Query T0617 3NRV, Acinetobacter sp. ADP1, 148 residues
Match_columns 148
No_of_seqs 131 out of 6702
Neff 8.8
Searched_HMMs 22458
Date Mon Jul 5 09:07:22 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0617.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0617.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fa5_A Transcriptional regulat 99.9 9.4E-24 4.2E-28 177.2 17.0 141 5-145 14-154 (162)
2 3cjn_A Transcriptional regulat 99.9 6.3E-24 2.8E-28 178.4 14.1 142 5-147 18-159 (162)
3 3deu_A Transcriptional regulat 99.9 2E-23 8.7E-28 175.1 13.9 140 8-148 22-162 (166)
4 3cdh_A Transcriptional regulat 99.9 1.4E-23 6E-28 176.2 12.6 146 1-147 1-150 (155)
5 2bv6_A MGRA, HTH-type transcri 99.9 1.7E-23 7.6E-28 175.5 12.3 141 5-147 2-142 (142)
6 3e6m_A MARR family transcripti 99.9 4.6E-23 2.1E-27 172.6 14.0 141 6-147 20-160 (161)
7 3k0l_A Repressor protein; heli 99.9 1.7E-22 7.7E-27 168.8 16.0 142 6-148 13-154 (162)
8 3jw4_A Transcriptional regulat 99.9 5.7E-23 2.5E-27 172.0 13.4 144 1-145 1-148 (148)
9 3boq_A Transcriptional regulat 99.9 1.8E-22 7.9E-27 168.7 15.4 136 12-147 19-155 (160)
10 3bja_A Transcriptional regulat 99.9 3.6E-22 1.6E-26 166.7 15.5 134 12-146 6-139 (139)
11 2nnn_A Probable transcriptiona 99.9 1.4E-22 6.4E-27 169.3 13.0 138 2-141 2-139 (140)
12 2rdp_A Putative transcriptiona 99.9 5E-22 2.2E-26 165.7 15.7 146 1-147 1-149 (150)
13 3eco_A MEPR; mutlidrug efflux 99.9 4.5E-22 2E-26 166.0 15.2 136 10-146 2-139 (139)
14 2pex_A Transcriptional regulat 99.9 8.3E-23 3.7E-27 170.9 11.4 140 5-147 13-152 (153)
15 3bro_A Transcriptional regulat 99.9 4.5E-22 2E-26 166.0 14.5 136 8-144 3-140 (141)
16 2fbk_A Transcriptional regulat 99.9 1.1E-21 4.8E-26 163.5 15.4 134 13-147 43-179 (181)
17 3bpv_A Transcriptional regulat 99.9 1.2E-21 5.5E-26 163.1 14.9 132 16-148 6-137 (138)
18 1z91_A Organic hydroperoxide r 99.9 5.7E-23 2.5E-27 172.0 7.9 144 1-147 2-145 (147)
19 3bj6_A Transcriptional regulat 99.9 1.8E-21 8.2E-26 161.9 15.5 147 1-148 1-148 (152)
20 2fbh_A Transcriptional regulat 99.9 1.5E-21 6.6E-26 162.6 14.6 137 10-147 8-145 (146)
21 1lj9_A Transcriptional regulat 99.9 1.5E-21 6.8E-26 162.5 14.4 134 13-147 3-136 (144)
22 3fm5_A Transcriptional regulat 99.9 4.2E-21 1.9E-25 159.6 15.7 139 5-144 5-144 (150)
23 1s3j_A YUSO protein; structura 99.9 3.5E-21 1.6E-25 160.1 15.1 135 12-147 10-144 (155)
24 3hsr_A HTH-type transcriptiona 99.9 1.2E-21 5.5E-26 163.1 12.1 137 5-144 2-138 (140)
25 3ech_A MEXR, multidrug resista 99.9 7.3E-21 3.2E-25 158.0 15.8 135 9-143 5-140 (142)
26 2gxg_A 146AA long hypothetical 99.9 1.1E-20 4.7E-25 156.9 16.0 134 13-148 11-144 (146)
27 2a61_A Transcriptional regulat 99.9 4.3E-21 1.9E-25 159.5 13.7 135 12-147 6-140 (145)
28 3g3z_A NMB1585, transcriptiona 99.9 1.6E-20 6.9E-25 155.8 15.1 131 16-147 8-138 (145)
29 3f3x_A Transcriptional regulat 99.9 7E-21 3.1E-25 158.1 13.1 141 4-145 1-143 (144)
30 2nyx_A Probable transcriptiona 99.9 2E-20 9E-25 155.0 15.1 136 12-147 16-152 (168)
31 3bdd_A Regulatory protein MARR 99.8 1.1E-20 5E-25 156.7 12.7 133 12-148 7-140 (142)
32 2qww_A Transcriptional regulat 99.8 1E-19 4.6E-24 150.3 15.1 125 23-147 24-152 (154)
33 2eth_A Transcriptional regulat 99.8 2.4E-20 1.1E-24 154.5 11.4 133 14-147 19-151 (154)
34 1jgs_A Multiple antibiotic res 99.8 3.9E-20 1.7E-24 153.1 12.4 129 12-141 7-136 (138)
35 2fbi_A Probable transcriptiona 99.8 2.7E-20 1.2E-24 154.1 11.4 132 11-143 8-139 (142)
36 2hr3_A Probable transcriptiona 99.8 7.4E-19 3.3E-23 144.6 12.2 137 8-146 4-142 (147)
37 2fxa_A Protease production reg 99.7 5E-18 2.2E-22 139.1 8.6 124 6-129 9-137 (207)
38 2frh_A SARA, staphylococcal ac 99.7 4.4E-16 2E-20 126.1 11.6 108 16-124 14-123 (127)
39 1p4x_A Staphylococcal accessor 99.6 5.8E-15 2.6E-19 118.7 10.3 98 25-122 19-118 (250)
40 1p4x_A Staphylococcal accessor 99.6 1.3E-14 5.8E-19 116.3 11.5 90 28-117 146-237 (250)
41 1ku9_A Hypothetical protein MJ 99.6 6.4E-14 2.8E-18 111.7 13.5 128 17-145 4-137 (152)
42 1ub9_A Hypothetical protein PH 99.3 1.2E-12 5.4E-17 103.2 5.9 82 39-120 15-96 (100)
43 2d1h_A ST1889, 109AA long hypo 99.3 5.4E-12 2.4E-16 98.9 6.9 96 30-125 11-107 (109)
44 1sfx_A Conserved hypothetical 99.3 2.6E-11 1.2E-15 94.3 9.1 95 33-128 13-107 (109)
45 3cta_A Riboflavin kinase; stru 99.1 2.4E-10 1.1E-14 87.9 7.1 82 36-120 3-90 (230)
46 1okr_A MECI, methicillin resis 98.8 2.4E-09 1.1E-13 81.2 3.6 103 34-139 4-121 (123)
47 1on2_A Transcriptional regulat 98.7 8.6E-08 3.8E-12 70.9 10.4 85 50-141 18-120 (142)
48 1sd4_A Penicillinase repressor 98.7 1.5E-07 6.6E-12 69.3 10.2 106 34-142 4-124 (126)
49 3hrs_A Metalloregulator SCAR; 98.6 7.9E-07 3.5E-11 64.5 10.8 86 44-135 6-97 (214)
50 1fx7_A Iron-dependent represso 98.5 8.7E-07 3.9E-11 64.2 10.9 93 38-136 4-102 (230)
