Query         T0615 3NQW, , 179 residues
Match_columns 179
No_of_seqs    119 out of 1092
Neff          7.0 
Searched_HMMs 22458
Date          Mon Jul  5 09:00:12 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0615.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0615.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1vj7_A Bifunctional RELA/SPOT; 100.0 4.2E-45       0  302.7  15.5  169    1-176    20-194 (393)
  2 2qgs_A Protein Se1688; alpha-h  97.1  0.0062 2.7E-07   36.6  10.7  110    5-130     3-130 (225)
  3 2pq7_A Predicted HD superfamil  96.8   0.025 1.1E-06   32.8  11.6  113    7-129    12-138 (220)
  4 3djb_A Hydrolase, HD family; a  96.6   0.018 8.1E-07   33.6   9.6  114    6-131     4-130 (223)
  5 3dto_A BH2835 protein; all alp  96.6   0.013 5.7E-07   34.6   8.5  113    6-130     4-129 (223)
  6 3b57_A LIN1889 protein; Q92AN1  96.3   0.019 8.6E-07   33.5   8.2  109    6-130     4-130 (209)
  7 3kh1_A Predicted metal-depende  96.1   0.069 3.1E-06   30.0  13.3  128    1-134     2-153 (200)
  8 2paq_A 5'-deoxynucleotidase YF  95.5   0.038 1.7E-06   31.6   6.8  103   33-137    32-157 (201)
  9 2pjq_A Uncharacterized protein  95.4   0.054 2.4E-06   30.7   7.2  112    7-130    10-135 (231)
 10 3ccg_A HD superfamily hydrolas  90.5    0.77 3.4E-05   23.4  11.2  141   33-177    20-190 (190)
 11 2cqz_A 177AA long hypothetical  90.3    0.69 3.1E-05   23.7   6.3   90   33-129    33-133 (177)
 12 3gw7_A Uncharacterized protein  90.0   0.055 2.4E-06   30.6   0.5   33   34-66     27-62  (239)
 13 2o08_A BH1327 protein; NP_2421  87.4    0.36 1.6E-05   25.4   3.2   35   32-66     18-55  (188)
 14 2ogi_A Hypothetical protein SA  86.8    0.41 1.8E-05   25.1   3.2   34   33-66     27-63  (196)
 15 2gz4_A Hypothetical protein AT  86.7     0.4 1.8E-05   25.2   3.1   36   32-67     53-90  (207)
 16 2q14_A Phosphohydrolase; BT420  81.7    0.55 2.5E-05   24.3   2.1   57    7-64     25-98  (410)
 17 3irh_A HD domain protein; phos  80.6    0.64 2.8E-05   23.9   2.1   56    8-64     57-136 (480)
 18 1xx7_A Oxetanocin-like protein  79.0     2.8 0.00012   19.9   7.2   89   33-129    38-138 (184)
 19 2hek_A Hypothetical protein; p  78.3    0.38 1.7E-05   25.3   0.3   58    7-64     20-86  (371)
 20 1ynb_A Hypothetical protein AF  68.6       5 0.00022   18.3   5.2   82   32-129    38-130 (173)
 21 3hc1_A Uncharacterized HDOD do  66.8     5.5 0.00024   18.0   7.4  102   32-133   118-248 (305)
 22 2dqb_A Deoxyguanosinetriphosph  63.8       5 0.00022   18.3   3.4  120    7-127    47-200 (376)
 23 2pgs_A Putative deoxyguanosine  59.3     3.8 0.00017   19.0   2.1   58    7-64     34-111 (451)
 24 2huo_A Inositol oxygenase; pro  55.9     8.5 0.00038   16.8   4.5   55    9-66     77-131 (289)
 25 2ibn_A Inositol oxygenase; red  55.5     8.7 0.00039   16.8   4.1   55    8-65     37-91  (250)
 26 3bg2_A DGTP triphosphohydrolas  51.3     6.1 0.00027   17.7   2.1   58    7-64     36-118 (444)
 27 1tbf_A CGMP-specific 3',5'-cyc  50.2      10 0.00047   16.2   3.6   51   30-81     97-166 (347)
 28 2our_A CAMP and CAMP-inhibited  42.6      13 0.00058   15.7   2.6   62   25-86     71-148 (331)
 29 2r8q_A Class I phosphodiestera  41.2      14 0.00064   15.4   2.8   42   25-66     91-144 (359)
 30 3i7a_A Putative metal-dependen  37.9      14 0.00061   15.5   2.2   98   32-129   117-239 (281)
 31 1vqr_A Hypothetical protein CJ  36.2      17 0.00077   14.9   4.5   33   33-65    125-161 (297)
 32 3m1t_A Putative phosphohydrola  35.3      18  0.0008   14.8  10.3  100   31-130   104-229 (275)
 33 3dyn_A High affinity CGMP-spec  33.2      16  0.0007   15.1   1.8   39   28-66     69-119 (329)
 34 3itu_A CGMP-dependent 3',5'-cy  32.9      16  0.0007   15.1   1.8   54   26-80     74-146 (345)
 35 3ljx_A MMOQ response regulator  32.1      20  0.0009   14.5   4.0   34   32-65    108-145 (288)
 36 3bjc_A CGMP-specific 3',5'-cyc  29.2      22   0.001   14.2   3.6   56   30-85    612-685 (878)
 37 3ibj_A CGMP-dependent 3',5'-cy  27.9      21 0.00092   14.4   1.7   42   26-67    435-488 (691)
 38 2ae8_A IGPD, imidazoleglycerol  23.8     3.3 0.00015   19.4  -3.0   49   29-81     58-111 (221)
 39 2f1d_A IGPD 1, imidazoleglycer  22.9     3.3 0.00015   19.4  -3.1   49   29-81     40-93  (207)
 40 1so2_A CGMP-inhibited 3',5'-cy  21.8      31  0.0014   13.3   3.0   20   26-45     76-97  (420)
 41 1taz_A Calcium/calmodulin-depe  20.3      33  0.0015   13.1   2.8   50   31-81     79-147 (365)

No 1  
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, manganese, GDP, PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00  E-value=4.2e-45  Score=302.68  Aligned_cols=169  Identities=30%  Similarity=0.399  Sum_probs=153.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             98543689999999999970267657888872568889999999971036889999999997677514512889998518
Q T0615             1 MATYPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLFG   80 (179)
Q Consensus         1 ~~~~~~~~~~~A~~~A~~~H~gq~rk~g~~~PY~~H~~~Va~il~~~~~~~D~~~i~AalLHDvvEDt~~t~~~l~~~FG   80 (179)
                      |++.....+.+|+.||.++|.||+||||+  ||++||++||.+|+..+  .|+++++||||||++|||++|.++|++.||
T Consensus        20 l~~~d~~~i~kA~~~A~~~H~gQ~RksG~--pyi~Hp~~Va~iL~~l~--~D~~ti~AaLLHDvvEDt~~t~eeI~~~FG   95 (393)
T 1vj7_A           20 MNETDAAFVKKALDYATAAHFYQVRKSGE--PYIVHPIQVAGILADLH--LDAVTVACGFLHDVVEDTDITLDNIEFDFG   95 (393)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTTCBCTTSC--BTTHHHHHHHHHHHHTT--CCHHHHHHHHHTTHHHHSSCCHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf             99988999999999999996788189998--38999999999998839--999999999704255136878999987502


Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHH------HHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             889999997014445783689999999------98756889989899989868888873596789999999999999999
Q T0615            81 PDVCGLVREVTDDKSLEKQERKRLQIE------NAAKSSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVWAKKV  154 (179)
Q Consensus        81 ~~Va~lV~~lT~~~~~~~~~~~~~~~~------~~~~~d~~v~lIKLADrl~Nlr~l~~~~~~~~~~~a~e~~~~ya~~l  154 (179)
                      ++|+.+|.++|+++.++...+...+..      ..++.|+||++|||||||||||++...|+++++++++||+.+|+|  
T Consensus        96 ~~Va~lV~~vtkl~~~~~~~~~~~~a~~~Rkmlla~~~DiRVvlIKLADRLhnmrtl~~~~~~kq~~iA~ETl~iyaP--  173 (393)
T 1vj7_A           96 KDVRDIVDGVTKLGKVEYKSHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAP--  173 (393)
T ss_dssp             HHHHHHHHHHHHHC--------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHHHHHHHHHTHHH--
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--
T ss_conf             478888776530120000011112479999999984678608741899999999876109999999999999999999--


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             9985058888999999999962
Q T0615           155 VDNLRGTNANLELKLDEIFRQR  176 (179)
Q Consensus       155 l~~~~~~~~~L~~el~~~~~~~  176 (179)
                      ++++.|+ +.++|||||+.++.
T Consensus       174 LA~RLGi-~~ik~ELEDL~Fk~  194 (393)
T 1vj7_A          174 LAHRLGI-SRIKWELEDLAFRY  194 (393)
T ss_dssp             HHHHTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHCC-HHHHHHHHHHHHHH
T ss_conf             8877140-68999999999976


No 2  
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: a.211.1.1
Probab=97.14  E-value=0.0062  Score=36.60  Aligned_cols=110  Identities=19%  Similarity=0.263  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHHHHHHCCCHHHHHH----
Q ss_conf             36899999999999702676578888725688899999999----7103688999999999767751451288999----
Q T0615             5 PSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILS----VEACITDEGVLMAALLHDVVEDTDASFEDVE----   76 (179)
Q Consensus         5 ~~~~~~~A~~~A~~~H~gq~rk~g~~~PY~~H~~~Va~il~----~~~~~~D~~~i~AalLHDvvEDt~~t~~~l~----   76 (179)
                      ..+.+.++.+|....+.+.  .+|-   =+.|...|.....    .++......+++||||||+. |....-+...    
T Consensus         3 ~~~~i~~~~~~vk~~~~~~--~~~H---d~~H~~RV~~~A~~Ia~~e~~~D~~vv~lAAlLHDig-d~k~~~e~~~a~~a   76 (225)
T 2qgs_A            3 SRMKIKKAYEYMKSFHQHD--TTGH---DIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTV-DSKLTDEILAYDQL   76 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTTC--SSCH---HHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTT-CCSSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCC--CCCC---CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC-CCCCCCHHHHHHHH
T ss_conf             5789999999999986389--9877---9999999999999999884988499999999986234-33356728889999


