Query T0616 Ryanodine receptor, Bacteroides thetaiotaomicron, 103 residues
Match_columns 103
No_of_seqs 103 out of 138
Neff 5.2
Searched_HMMs 15564
Date Mon Jul 5 08:58:14 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0616.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0616.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v65a_ a.212.1.1 (A:) hypothe 85.7 0.1 6.5E-06 29.2 0.4 40 64-103 16-55 (64)
2 d1v65a_ a.212.1.1 (A:) hypothe 72.8 0.47 3E-05 25.4 0.4 38 66-103 18-55 (64)
3 d1wgfa_ a.21.1.1 (A:) Nucleola 21.8 31 0.002 15.0 2.5 20 69-88 58-77 (90)
4 d1y0na_ d.291.1.1 (A:) Hypothe 21.1 17 0.0011 16.5 1.1 12 65-76 2-13 (78)
5 d1y0na_ d.291.1.1 (A:) Hypothe 19.9 19 0.0012 16.2 1.1 11 66-76 3-13 (78)
6 d1v64a_ a.21.1.1 (A:) Nucleola 19.7 35 0.0022 14.7 2.4 21 69-89 51-71 (108)
7 d2lefa_ a.21.1.1 (A:) Lymphoid 19.2 36 0.0023 14.7 2.7 22 68-89 39-60 (86)
8 d1v63a_ a.21.1.1 (A:) Nucleola 17.4 39 0.0025 14.4 3.0 22 69-90 44-65 (101)
9 d1whza_ d.50.3.2 (A:) Hypothet 17.1 34 0.0022 14.8 1.8 15 86-100 8-22 (70)
10 d1mska_ d.173.1.1 (A:) Methion 12.1 55 0.0035 13.6 4.3 31 27-57 188-218 (327)
No 1
>d1v65a_ a.212.1.1 (A:) hypotheical protein 2610044O15Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=85.70 E-value=0.1 Score=29.22 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=34.0
Q ss_pred CCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9841232118988998778999999999988394114689
Q T0616 64 HPCLVPYDELPEEEKEYDRNTAMNTIKMVKKLGFRIEKED 103 (103)
Q Consensus 64 HP~Lvpy~~L~e~eK~~dr~~~~e~lk~l~~~Gy~I~~~d 103 (103)
.=.--.|..|+...|+-||+++.|..+.|..+||.+..++
T Consensus 16 ~Fs~EEW~~Ld~~Qk~LyrdVm~Eny~~l~slg~~~~~~~ 55 (64)
T d1v65a_ 16 NFTEEEWDLLDSSQKRLYEEVMLETYQNLTDIGYNWQDHH 55 (64)
T ss_dssp CCCHHHHHTSCHHHHHHHHHHHHHTTTSCCCSCCCCCCCC
T ss_pred ECCHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCC
T ss_conf 7499999570999999999848988422522025767997
No 2
>d1v65a_ a.212.1.1 (A:) hypotheical protein 2610044O15Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=72.83 E-value=0.47 Score=25.38 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=32.6
Q ss_pred CCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 41232118988998778999999999988394114689
Q T0616 66 CLVPYDELPEEEKEYDRNTAMNTIKMVKKLGFRIEKED 103 (103)
Q Consensus 66 ~Lvpy~~L~e~eK~~dr~~~~e~lk~l~~~Gy~I~~~d 103 (103)
..-.|..|+...|..||+++.|..+.|..+|+.+...+
T Consensus 18 s~EEW~~L~~~Qk~Lyrdvm~Eny~~l~slg~~~~~~~ 55 (64)
T d1v65a_ 18 TEEEWDLLDSSQKRLYEEVMLETYQNLTDIGYNWQDHH 55 (64)
T ss_dssp CHHHHHTSCHHHHHHHHHHHHHTTTSCCCSCCCCCCCC
T ss_pred CHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 85774076878888748889988676765336678887
No 3
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.83 E-value=31 Score=14.98 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=17.3
Q ss_pred CHHCCCHHHHHHHHHHHHHH
Q ss_conf 32118988998778999999
Q T0616 69 PYDELPEEEKEYDRNTAMNT 88 (103)
Q Consensus 69 py~~L~e~eK~~dr~~~~e~ 88 (103)
-|..|++.+|+.|.+.+.+.