51 2g9w_A Conserved hypothetical 98.5 4.7E-07 2.1E-11 66.0 9.1 106 37-145 6-126 (138)
52 2qq9_A Diphtheria toxin repres 98.5 1.4E-06 6.4E-11 62.7 10.8 80 51-136 21-102 (226)
53 2h09_A Transcriptional regulat 98.4 2.7E-06 1.2E-10 60.9 9.5 88 45-138 44-133 (155)
54 2k4b_A Transcriptional regulat 98.3 1.3E-07 5.8E-12 69.7 1.1 84 12-100 9-96 (99)
55 3b73_A PHIH1 repressor-like pr 98.2 1.2E-06 5.6E-11 63.1 5.0 67 38-110 11-79 (111)
56 1hsj_A Fusion protein consisti 98.2 2.6E-06 1.2E-10 61.0 6.0 94 20-114 385-480 (487)
57 2oqg_A Possible transcriptiona 98.2 7.3E-06 3.2E-10 58.0 8.2 73 33-110 15-87 (114)
58 1z7u_A Hypothetical protein EF 98.0 2.5E-05 1.1E-09 54.4 8.2 79 43-123 25-104 (112)
59 3f6o_A Probable transcriptiona 97.9 8.9E-06 4E-10 57.4 4.7 76 34-114 13-88 (118)
60 2esh_A Conserved hypothetical 97.9 5.5E-05 2.4E-09 52.2 8.7 77 40-117 13-99 (118)
61 3f6v_A Possible transcriptiona 97.9 9.9E-06 4.4E-10 57.1 4.7 69 39-111 57-125 (151)
62 3hhh_A Transcriptional regulat 97.9 4.4E-05 1.9E-09 52.8 7.9 79 39-118 12-98 (116)
63 2hzt_A Putative HTH-type trans 97.9 1.2E-05 5.4E-10 56.6 5.0 81 43-125 17-98 (107)
64 1u2w_A CADC repressor, cadmium 97.9 1.8E-05 7.9E-10 55.5 5.7 69 33-105 36-104 (122)
65 3f8b_A Transcriptional regulat 97.9 8E-05 3.6E-09 51.1 8.8 77 40-117 12-98 (116)
66 3cuo_A Uncharacterized HTH-typ 97.8 2.9E-05 1.3E-09 54.0 6.3 70 32-105 17-86 (99)
67 2f2e_A PA1607; transcription f 97.8 4.1E-05 1.8E-09 53.0 6.6 77 44-123 28-104 (146)
68 1yyv_A Putative transcriptiona 97.8 2.7E-05 1.2E-09 54.2 5.7 79 42-122 35-116 (131)
69 2fsw_A PG_0823 protein; alpha- 97.8 2.1E-05 9.4E-10 54.9 5.1 71 43-114 28-99 (107)
70 1uly_A Hypothetical protein PH 97.8 0.00016 7.2E-09 49.1 9.0 64 39-103 19-84 (192)
71 1b9m_A Protein (mode); DNA-bin 97.7 0.00012 5.4E-09 49.9 7.9 81 36-120 18-101 (265)
72 2dql_A PEX protein; circadian 97.7 0.00011 4.9E-09 50.2 7.4 84 37-121 19-112 (115)
73 1xma_A Predicted transcription 97.7 0.00019 8.3E-09 48.6 8.1 82 40-122 41-132 (145)
74 1p6r_A Penicillinase repressor 97.7 3.8E-05 1.7E-09 53.3 4.5 61 37-100 6-70 (82)
75 1r1u_A CZRA, repressor protein 97.6 0.00022 9.6E-09 48.2 8.2 67 33-104 20-86 (106)
76 3elk_A Putative transcriptiona 97.6 7E-05 3.1E-09 51.5 5.6 85 41-126 15-110 (117)
77 3df8_A Possible HXLR family tr 97.6 0.00011 4.7E-09 50.3 6.5 69 43-115 30-100 (111)
78 2kko_A Possible transcriptiona 97.6 5.5E-05 2.4E-09 52.2 5.0 68 34-106 20-87 (108)
79 1r1t_A Transcriptional repress 97.6 0.0002 8.8E-09 48.5 7.8 67 33-104 40-106 (122)
80 2p4w_A Transcriptional regulat 97.6 4.5E-05 2E-09 52.8 4.5 65 39-104 14-80 (202)
81 3jth_A Transcription activator 97.6 0.00012 5.4E-09 49.9 6.1 68 33-105 17-84 (98)
82 2zkz_A Transcriptional repress 97.6 6.9E-05 3.1E-09 51.5 4.6 69 33-106 21-89 (99)
83 1yg2_A Gene activator APHA; vi 97.6 0.00021 9.3E-09 48.3 7.1 93 42-135 4-115 (179)
84 2vn2_A DNAD, chromosome replic 97.5 0.0003 1.4E-08 47.2 7.5 73 34-106 26-105 (128)
85 3c7j_A Transcriptional regulat 97.5 0.0011 4.9E-08 43.5 10.3 87 54-143 49-136 (237)
86 3hhg_A Transcriptional regulat 97.5 0.00054 2.4E-08 45.6 8.7 75 37-120 2-79 (306)
87 2rkh_A Putative APHA-like tran 97.5 0.00027 1.2E-08 47.5 7.1 99 37-136 7-128 (180)
88 2qvo_A Uncharacterized protein 97.5 0.00022 9.9E-09 48.1 6.6 76 38-116 10-89 (95)
89 2v79_A DNA replication protein 97.5 0.00029 1.3E-08 47.4 6.8 70 34-103 26-102 (135)
90 1mkm_A ICLR transcriptional re 97.4 0.00076 3.4E-08 44.6 8.7 64 42-111 10-74 (249)
91 3fxq_A LYSR type regulator of 97.4 0.00045 2E-08 46.1 7.1 74 38-120 2-78 (305)
92 2jsc_A Transcriptional regulat 97.3 0.00018 8.1E-09 48.7 4.3 67 33-104 15-81 (118)
93 1ixc_A CBNR, LYSR-type regulat 97.2 0.0015 6.8E-08 42.6 8.3 74 38-120 1-77 (294)
94 2o0m_A Transcriptional regulat 97.2 3.6E-05 1.6E-09 53.4 0.0 67 43-116 23-89 (345)
95 1y0u_A Arsenical resistance op 97.2 0.00083 3.7E-08 44.3 6.9 67 31-107 23-89 (96)
96 1z6r_A MLC protein; transcript 97.2 0.00037 1.6E-08 46.7 5.1 47 41-87 17-63 (406)
97 2zfw_A PEX; five alpha-helices 97.2 0.00017 7.6E-09 48.9 3.3 81 38-119 42-132 (148)
98 1z05_A Transcriptional regulat 97.2 0.00021 9.3E-09 48.3 3.5 47 41-87 40-86 (429)
99 2ia0_A Putative HTH-type trans 97.1 0.00075 3.3E-08 44.6 5.8 53 35-87 12-64 (171)
100 2w25_A Probable transcriptiona 97.1 0.00082 3.6E-08 44.4 5.8 52 37-88 4-55 (150)
101 2ijl_A AGR_C_4647P, molybdenum 97.1 0.0021 9.2E-08 41.7 7.8 78 38-119 24-104 (135)
102 2cg4_A Regulatory protein ASNC 97.1 0.00094 4.2E-08 44.0 5.8 52 35-86 3-54 (152)
103 2pn6_A ST1022, 150AA long hypo 97.0 0.0012 5.5E-08 43.2 6.2 51 38-88 1-51 (150)
104 1i1g_A Transcriptional regulat 97.0 0.0011 5E-08 43.4 5.7 55 38-92 2-56 (141)