Q ss_pred             ----HH--CCHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             ----85--18889----99999701444578368999999998756889989899989868888
Q T0615            77 ----KL--FGPDV----CGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLRD  130 (179)
Q Consensus        77 ----~~--FG~~V----a~lV~~lT~~~~~~~~~~~~~~~~~~~~~d~~v~lIKLADrl~Nlr~  130 (179)
                          ..  |.++.    ..+|...+-....          ......++.+.+|.=||||+.+..
T Consensus        77 ~~~L~~~g~~~~~i~~I~~~I~~hs~~~~~----------~~~~p~tle~~Iv~DADrLDalGA  130 (225)
T 2qgs_A           77 KQFLSTLDLSSEISQQVLYIIKHMSYRAGK----------NNHVKLSIDGEIVRDADRLDAIGA  130 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTTC-----------------CCCCCHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCCCCC----------CCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             999988799999999999999970755788----------899976889999998999986554


No 3  
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=96.81  E-value=0.025  Score=32.79  Aligned_cols=113  Identities=16%  Similarity=0.186  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH---HHHCCCCCH-HHHHHHHHHHHHHHCCCHHHHHHHHC--C
Q ss_conf             89999999999970267657888872568889999999---971036889-99999999767751451288999851--8
Q T0615             7 AKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTIL---SVEACITDE-GVLMAALLHDVVEDTDASFEDVEKLF--G   80 (179)
Q Consensus         7 ~~~~~A~~~A~~~H~gq~rk~g~~~PY~~H~~~Va~il---~~~~~~~D~-~~i~AalLHDvvEDt~~t~~~l~~~F--G   80 (179)
                      ..+.+...|......+....| -+   +.|...|+...   +... +.|. .+.+||||||+-...     ......  +
T Consensus        12 ~~l~~i~~~v~~~~~~~~d~s-Hd---~~H~~RV~~~A~~Ia~~e-~~D~~vv~lAAlLHDig~~~-----~~~~~~~h~   81 (220)
T 2pq7_A           12 PHLREILNIVREAFKDYDDPA-HD---ISHTFRVMENASEIASRE-KCDLQKAIIAALLHDIKRPH-----EALTGVDHA   81 (220)
T ss_dssp             TTHHHHHHHHHHHHTTCCCTT-TS---HHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHTTTTHHH-----HHHHCCCHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCC-CC---HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH-----HCCCCCCHH
T ss_conf             999999999999986589987-77---699999999999999884-99999999999988751132-----067743488


Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHH--HHHH------HHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             88999999701444578368999--9999------9875688998989998986888
Q T0615            81 PDVCGLVREVTDDKSLEKQERKR--LQIE------NAAKSSCRAKLIKLADKLDNLR  129 (179)
Q Consensus        81 ~~Va~lV~~lT~~~~~~~~~~~~--~~~~------~~~~~d~~v~lIKLADrl~Nlr  129 (179)
                      ..-+.++...-...+.+......  ..+.      .....++.+.+|.-||||+.+.
T Consensus        82 ~~~~~~a~~~L~~~~~~~~~i~~I~~aI~~H~~~~~~~~~s~e~~Iv~DAD~LDaiG  138 (220)
T 2pq7_A           82 ESGAEYASGLLPTMGFDISFVAEVSKAIRSHRYSGGLTPTSLTGKILQDADRLDAIG  138 (220)
T ss_dssp             HHHHHHHHHHGGGGTCCHHHHHHHHHHHHHCC-----CCCSHHHHHHHHHHHGGGSS
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             999999999998769998999999999998087568777764989999999997334


No 4  
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=96.61  E-value=0.018  Score=33.63  Aligned_cols=114  Identities=19%  Similarity=0.207  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCCHH-HHHHHHHHHHHHHCCCH--------HHH
Q ss_conf             6899999999999702676578888725688899999999710--368899-99999997677514512--------889
Q T0615             6 SAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEA--CITDEG-VLMAALLHDVVEDTDAS--------FED   74 (179)
Q Consensus         6 ~~~~~~A~~~A~~~H~gq~rk~g~~~PY~~H~~~Va~il~~~~--~~~D~~-~i~AalLHDvvEDt~~t--------~~~   74 (179)
                      .+.+.++.+|......+..  +|-+   +.|..+|+.+....+  .+.|.+ +..||||||+...-...        ..+
T Consensus         4 ~e~i~~~~~~v~~~~~~~~--~~Hd---~~H~~RV~~~A~~Ia~~eg~D~~vv~~AAlLHDIg~~k~~~~~~~~~~~~~~   78 (223)
T 3djb_A            4 QEKIEKTITFVKHILEKDA--SGHD---WYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEKLNESEEAGMKKVSD   78 (223)
T ss_dssp             HHHHHHHHHHHHHHTTSSS--CTTT---HHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC--CCSSSTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCC--CCCC---HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             9999999999999962787--7688---6999999999999999849999999999988623764355317668999999


Q ss_pred             HHHH--CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9985--18889999997014445783689999999987568899898999898688888
Q T0615            75 VEKL--FGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLRDL  131 (179)
Q Consensus        75 l~~~--FG~~Va~lV~~lT~~~~~~~~~~~~~~~~~~~~~d~~v~lIKLADrl~Nlr~l  131 (179)
                      +...  |.++....|..+-...+-+...       .....++.+.+|.-|||++.|..+
T Consensus        79 ~L~~~~~~~~~i~~I~~iI~~Hsy~~g~-------~~~~~slEa~Iv~dADrLDAlGai  130 (223)
T 3djb_A           79 WLEELHVEEEESKHVLHIIANMSYKGGH-------GGKVESIEGKLVQDADRLDALGAI  130 (223)
T ss_dssp             HHHHTCCCHHHHHHHHHHTTCCC------------------HHHHHHHHHHHTTTSSHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHCCCCCCC-------CCCCCCHHHHHHHHHHHHHHCCCH
T ss_conf             9998699999999999999977997899-------999869999999938987201122


No 5  
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=96.56  E-value=0.013  Score=34.62  Aligned_cols=113  Identities=16%  Similarity=0.173  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH---HHHCCCCCHHHHHHHHHHHHHHHCCCHH----H----H
Q ss_conf             689999999999970267657888872568889999999---9710368899999999976775145128----8----9
Q T0615             6 SAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTIL---SVEACITDEGVLMAALLHDVVEDTDASF----E----D   74 (179)
Q Consensus         6 ~~~~~~A~~~A~~~H~gq~rk~g~~~PY~~H~~~Va~il---~~~~~~~D~~~i~AalLHDvvEDt~~t~----~----~   74 (179)
                      .+.+.++.+|..+...++.  +|-+   +.|..+|....   +.........+.+||||||+...-....    .    .
T Consensus         4 ~~ii~~~~~~v~~~~~~~~--~~Hd---~~H~~RV~~~A~~Ia~~e~~D~~vv~lAAlLHDi~d~k~~~~~~~~~~~a~~   78 (223)
T 3dto_A            4 QAILQSAEAWVKKQLMDEY--SGHD---WYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPETAKQQLID   78 (223)
T ss_dssp             HHHHHHHHHHHHHTTTTC------C---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC-------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCC--CCCC---HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             9999999999999851688--8788---7999999999999998858889999999998000224457767777899999


Q ss_pred             HHHH--CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             9985--1888999999701444578368999999998756889989899989868888
Q T0615            75 VEKL--FGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLRD  130 (179)
Q Consensus        75 l~~~--FG~~Va~lV~~lT~~~~~~~~~~~~~~~~~~~~~d~~v~lIKLADrl~Nlr~  130 (179)
                      +...  |.+.....|..+-...+....       ......++.+.+|.=||||+.|..
T Consensus        79 ~L~~~g~~~~~i~~V~~~I~~~s~~~~-------~~~~~~t~e~~Iv~DADrLDalGA  129 (223)
T 3dto_A           79 WMEAAGVPSQKIDHTMDIINTISFKGG-------HGQSLATREAMVVQDADRLDALGA  129 (223)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHCC-----------------CCHHHHHHHHHHHGGGSSH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHCCCC-------CCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             998789999999999999999743368-------899999989999998999984664


No 6  
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=96.31  E-value=0.019  Score=33.48  Aligned_cols=109  Identities=14%  Similarity=0.183  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH---HHHCCCCC-HHHHHHHHHHHHHHHCCCH--------HH
Q ss_conf             689999999999970267657888872568889999999---97103688-9999999997677514512--------88
Q T0615             6 SAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTIL---SVEACITD-EGVLMAALLHDVVEDTDAS--------FE   73 (179)
Q Consensus         6 ~~~~~~A~~~A~~~H~gq~rk~g~~~PY~~H~~~Va~il---~~~~~~~D-~~~i~AalLHDvvEDt~~t--------~~   73 (179)
                      .+.+.++.+|....+.+..  +|-+   +.|..+|....   +... +.| ..+.+||||||+.......        ..
T Consensus         4 ~~~i~~~~~~v~~~~~~~~--~~Hd---~~H~~RV~~lA~~Ia~~e-~~D~~vv~~AAlLHDig~~k~~~~~~~~~~~a~   77 (209)
T 3b57_A            4 EEIILSAKNWMHSHFENET--TGHD---WSHIKRVWKLSKEIQSKE-GGDLFTIELAALFHDYSDIKLTTDEQEATKTLI   77 (209)
T ss_dssp             HHHHHHHHHHHHTTC--------CC---HHHHHHHHHHHHHHHHHH-CSCHHHHHHHHHHTTCCC-------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCC--CCCC---HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             9999999999999853798--8889---999999999999999884-999999999999850365335674777689999


