Query T0616 Ryanodine receptor, Bacteroides thetaiotaomicron, 103 residues
Match_columns 103
No_of_seqs 103 out of 138
Neff 5.2
Searched_HMMs 22458
Date Mon Jul 5 08:57:20 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0616.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0616.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v65_A Riken cDNA 2610044O15; 84.4 0.18 8E-06 28.7 0.4 40 64-103 16-55 (64)
2 2cto_A Novel protein; high mob 54.8 4.9 0.00022 20.5 2.0 52 37-88 16-68 (93)
3 1wz6_A HMG-box transcription f 25.2 38 0.0017 15.4 2.7 21 69-89 45-65 (82)
4 1y0n_A Hypothetical UPF0270 pr 21.3 25 0.0011 16.5 1.1 12 65-76 2-13 (78)
5 1wgf_A Upstream binding factor 20.9 47 0.0021 14.9 2.5 20 69-88 58-77 (90)
6 2e6o_A HMG box-containing prot 20.8 48 0.0021 14.8 2.5 20 69-88 55-74 (87)
7 2lef_A LEF-1 HMG, protein (lym 19.7 50 0.0022 14.7 2.7 22 68-89 39-60 (86)
8 3fgh_A Transcription factor A, 17.7 56 0.0025 14.4 2.5 21 69-89 36-56 (67)
9 2cs1_A PMS1 protein homolog 1; 17.7 51 0.0023 14.7 2.0 23 68-90 44-66 (92)
10 2eqz_A High mobility group pro 16.2 61 0.0027 14.2 3.7 27 70-96 56-86 (86)
No 1
>1v65_A Riken cDNA 2610044O15; transcriptional repressor, heterochromatin, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.212.1.1
Probab=84.43 E-value=0.18 Score=28.69 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=34.0
Q ss_pred CCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9841232118988998778999999999988394114689
Q T0616 64 HPCLVPYDELPEEEKEYDRNTAMNTIKMVKKLGFRIEKED 103 (103)
Q Consensus 64 HP~Lvpy~~L~e~eK~~dr~~~~e~lk~l~~~Gy~I~~~d 103 (103)
.=.--.|..|+...|+-||+++.|..+.|..+||.+..++
T Consensus 16 ~Fs~EEW~~Ld~~Qk~LyrdVm~Eny~~l~slg~~~~~~~ 55 (64)
T 1v65_A 16 NFTEEEWDLLDSSQKRLYEEVMLETYQNLTDIGYNWQDHH 55 (64)
T ss_dssp CCCHHHHHTSCHHHHHHHHHHHHHTTTSCCCSCCCCCCCC
T ss_pred ECCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7499999474999999999869998533531126767898
No 2
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.83 E-value=4.9 Score=20.50 Aligned_cols=52 Identities=23% Similarity=0.166 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCHHCCCHHHHHHHHHHHHHH
Q ss_conf 888999999998200027743766-6889841232118988998778999999
Q T0616 37 NVHEVWAKARIDEGWTYGEKRDDI-HKKHPCLVPYDELPEEEKEYDRNTAMNT 88 (103)
Q Consensus 37 n~H~~Wa~~k~~~GW~yG~~~d~~-~k~HP~Lvpy~~L~e~eK~~dr~~~~e~ 88 (103)
|.---+..+++-+.-+.|-.-... ...--|--.|..|+++||++|-+++++-
T Consensus 16 nAyyfFv~d~iPeLrrRGLpVarvadaiP~cs~dWalL~eeEke~YAEkAr~W 68 (93)
T 2cto_A 16 NAYYFFVQEKIPELRRRGLPVARVADAIPYCSSDWALLREEEKEKYAEMAREW 68 (93)
T ss_dssp CHHHHHHHTTHHHHHHHTCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30004278566798974885355652243046788885089999999999998
No 3
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=25.18 E-value=38 Score=15.38 Aligned_cols=21 Identities=19% Similarity=0.063 Sum_probs=17.9
Q ss_pred CHHCCCHHHHHHHHHHHHHHH
Q ss_conf 321189889987789999999
Q T0616 69 PYDELPEEEKEYDRNTAMNTI 89 (103)
Q Consensus 69 py~~L~e~eK~~dr~~~~e~l 89 (103)
-|..||+.||..+.+.+.+.-
T Consensus 45 ~Wk~Ls~~eK~~y~~~A~~~k 65 (82)
T 1wz6_A 45 WWAVLDPKEKQKYTDMAKEYK 65 (82)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHH
T ss_conf 998489999999999999999
No 4
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein structure initiative, PSI; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.291.1.1
Probab=21.34 E-value=25 Score=16.49 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=8.1
Q ss_pred CCCCCHHCCCHH
Q ss_conf 841232118988
Q T0616 65 PCLVPYDELPEE 76 (103)
Q Consensus 65 P~Lvpy~~L~e~ 76 (103)
-|++||+.|++.