105 2dbb_A Putative HTH-type trans 97.0 0.0011 4.7E-08 43.6 5.5 51 37-87 6-56 (151)
106 2g7u_A Transcriptional regulat 96.9 0.0012 5.5E-08 43.2 5.6 60 42-108 16-76 (257)
107 2o0y_A Transcriptional regulat 96.9 0.0011 4.7E-08 43.6 5.2 64 42-111 25-89 (260)
108 2cfx_A HTH-type transcriptiona 96.9 0.0011 4.9E-08 43.5 5.3 52 38-89 3-54 (144)
109 2cyy_A Putative HTH-type trans 96.9 0.0015 6.7E-08 42.6 5.9 52 37-88 4-55 (151)
110 2e1n_A PEX, period extender; c 96.9 0.00069 3.1E-08 44.8 4.2 80 41-121 35-124 (138)
111 3fzv_A Probable transcriptiona 96.9 0.0064 2.9E-07 38.4 9.2 77 38-120 4-81 (306)
112 2e1c_A Putative HTH-type trans 96.9 0.0021 9.1E-08 41.7 6.5 52 37-88 24-75 (171)
113 1r7j_A Conserved hypothetical 96.9 0.0033 1.5E-07 40.3 7.5 66 43-117 11-76 (95)
114 3i4p_A Transcriptional regulat 96.9 0.0016 7.3E-08 42.4 6.0 54 39-92 2-55 (162)
115 2p5v_A Transcriptional regulat 96.9 0.0014 6E-08 42.9 5.5 53 35-87 5-57 (162)
116 2ia2_A Putative transcriptiona 96.9 0.00034 1.5E-08 46.9 2.4 59 42-107 23-82 (265)
117 2esn_A Probable transcriptiona 96.9 0.0035 1.5E-07 40.2 7.5 78 38-121 10-87 (310)
118 2hoe_A N-acetylglucosamine kin 96.9 0.00066 2.9E-08 45.0 3.7 58 44-102 24-84 (380)
119 1jhf_A LEXA repressor; LEXA SO 96.9 0.0015 6.8E-08 42.6 5.6 55 37-91 3-63 (202)
120 3isp_A HTH-type transcriptiona 96.8 0.0028 1.3E-07 40.8 6.5 79 37-126 5-86 (303)
121 3ihu_A Transcriptional regulat 96.7 0.03 1.3E-06 34.0 11.2 89 54-145 39-129 (222)
122 2qlz_A Transcription factor PF 96.7 0.00019 8.7E-09 48.5 -0.1 64 39-103 11-77 (232)
123 2w48_A Sorbitol operon regulat 96.4 0.0018 8.1E-08 42.0 3.5 47 47-93 14-60 (315)
124 2ek5_A Predicted transcription 96.4 0.024 1.1E-06 34.6 9.1 76 56-137 30-112 (129)
125 3by6_A Predicted transcription 96.4 0.024 1.1E-06 34.6 9.1 77 55-135 36-115 (126)
126 1xd7_A YWNA; structural genomi 96.4 0.0052 2.3E-07 39.0 5.5 64 42-108 11-74 (145)
127 3kcc_A Catabolite gene activat 96.3 0.023 1E-06 34.7 8.7 34 54-87 217-250 (260)
128 3lmm_A Uncharacterized protein 96.3 0.0074 3.3E-07 38.0 6.1 72 35-108 425-496 (583)
129 3iwz_A CAP-like, catabolite ac 96.3 0.018 8.1E-07 35.4 8.1 34 54-87 187-220 (230)
130 2gau_A Transcriptional regulat 96.3 0.036 1.6E-06 33.4 9.5 33 54-86 180-212 (232)
131 3e97_A Transcriptional regulat 96.2 0.018 8.1E-07 35.4 7.5 34 54-87 175-208 (231)
132 3dkw_A DNR protein; CRP-FNR, H 96.1 0.02 8.9E-07 35.1 7.5 34 54-87 178-211 (227)
133 3k69_A Putative transcription 96.1 0.0089 4E-07 37.4 5.5 52 42-93 14-67 (162)
134 3e6c_C CPRK, cyclic nucleotide 96.1 0.035 1.6E-06 33.5 8.5 34 54-87 177-210 (250)
135 2zdb_A Transcriptional regulat 96.0 0.02 8.9E-07 35.1 7.1 34 54-87 139-172 (195)
136 1ft9_A Carbon monoxide oxidati 96.0 0.025 1.1E-06 34.5 7.5 34 54-87 163-196 (222)
137 1zyb_A Transcription regulator 96.0 0.026 1.2E-06 34.4 7.5 52 37-88 160-220 (232)
138 3eyy_A Putative iron uptake re 95.9 0.018 7.9E-07 35.4 6.4 60 33-92 10-76 (145)
139 2gqq_A Leucine-responsive regu 95.9 0.0014 6E-08 42.9 0.7 50 37-86 10-59 (163)
140 1j5y_A Transcriptional regulat 95.9 0.0096 4.3E-07 37.2 5.0 46 41-86 22-68 (187)
141 2qc0_A Uncharacterized protein 95.8 0.023 1E-06 34.7 6.5 67 37-107 294-360 (373)
142 3dv8_A Transcriptional regulat 95.8 0.11 4.9E-06 30.2 10.0 34 54-87 169-202 (220)
143 3dbw_A Transcriptional regulat 95.7 0.055 2.5E-06 32.2 8.4 86 54-142 43-130 (226)
144 2fmy_A COOA, carbon monoxide o 95.6 0.052 2.3E-06 32.3 7.9 33 54-86 167-199 (220)
145 2oz6_A Virulence factor regula 95.6 0.057 2.5E-06 32.1 7.9 34 54-87 164-197 (207)
146 3fx3_A Cyclic nucleotide-bindi 95.5 0.056 2.5E-06 32.2 7.8 51 35-85 148-209 (237)
147 3lwf_A LIN1550 protein, putati 95.5 0.016 6.9E-07 35.8 4.9 51 43-93 30-83 (159)
148 2h9b_A HTH-type transcriptiona 95.5 0.0019 8.3E-08 42.0 0.0 73 39-120 2-77 (312)
149 3l09_A Putative transcriptiona 95.4 0.01 4.6E-07 37.0 3.7 73 39-114 21-102 (266)
150 2z99_A Putative uncharacterize 95.4 0.021 9.5E-07 34.9 5.3 70 36-108 96-165 (219)
151 1ylf_A RRF2 family protein; st 95.4 0.04 1.8E-06 33.1 6.6 59 43-104 17-77 (149)
152 2fe3_A Peroxide operon regulat 95.4 0.061 2.7E-06 31.9 7.6 59 34-92 16-80 (145)
153 3lmm_A Uncharacterized protein 95.4 0.0021 9.2E-08 41.7 0.0 57 44-103 520-576 (583)
154 2zcw_A TTHA1359, transcription 95.3 0.071 3.2E-06 31.4 7.6 35 54-88 146-180 (202)
155 2h98_A HTH-type transcriptiona 95.3 0.0023 1E-07 41.3 0.0 73 39-120 2-77 (313)
156 1uth_A LYSR-type regulatory pr 95.3 0.0024 1.1E-07 41.3 0.0 77 37-122 13-92 (315)
157 1stz_A Heat-inducible transcri 95.2 0.092 4.1E-06 30.7 7.9 71 37-112 14-91 (338)
158 2hs5_A Putative transcriptiona 95.2 0.067 3E-06 31.6 7.2 84 54-143 51-136 (239)
159 2bgc_A PRFA; bacterial infecti 95.1 0.19 8.3E-06 28.7 11.3 56 54-114 169-225 (238)