T Consensus 58 ~W~~Ls~~eK~~Y~~~A~~~ 77 (90)
T d1wgfa_ 58 MWNDLSEKKKAKYKAREAAL 77 (90)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHH
T ss_conf 99849999999999999999
No 4
>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.15 E-value=17 Score=16.45 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=8.2
Q ss_pred CCCCCHHCCCHH
Q ss_conf 841232118988
Q T0616 65 PCLVPYDELPEE 76 (103)
Q Consensus 65 P~Lvpy~~L~e~ 76 (103)
-|++||+.|+..
T Consensus 2 ~MiIP~~~L~~e 13 (78)
T d1y0na_ 2 HMLIPHDLLEAD 13 (78)
T ss_dssp CEECCGGGSCHH
T ss_pred CEECCHHHCCHH
T ss_conf 605665769999
No 5
>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=19.89 E-value=19 Score=16.21 Aligned_cols=11 Identities=36% Similarity=0.597 Sum_probs=7.9
Q ss_pred CCCCHHCCCHH
Q ss_conf 41232118988
Q T0616 66 CLVPYDELPEE 76 (103)
Q Consensus 66 ~Lvpy~~L~e~ 76 (103)
|++||+.|++.
T Consensus 3 MiIP~~~L~~e 13 (78)
T d1y0na_ 3 MLIPHDLLEAD 13 (78)
T ss_dssp EECCGGGSCHH
T ss_pred CCCCHHCCCHH
T ss_conf 23672128988
No 6
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.66 E-value=35 Score=14.71 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=17.7
Q ss_pred CHHCCCHHHHHHHHHHHHHHH
Q ss_conf 321189889987789999999
Q T0616 69 PYDELPEEEKEYDRNTAMNTI 89 (103)
Q Consensus 69 py~~L~e~eK~~dr~~~~e~l 89 (103)
-|..||+.+|+.|.+.+.+.-
T Consensus 51 ~W~~Ls~~eK~~Y~~~a~~~k 71 (108)
T d1v64a_ 51 QWKLLSQKEKDAYHKKCDQKK 71 (108)
T ss_dssp HHHHSCHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHH
T ss_conf 884499999999999999999
No 7
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.24 E-value=36 Score=14.65 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=18.1
Q ss_pred CCHHCCCHHHHHHHHHHHHHHH
Q ss_conf 2321189889987789999999
Q T0616 68 VPYDELPEEEKEYDRNTAMNTI 89 (103)
Q Consensus 68 vpy~~L~e~eK~~dr~~~~e~l 89 (103)
.-|..||+.||..+.+.+.+.-
T Consensus 39 ~~Wk~ls~~eK~~y~~~A~~~k 60 (86)
T d2lefa_ 39 RRWHALSREEQAKYYELARKER 60 (86)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHH
T ss_conf 9998199999999999999999
No 8
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.45 E-value=39 Score=14.41 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=18.1
Q ss_pred CHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 3211898899877899999999
Q T0616 69 PYDELPEEEKEYDRNTAMNTIK 90 (103)
Q Consensus 69 py~~L~e~eK~~dr~~~~e~lk 90 (103)
-|..||+.+|..+.+.+.+...
T Consensus 44 ~Wk~ls~~eK~~Y~~~a~~~~~ 65 (101)
T d1v63a_ 44 RWQRISQSQKEHYKKLAEEQQR 65 (101)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9861999999999999999999
No 9
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus thermophilus [TaxId: 274]}
Probab=17.07 E-value=34 Score=14.77 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=6.9
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 999999988394114
Q T0616 86 MNTIKMVKKLGFRIE 100 (103)
Q Consensus 86 ~e~lk~l~~~Gy~I~ 100 (103)
+|++|.|...||.+.
T Consensus 8 kelik~L~~~Gf~~~ 22 (70)
T d1whza_ 8 EEVARKLRRLGFVER 22 (70)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCEEE
T ss_conf 999999998894895
No 10
>d1mska_ d.173.1.1 (A:) Methionine synthase SAM-binding domain {Escherichia coli [TaxId: 562]}
Probab=12.15 E-value=55 Score=13.57 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999988888999999998200027743
Q T0616 27 LIQLSERIAENVHEVWAKARIDEGWTYGEKR 57 (103)
Q Consensus 27 l~~l~e~lAen~H~~Wa~~k~~~GW~yG~~~ 57 (103)
+..|.++|||-.-+.|-..-..+-|.|+...
T Consensus 188 ~kaLadrlAEA~AE~lH~~vR~e~wGy~~~E 218 (327)
T d1mska_ 188 VKALADRLAEAFAEYLHERVRKVYWGYAPNE 218 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999999999999998724667888
Done!