699855789986332502649999997089988999469


No 72 
>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.90  E-value=21  Score=14.18  Aligned_cols=49  Identities=22%  Similarity=0.306  Sum_probs=36.1

Q ss_pred             EEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCE
Q ss_conf             68998707888797640015753889898999999999889999999998859838982674
Q T0613           220 ATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRK  281 (287)
Q Consensus       220 ~TvH~V~~~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~v~~~k  281 (287)
                      ++|+|-.-+  +-||+-|....|..+++.+.+.+-.+..        ++   .+.+++|=|-
T Consensus         3 V~v~fk~iG--~aPilk~~~~kv~~~~~f~~vi~FLrk~--------Lk---~dsvf~Yin~   51 (84)
T d1wz3a1           3 IVVHLRATG--GAPILKQSKFKVSGSDKFANVIDFLRRQ--------LH---SDSLFVYVNS   51 (84)
T ss_dssp             EEEEEEECT--TCCCCSCCEEEEETTSBTHHHHHHHHHH--------HT---CSSCEEEEEE
T ss_pred             EEEEEEECC--CCCCCCCCEEEECCCCCHHHHHHHHHHH--------HC---CCEEEEEECC
T ss_conf             899998668--9842335458977887669999999988--------46---8809999826


No 73 
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=24.58  E-value=21  Score=14.15  Aligned_cols=104  Identities=11%  Similarity=-0.014  Sum_probs=56.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEEECC-CCCHHHHHHHHHCCCCCCEEEEEEECCHH-HHHHHHHHCCC
Q ss_conf             98999999999998725201000135634279998067-87779999999668999438999728867-89999995699
Q T0613            61 PLASLRTGFGVIAAKFTMGWHMRDRETRRKVMLLVSQS-DHCLADILYRWRVGDLHMIPTAIVSNHPR-ETFSGFDFGDI  138 (287)
Q Consensus        61 ~~~~L~~al~~la~~~~~~i~i~~~~~~~riavlvSg~-g~~l~all~~~~~g~L~~ei~~Visn~~~-~~~~~a~~~~I  138 (287)
                      .++.++...++..++-         ++++|+.+-.-|. +|-...-+-+..-.....|+...-.+.+. .-...|.+.+.
T Consensus        19 ~~e~lr~~~~~~~~~~---------gr~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~~~~e~iv~aa~~~~a   89 (168)
T d7reqa2          19 EVEEARELVEEFEQAE---------GRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADV   89 (168)
T ss_dssp             HHHHHHHHHHHHHHHH---------SSCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHH---------CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCC
T ss_conf             8999999999999860---------8998699995786177899999999998678514207876768999999971599


Q ss_pred             CEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEC
Q ss_conf             599828888887899999999998448-99999812
Q T0613           139 PFYHFPVNKDTRRQQEAAITALIAQTH-TDLVVLAR  173 (287)
Q Consensus       139 p~~~~~~~~~~r~~~e~~l~~~l~~~~-~DlivLAg  173 (287)
                      ....++....+-.+.-.++.+.|++.+ .|..|+.|
T Consensus        90 dvI~iSs~~~~~~~~~~~l~~~L~~~g~~~v~VivG  125 (168)
T d7reqa2          90 HVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVG  125 (168)
T ss_dssp             SEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             889995576533679999999998569997189983


No 74 
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]}
Probab=23.85  E-value=22  Score=14.05  Aligned_cols=65  Identities=20%  Similarity=0.213  Sum_probs=42.5