Q ss_pred             HHHHH--CCHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             99985--18889----99999701444578368999999998756889989899989868888
Q T0615            74 DVEKL--FGPDV----CGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLRD  130 (179)
Q Consensus        74 ~l~~~--FG~~V----a~lV~~lT~~~~~~~~~~~~~~~~~~~~~d~~v~lIKLADrl~Nlr~  130 (179)
                      .+...  |.++.    ..+|...+.....          ......++.+.+|.-||||+.+..
T Consensus        78 ~~L~~~~~~~~~i~~V~~~I~~hs~~~~~----------~~~~p~s~Ea~Iv~DADrLDalGa  130 (209)
T 3b57_A           78 NWMETKEIPSELIKKIIRIIQSVSFKKGK----------NTFKALTIEEKIVQDADRLDAIGA  130 (209)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHC-------------------CCCHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHCCCC----------CCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99986799988999999999987830479----------999986999999999998752464


No 7  
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=96.07  E-value=0.069  Score=29.99  Aligned_cols=128  Identities=19%  Similarity=0.248  Sum_probs=69.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHC--CCCCC----CCCC-CCHHHHHHHHHHHHHHHCC----CCCH-HHHHHHHHHHHHHHC
Q ss_conf             985436899999999999702--67657----8888-7256888999999997103----6889-999999997677514
Q T0615             1 MATYPSAKFMECLQYAAFKHR--QQRRK----DPQE-TPYVNHVINVSTILSVEAC----ITDE-GVLMAALLHDVVEDT   68 (179)
Q Consensus         1 ~~~~~~~~~~~A~~~A~~~H~--gq~rk----~g~~-~PY~~H~~~Va~il~~~~~----~~D~-~~i~AalLHDvvEDt   68 (179)
                      |.|-++.|+.+=+.|-..+..  ...|.    +|.+ +-=-.|...||.+.....-    ..|. .++.-|++||+.|--
T Consensus         2 ~~~~~~~~~~~~~~Fl~~~~~LK~v~R~g~~~~~~r~EsvAeHS~~~al~a~~l~~~~~~~~d~~kv~~maL~HDl~E~~   81 (200)
T 3kh1_A            2 MIPFPESRLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEID   81 (200)
T ss_dssp             CCCGGGHHHHHHHHHHHHGGGGGGCEEEEECTTSSSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99998899999999999999853574276106999974599999999999998777648988989999999998889876


Q ss_pred             --CC------HHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHH---HHHHHHHCCHHHHHHHHHHHHHHH-HHHHHC
Q ss_conf             --51------2889998518889999997014445783689999---999987568899898999898688-888735
Q T0615            69 --DA------SFEDVEKLFGPDVCGLVREVTDDKSLEKQERKRL---QIENAAKSSCRAKLIKLADKLDNL-RDLQVN  134 (179)
Q Consensus        69 --~~------t~~~l~~~FG~~Va~lV~~lT~~~~~~~~~~~~~---~~~~~~~~d~~v~lIKLADrl~Nl-r~l~~~  134 (179)
                        ++      +..+..+..-.    ....+.  ..+|...+.+.   -.+.-...++.+.++|-+|++.-+ +.+...
T Consensus        82 ~GDi~~~~~~~~~~k~~~E~~----a~~~l~--~~Lp~~~~~e~~~lw~Eye~~~t~EA~~vk~~Dkle~~lq~~e~~  153 (200)
T 3kh1_A           82 AGDTFIHDEAGNEDKEERERK----AAARLF--GLLPPDQAAEYSALWQEYEARETADARFADALDRLQPLLHNFETE  153 (200)
T ss_dssp             HCCCCTTCCC---CHHHHHHH----HHHHHH--TTSCHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCHHHHHHHHHH----HHHHHH--HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             378777775348888999999----999998--757702589999999998737999999999998224999998813


No 8  
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphohydrolase, structural genomics, PSI, protein structure initiative; 2.10A {Escherichia coli K12} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=95.50  E-value=0.038  Score=31.63  Aligned_cols=103  Identities=17%  Similarity=0.158  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHH--------CCCCCH-HHHHHHHHHHHHHHC--CCH------HHHHHHHCCHHHHHHHHHHCCCCC
Q ss_conf             568889999999971--------036889-999999997677514--512------889998518889999997014445
Q T0615            33 YVNHVINVSTILSVE--------ACITDE-GVLMAALLHDVVEDT--DAS------FEDVEKLFGPDVCGLVREVTDDKS   95 (179)
Q Consensus        33 Y~~H~~~Va~il~~~--------~~~~D~-~~i~AalLHDvvEDt--~~t------~~~l~~~FG~~Va~lV~~lT~~~~   95 (179)
                      =..|...||.+....        +...|. .++..||+||+.|--  +++      ...+.+.+...-...+..+.  ..
T Consensus        32 VAeHs~~va~ia~~la~~~~~~~g~~vd~~k~~~maL~HDl~E~~~GDi~~~~k~~~~~~~~~~~~~E~~a~~~l~--~~  109 (201)
T 2paq_A           32 VSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLV--DM  109 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCCC---------CTHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--HH
T ss_conf             9999999999999999888774356779999999999710488870788755535656779999999999999988--50


Q ss_pred             CCHHHHHH--HHHHHHHHCCHHHHHHHHHHHHHHHH----HHHHCCHH
Q ss_conf             78368999--99999875688998989998986888----88735967
Q T0615            96 LEKQERKR--LQIENAAKSSCRAKLIKLADKLDNLR----DLQVNTPT  137 (179)
Q Consensus        96 ~~~~~~~~--~~~~~~~~~d~~v~lIKLADrl~Nlr----~l~~~~~~  137 (179)
                      +|...+..  .........++.+.+||.||+++.+-    ..+..+++
T Consensus       110 lp~~~~~~~~~~~e~e~~~s~Ea~lvk~aDkle~~lqa~ey~~~Gn~e  157 (201)
T 2paq_A          110 VPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYLKCLEELAAGNNE  157 (201)
T ss_dssp             SCGGGHHHHHHHHTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             878899999999975057988999999998999999999999858952


No 9  
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=95.36  E-value=0.054  Score=30.67  Aligned_cols=112  Identities=21%  Similarity=0.234  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCC-HHHHHHHHHHHHHHHCCC-----HHHHHHHH
Q ss_conf             899999999999702676578888725688899999999710--3688-999999999767751451-----28899985
Q T0615             7 AKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEA--CITD-EGVLMAALLHDVVEDTDA-----SFEDVEKL   78 (179)
Q Consensus         7 ~~~~~A~~~A~~~H~gq~rk~g~~~PY~~H~~~Va~il~~~~--~~~D-~~~i~AalLHDvvEDt~~-----t~~~l~~~   78 (179)
                      ..+....+|+.....+. . +|-+   +.|..+|........  .+.| ..+++||||||+...-..     ....+...
T Consensus        10 ~~i~~i~~~~~~~l~~~-~-~~Hd---~~H~~RV~~~A~~Ia~~E~~D~~vv~~AAlLHDi~d~k~~~~~~~~~~~~~~~   84 (231)
T 2pjq_A           10 TQLTAIQTYALQKLAHD-H-SGHG---RDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDKLMANPAKAHQDLIVQ   84 (231)
T ss_dssp             HHHHHHHHHHHTSSTTC-C-SSCS---HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC---------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC-C-CCCC---HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999999987058-7-7678---79999999999999988499999999999997003422569887899999999


Q ss_pred             -----CCHH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             -----1888-999999701444578368999999998756889989899989868888
Q T0615            79 -----FGPD-VCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLRD  130 (179)
Q Consensus        79 -----FG~~-Va~lV~~lT~~~~~~~~~~~~~~~~~~~~~d~~v~lIKLADrl~Nlr~  130 (179)
                           |.++ +..++..+.... .....      ......++.+.+|.=||||+.+..
T Consensus        85 L~~~~~~~~~i~~I~~iI~~hs-~s~~~------~~~~p~tlEa~IvqDADrLDalGA  135 (231)
T 2pjq_A           85 LNAQNVTADDQTAIFAIIDHMS-FSKSF------NGPQKLSLEGQVVQDADRLDAIGA  135 (231)
T ss_dssp             HHTTTCCHHHHHHHHHHHTSCC-TGGGG------GCCCCCCSHHHHHHHHHHHTTSHH
T ss_pred             HHCCCCCHHHHHHHHHHHHHHH-HHHCC------CCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             8719979899999999999789-87136------789986689999998998851242


No 10 
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=90.51  E-value=0.77  Score=23.39  Aligned_cols=141  Identities=15%  Similarity=0.124  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHC--CCCC-HHHHHHHHHHHHHHHCCCHHHHHHHHC---CHHHHHHHHH------------HCC-C
Q ss_conf             5688899999999710--3688-999999999767751451288999851---8889999997------------014-4
Q T0615            33 YVNHVINVSTILSVEA--CITD-EGVLMAALLHDVVEDTDASFEDVEKLF---GPDVCGLVRE------------VTD-D   93 (179)
Q Consensus        33 Y~~H~~~Va~il~~~~--~~~D-~~~i~AalLHDvvEDt~~t~~~l~~~F---G~~Va~lV~~------------lT~-~   93 (179)
                      =+.|.++||.+....+  .+.| +.+.+||+|||+=... . .+.+.+.+   +.........            +.+ .
T Consensus        20 r~~Hs~~Va~lA~~lA~~lgld~e~~~~agLlHDIGK~~-~-~~~il~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~   97 (190)
T 3ccg_A           20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKL-P-GEKIIEICTNEGYELGDEDIRNSYLLHGLAGRILAKKV   97 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS-C-HHHHHHHHHHTTCCCCHHHHTTTTC-CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-C-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             738999999999999998396999999999998805656-8-69999987642663039998756420799999998765