160 1mzb_A Ferric uptake regulatio 95.1 0.087 3.9E-06 30.9 7.6 60 33-92 9-77 (136)
161 3iwf_A Transcription regulator 94.9 0.021 9.3E-07 35.0 3.9 51 37-87 14-68 (107)
162 2w57_A Ferric uptake regulatio 94.8 0.046 2.1E-06 32.7 5.6 58 34-91 9-75 (150)
163 2obp_A Putative DNA-binding pr 94.8 0.086 3.8E-06 30.9 7.0 75 37-113 13-93 (96)
164 2dk5_A DNA-directed RNA polyme 94.8 0.016 7.3E-07 35.7 3.1 64 37-100 17-82 (91)
165 1al3_A Cys regulon transcripti 94.7 0.0043 1.9E-07 39.5 0.0 73 40-120 3-79 (324)
166 3d0s_A Transcriptional regulat 94.6 0.22 1E-05 28.1 8.7 33 54-86 177-209 (227)
167 3dp7_A SAM-dependent methyltra 94.5 0.056 2.5E-06 32.1 5.4 62 42-110 37-99 (363)
168 2fu4_A Ferric uptake regulatio 94.5 0.097 4.3E-06 30.5 6.6 67 33-101 8-83 (83)
169 1o5l_A Transcriptional regulat 94.4 0.037 1.6E-06 33.3 4.3 34 54-87 164-197 (213)
170 1hw1_A FADR, fatty acid metabo 94.4 0.038 1.7E-06 33.2 4.3 35 55-89 31-66 (239)
171 1bia_A BIRA bifunctional prote 94.3 0.065 2.9E-06 31.7 5.3 47 39-85 4-50 (321)
172 2o3f_A Putative HTH-type trans 94.3 0.051 2.3E-06 32.4 4.7 54 36-89 17-74 (111)
173 2v7f_A RPS19, RPS19E SSU ribos 94.2 0.21 9.6E-06 28.2 7.9 68 44-117 57-138 (150)
174 2p8t_A Hypothetical protein PH 94.1 0.15 6.9E-06 29.2 7.0 65 43-114 18-83 (200)
175 1t6s_A Conserved hypothetical 94.0 0.033 1.5E-06 33.7 3.4 69 37-108 91-160 (162)
176 2ip2_A Probable phenazine-spec 94.0 0.12 5.4E-06 29.9 6.2 57 43-106 31-87 (334)
177 1je8_A Nitrate/nitrite respons 93.9 0.094 4.2E-06 30.6 5.5 43 37-81 21-63 (82)
178 3eet_A Putative GNTR-family tr 93.6 0.045 2E-06 32.8 3.4 36 55-90 54-89 (272)
179 3ic7_A Putative transcriptiona 93.6 0.056 2.5E-06 32.1 3.8 74 55-134 36-116 (126)
180 1xmk_A Double-stranded RNA-spe 93.5 0.039 1.7E-06 33.2 3.0 65 38-106 9-74 (79)
181 1zar_A RIO2 kinase; serine kin 93.5 0.17 7.5E-06 28.9 6.2 69 37-109 9-81 (282)
182 3c57_A Two component transcrip 93.4 0.16 7.1E-06 29.1 5.9 47 36-84 26-72 (95)
183 3bwg_A Uncharacterized HTH-typ 93.3 0.044 2E-06 32.8 3.1 35 55-89 30-64 (239)
184 2wv0_A YVOA, HTH-type transcri 93.2 0.059 2.6E-06 32.0 3.5 36 55-90 35-70 (243)
185 3edp_A LIN2111 protein; APC883 93.2 0.048 2.2E-06 32.5 3.1 35 56-90 35-69 (236)
186 1pdn_C Protein (PRD paired); p 93.2 0.28 1.2E-05 27.5 6.9 72 37-112 17-88 (128)
187 2o03_A Probable zinc uptake re 93.0 0.058 2.6E-06 32.0 3.2 55 38-92 9-69 (131)
188 1x19_A CRTF-related protein; m 93.0 0.14 6.2E-06 29.5 5.2 59 42-108 53-111 (359)
189 2r3s_A Uncharacterized protein 93.0 0.075 3.3E-06 31.3 3.7 58 43-108 29-86 (335)
190 1bja_A Transcription regulator 93.0 0.36 1.6E-05 26.7 7.2 75 36-117 12-87 (95)
191 3l4g_A Phenylalanyl-tRNA synth 92.9 0.014 6.4E-07 36.1 0.0 72 42-116 7-79 (508)
192 1qbj_A Protein (double-strande 92.6 0.12 5.3E-06 29.9 4.4 61 42-106 12-75 (81)
193 2htj_A P fimbrial regulatory p 92.6 0.18 7.9E-06 28.8 5.2 51 44-94 4-54 (81)
194 2di3_A Bacterial regulatory pr 92.5 0.1 4.7E-06 30.3 4.0 39 55-93 28-67 (239)
195 1p4w_A RCSB; solution structur 92.3 0.25 1.1E-05 27.8 5.7 43 37-81 34-76 (99)
196 1fse_A GERE; helix-turn-helix 92.2 0.2 8.9E-06 28.4 5.1 47 33-81 7-53 (74)
197 1k78_A Paired box protein PAX5 92.2 0.59 2.6E-05 25.3 7.5 72 38-113 33-104 (149)
198 1qgp_A Protein (double strande 92.1 0.11 4.9E-06 30.2 3.6 49 41-89 15-66 (77)
199 2krf_A Transcriptional regulat 91.8 0.25 1.1E-05 27.8 5.2 45 36-82 11-55 (73)
200 3jyv_T S19E protein; eukaryoti 91.8 0.2 8.9E-06 28.4 4.7 66 44-115 57-136 (141)
201 3kfw_X Uncharacterized protein 91.7 0.2 8.7E-06 28.5 4.6 61 49-112 14-78 (247)
202 3c3w_A Two component transcrip 91.6 0.36 1.6E-05 26.8 5.9 43 37-81 149-191 (225)
203 1wi9_A Protein C20ORF116 homol 91.6 0.12 5.1E-06 30.0 3.3 59 44-105 11-69 (72)
204 1u78_A TC3 transposase, transp 91.5 0.3 1.3E-05 27.3 5.3 68 37-112 6-73 (141)
205 2yu3_A DNA-directed RNA polyme 91.4 0.19 8.6E-06 28.5 4.3 55 37-91 34-90 (95)
206 1x3u_A Transcriptional regulat 91.3 0.26 1.2E-05 27.7 4.9 43 37-81 16-58 (79)
207 3dn7_A Cyclic nucleotide bindi 90.8 0.17 7.4E-06 29.0 3.5 37 44-80 154-194 (194)
208 3i53_A O-methyltransferase; CO 90.8 0.18 8.2E-06 28.7 3.7 45 43-88 28-72 (332)
209 3cuq_B Vacuolar protein-sortin 90.6 0.38 1.7E-05 26.6 5.2 49 42-90 156-204 (218)
210 3f8m_A GNTR-family protein tra 90.5 0.14 6.4E-06 29.4 2.9 32 55-86 37-68 (248)
211 2rnj_A Response regulator prot 90.3 0.3 1.3E-05 27.3 4.5 45 37-83 29-73 (91)
212 3klo_A Transcriptional regulat 90.1 0.35 1.5E-05 26.8 4.7 43 37-81 159-201 (225)
213 2heo_A Z-DNA binding protein 1 90.1 0.25 1.1E-05 27.8 3.9 49 39-87 9-58 (67)
214 1l3l_A Transcriptional activat 90.0 0.58 2.6E-05 25.4 5.7 44 36-81 172-215 (234)
215 3cuq_A Vacuolar-sorting protei 89.5 0.54 2.4E-05 25.6 5.2 54 38-91 152-205 (234)