T Consensus 2 ~MiIP~~~L~~e 13 (78)
T 1y0n_A 2 HMLIPHDLLEAD 13 (78)
T ss_dssp CEECCGGGSCHH
T ss_pred CCCCCHHHCCHH
T ss_conf 605675769999
No 5
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=20.95 E-value=47 Score=14.87 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=17.2
Q ss_pred CHHCCCHHHHHHHHHHHHHH
Q ss_conf 32118988998778999999
Q T0616 69 PYDELPEEEKEYDRNTAMNT 88 (103)
Q Consensus 69 py~~L~e~eK~~dr~~~~e~ 88 (103)
-|..|++.+|+.|.+.+.+.
T Consensus 58 ~Wk~Ls~~eK~~y~~~A~~~ 77 (90)
T 1wgf_A 58 MWNDLSEKKKAKYKAREAAL 77 (90)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHH
T ss_conf 99969999999999999999
No 6
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=20.77 E-value=48 Score=14.85 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=17.0
Q ss_pred CHHCCCHHHHHHHHHHHHHH
Q ss_conf 32118988998778999999
Q T0616 69 PYDELPEEEKEYDRNTAMNT 88 (103)
Q Consensus 69 py~~L~e~eK~~dr~~~~e~ 88 (103)
-|..|++.||..+.+.+...
T Consensus 55 ~Wk~ls~~eK~~y~~~A~~~ 74 (87)
T 2e6o_A 55 RWKKMKNEERRMYTLEAKAL 74 (87)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHH
T ss_conf 98739999999999999999
No 7
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=19.71 E-value=50 Score=14.71 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=18.1
Q ss_pred CCHHCCCHHHHHHHHHHHHHHH
Q ss_conf 2321189889987789999999
Q T0616 68 VPYDELPEEEKEYDRNTAMNTI 89 (103)
Q Consensus 68 vpy~~L~e~eK~~dr~~~~e~l 89 (103)
.-|..||+.||..+.+.+.+.-
T Consensus 39 ~~Wk~ls~~eK~~y~~~A~~~k 60 (86)
T 2lef_A 39 RRWHALSREEQAKYYELARKER 60 (86)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9997199999999999999999
No 8
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=17.70 E-value=56 Score=14.45 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=17.1
Q ss_pred CHHCCCHHHHHHHHHHHHHHH
Q ss_conf 321189889987789999999
Q T0616 69 PYDELPEEEKEYDRNTAMNTI 89 (103)
Q Consensus 69 py~~L~e~eK~~dr~~~~e~l 89 (103)
-|..||+.||..+.+.+.+..
T Consensus 36 ~W~~ls~~eK~~y~~~a~~~k 56 (67)
T 3fgh_A 36 NWKNLSDSEKELYIQHAKEDE 56 (67)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHH
T ss_conf 880199999999999999999
No 9
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.65 E-value=51 Score=14.69 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=18.3
Q ss_pred CCHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 23211898899877899999999
Q T0616 68 VPYDELPEEEKEYDRNTAMNTIK 90 (103)
Q Consensus 68 vpy~~L~e~eK~~dr~~~~e~lk 90 (103)
.-|..||+.||+.+.+.+.....
T Consensus 44 ~~Wk~Ls~~eK~~y~~~a~~~k~ 66 (92)
T 2cs1_A 44 ELWKTLSEEEKLKYEEKATKDLE 66 (92)
T ss_dssp HHHHSSCHHHHHHHHHHHHTTTH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99870899999999999999999
No 10
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=16.25 E-value=61 Score=14.24 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHCCCHHHHHHHHHHHHHH----HHHHHHCC
Q ss_conf 2118988998778999999----99998839
Q T0616 70 YDELPEEEKEYDRNTAMNT----IKMVKKLG 96 (103)
Q Consensus 70 y~~L~e~eK~~dr~~~~e~----lk~l~~~G 96 (103)
|..|++.+|..+.+.+.+. -+-|..+|
T Consensus 56 Wk~ls~~eK~~y~~~a~~~k~~Y~~e~~~Yg 86 (86)
T 2eqz_A 56 WKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8369999999999999999999999988729
Done!