Q ss_pred             CCCCHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-----HHHHHH---HHHHHHCCCC
Q ss_conf             457836899999999---87568899898999898688888735967899999999-----999999---9999850588
Q T0615            94 KSLEKQERKRLQIEN---AAKSSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQ-----YFVWAK---KVVDNLRGTN  162 (179)
Q Consensus        94 ~~~~~~~~~~~~~~~---~~~~d~~v~lIKLADrl~Nlr~l~~~~~~~~~~~a~e~-----~~~ya~---~ll~~~~~~~  162 (179)
                      ..............+   ....+....+|.+||.++..|......+ .+ ..+...     ...+..   -+...-+.++
T Consensus        98 ~~~~~~~i~~ai~~H~~G~p~~~~~~~Iv~~AD~~~~~r~~~~~~~-~r-~~~~~~ld~~~~~~~~~~i~~l~~~~~~i~  175 (190)
T 3ccg_A           98 IGIDDEDVLNAIEFHTTGRPNMSLLEKIIYIADYIEPGREFKGVDE-LR-KAADEDLNKALLMSFDNTIKFVIDKGGFLH  175 (190)
T ss_dssp             TCCCCHHHHHHHHTTTTCCSSCCHHHHHHHHHHHHSTTCCCTTHHH-HH-HHHHHCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHH-HH-HHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             1367199999998338998785889999999999735899852899-99-998655149999999999999999689438


Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             889999999999626
Q T0615           163 ANLELKLDEIFRQRG  177 (179)
Q Consensus       163 ~~L~~el~~~~~~~~  177 (179)
                      |..-.-++.++.++|
T Consensus       176 P~~ve~~n~~v~~~g  190 (190)
T 3ccg_A          176 HNTIEARNYLISRKG  190 (190)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHCCC
T ss_conf             899999999986079


No 11 
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.60A {Pyrococcus horikoshii OT3}
Probab=90.30  E-value=0.69  Score=23.68  Aligned_cols=90  Identities=29%  Similarity=0.276  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHH-------CCCCC-HHHHHHHHHHHHHHHC--CCHHHHHHHH-CCHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             568889999999971-------03688-9999999997677514--5128899985-18889999997014445783689
Q T0615            33 YVNHVINVSTILSVE-------ACITD-EGVLMAALLHDVVEDT--DASFEDVEKL-FGPDVCGLVREVTDDKSLEKQER  101 (179)
Q Consensus        33 Y~~H~~~Va~il~~~-------~~~~D-~~~i~AalLHDvvEDt--~~t~~~l~~~-FG~~Va~lV~~lT~~~~~~~~~~  101 (179)
                      =-.|...||.+...+       |...| ..++..|++||+.|--  +++...-... .-.....+...+..    ..   
T Consensus        33 VAeHS~~valia~~la~~~~~~~~~vd~~k~~~maL~HDl~E~~~GDi~~~~k~~~~~~~~e~~~~~~~~~----e~---  105 (177)
T 2cqz_A           33 IADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEAIITDIPLSAQEFVDKDKAEALVFKKVFP----EF---  105 (177)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCCCTTTTTTSCHHHHHHHHHHHTCG----GG---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH----HH---
T ss_conf             99999999999999998987725565899999999985699997279998504156799999999887657----68---


Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999875688998989998986888
Q T0615           102 KRLQIENAAKSSCRAKLIKLADKLDNLR  129 (179)
Q Consensus       102 ~~~~~~~~~~~d~~v~lIKLADrl~Nlr  129 (179)
                      .......-...++.+.++|.+|+++.+-
T Consensus       106 ~~l~~Eye~~~t~Ea~~vk~~Dkl~~~l  133 (177)
T 2cqz_A          106 YELYREYQECSSPEAQLVRIADKLDMIL  133 (177)
T ss_dssp             HHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             9987998837868999999999999999


No 12 
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=90.03  E-value=0.055  Score=30.62  Aligned_cols=33  Identities=27%  Similarity=0.226  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHH
Q ss_conf             688899999999710---368899999999976775
Q T0615            34 VNHVINVSTILSVEA---CITDEGVLMAALLHDVVE   66 (179)
Q Consensus        34 ~~H~~~Va~il~~~~---~~~D~~~i~AalLHDvvE   66 (179)
                      +.|..+|........   ......+.+||||||+..
T Consensus        27 ~~Hi~RV~~~A~~Ia~~e~~D~~vv~~AALLHDIgd   62 (239)
T 3gw7_A           27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVS   62 (239)
T ss_dssp             CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCH
T ss_conf             799999999999999874988999999999734331


No 13 
>2o08_A BH1327 protein; NP_242193.1, hypothetical protein, structural genomics, joint center for structural genomics, JCSG, PSI-2; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=87.43  E-value=0.36  Score=25.45  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=23.4

Q ss_pred             CHHHHHHHHHHHH---HHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             2568889999999---9710368899999999976775
Q T0615            32 PYVNHVINVSTIL---SVEACITDEGVLMAALLHDVVE   66 (179)
Q Consensus        32 PY~~H~~~Va~il---~~~~~~~D~~~i~AalLHDvvE   66 (179)
                      ..+.|.++||.+.   +...+.....+.+||||||+=.
T Consensus        18 ~r~~Hs~~Va~~A~~lA~~lg~d~~~~~~agLLHDIGK   55 (188)
T 2o08_A           18 HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAK   55 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             57299999999999999992919999999999987326


No 14 
>2ogi_A Hypothetical protein SAG1661; NP_688652.1, conserved hypothetical protein TIGR00488, structural genomics; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=86.82  E-value=0.41  Score=25.10  Aligned_cols=34  Identities=38%  Similarity=0.340  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHC--CCCC-HHHHHHHHHHHHHH
Q ss_conf             5688899999999710--3688-99999999976775
Q T0615            33 YVNHVINVSTILSVEA--CITD-EGVLMAALLHDVVE   66 (179)
Q Consensus        33 Y~~H~~~Va~il~~~~--~~~D-~~~i~AalLHDvvE   66 (179)
                      =+.|.++||.+....+  .+.| +.+-+||||||+=.
T Consensus        27 r~~Hs~~Va~~a~~LA~~~g~d~~~~~lAgLLHDIGK   63 (196)
T 2ogi_A           27 RFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAK   63 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf             6599999999999999980959999999999987135


No 15 
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Agrobacterium tumefaciens str} SCOP: a.211.1.1
Probab=86.70  E-value=0.4  Score=25.17  Aligned_cols=36  Identities=28%  Similarity=0.305  Sum_probs=28.0

Q ss_pred             CHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             256--888999999997103688999999999767751
Q T0615            32 PYV--NHVINVSTILSVEACITDEGVLMAALLHDVVED   67 (179)
Q Consensus        32 PY~--~H~~~Va~il~~~~~~~D~~~i~AalLHDvvED   67 (179)
                      ||-  .|++-|+.++....-+.+.....+|||||.-|-
T Consensus        53 fySVAqHsvlv~~~~~~~~~~~~~~~~l~aLLHDA~Ea   90 (207)
T 2gz4_A           53 AFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEY   90 (207)
T ss_dssp             CCBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHH
T ss_conf             41399999999999998679999899999986477899


No 16 
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=81.69  E-value=0.55  Score=24.30  Aligned_cols=57  Identities=18%  Similarity=0.162  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHCCCCC------CCCCCCCHHHHHHHHHHHHHHHCCC--------C---CHHHHHHHHHHHH
Q ss_conf             8999999999997026765------7888872568889999999971036--------8---8999999999767
Q T0615             7 AKFMECLQYAAFKHRQQRR------KDPQETPYVNHVINVSTILSVEACI--------T---DEGVLMAALLHDV   64 (179)
Q Consensus         7 ~~~~~A~~~A~~~H~gq~r------k~g~~~PY~~H~~~Va~il~~~~~~--------~---D~~~i~AalLHDv   64 (179)
                      .++...-.|-+-.+--|.-      + |...-=++|.++|+.+.......        .   -..+.+||||||+
T Consensus        25 ~~iidt~~fQRLr~I~Qlg~~~~v~p-~a~HtRfeHSlGv~~la~~~~~~l~~~~~~~~~~~~~~~~~AaLlHDi   98 (410)
T 2q14_A           25 YDIVRHPLLQRLTRIKQVGLSSVVYP-GAQHTRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDI   98 (410)
T ss_dssp             HHHHHSHHHHGGGGSBTTTTTTTTCT-TCCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTT
T ss_pred             HHHCCCHHHHCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             98629976720068553787767789-982271209999999999999999860898887899999999998706