216 3clo_A Transcriptional regulat 89.5 0.52 2.3E-05 25.7 5.1 44 37-82 197-240 (258)
217 2qlz_A Transcription factor PF 89.1 0.5 2.2E-05 25.8 4.8 51 39-89 163-213 (232)
218 1v4r_A Transcriptional repress 89.1 0.061 2.7E-06 31.9 0.1 35 56-90 37-71 (102)
219 1jhg_A Trp operon repressor; c 89.0 1 4.5E-05 23.8 6.3 78 1-80 1-84 (101)
220 1xsv_A Hypothetical UPF0122 pr 88.7 0.81 3.6E-05 24.4 5.7 42 38-80 26-67 (113)
221 1a04_A Nitrate/nitrite respons 88.4 0.9 4E-05 24.1 5.7 43 37-81 154-196 (215)
222 3lst_A CALO1 methyltransferase 88.3 0.19 8.5E-06 28.6 2.2 51 51-108 52-102 (348)
223 2b0l_A GTP-sensing transcripti 88.3 0.43 1.9E-05 26.3 4.0 55 37-91 21-80 (102)
224 1s7o_A Hypothetical UPF0122 pr 88.2 0.95 4.2E-05 23.9 5.8 41 38-79 23-63 (113)
225 1tbx_A ORF F-93, hypothetical 88.1 1.3 6E-05 22.9 7.7 74 39-115 7-84 (99)
226 1zg3_A Isoflavanone 4'-O-methy 88.1 0.49 2.2E-05 25.9 4.2 68 40-107 30-105 (358)
227 3gwz_A MMCR; methyltransferase 87.9 0.32 1.4E-05 27.1 3.2 55 47-107 65-119 (369)
228 1u5t_A Appears to BE functiona 87.9 0.51 2.2E-05 25.8 4.2 53 37-89 164-216 (233)
229 1qzz_A RDMB, aclacinomycin-10- 87.8 0.52 2.3E-05 25.7 4.2 43 45-88 41-83 (374)
230 1mw9_X DNA topoisomerase I; de 87.7 0.69 3.1E-05 24.9 4.8 51 56-113 478-532 (592)
231 2pg4_A Uncharacterized protein 87.6 1.4 6.4E-05 22.8 7.1 62 51-114 26-89 (95)
232 2gai_A DNA topoisomerase I; zi 87.6 0.41 1.8E-05 26.4 3.6 51 56-113 446-500 (633)
233 1rp3_A RNA polymerase sigma fa 87.3 1.2 5.3E-05 23.3 5.8 30 52-81 113-142 (239)
234 1jko_C HIN recombinase, DNA-in 87.2 0.31 1.4E-05 27.2 2.8 38 37-75 5-42 (52)
235 1tw3_A COMT, carminomycin 4-O- 87.2 0.45 2E-05 26.1 3.6 43 45-88 44-86 (360)
236 2q0o_A Probable transcriptiona 87.1 1.5 6.8E-05 22.5 7.2 44 36-81 174-217 (236)
237 2ra5_A Putative transcriptiona 87.0 0.075 3.4E-06 31.3 -0.4 35 56-90 42-76 (247)
238 2jpc_A SSRB; DNA binding prote 86.7 0.74 3.3E-05 24.7 4.5 39 41-81 2-40 (61)
239 2ict_A Antitoxin HIGA; helix-t 86.5 0.4 1.8E-05 26.4 3.0 32 45-76 12-43 (94)
240 3frw_A Putative Trp repressor 86.3 1.4 6.1E-05 22.9 5.7 46 33-79 33-83 (107)
241 2ve8_A FTSK, DNA translocase F 86.0 0.77 3.4E-05 24.6 4.3 57 44-101 14-70 (73)
242 2k27_A Paired box protein PAX- 86.0 0.35 1.5E-05 26.9 2.5 61 48-112 36-96 (159)
243 2o8x_A Probable RNA polymerase 85.8 1.1 4.8E-05 23.6 4.9 43 37-80 15-57 (70)
244 3mky_B Protein SOPB; partition 85.4 0.99 4.4E-05 23.8 4.6 55 37-91 23-80 (189)
245 1uxc_A FRUR (1-57), fructose r 85.3 0.43 1.9E-05 26.3 2.7 23 55-77 1-23 (65)
246 2p7v_B Sigma-70, RNA polymeras 84.9 1.6 6.9E-05 22.5 5.4 44 37-80 5-51 (68)
247 2kpj_A SOS-response transcript 84.5 0.7 3.1E-05 24.8 3.5 31 46-76 14-44 (94)
248 2a6c_A Helix-turn-helix motif; 84.2 0.87 3.9E-05 24.2 3.9 32 45-76 22-53 (83)
249 2pjp_A Selenocysteine-specific 84.1 1 4.6E-05 23.7 4.2 38 52-89 18-55 (121)
250 2fna_A Conserved hypothetical 84.0 2 9E-05 21.7 5.7 50 38-87 288-341 (357)
251 1ldj_A Cullin homolog 1, CUL-1 83.9 0.79 3.5E-05 24.5 3.6 53 37-89 586-638 (760)
252 1zx4_A P1 PARB, plasmid partit 83.7 1.5 6.6E-05 22.7 4.9 40 52-91 22-62 (192)
253 2nr3_A Hypothetical protein; A 83.6 1.5 6.6E-05 22.6 4.9 71 37-110 21-116 (183)
254 1q1h_A TFE, transcription fact 83.6 0.8 3.6E-05 24.4 3.5 55 33-89 13-68 (110)
255 1qpz_A PURA, protein (purine n 82.5 0.61 2.7E-05 25.2 2.5 21 56-76 2-22 (340)
256 3bdn_A Lambda repressor; repre 82.3 1 4.6E-05 23.7 3.6 26 51-76 27-52 (236)
257 2hsg_A Glucose-resistance amyl 82.3 0.5 2.2E-05 25.8 2.0 22 55-76 3-24 (332)
258 1ku3_A Sigma factor SIGA; heli 82.1 2.5 0.00011 21.1 6.0 44 37-80 10-56 (73)
259 2hgc_A YJCQ protein; SR346, st 82.1 1.3 5.9E-05 23.0 4.1 66 43-112 8-77 (102)
260 2elh_A CG11849-PA, LD40883P; s 81.9 2.6 0.00011 21.1 6.0 53 38-92 23-76 (87)
261 3b7h_A Prophage LP1 protein 11 81.9 0.8 3.6E-05 24.4 2.9 30 46-75 12-41 (78)
262 3kjx_A Transcriptional regulat 81.6 0.64 2.9E-05 25.1 2.4 25 52-76 8-32 (344)
263 3fmy_A HTH-type transcriptiona 81.5 0.96 4.3E-05 23.9 3.2 30 45-74 15-44 (73)
264 3cec_A Putative antidote prote 81.5 0.71 3.1E-05 24.8 2.5 38 37-76 16-53 (104)
265 3maj_A DNA processing chain A; 80.9 1.1 4.9E-05 23.5 3.4 52 37-89 325-376 (382)
266 2fjr_A Repressor protein CI; g 80.7 0.59 2.6E-05 25.3 1.9 37 40-76 5-42 (189)
267 1sfu_A 34L protein; protein/Z- 80.6 0.54 2.4E-05 25.6 1.7 40 52-91 27-66 (75)
268 3bs3_A Putative DNA-binding pr 80.5 0.88 3.9E-05 24.2 2.8 31 46-76 15-45 (76)
269 2eby_A Putative HTH-type trans 80.4 1 4.4E-05 23.8 3.0 40 37-77 8-47 (113)
270 1i7d_A DNA topoisomerase III; 80.3 1.4 6.1E-05 22.9 3.7 40 67-113 524-563 (659)
271 3aaf_A Werner syndrome ATP-dep 80.3 1.2 5.4E-05 23.2 3.4 47 65-112 64-110 (134)
272 1b0n_A Protein (SINR protein); 79.9 0.95 4.2E-05 23.9 2.8 27 118-144 82-108 (111)