Q ss_pred             ECCCCCHHHHHHHHHCCCCCCEEEEEE-ECCHHHHHH-----HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf             067877799999996689994389997-288678999-----99956995998288888878999999999984489999
Q T0613            96 SQSDHCLADILYRWRVGDLHMIPTAIV-SNHPRETFS-----GFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLV  169 (287)
Q Consensus        96 Sg~g~~l~all~~~~~g~L~~ei~~Vi-sn~~~~~~~-----~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~Dli  169 (287)
                      +|.|+.+..+..+++.|..   +.+++ -.+|...+.     ...+.|||+.++.         |..+...+..-++|.|
T Consensus       184 ~~~gtal~~i~~a~~~gk~---~~V~v~EtRP~~qG~rlta~~L~~~gi~~t~i~---------Dsa~~~~m~~~~v~~V  251 (374)
T d2a0ua1         184 SRYGTALGVVRQLFYDGKL---ERVYACETRPWNQGARLTVYECVQEDIPCTLIC---------DGAASSLMLNRKIDAV  251 (374)
T ss_dssp             SSSCSHHHHHHHHHHTTCE---EEEEEECCTTTTHHHHTHHHHHHHTTCCEEEEC---------GGGHHHHHHHSCCCEE
T ss_pred             ECCCHHHHHHHHHHHCCCC---CEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEE---------CCCHHHHHHCCCEEEE
T ss_conf             1132246776789976986---179980464334646899999986167718995---------4525666205642589


Q ss_pred             EEE
Q ss_conf             981
Q T0613           170 VLA  172 (287)
Q Consensus       170 vLA  172 (287)
                      ++.
T Consensus       252 ivG  254 (374)
T d2a0ua1         252 VVG  254 (374)
T ss_dssp             EEC
T ss_pred             EEC
T ss_conf             852


No 75 
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}
Probab=23.14  E-value=23  Score=13.96  Aligned_cols=77  Identities=9%  Similarity=0.054  Sum_probs=38.4

Q ss_pred             CCCEEEEEECCCC---CHHHHHHHHHCCCCCCEEEEEEECCHHHHH-----------------------HHHHHCCCCEE
Q ss_conf             3427999806787---779999999668999438999728867899-----------------------99995699599
Q T0613            88 RRKVMLLVSQSDH---CLADILYRWRVGDLHMIPTAIVSNHPRETF-----------------------SGFDFGDIPFY  141 (287)
Q Consensus        88 ~~riavlvSg~g~---~l~all~~~~~g~L~~ei~~Visn~~~~~~-----------------------~~a~~~~Ip~~  141 (287)
                      +.|-.|.+.|-|+   +.++|..+.+. .+|. +.+|+.|+. ++.                       ..|+.+|+.++
T Consensus        71 p~~~vi~i~GDG~f~~~~~el~t~~~~-~l~~-~iiv~nN~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~  147 (192)
T d1ozha3          71 PERKVVSVSGDGGFLQSSMELETAVRL-KANV-LHLIWVDNG-YNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGAKGF  147 (192)
T ss_dssp             TTSEEEEEEEHHHHHHHTTHHHHHHHH-TCCE-EEEEEECSB-CHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEE
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHHHH-CCCE-EEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCE
T ss_conf             445202330464300002367777652-6750-599976798-6632310000257656675899999999998235668


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             828888887899999999998448999998
Q T0613           142 HFPVNKDTRRQQEAAITALIAQTHTDLVVL  171 (287)
Q Consensus       142 ~~~~~~~~r~~~e~~l~~~l~~~~~DlivL  171 (287)
                      .+    .+.++.+.++.+.++.-+|-+|..
T Consensus       148 ~v----~~~~el~~al~~a~~~~gp~lIeV  173 (192)
T d1ozha3         148 AV----ESAEALEPTLRAAMDVDGPAVVAI  173 (192)
T ss_dssp             EC----CSGGGHHHHHHHHHHSSSCEEEEE
T ss_pred             EE----CCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             84----799999999999997699699999


No 76 
>d1gtfa_ b.82.5.1 (A:) Trp RNA-binding attenuation protein (TRAP) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.44  E-value=9.1  Score=16.63  Aligned_cols=30  Identities=37%  Similarity=0.555  Sum_probs=21.8