No 17 
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, PSI-2, protein structure initiative; HET: DGT DTP; 2.40A {Enterococcus faecalis V583} PDB: 2o6i_A*
Probab=80.58  E-value=0.64  Score=23.91  Aligned_cols=56  Identities=23%  Similarity=0.219  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHCCCC------CCCCCCCCHHHHHHHHHHHHHHHCC---------------C--CC-HHHHHHHHHHH
Q ss_conf             99999999999702676------5788887256888999999997103---------------6--88-99999999976
Q T0615             8 KFMECLQYAAFKHRQQR------RKDPQETPYVNHVINVSTILSVEAC---------------I--TD-EGVLMAALLHD   63 (179)
Q Consensus         8 ~~~~A~~~A~~~H~gq~------rk~g~~~PY~~H~~~Va~il~~~~~---------------~--~D-~~~i~AalLHD   63 (179)
                      ++..--.|-+-.+--|.      =+ |...-=++|.++|+.+.....-               .  .+ ..+.+||||||
T Consensus        57 ~iIdtp~fQRLR~IkQLG~~~~vyP-gA~HtRfeHSLGv~~la~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~AaLLHD  135 (480)
T 3irh_A           57 DLINSAEVQRLRRIKQLGTSSFTFH-GAEHSRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHD  135 (480)
T ss_dssp             HHHTSHHHHGGGGSBSSTTGGGTST-TCCCBHHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             8639987730255753676664578-981372109999999999999999860641113445677788999999999861


Q ss_pred             H
Q ss_conf             7
Q T0615            64 V   64 (179)
Q Consensus        64 v   64 (179)
                      +
T Consensus       136 i  136 (480)
T 3irh_A          136 V  136 (480)
T ss_dssp             T
T ss_pred             C
T ss_conf             4


No 18 
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=78.98  E-value=2.8  Score=19.86  Aligned_cols=89  Identities=26%  Similarity=0.318  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHC-------CCCCH-HHHHHHHHHHHHHHC--CCHHHHHHHHCCHHHH--HHHHHHCCCCCCCHHH
Q ss_conf             5688899999999710-------36889-999999997677514--5128899985188899--9999701444578368
Q T0615            33 YVNHVINVSTILSVEA-------CITDE-GVLMAALLHDVVEDT--DASFEDVEKLFGPDVC--GLVREVTDDKSLEKQE  100 (179)
Q Consensus        33 Y~~H~~~Va~il~~~~-------~~~D~-~~i~AalLHDvvEDt--~~t~~~l~~~FG~~Va--~lV~~lT~~~~~~~~~  100 (179)
                      =..|...||.+....+       ...|. .++..|++||+.|--  +++.. .......+-+  ..+..+.  +.  ...
T Consensus        38 VAeHs~~vA~ia~~la~~~~~~g~~vD~~k~~~maL~HDl~E~~~GDi~~~-~~~~~~k~~~e~~a~~~l~--~~--~~~  112 (184)
T 1xx7_A           38 VADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAIITDLPLS-AQKYLNKEEAEAKALKDVL--PE--YTE  112 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHHHCCCCHH-HHTTSCHHHHHHHHHHHHC--GG--GHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHCC--HH--HHH
T ss_conf             999999999999999989876355568999999999863899872798765-4023569999999998648--58--888


Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999875688998989998986888
Q T0615           101 RKRLQIENAAKSSCRAKLIKLADKLDNLR  129 (179)
Q Consensus       101 ~~~~~~~~~~~~d~~v~lIKLADrl~Nlr  129 (179)
                         ..-..-...++.+.+||.+|+++.+-
T Consensus       113 ---l~~eye~~~t~Ea~~vk~~Dkle~~l  138 (184)
T 1xx7_A          113 ---LFEEYSKALTLEGQLVKIADKLDMII  138 (184)
T ss_dssp             ---HHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             ---89998757888999999999999999


No 19 
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site and active site being FAR from EACH other, structural genomics; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=78.34  E-value=0.38  Score=25.35  Aligned_cols=58  Identities=19%  Similarity=0.277  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCC-----CCCCCHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHH
Q ss_conf             899999999999702676578-----888725688899999999710----3688999999999767
Q T0615             7 AKFMECLQYAAFKHRQQRRKD-----PQETPYVNHVINVSTILSVEA----CITDEGVLMAALLHDV   64 (179)
Q Consensus         7 ~~~~~A~~~A~~~H~gq~rk~-----g~~~PY~~H~~~Va~il~~~~----~~~D~~~i~AalLHDv   64 (179)
                      .|+..--.|=+-.+.-|.=.+     |...-=++|.++|+.+....+    ......+-+||||||+
T Consensus        20 ~rii~s~~frRL~~~~Q~~~~~~v~p~a~htR~~HSLgV~~lar~i~~~L~~~~~~~v~~aaLlHDI   86 (371)
T 2hek_A           20 LRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDL   86 (371)
T ss_dssp             HHHHTSHHHHGGGGSBTTTTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTT
T ss_pred             HHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf             9981997671435772378563317998466300999999999999999744338899999998714


No 20 
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.76A {Archaeoglobus fulgidus dsm 4304} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=68.62  E-value=5  Score=18.25  Aligned_cols=82  Identities=18%  Similarity=0.123  Sum_probs=41.6

Q ss_pred             CHHHHHHHHHHHHH---HHCCCCCH---HHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             25688899999999---71036889---9999999976775145128899985188899999970144457836899999
Q T0615            32 PYVNHVINVSTILS---VEACITDE---GVLMAALLHDVVEDTDASFEDVEKLFGPDVCGLVREVTDDKSLEKQERKRLQ  105 (179)
Q Consensus        32 PY~~H~~~Va~il~---~~~~~~D~---~~i~AalLHDvvEDt~~t~~~l~~~FG~~Va~lV~~lT~~~~~~~~~~~~~~  105 (179)
                      .=-.|...||.+..   ........   .++.-||+||+.|--..+..-               .++... ...+.....
T Consensus        38 sVAeHs~~va~ia~~la~~~~~~~~d~~k~~~maL~HDl~E~~~GDi~~---------------~~k~~~-~~~e~~~~e  101 (173)
T 1ynb_A           38 SVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEARTMDLHK---------------IARRYV-SCDEEGARE  101 (173)
T ss_dssp             BHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTHHHHCCCCT---------------TGGGTC-CCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCH---------------HHHHHC-CCCHHHHHH
T ss_conf             7899999999999999867088510099999999999999987179746---------------677501-366688888


Q ss_pred             HHH-----HHHCCHHHHHHHHHHHHHHHH
Q ss_conf             999-----875688998989998986888
Q T0615           106 IEN-----AAKSSCRAKLIKLADKLDNLR  129 (179)
Q Consensus       106 ~~~-----~~~~d~~v~lIKLADrl~Nlr  129 (179)
                      ...     ....++.+.+||-+|++..+-
T Consensus       102 ~~~~w~Eye~~~s~Ea~~vk~~Dkle~~l  130 (173)
T 1ynb_A          102 EQLSWMESKPDFSDVEVYVSDADKLELAF  130 (173)
T ss_dssp             HHTTTCSSCCCCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99989987414348999999987999999


No 21 
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=66.75  E-value=5.5  Score=18.02  Aligned_cols=102  Identities=25%  Similarity=0.331  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHH---HHHCCCCC-HHHHHHHHHHHHHHH-------------------CCCHHHHHH-HHCCHHHHHHH
Q ss_conf             2568889999999---97103688-999999999767751-------------------451288999-85188899999
Q T0615            32 PYVNHVINVSTIL---SVEACITD-EGVLMAALLHDVVED-------------------TDASFEDVE-KLFGPDVCGLV   87 (179)
Q Consensus        32 PY~~H~~~Va~il---~~~~~~~D-~~~i~AalLHDvvED-------------------t~~t~~~l~-~~FG~~Va~lV   87 (179)
                      .|+.|.+.+|.+.   +......| +++..||+|||+=+=                   ...+..+.+ +.||..=..+=
T Consensus       118 ~~w~~S~~~A~~a~~lA~~~~~~~~~~a~~aGLLhdiG~l~l~~~~~~~~~~i~~~~~~~~~~~~~~E~~~~G~~h~~ig  197 (305)
T 3hc1_A          118 TLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITFGQAEERLFGTSHCEVG  197 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHHCCCHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHH
T ss_conf             88999999999999999980368999999999998469999977666989999999865799989999999688999999


Q ss_pred             HHHCCCCCCCHHHHHHHHHH----HH-HHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97014445783689999999----98-756889989899989868888873
Q T0615            88 REVTDDKSLEKQERKRLQIE----NA-AKSSCRAKLIKLADKLDNLRDLQV  133 (179)
Q Consensus        88 ~~lT~~~~~~~~~~~~~~~~----~~-~~~d~~v~lIKLADrl~Nlr~l~~  133 (179)
                      ..+-+.=++|..-...-..-    .. .....-+.+|.+||.+.+.+.+..
T Consensus       198 ~~l~~~W~lP~~i~~ai~~hh~p~~~~~~~~~l~~~v~lA~~l~~~~~~g~  248 (305)
T 3hc1_A          198 FALAKRWSLNEFICDTILYHHDIEAVPYKQAAIVAMVAFADEYCTLRRLGF  248 (305)
T ss_dssp             HHHHHHTTCCHHHHHHHHHTTCGGGCSSSCCHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999998699999999999865924277550359799999999999708887