273 2co5_A Viral protein F93; vira 79.9 2.5 0.00011 21.2 4.9 79 38-119 7-92 (99)
274 1x57_A Endothelial differentia 79.8 1.9 8.3E-05 22.0 4.2 34 42-75 14-47 (91)
275 1oyi_A Double-stranded RNA-bin 79.7 1.3 5.6E-05 23.1 3.3 46 47-93 24-69 (82)
276 3eus_A DNA-binding protein; st 79.2 1 4.6E-05 23.7 2.8 30 46-75 19-48 (86)
277 3mlf_A Transcriptional regulat 78.8 1.4 6.1E-05 22.9 3.3 32 45-76 27-58 (111)
278 3ivp_A Putative transposon-rel 78.8 1.4 6E-05 22.9 3.3 25 120-144 88-112 (126)
279 2wiu_B HTH-type transcriptiona 78.2 1.2 5.5E-05 23.2 2.9 38 39-76 9-47 (88)
280 1zug_A Phage 434 CRO protein; 78.0 1.2 5.3E-05 23.3 2.8 30 46-75 8-37 (71)
281 3h5t_A Transcriptional regulat 77.6 0.99 4.4E-05 23.8 2.3 26 52-77 7-32 (366)
282 2b5a_A C.BCLI; helix-turn-heli 77.2 1.3 5.7E-05 23.1 2.8 31 45-75 14-44 (77)
283 1y7y_A C.AHDI; helix-turn-heli 77.2 1.3 5.7E-05 23.1 2.8 32 45-76 17-48 (74)
284 1kyz_A COMT, caffeic acid 3-O- 77.1 2.8 0.00012 20.9 4.4 66 42-107 41-115 (365)
285 1tty_A Sigma-A, RNA polymerase 76.6 3.7 0.00017 20.0 6.0 44 37-80 18-64 (87)
286 3e3m_A Transcriptional regulat 76.5 0.4 1.8E-05 26.5 0.0 24 54-77 12-35 (355)
287 1lmb_3 Protein (lambda repress 75.9 1.3 5.9E-05 23.0 2.5 25 50-74 26-50 (92)
288 1utx_A CYLR2; DNA-binding prot 75.9 1.5 6.6E-05 22.7 2.8 29 47-75 7-35 (66)
289 3hug_A RNA polymerase sigma fa 75.8 3.9 0.00017 19.9 6.0 41 37-78 37-77 (92)
290 3g5g_A Regulatory protein; tra 75.5 1.9 8.5E-05 21.9 3.3 33 43-75 30-62 (99)
291 2jn6_A Protein CGL2762, transp 75.4 1.5 6.7E-05 22.6 2.7 34 49-82 18-51 (97)
292 3gn5_A HTH-type transcriptiona 75.4 1.9 8.4E-05 22.0 3.2 34 38-74 71-104 (133)
293 3clc_A Regulatory protein; pro 75.2 2 8.8E-05 21.8 3.3 31 44-74 14-44 (82)
294 2o20_A Catabolite control prot 75.2 0.45 2E-05 26.1 0.0 26 52-77 3-28 (332)
295 2v9v_A Selenocysteine-specific 74.9 4.1 0.00018 19.7 9.0 89 40-133 3-95 (135)
296 2ewt_A BLDD, putative DNA-bind 74.5 1.7 7.5E-05 22.3 2.8 30 45-74 12-43 (71)
297 2bnm_A Epoxidase; oxidoreducta 74.4 1.8 8.1E-05 22.1 2.9 15 57-71 56-70 (198)
298 2ef8_A C.ECOT38IS, putative tr 74.4 1.8 8.1E-05 22.1 2.9 31 45-75 14-44 (84)
299 3h5o_A Transcriptional regulat 74.2 0.49 2.2E-05 25.8 0.0 23 55-77 5-27 (339)
300 2aqe_A Transcriptional adaptor 73.6 4.4 0.0002 19.5 5.5 58 29-86 27-89 (90)
301 1r69_A Repressor protein CI; g 73.3 1.9 8.3E-05 22.0 2.8 31 46-76 6-36 (69)
302 1xn7_A Hypothetical protein YH 73.2 3.2 0.00014 20.4 4.0 47 47-93 9-55 (78)
303 3eyi_A Z-DNA-binding protein 1 73.2 2.5 0.00011 21.1 3.4 48 41-88 11-59 (72)
304 1y9q_A Transcriptional regulat 72.9 2.1 9.4E-05 21.6 3.0 15 57-71 56-70 (192)
305 2ppx_A AGR_C_3184P, uncharacte 72.9 2.1 9.2E-05 21.7 2.9 30 45-74 34-63 (99)
306 2a6h_F RNA polymerase sigma fa 72.6 2.3 0.0001 21.3 3.1 71 3-74 223-305 (423)
307 3hot_A Transposable element ma 72.6 4.7 0.00021 19.3 4.7 39 45-86 77-115 (345)
308 1in4_A RUVB, holliday junction 72.4 4.7 0.00021 19.3 6.5 66 36-108 255-324 (334)
309 3dbi_A Sugar-binding transcrip 72.3 0.59 2.6E-05 25.3 0.0 23 55-77 4-26 (338)
310 3kxa_A NGO0477 protein, putati 72.2 2.4 0.00011 21.3 3.1 31 45-75 72-102 (141)
311 3bil_A Probable LACI-family tr 72.2 0.59 2.6E-05 25.3 0.0 26 52-77 6-31 (348)
312 2jtv_A Protein of unknown func 71.4 3.6 0.00016 20.1 3.9 60 39-108 3-62 (65)
313 1jye_A Lactose operon represso 71.1 0.64 2.9E-05 25.1 0.0 24 54-77 3-26 (349)
314 3kz3_A Repressor protein CI; f 71.0 1.9 8.4E-05 21.9 2.4 24 51-74 22-45 (80)
315 2r1j_L Repressor protein C2; p 71.0 1.9 8.4E-05 22.0 2.4 31 45-75 9-39 (68)
316 3jvd_A Transcriptional regulat 70.6 0.67 3E-05 24.9 0.0 25 52-76 4-28 (333)
317 2auw_A Hypothetical protein NE 70.5 2.6 0.00011 21.1 3.0 35 37-74 89-123 (170)
318 3f6w_A XRE-family like protein 70.1 2 9.1E-05 21.7 2.4 30 45-74 18-47 (83)
319 3f52_A CLP gene regulator (CLG 70.0 2.1 9.2E-05 21.7 2.4 31 45-75 32-62 (117)
320 2o38_A Hypothetical protein; a 69.8 1.8 8E-05 22.1 2.0 26 50-75 49-74 (120)
321 1fp2_A Isoflavone O-methytrans 69.8 5.4 0.00024 18.9 5.0 63 41-107 37-103 (352)
322 1fp1_D Isoliquiritigenin 2'-O- 69.7 1.3 6E-05 22.9 1.4 66 42-107 46-123 (372)
323 1or7_A Sigma-24, RNA polymeras 69.5 5.4 0.00024 18.9 8.1 41 38-79 141-181 (194)
324 1olt_A Oxygen-independent copr 69.5 2 8.9E-05 21.8 2.2 73 36-115 361-440 (457)
325 1adr_A P22 C2 repressor; trans 69.4 2 8.8E-05 21.8 2.2 30 46-75 10-39 (76)
326 2cuj_A Transcriptional adaptor 69.3 5.5 0.00024 18.9 6.9 75 5-86 28-107 (108)
327 2jvl_A TRMBF1; coactivator, he 69.2 2.3 0.0001 21.4 2.5 31 45-75 38-70 (107)
328 1r71_A Transcriptional repress 69.0 5.5 0.00025 18.8 6.2 43 36-79 34-77 (178)
329 1hlv_A CENP-B, major centromer 69.0 5.6 0.00025 18.8 8.6 85 37-128 7-95 (131)