Q ss_pred             HHHHCCCEEEEEEE-----EEEECCCCCCC-EEEEE
Q ss_conf             99981790855689-----98707888797-64001
Q T0613           209 QAFDRGVKLIGATA-----HYVTSALDEGP-IIDQD  238 (287)
Q Consensus       209 ~a~~~Gvk~~G~Tv-----H~V~~~lD~Gp-II~Q~  238 (287)
                      .|+++||.++|.|-     ---+|.||.|. +|+|-
T Consensus         7 KA~enGV~viGLTRG~dTkfhHtEKLDkgEvmiaQF   42 (69)
T d1gtfa_           7 KALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQF   42 (69)
T ss_dssp             EESSTTEEEEEEECSSSCCEEEEEEECTTCEEEEEC
T ss_pred             EEECCCEEEEEEECCCCCCCCCHHHCCCCCEEEEEE
T ss_conf             960088389976037765302131147772999985


No 77 
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Probab=22.10  E-value=24  Score=13.83  Aligned_cols=63  Identities=16%  Similarity=0.083  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEEEEC-CHHHHH--H---HHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             787779999999668999438999728-867899--9---9995699599828888887899999999998448999998
Q T0613            98 SDHCLADILYRWRVGDLHMIPTAIVSN-HPRETF--S---GFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVL  171 (287)
Q Consensus        98 ~g~~l~all~~~~~g~L~~ei~~Visn-~~~~~~--~---~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~DlivL  171 (287)
                      .|+-|..+..+.+.|..   +.+++.. +|...+  +   ...+.|||+.+++         |.++.-.+..-.+|.|++
T Consensus       162 ~gta~~~~~~a~~~g~~---~~v~v~EsrP~~qG~~lta~~L~~~gi~~t~I~---------Dsa~~~~m~~~~vd~Viv  229 (340)
T d1t9ka_         162 YGTALGVIRAAVESGKR---IRVFADETRPYLQGARLTAWELMKDGIEVYVIT---------DNMAGWLMKRGLIDAVVV  229 (340)
T ss_dssp             SCSHHHHHHHHHHTTCC---EEEEEECCTTTTHHHHTHHHHHHTTTCEEEEEC---------GGGHHHHHHTTCCSEEEE
T ss_pred             CHHHHHHHHHHHHCCCE---EEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE---------CCHHHHHHHHCCCCEEEE
T ss_conf             02256677887635944---799980489877427887778875598469972---------430666653055446875


Q ss_pred             E
Q ss_conf             1
Q T0613           172 A  172 (287)
Q Consensus       172 A  172 (287)
                      .
T Consensus       230 G  230 (340)
T d1t9ka_         230 G  230 (340)
T ss_dssp             C
T ss_pred             C
T ss_conf             0


No 78 
>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=22.02  E-value=24  Score=13.82  Aligned_cols=87  Identities=13%  Similarity=-0.047  Sum_probs=48.2

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf             42799980678777999999966899943899972886789999995699599828888887899999999998448999
Q T0613            89 RKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDL  168 (287)
Q Consensus        89 ~riavlvSg~g~~l~all~~~~~g~L~~ei~~Visn~~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~~~~~Dl  168 (287)
                      +|++|+.+|.-=.--      .+.--+.+|  .=||..-... ..+++|+.......-.++++.-.+++.+.+++  .|+
T Consensus         1 Prv~iistG~El~~~------~~~~~~g~i--~dsn~~~l~~-~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~--~Dl   69 (148)
T d1uz5a3           1 PKVAVISTGNEIVPP------GNELKPGQI--YDINGRALCD-AINELGGEGIFMGVARDDKESLKALIEKAVNV--GDV   69 (148)
T ss_dssp             CEEEEEEECTTEECT------TSCCCTTCE--ECCHHHHHHH-HHHHHTSEEEEEEEECSSHHHHHHHHHHHHHH--CSE
T ss_pred             CEEEEEECCHHHCCC------CCCCCCCCE--EECCHHHHHH-HHHCCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCE
T ss_conf             989999287220479------996999988--5577398997-55314533045466064788888999864134--668