No 22 
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative; dntpase, DNTP, single-stranded DNA, DNA, dGTPase, HD superfamily; 2.20A {Thermus thermophilus HB8}
Probab=63.85  E-value=5  Score=18.26  Aligned_cols=120  Identities=13%  Similarity=0.114  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCC---HHHHHHHHHHHHHHHC--CCCCH-HHHHHHHHHHHHHHCC---CHHHHHHH
Q ss_conf             89999999999970267657888872---5688899999999710--36889-9999999976775145---12889998
Q T0615             7 AKFMECLQYAAFKHRQQRRKDPQETP---YVNHVINVSTILSVEA--CITDE-GVLMAALLHDVVEDTD---ASFEDVEK   77 (179)
Q Consensus         7 ~~~~~A~~~A~~~H~gq~rk~g~~~P---Y~~H~~~Va~il~~~~--~~~D~-~~i~AalLHDvvEDt~---~t~~~l~~   77 (179)
                      .|+...-.|=.-.+.-|.-..+.+-=   =.+|.++||.|-...+  .+.+. -+-+|||.||+ -..|   .-+.-|.+
T Consensus        47 dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLTHSlEVaqi~Rsi~~~l~~~~~lvea~~LaHDi-GhpPFGH~GE~al~~  125 (376)
T 2dqb_A           47 DRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDL-GHPPFGHTGEHVLNA  125 (376)
T ss_dssp             HHHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTT-TCCSSTTHHHHHHHH
T ss_pred             HHHHCCHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHH
T ss_conf             3886489886046788784369998536667899999999999999985202047888874222-789852139999899


Q ss_pred             HCC--------HHHHHHHHHHCC-C---CCCCHHHHHHHHH-------------HHHHHCCHHHHHHHHHHHHHH
Q ss_conf             518--------889999997014-4---4578368999999-------------998756889989899989868
Q T0615            78 LFG--------PDVCGLVREVTD-D---KSLEKQERKRLQI-------------ENAAKSSCRAKLIKLADKLDN  127 (179)
Q Consensus        78 ~FG--------~~Va~lV~~lT~-~---~~~~~~~~~~~~~-------------~~~~~~d~~v~lIKLADrl~N  127 (179)
                      .|-        ..-.++|..+-+ .   .+++-......-+             ..-......+.++.+||-++-
T Consensus       126 ~~~~~ggFegNaQslRilt~Le~~~~~~~GlnLT~~tl~~i~Ky~~~~~~~~~~~~~~~~~lEaqIme~ADDIAY  200 (376)
T 2dqb_A          126 LMQDHGGFEHNAQALRILTHLEVRYPGFRGLNLTYEVLEGIATHEAAYSPGFKPLYEGQGTLEAQVVDLSDAIAY  200 (376)
T ss_dssp             HTTTTTCCCHHHHHHHHHHTTCBCBTTBSBCCCCHHHHHHHHHSCC-----------CCSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf             876259900207899999755216777798402354454432033222620456764268778998532542873


No 23 
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohydrolase; deoxyguanosinetriphosphate triphsphohydrolase; 2.35A {Pseudomonas syringae PV}
Probab=59.29  E-value=3.8  Score=19.04  Aligned_cols=58  Identities=16%  Similarity=0.143  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCC---HHHHHHHHHHHHHHHCCCC--C---------------HHHHHHHHHHHH
Q ss_conf             89999999999970267657888872---5688899999999710368--8---------------999999999767
Q T0615             7 AKFMECLQYAAFKHRQQRRKDPQETP---YVNHVINVSTILSVEACIT--D---------------EGVLMAALLHDV   64 (179)
Q Consensus         7 ~~~~~A~~~A~~~H~gq~rk~g~~~P---Y~~H~~~Va~il~~~~~~~--D---------------~~~i~AalLHDv   64 (179)
                      .|+..--.|-.-.+.-|.-..+++-=   =++|.++||.|-...+...  +               .-+-++||.||+
T Consensus        34 dRIi~S~aFRRLq~KTQVf~~~~~D~~rtRLTHSlEVaqi~Rsi~~~l~~~l~~~~~~~~~~~~~~~lvea~~LaHDi  111 (451)
T 2pgs_A           34 DRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLTHSLEVSCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQSACLAHDI  111 (451)
T ss_dssp             HHHHHSHHHHGGGGCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHHHHHTTT
T ss_pred             CHHHCCHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             187658977614468725507999878170679999999999999999988876270003542078899999986327


No 24 
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=55.90  E-value=8.5  Score=16.81  Aligned_cols=55  Identities=18%  Similarity=0.158  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999999999702676578888725688899999999710368899999999976775
Q T0615             9 FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVE   66 (179)
Q Consensus         9 ~~~A~~~A~~~H~gq~rk~g~~~PY~~H~~~Va~il~~~~~~~D~~~i~AalLHDvvE   66 (179)
                      +.+|+++--. --+.-.++ .+.|=+.|++.+|..+...+...| -...+||+||.=.
T Consensus        77 I~eal~~Ln~-lvD~SDPD-~dlpn~~Ha~QTAE~iR~~~p~~d-W~qL~GLiHDLGK  131 (289)
T 2huo_A           77 IMEAVGMLDD-LVDESDPD-VDFPNSFHAFQTAEGIRKAHPDKD-WFHLVGLLHDLGK  131 (289)
T ss_dssp             HHHHHHHGGG-CCCSSCTT-CCSCHHHHHHHHHHHHHHHCTTCH-HHHHHHHHTTGGG
T ss_pred             HHHHHHHHHH-HCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHH
T ss_conf             9999999986-24876666-645589999999999997489900-6786658855435


No 25 
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=55.47  E-value=8.7  Score=16.76  Aligned_cols=55  Identities=18%  Similarity=0.154  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             9999999999970267657888872568889999999971036889999999997677
Q T0615             8 KFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVV   65 (179)
Q Consensus         8 ~~~~A~~~A~~~H~gq~rk~g~~~PY~~H~~~Va~il~~~~~~~D~~~i~AalLHDvv   65 (179)
                      .+.+|++.--. --+.-.++ .+.|=+.|++.+|..+...+...| -...+||+||.=
T Consensus        37 tI~eal~~Ln~-lvD~SDPD-~~lpn~~H~~QTAE~iR~~~p~~d-W~qL~GLiHDLG   91 (250)
T 2ibn_A           37 TVMEAVDLLDG-LVDESDPD-VDFPNSFHAFQTAEGIRKAHPDKD-WFHLVGLLHDLG   91 (250)
T ss_dssp             CHHHHHHHGGG-CCCTTC----CCCHHHHHHHHHHHHHHHSTTCH-HHHHHHHHTTGG
T ss_pred             EHHHHHHHHHH-HCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHH
T ss_conf             49999999986-24877666-645689999999999997389901-788776886777


No 26 
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis MED217}
Probab=51.34  E-value=6.1  Score=17.73  Aligned_cols=58  Identities=17%  Similarity=0.194  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCC---HHHHHHHHHHHHHHHCCCC----------------------CHHHHHHHHH
Q ss_conf             89999999999970267657888872---5688899999999710368----------------------8999999999
Q T0615             7 AKFMECLQYAAFKHRQQRRKDPQETP---YVNHVINVSTILSVEACIT----------------------DEGVLMAALL   61 (179)
Q Consensus         7 ~~~~~A~~~A~~~H~gq~rk~g~~~P---Y~~H~~~Va~il~~~~~~~----------------------D~~~i~AalL   61 (179)
                      .|+..--.|=.-.+.-|.-..+++-=   =++|.++||.|-...+...                      ..-+-+|||.
T Consensus        36 dRIi~S~aFRRLq~KTQVf~~~~~D~~RtRLTHSLEVAqIaRsi~~~l~~~l~~~~~~~~~~~~~~~~~~~~Lveaa~La  115 (444)
T 3bg2_A           36 DRIIFSAPFRSLQDKTQVIPLSKTDFVHTRLTHSLEVSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALA  115 (444)
T ss_dssp             HHHHHSHHHHHGGGCBCSCC---CCCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             28876897760656771550799987717216999999999999999998887735103320232346367899999987


Q ss_pred             HHH
Q ss_conf             767
Q T0615            62 HDV   64 (179)
Q Consensus        62 HDv   64 (179)
                      ||+
T Consensus       116 HDi  118 (444)
T 3bg2_A          116 HDI  118 (444)
T ss_dssp             TTT
T ss_pred             HCC
T ss_conf             315


No 27 
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3hc8_A* 3hdz_A* 1t9r_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* 3jwq_A* 3jwr_A*
Probab=50.23  E-value=10  Score=16.24  Aligned_cols=51  Identities=24%  Similarity=0.392  Sum_probs=28.8

Q ss_pred             CCCH--HHHHHHHHHHH----HHHCC---CCC---HHHHHHHHHHHHHHHCCCH-------HHHHHHHCCH
Q ss_conf             8725--68889999999----97103---688---9999999997677514512-------8899985188
Q T0615            30 ETPY--VNHVINVSTIL----SVEAC---ITD---EGVLMAALLHDVVEDTDAS-------FEDVEKLFGP   81 (179)
Q Consensus        30 ~~PY--~~H~~~Va~il----~~~~~---~~D---~~~i~AalLHDvvEDt~~t-------~~~l~~~FG~   81 (179)
                      +.||  +.|...|+..+    ...+.   -.+   -..++||+.||+-=. +++       ...+...||+
T Consensus        97 ~vpYHN~~HA~dV~q~~~~lL~~~~~~~~l~~~e~~alliAal~HDv~Hp-G~nN~fli~~~s~La~lYnd  166 (347)
T 1tbf_A           97 NVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHP-GVSNQFLINTNSELALMYND  166 (347)
T ss_dssp             TSSSSSHHHHHHHHHHHHHHHHTTCCGGGSCHHHHHHHHHHHHHTTTTCC-SSCHHHHHHTTCHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCC-CCCHHHHHHCCCHHHHHHCC
T ss_conf             99872699999999999999975786656999999999999885056999-98788999739878998299


No 28 
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 2o8h_A* 2ovv_A* 2ovy_A*
Probab=42.60  E-value=13  Score=15.66  Aligned_cols=62  Identities=21%  Similarity=0.350  Sum_probs=34.4