330 2ofy_A Putative XRE-family tra 68.8 5.4 0.00024 18.9 4.3 22 53-74 26-47 (86)
331 3ctp_A Periplasmic binding pro 67.6 0.85 3.8E-05 24.3 0.0 22 56-77 4-25 (330)
332 1tlh_B Sigma-70, RNA polymeras 67.6 5.6 0.00025 18.8 4.2 45 37-81 18-65 (81)
333 1l0o_C Sigma factor; bergerat 67.2 0.87 3.9E-05 24.2 0.0 27 52-78 128-154 (243)
334 1l9z_H Sigma factor SIGA; heli 67.1 6.1 0.00027 18.6 7.0 69 3-72 238-318 (438)
335 2k9s_A Arabinose operon regula 66.4 6.2 0.00028 18.5 5.2 27 53-79 19-45 (107)
336 2p5t_A Putative transcriptiona 65.2 1 4.5E-05 23.8 0.0 25 51-75 11-35 (158)
337 2pi2_A Replication protein A 3 62.6 1.2 5.4E-05 23.3 0.0 55 38-92 205-263 (270)
338 1u8b_A ADA polyprotein; protei 62.2 6.1 0.00027 18.6 3.5 31 50-80 89-119 (133)
339 1yio_A Response regulatory pro 62.0 7.5 0.00033 18.0 10.1 44 36-81 141-184 (208)
340 2v57_A TETR family transcripti 61.3 6.4 0.00028 18.4 3.5 28 47-74 25-52 (190)
341 1gdt_A GD resolvase, protein ( 60.8 5 0.00022 19.1 2.9 25 53-77 157-181 (183)
342 1ufm_A COP9 complex subunit 4; 60.3 6.3 0.00028 18.5 3.3 52 42-93 18-69 (84)
343 2k02_A Ferrous iron transport 59.9 3.8 0.00017 20.0 2.1 46 47-92 9-54 (87)
344 2r0q_C Putative transposon TN5 59.5 4.3 0.00019 19.6 2.4 26 52-77 173-198 (209)
345 2g7g_A RHA04620, putative tran 59.0 4.6 0.00021 19.4 2.5 39 37-75 10-50 (213)
346 3mkl_A HTH-type transcriptiona 57.7 8.9 0.0004 17.5 4.3 42 36-77 47-95 (120)
347 3bd1_A CRO protein; transcript 57.7 5.4 0.00024 18.9 2.6 26 49-76 8-33 (79)
348 1umq_A Photosynthetic apparatu 56.8 9.2 0.00041 17.4 4.4 33 44-77 45-77 (81)
349 3dfg_A Xcrecx, regulatory prot 56.6 9.2 0.00041 17.4 6.2 89 45-140 23-122 (162)
350 2q1z_A RPOE, ECF SIGE; ECF sig 55.9 4.1 0.00018 19.7 1.8 22 115-136 125-146 (184)
351 1eto_A FIS, factor for inversi 55.4 9.7 0.00043 17.2 3.9 34 44-78 62-95 (98)
352 1iuf_A Centromere ABP1 protein 55.1 9.8 0.00044 17.2 7.9 49 36-86 10-66 (144)
353 2hye_C Cullin-4A, CUL-4A; beta 55.0 3.3 0.00015 20.3 1.2 50 38-87 591-642 (759)
354 3bqy_A Putative TETR family tr 54.7 9.9 0.00044 17.2 3.6 30 45-74 11-42 (209)
355 1oyw_A RECQ helicase, ATP-depe 54.4 5.8 0.00026 18.7 2.4 42 65-110 463-504 (523)
356 3lsg_A Two-component response 54.3 10 0.00045 17.1 4.1 30 52-81 17-46 (103)
357 1ntc_A Protein (nitrogen regul 53.9 10 0.00045 17.1 4.3 35 44-79 55-89 (91)
358 1lva_A Selenocysteine-specific 53.8 10 0.00046 17.1 9.2 36 54-89 157-192 (258)
359 1nr3_A MTH0916, DNA-binding pr 53.6 1.4 6.4E-05 22.7 -0.8 67 52-120 3-73 (122)
360 3iyd_F RNA polymerase sigma fa 53.4 8.4 0.00037 17.6 3.0 82 54-137 477-562 (613)
361 3bru_A Regulatory protein, TET 52.2 11 0.00048 16.9 3.7 30 45-74 39-70 (222)
362 1b4a_A Arginine repressor; hel 52.1 11 0.00048 16.9 4.9 52 40-96 5-61 (149)
363 2w7n_A TRFB transcriptional re 51.9 11 0.00049 16.9 7.0 71 37-110 18-88 (101)
364 2k4j_A Putative transcriptiona 51.5 11 0.00049 16.8 4.8 47 34-80 38-91 (115)
365 2qko_A Possible transcriptiona 50.7 11 0.00051 16.7 3.4 32 45-76 37-70 (215)
366 3ez9_A Para; DNA binding, wing 50.6 7 0.00031 18.1 2.3 30 55-84 44-73 (403)
367 3g7d_A PHPD; non heme Fe(II) d 50.1 12 0.00052 16.7 3.6 37 40-76 229-265 (443)
368 3kz9_A SMCR; transcriptional r 49.4 12 0.00053 16.6 3.7 28 47-74 28-57 (206)
369 1vz0_A PARB, chromosome partit 49.4 12 0.00053 16.6 6.4 41 37-78 117-158 (230)
370 2zcm_A Biofilm operon icaabcd 49.2 10 0.00046 17.1 2.9 19 54-72 27-45 (192)
371 1u5t_B Defective in vacuolar p 48.7 5.6 0.00025 18.8 1.5 18 66-83 60-77 (169)
372 2dg7_A Putative transcriptiona 48.5 11 0.0005 16.8 3.1 20 54-73 27-46 (195)
373 1ui5_A A-factor receptor homol 48.4 12 0.00052 16.7 3.1 19 54-72 29-47 (215)
374 2ibd_A Possible transcriptiona 48.2 11 0.00049 16.8 3.0 27 47-73 25-53 (204)
375 2jzy_A Transcriptional regulat 48.0 13 0.00056 16.5 5.7 47 35-81 26-79 (112)
376 3e7l_A Transcriptional regulat 48.0 13 0.00056 16.5 3.8 33 45-78 24-56 (63)
377 3lhq_A Acrab operon repressor 47.5 12 0.00054 16.6 3.1 30 47-76 25-56 (220)
378 3cdl_A Transcriptional regulat 47.4 10 0.00044 17.1 2.6 16 69-84 132-147 (203)
379 3go5_A Multidomain protein wit 46.9 13 0.00058 16.4 4.5 51 38-88 222-279 (285)
380 3dew_A Transcriptional regulat 46.8 10 0.00045 17.1 2.6 28 48-75 20-49 (206)
381 2d6y_A Putative TETR family re 46.8 12 0.00052 16.7 2.9 21 54-74 28-48 (202)
382 2gen_A Probable transcriptiona 46.7 13 0.00057 16.4 3.1 20 54-73 27-46 (197)
383 2yve_A Transcriptional regulat 46.5 13 0.00059 16.3 3.5 18 55-72 25-42 (185)
384 3kkc_A TETR family transcripti 46.4 11 0.0005 16.8 2.8 27 47-73 23-51 (177)
385 2xdn_A HTH-type transcriptiona 45.9 14 0.0006 16.3 3.4 31 46-76 21-53 (210)
386 3mn2_A Probable ARAC family tr 45.9 14 0.0006 16.3 4.4 52 27-78 34-94 (108)