Q ss_pred             EEEECCCCCCC----HHHHHHC
Q ss_conf             99812210179----7899841
Q T0613           169 VVLARYMQILS----DEMSARL  186 (287)
Q Consensus       169 ivLAgym~iL~----~~~~~~~  186 (287)
                      |+.-|=+-.=.    .+.++++
T Consensus        70 iIttGG~s~g~~D~~~~~l~~~   91 (148)
T d1uz5a3          70 VVISGGASGGTKDLTASVIEEL   91 (148)
T ss_dssp             EEEECCC-----CHHHHHHHHH
T ss_pred             EEECCCCCCCHHHHHHHHHHHC
T ss_conf             9987875554146799999981


No 79 
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}
Probab=21.77  E-value=24  Score=13.79  Aligned_cols=39  Identities=8%  Similarity=0.091  Sum_probs=21.9

Q ss_pred             CCCEEEEEECCCC---CHHHHHHHHHCCCCCCEEEEEEECCHHHH
Q ss_conf             3427999806787---77999999966899943899972886789
Q T0613            88 RRKVMLLVSQSDH---CLADILYRWRVGDLHMIPTAIVSNHPRET  129 (287)
Q Consensus        88 ~~riavlvSg~g~---~l~all~~~~~g~L~~ei~~Visn~~~~~  129 (287)
                      +.|-++.++|-|+   ++++|..+.+.+ ||  +..||-|+..++
T Consensus        69 p~~~vv~i~GDGsf~m~~~eL~ta~~~~-lp--i~iiV~nN~~~~  110 (229)
T d2djia3          69 PDRQVWNIIGDGAFSMTYPDVVTNVRYN-MP--VINVVFSNTEYA  110 (229)
T ss_dssp             TTSCEEEEEEHHHHHHHGGGHHHHHHTT-CC--CEEEEEECSBCT
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCC-CC--CEEEEECCCHHH
T ss_conf             3543222455654222221355540236-77--207996780665


No 80 
>d1gtfa_ b.82.5.1 (A:) Trp RNA-binding attenuation protein (TRAP) {Bacillus stearothermophilus [TaxId: 1422]} SCOP: d1gtfc_ d1gtfm_ d1c9sg_ d1gtfl_ d1gtfb_ d1c9sc_ d1utvc_ d1gtfj_ d1c9sj_ d2exta1 d1wapa_ d1wapb_
Probab=21.72  E-value=9.6  Score=16.47  Aligned_cols=30  Identities=37%  Similarity=0.555  Sum_probs=21.7

Q ss_pred             HHHHCCCEEEEEEE-----EEEECCCCCCC-EEEEE
Q ss_conf             99981790855689-----98707888797-64001
Q T0613           209 QAFDRGVKLIGATA-----HYVTSALDEGP-IIDQD  238 (287)
Q Consensus       209 ~a~~~Gvk~~G~Tv-----H~V~~~lD~Gp-II~Q~  238 (287)
                      .|+++||.++|.|-     ---+|.||.|. .|+|-
T Consensus         7 KA~EnGV~viGLTRG~dTkfhHsEKLDkgEvmiaQF   42 (70)
T d1gtfa_           7 KALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQF   42 (70)
T ss_dssp             EESSTTEEEEEEECSSSCCEEEEEEECTTCEEEEEC
T ss_pred             EEECCCEEEEEEECCCCCCEECCCCCCCCCEEEEEE
T ss_conf             870148379887428755210013356575899873


No 81 
>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.53  E-value=24  Score=13.75  Aligned_cols=78  Identities=14%  Similarity=0.101  Sum_probs=51.0