Q ss_pred             CCCCCCCCHH--HHHHHHHHHHH----HHCCCC-C---HHHHHHHHHHHHHHHCCC------HHHHHHHHCCHHHHHH
Q ss_conf             5788887256--88899999999----710368-8---999999999767751451------2889998518889999
Q T0615            25 RKDPQETPYV--NHVINVSTILS----VEACIT-D---EGVLMAALLHDVVEDTDA------SFEDVEKLFGPDVCGL   86 (179)
Q Consensus        25 rk~g~~~PY~--~H~~~Va~il~----~~~~~~-D---~~~i~AalLHDvvEDt~~------t~~~l~~~FG~~Va~l   86 (179)
                      ++++.+.||-  .|.+.|+.-+-    ..+... +   ...++||+.||+-=.+-.      +...+...|++.|.+-
T Consensus        71 ~~~Y~~~pYHN~~HA~dV~q~~~~~L~~~~~~l~~~E~~alliAal~HDv~H~G~~N~f~~~~~s~La~lyn~SvLE~  148 (331)
T 2our_A           71 KKNYRRVPYHNWKHAVTVAHCMYAILQNNHTLFTDLERKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQ  148 (331)
T ss_dssp             HHTSCSCSSSSHHHHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHTTTTCCSCCHHHHHHTTCHHHHHSCSSHHHH
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHCCCCHHHH
T ss_conf             971799998078999999999999982787569989999999999971269999998888871883898739966889


No 29 
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major}
Probab=41.19  E-value=14  Score=15.36  Aligned_cols=42  Identities=29%  Similarity=0.501  Sum_probs=24.4

Q ss_pred             CCCCCCCCHH--HHHHHHHHHHH----HHCC--CC-C---HHHHHHHHHHHHHH
Q ss_conf             5788887256--88899999999----7103--68-8---99999999976775
Q T0615            25 RKDPQETPYV--NHVINVSTILS----VEAC--IT-D---EGVLMAALLHDVVE   66 (179)
Q Consensus        25 rk~g~~~PY~--~H~~~Va~il~----~~~~--~~-D---~~~i~AalLHDvvE   66 (179)
                      ++++.+.||-  .|...|+..+-    ..+.  .. +   ...++||+.||+-=
T Consensus        91 ~~~Y~~nPYHN~~HA~dV~q~~~~lL~~~~~~~~l~~~E~~alliAal~HDv~H  144 (359)
T 2r8q_A           91 RRRYRRVPYHNFYHVVDVCQTLHTYLYTGKASELLTELECYVLLVTALVHDLDH  144 (359)
T ss_dssp             HHTCCSCSSSSHHHHHHHHHHHHHHHHTSCGGGGSCHHHHHHHHHHHHHTTTTC
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             974899998178999999999999997366201199899999999999736799


No 30 
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, structural genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=37.94  E-value=14  Score=15.49  Aligned_cols=98  Identities=11%  Similarity=0.037  Sum_probs=44.7

Q ss_pred             CHHHHHHHHHHHHHHHCC---------CCC-HHHHHHHHHHHHHH--------H--CCCH-HHHHHHHCCHHHHHHHHHH
Q ss_conf             256888999999997103---------688-99999999976775--------1--4512-8899985188899999970
Q T0615            32 PYVNHVINVSTILSVEAC---------ITD-EGVLMAALLHDVVE--------D--TDAS-FEDVEKLFGPDVCGLVREV   90 (179)
Q Consensus        32 PY~~H~~~Va~il~~~~~---------~~D-~~~i~AalLHDvvE--------D--t~~t-~~~l~~~FG~~Va~lV~~l   90 (179)
                      .++.|.+.+|........         ..| ++...||+|||+=.        +  ...+ .+...+.||..-..+=..+
T Consensus       117 ~~w~~s~~~A~~a~~la~~~~~~~~~~~~~~~~a~~aGLLhdiG~l~l~~~~~~~~~~~~~~~~e~~~~g~~h~~ig~~l  196 (281)
T 3i7a_A          117 EVWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGALPVLTEAEAHPEMFTTIEHLRSLVRKMQGPIGRAV  196 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHTTTTHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHH
T ss_conf             99999999999999999996234753313699999855153014899988858767644679999998652278999999


Q ss_pred             CCCCCCCHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHH
Q ss_conf             144457836899999999----875688998989998986888
Q T0615            91 TDDKSLEKQERKRLQIEN----AAKSSCRAKLIKLADKLDNLR  129 (179)
Q Consensus        91 T~~~~~~~~~~~~~~~~~----~~~~d~~v~lIKLADrl~Nlr  129 (179)
                      -+.=++|..-...-..-+    .......+.+|.+|+.+.+..
T Consensus       197 ~~~W~lp~~i~~~i~~hh~~~~~~~~~~~~~iv~lA~~~~~~~  239 (281)
T 3i7a_A          197 LKSWDFAPEVMEVVERWADLPYLGDHVSYLDFIRAAAFYTGEL  239 (281)
T ss_dssp             HHHTTCCHHHHHHHHHTTCTTCCCSSCCHHHHHHHHHHHHTSS
T ss_pred             HHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             9875999999999998708554775312999999999998653


No 31 
>1vqr_A Hypothetical protein CJ0248; 6967725, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=36.20  E-value=17  Score=14.87  Aligned_cols=33  Identities=12%  Similarity=0.069  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHH
Q ss_conf             56888999999997103688----9999999997677
Q T0615            33 YVNHVINVSTILSVEACITD----EGVLMAALLHDVV   65 (179)
Q Consensus        33 Y~~H~~~Va~il~~~~~~~D----~~~i~AalLHDvv   65 (179)
                      |+.|...+|.+++......+    .++..||+|||+=
T Consensus       125 ~w~~s~~~a~~~~~~~~~~~~~~~~~a~~aGLLhdiG  161 (297)
T 1vqr_A          125 FLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLG  161 (297)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf             9999789999999998762542689999867775302


No 32 
>3m1t_A Putative phosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE GOL; 1.62A {Shewanella amazonensis}
Probab=35.29  E-value=18  Score=14.78  Aligned_cols=100  Identities=19%  Similarity=0.201  Sum_probs=48.6

Q ss_pred             CCHHHHHHHHHHHH---HHHCCCCCHHHHHHHHHHHHHHH------------------CCCHHHHHH-HHCCHHHHHHHH
Q ss_conf             72568889999999---97103688999999999767751------------------451288999-851888999999
Q T0615            31 TPYVNHVINVSTIL---SVEACITDEGVLMAALLHDVVED------------------TDASFEDVE-KLFGPDVCGLVR   88 (179)
Q Consensus        31 ~PY~~H~~~Va~il---~~~~~~~D~~~i~AalLHDvvED------------------t~~t~~~l~-~~FG~~Va~lV~   88 (179)
                      ..++.|.+.||.+.   +.......+++..+|+|||+=+=                  .+.+..+++ +.||..-..+-.
T Consensus       104 ~~~w~~s~~~A~~a~~la~~~~~~~~~a~~aGLLhdiG~l~l~~~~~~~~~~~~~~~~~~~~~~~~E~~~~g~~h~~ig~  183 (275)
T 3m1t_A          104 ADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIGELLIVNGDPAVAATISAAVADGADRNLMEKELLGYDNAEIGA  183 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHHHTTCCHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHH
T ss_conf             99999999999999999886024789999988998999999987757889999998727998899999997878999999


Q ss_pred             HHCCCCCCCHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             70144457836899999999----8756889989899989868888
Q T0615            89 EVTDDKSLEKQERKRLQIEN----AAKSSCRAKLIKLADKLDNLRD  130 (179)
Q Consensus        89 ~lT~~~~~~~~~~~~~~~~~----~~~~d~~v~lIKLADrl~Nlr~  130 (179)
                      .+.+.=++|..-...-..-+    ....+.-+.+|.+||.+.+...
T Consensus       184 ~l~~~W~lP~~i~~~i~~hh~p~~~~~~~~l~~~v~lA~~i~~~~~  229 (275)
T 3m1t_A          184 LLAQSWKFTPHLVKGIQFQNHPKSAEPYSKLAGMLAMAKQIAADWD  229 (275)
T ss_dssp             HHHHHTTCCHHHHHHHHTTTCGGGCSSCCHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             9999839979999999986594558888779999999999997378


No 33 
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphodiesterase 9A; crystallography, phophodiestrase, enzyme mechanism, alternative splicing, hydrolase; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A*
Probab=33.23  E-value=16  Score=15.14  Aligned_cols=39  Identities=18%  Similarity=0.318  Sum_probs=22.7

Q ss_pred             CCCCCHH--HHHHHHHHHH----HHHCC---CCC---HHHHHHHHHHHHHH
Q ss_conf             8887256--8889999999----97103---688---99999999976775
Q T0615            28 PQETPYV--NHVINVSTIL----SVEAC---ITD---EGVLMAALLHDVVE   66 (179)
Q Consensus        28 g~~~PY~--~H~~~Va~il----~~~~~---~~D---~~~i~AalLHDvvE   66 (179)
                      +.+.||-  .|.+.|+..+    ...+.   -.+   -..++||+.||+-=
T Consensus        69 Y~~npYHN~~HA~dV~q~~~~ll~~~~~~~~l~~~e~~alliAAl~HDv~H  119 (329)
T 3dyn_A           69 YRNNPFHNFRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDH  119 (329)
T ss_dssp             SCCCSSSSHHHHHHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHHTTTTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             799998179999999999999998527333389899999999999844799


No 34 
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A
Probab=32.87  E-value=16  Score=15.12  Aligned_cols=54  Identities=17%  Similarity=0.271  Sum_probs=29.9

Q ss_pred             CCCCCCCHH--HHHHHHHHHH----HHHCC--CCC----HHHHHHHHHHHHHHHCCCH-------HHHHHHHCC
Q ss_conf             788887256--8889999999----97103--688----9999999997677514512-------889998518
Q T0615            26 KDPQETPYV--NHVINVSTIL----SVEAC--ITD----EGVLMAALLHDVVEDTDAS-------FEDVEKLFG   80 (179)
Q Consensus        26 k~g~~~PY~--~H~~~Va~il----~~~~~--~~D----~~~i~AalLHDvvEDt~~t-------~~~l~~~FG   80 (179)
                      +++.+.||-  .|.+.|+..+    ...+.  ..+    -..++||+.||+-=.+ ++       ...+...||
T Consensus        74 ~~Y~~~pYHN~~HA~dV~q~~~~ll~~~~~~~~l~~~e~~alliAal~HDv~HpG-~~N~fl~~~~s~LA~~Y~  146 (345)
T 3itu_A           74 KGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRG-TNNSFQVASKSVLAALYS  146 (345)
T ss_dssp             HTCCCCSSSSHHHHHHHHHHHHHHHHHHCGGGTSCHHHHHHHHHHHHHTTTTCCS-CCHHHHHHTTCHHHHHHT
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-CCHHHHHHCCCHHHHHHC
T ss_conf             6279998736999999999999999636854337889999999999971468998-768999864877888846


No 35 
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus}
Probab=32.09  E-value=20  Score=14.45  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=23.4

Q ss_pred             CHHHHHHHHHHHHHHHC---CCCC-HHHHHHHHHHHHH
Q ss_conf             25688899999999710---3688-9999999997677
Q T0615            32 PYVNHVINVSTILSVEA---CITD-EGVLMAALLHDVV   65 (179)
Q Consensus        32 PY~~H~~~Va~il~~~~---~~~D-~~~i~AalLHDvv   65 (179)
                      -|+.|.+.||.+.....   ...| +++..+|+|||+=
T Consensus       108 ~~w~hs~~~A~~a~~lA~~~~~~~~e~a~~~gLLhdiG  145 (288)
T 3ljx_A          108 AYWQKSLARAVALQSITAQASTVAPKEAFTLGLLADVG  145 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999999999983998888998888884413


No 36 
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 2k31_A*
Probab=29.25  E-value=22  Score=14.15  Aligned_cols=56  Identities=21%  Similarity=0.259  Sum_probs=30.2

Q ss_pred             CCCH--HHHHHHHHHHHHHHCCC------C-C---HHHHHHHHHHHHHHHCC------CHHHHHHHHCCHHHHH
Q ss_conf             8725--68889999999971036------8-8---99999999976775145------1288999851888999
Q T0615            30 ETPY--VNHVINVSTILSVEACI------T-D---EGVLMAALLHDVVEDTD------ASFEDVEKLFGPDVCG   85 (179)
Q Consensus        30 ~~PY--~~H~~~Va~il~~~~~~------~-D---~~~i~AalLHDvvEDt~------~t~~~l~~~FG~~Va~   85 (179)
                      +.||  +.|.+.|+..+-..-..      . +   -..++||+.||+-=.+-      -+...+...|+..|.+
T Consensus       612 ~~pyHN~~Ha~dv~q~~~~~l~~~~~~~~~~~~e~~all~aal~HD~~H~G~~N~f~~~~~~~la~~y~~svlE  685 (878)
T 3bjc_A          612 NVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCHSIME  685 (878)
T ss_dssp             TSSSSSHHHHHHHHHHHHHHHHTTCCGGGSCHHHHHHHHHHHHHTTTTCCCTTCCTGGGSSCTTHHHHCTTHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHCCCCHHH
T ss_conf             99872699999999999999852370213999999999999983257999988789985388889881980678


No 37 
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation, alternative splicing, hydrolase, membrane, polymorphism; 3.02A {Homo sapiens}
Probab=27.88  E-value=21  Score=14.39  Aligned_cols=42  Identities=19%  Similarity=0.321  Sum_probs=24.4

Q ss_pred             CCCCCCCHH--HHHHHHHHHHHHH----CC--CCC----HHHHHHHHHHHHHHH
Q ss_conf             788887256--8889999999971----03--688----999999999767751
Q T0615            26 KDPQETPYV--NHVINVSTILSVE----AC--ITD----EGVLMAALLHDVVED   67 (179)
Q Consensus        26 k~g~~~PY~--~H~~~Va~il~~~----~~--~~D----~~~i~AalLHDvvED   67 (179)
                      +++.+.||-  .|...|+..+...    +.  ..+    ...++||+.||+-=.
T Consensus       435 ~~y~~~pyHN~~Ha~dv~q~~~~~l~~~~~~~~~~~~e~~a~~~aal~HD~~H~  488 (691)
T 3ibj_A          435 KGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHR  488 (691)
T ss_dssp             HTSBCCSSSBHHHHHHHHHHHHHHHHHHTGGGTSCHHHHHHHHHHHHHTTTTCC
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             556899883789999999999999971687432687999999999972677999


No 38 
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta sandwich, duplication of A half-domain; 2.01A {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Probab=23.77  E-value=3.3  Score=19.43  Aligned_cols=49  Identities=12%  Similarity=0.226  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH----HHHHHHHHCCCHHHH-HHHHCCH
Q ss_conf             8872568889999999971036889999999----997677514512889-9985188
Q T0615            29 QETPYVNHVINVSTILSVEACITDEGVLMAA----LLHDVVEDTDASFED-VEKLFGP   81 (179)
Q Consensus        29 ~~~PY~~H~~~Va~il~~~~~~~D~~~i~Aa----lLHDvvEDt~~t~~~-l~~~FG~   81 (179)
                      ++.||+.|.+.   .++.+++ .|-.+-+-+    =-|-++||+..++.+ +.+.+|+
T Consensus        58 TGi~FlDHML~---~~a~Hg~-~dL~v~a~GDl~vD~HHtvEDvgI~LG~al~~ALGd  111 (221)
T 2ae8_A           58 TGVGFLNHMLT---LFTFHSG-LSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKD  111 (221)
T ss_dssp             CSCHHHHHHHH---HHHHHHC-CEEEEEEECC----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHH---HHHHHCC-CCEEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHH
T ss_conf             69856999999---9999779-988999863577676504236666799999988774


No 39 
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, X-RAY crystallography, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Probab=22.90  E-value=3.3  Score=19.37  Aligned_cols=49  Identities=20%  Similarity=0.285  Sum_probs=29.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH----HHHHHHHCCCHHHHH-HHHCCH
Q ss_conf             88725688899999999710368899999999----976775145128899-985188
Q T0615            29 QETPYVNHVINVSTILSVEACITDEGVLMAAL----LHDVVEDTDASFEDV-EKLFGP   81 (179)
Q Consensus        29 ~~~PY~~H~~~Va~il~~~~~~~D~~~i~Aal----LHDvvEDt~~t~~~l-~~~FG~   81 (179)
                      ++.||+.|.+.   .++.+++ .|-.+.+-+=    -|-++||+...+.+- .+..|+
T Consensus        40 Tgi~FlDHML~---~~a~H~~-~dl~v~a~GDl~vD~HHtvEDvgI~LG~al~~aLgd   93 (207)
T 2f1d_A           40 SGIPFLDHMLD---QLASHGL-FDVHVRATGDVHIDDHHTNEDIALAIGTALLKALGE   93 (207)
T ss_dssp             CSCHHHHHHHH---HHHHHHT-CEEEEEEECCTTTCSHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHH---HHHHHCC-CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             79826999999---9999768-988999976788788760888899999999998557


No 40 
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Probab=21.79  E-value=31  Score=13.28  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=13.6

Q ss_pred             CCCCCCCHH--HHHHHHHHHHH
Q ss_conf             788887256--88899999999
Q T0615            26 KDPQETPYV--NHVINVSTILS   45 (179)
Q Consensus        26 k~g~~~PY~--~H~~~Va~il~   45 (179)
                      +++.+.||-  .|...|+..+-
T Consensus        76 ~~Y~~nPYHN~~HA~dV~q~~~   97 (420)
T 1so2_A           76 NGYRDIPYHNRIHATDVLHAVW   97 (420)
T ss_dssp             TTSCSCSSSSHHHHHHHHHHHH
T ss_pred             HHCCCCCCCCHHHHHHHHHHHH
T ss_conf             8579999827899999999999


No 41 
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2
Probab=20.30  E-value=33  Score=13.09  Aligned_cols=50  Identities=16%  Similarity=0.343  Sum_probs=27.5

Q ss_pred             CCH--HHHHHHHHHHH----HHHCCC--C-C---HHHHHHHHHHHHHHHCCCHH-------HHHHHHCCH
Q ss_conf             725--68889999999----971036--8-8---99999999976775145128-------899985188
Q T0615            31 TPY--VNHVINVSTIL----SVEACI--T-D---EGVLMAALLHDVVEDTDASF-------EDVEKLFGP   81 (179)
Q Consensus        31 ~PY--~~H~~~Va~il----~~~~~~--~-D---~~~i~AalLHDvvEDt~~t~-------~~l~~~FG~   81 (179)
                      .||  +.|...|+..+    ...+..  . +   ...++||+.||+-=. ++|-       ..+...||+
T Consensus        79 nPYHN~~HA~dV~q~~~~lL~~~~~~~~l~~~E~~alliAAl~HD~~Hp-G~~N~fli~~~~~LA~lYnd  147 (365)
T 1taz_A           79 NPYHNQIHAADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHT-GTTNSFHIQTKSECAIVYND  147 (365)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHHHHSGGGGSCHHHHHHHHHHHHHTTTTCC-SSCHHHHHHHTCHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCHHHHHHCCCHHHHHCCC
T ss_conf             8754599999999999999970461122899999999999998715889-96577898558768886499


Done!