Q ss_pred             CCCEEEEEEECC----HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCCHHHHHHCC
Q ss_conf             994389997288----6789999995699599828888887899999999998--4489999981221017978998417
Q T0613           114 LHMIPTAIVSNH----PRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIA--QTHTDLVVLARYMQILSDEMSARLA  187 (287)
Q Consensus       114 L~~ei~~Visn~----~~~~~~~a~~~~Ip~~~~~~~~~~r~~~e~~l~~~l~--~~~~DlivLAgym~iL~~~~~~~~~  187 (287)
                      +.|++...-||.    ++.++..+ ..|||.+-  ++..+.+++..-+...|.  ..+||+|+=-|--      +.... 
T Consensus        68 ~GA~V~~~~~Np~STQDdvaAaL~-~~Gi~VfA--~~g~~~eey~~~~~~~L~~~~~~P~liiDDG~D------l~~~~-  137 (267)
T d1li4a2          68 LGAEVQWSSCNIFSTQDHAAAAIA-KAGIPVYA--WKGETDEEYLWCIEQTLYFKDGPLNMILDDGGD------LTNLI-  137 (267)
T ss_dssp             TTCEEEEECSSTTCCCHHHHHHHH-HTTCCEEE--CTTCCHHHHHHHHHTTTEETTEECSEEEESSSH------HHHHH-
T ss_pred             CCCCEEEECCCCCCCCCCCEEEEC-CCCCEEEE--ECCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHH------HHHHH-
T ss_conf             468689841675523553101212-68826787--569998899999999985337997688713566------78752-


Q ss_pred             CCEEEECCCCCCCCCCC
Q ss_conf             99898330427876663
Q T0613           188 GRCINIHHSFLPGFKGA  204 (287)
Q Consensus       188 ~riiNiHpSlLP~f~G~  204 (287)
                         .+=+|.+++...|.
T Consensus       138 ---h~~~~~~~~~i~G~  151 (267)
T d1li4a2         138 ---HTKYPQLLPGIRGI  151 (267)
T ss_dssp             ---HHHCGGGGGGCCEE
T ss_pred             ---HHHCCCCCCCCEEE
T ss_conf             ---23130016861885


No 82 
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=20.57  E-value=25  Score=13.62  Aligned_cols=37  Identities=16%  Similarity=0.224  Sum_probs=19.3

Q ss_pred             CCCCEEEEEEECCCCCCHHHH-HHHHHHHCCCCEEECC
Q ss_conf             999708999984999746999-9999997598487711
Q T0613             1 MPHHQYVLTLSCPDRAGIVSA-VSTFLFENGQNILDAQ   37 (287)
Q Consensus         1 M~~~~~VLTv~gpDr~GIVA~-Vt~~Lae~g~NI~dis   37 (287)
                      |.-.+.+++..+-|.-.+=.. +..+|-.+|.++.+.-
T Consensus         1 ~~k~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG   38 (137)
T d1ccwa_           1 MEKKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIG   38 (137)
T ss_dssp             CCCCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             99987999954988358899999999997897677223


No 83 
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.54  E-value=25  Score=13.62  Aligned_cols=37  Identities=11%  Similarity=0.137  Sum_probs=23.4

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
Q ss_conf             57538898989999999998899999999988598389
Q T0613           239 VERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVI  276 (287)
Q Consensus       239 ~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~e~rv~  276 (287)
                      .+.|.++||+.+|.+++.+.+.. -+.-.+|+..|+..
T Consensus        17 ~l~v~~~~tV~~lK~~I~~~~gi-~~~~qrL~~~gk~L   53 (76)
T d1z2ma2          17 TYEVRLTQTVAHLKQQVSGLEGV-QDDLFWLTFEGKPL   53 (76)
T ss_dssp             EEEECTTSBHHHHHHHHHHHHTC-CGGGEEEEETTEEC
T ss_pred             EEEECCCCCHHHHHHHHHHHHCC-CHHHEEEEECCEEC
T ss_conf             99978978499999999877567-94373788777088


Done!