387 3dpl_C Cullin-5; ubiquitin, NE 45.7 7.4 0.00033 18.0 1.8 49 38-86 197-247 (382)
388 3b81_A Transcriptional regulat 45.7 12 0.00053 16.6 2.8 19 54-72 31-49 (203)
389 2o7t_A Transcriptional regulat 45.6 14 0.00061 16.2 3.2 28 47-74 19-48 (199)
390 1rr7_A Middle operon regulator 45.4 14 0.00061 16.2 5.0 39 48-86 86-124 (129)
391 1rzs_A Antirepressor, regulato 45.4 8.1 0.00036 17.7 1.9 19 56-74 12-30 (61)
392 3d5l_A Regulatory protein RECX 45.3 14 0.00062 16.2 5.6 94 42-142 64-170 (221)
393 3bqz_B HTH-type transcriptiona 45.1 13 0.00058 16.4 2.9 22 124-145 164-186 (194)
394 2z9m_A Response regulator YYCF 44.4 14 0.00063 16.1 4.8 47 35-81 34-87 (120)
395 2nx4_A Transcriptional regulat 44.2 14 0.00064 16.1 3.1 20 54-73 30-49 (194)
396 2qwt_A Transcriptional regulat 44.2 14 0.00064 16.1 3.5 28 48-75 25-53 (196)
397 3egq_A TETR family transcripti 44.2 14 0.00064 16.1 4.2 38 37-74 1-44 (170)
398 1rkt_A Protein YFIR; transcrip 44.0 13 0.00058 16.4 2.8 19 54-72 32-50 (205)
399 1kgs_A DRRD, DNA binding respo 43.9 15 0.00065 16.1 3.8 45 37-81 151-202 (225)
400 3ccy_A Putative TETR-family tr 43.8 15 0.00065 16.0 3.8 27 47-73 25-53 (203)
401 1vi0_A Transcriptional regulat 43.7 13 0.00059 16.3 2.8 25 49-73 21-47 (206)
402 2eh3_A Transcriptional regulat 43.7 15 0.00065 16.0 3.1 20 54-73 22-41 (179)
403 3iuv_A Uncharacterized TETR fa 43.7 15 0.00065 16.0 3.4 29 46-74 20-50 (201)
404 2hxo_A Putative TETR-family tr 43.7 15 0.00065 16.0 5.1 40 35-74 13-56 (237)
405 2opt_A Actii protein; helical 43.6 15 0.00065 16.0 3.9 40 37-76 5-48 (234)
406 2rn7_A IS629 ORFA; helix, all 43.6 6.5 0.00029 18.4 1.2 33 53-85 29-61 (108)
407 1j1v_A Chromosomal replication 43.3 15 0.00066 16.0 7.3 52 29-80 7-73 (94)
408 3ez2_A Plasmid partition prote 43.0 6 0.00027 18.6 1.0 47 52-98 38-84 (398)
409 2i10_A Putative TETR transcrip 42.8 15 0.00066 16.0 2.9 29 47-75 22-52 (202)
410 3dpj_A Transcription regulator 42.7 15 0.00066 16.0 2.9 19 54-72 28-46 (194)
411 2fq4_A Transcriptional regulat 42.6 15 0.00067 15.9 3.1 29 47-75 23-53 (192)
412 2g7s_A Transcriptional regulat 42.4 14 0.00063 16.1 2.8 20 54-73 28-47 (194)
413 3jsj_A Putative TETR-family tr 42.3 15 0.00067 15.9 2.9 20 54-73 28-47 (190)
414 2zhg_A Redox-sensitive transcr 42.3 14 0.00061 16.2 2.7 46 52-103 9-54 (154)
415 2qco_A CMER; transcriptional r 42.1 15 0.00069 15.9 3.3 27 47-73 24-52 (210)
416 3g7r_A Putative transcriptiona 42.0 15 0.00067 15.9 2.9 19 54-72 55-73 (221)
417 2w53_A Repressor, SMet; antibi 41.9 15 0.00065 16.0 2.8 28 46-73 21-50 (219)
418 3he0_A Transcriptional regulat 41.9 15 0.00065 16.0 2.8 19 54-72 31-49 (196)
419 3c2b_A Transcriptional regulat 41.8 15 0.00065 16.0 2.8 33 47-79 26-60 (221)
420 1gxq_A PHOB, phosphate regulon 41.6 16 0.0007 15.8 5.5 47 34-80 28-81 (106)
421 2hxi_A Putative transcriptiona 41.3 16 0.00071 15.8 3.0 39 37-75 28-70 (241)
422 3col_A Putative transcription 41.1 13 0.00059 16.3 2.5 20 54-73 30-49 (196)
423 3cjd_A Transcriptional regulat 41.1 15 0.00068 15.9 2.8 28 47-74 23-52 (198)
424 2p5k_A Arginine repressor; DNA 41.0 16 0.00071 15.8 4.9 46 41-90 6-56 (64)
425 2gfn_A HTH-type transcriptiona 41.0 16 0.00069 15.8 2.8 20 54-73 29-48 (209)
426 2ras_A Transcriptional regulat 40.9 15 0.00067 16.0 2.7 28 47-74 22-51 (212)
427 1opc_A OMPR, OMPRC; transcript 40.8 16 0.00072 15.7 5.1 47 35-81 29-82 (110)
428 1ys7_A Transcriptional regulat 40.8 16 0.00072 15.7 5.2 45 36-80 158-209 (233)
429 1pb6_A Hypothetical transcript 40.7 16 0.00072 15.7 3.0 27 48-74 30-58 (212)
430 2dg8_A Putative TETR-family tr 40.6 16 0.00072 15.7 2.9 20 54-73 29-48 (193)
431 1zk8_A Transcriptional regulat 40.6 14 0.00063 16.1 2.5 26 47-72 19-46 (183)
432 2zcx_A SCO7815, TETR-family tr 40.5 16 0.00073 15.7 2.9 28 47-74 34-63 (231)
433 2fd5_A Transcriptional regulat 40.4 16 0.00073 15.7 3.3 26 48-73 19-46 (180)
434 3him_A Probable transcriptiona 40.4 14 0.00062 16.1 2.5 27 47-73 27-55 (211)
435 3mvp_A TETR/ACRR transcription 40.1 16 0.00073 15.7 2.8 27 48-74 38-66 (217)
436 2g7l_A TETR-family transcripti 39.8 13 0.0006 16.3 2.3 39 37-75 18-60 (243)
437 3e3v_A Regulatory protein RECX 39.7 17 0.00074 15.6 5.3 92 44-142 23-127 (177)
438 3gzi_A Transcriptional regulat 39.7 17 0.00075 15.6 3.9 17 70-86 140-156 (218)
439 2oi8_A Putative regulatory pro 39.6 14 0.00062 16.1 2.4 26 48-73 28-55 (216)
440 3knw_A Putative transcriptiona 39.6 17 0.00075 15.6 3.1 20 54-73 34-53 (212)
441 3lwj_A Putative TETR-family tr 39.5 17 0.00075 15.6 3.1 20 54-73 32-51 (202)
442 2np5_A Transcriptional regulat 39.4 16 0.00069 15.8 2.6 20 54-73 29-48 (203)
443 3crj_A Transcription regulator 39.0 16 0.00073 15.7 2.7 19 54-72 34-52 (199)
444 3ljl_A Transcriptional regulat 38.7 15 0.00065 16.0 2.4 20 54-73 34-53 (156)
445 3frq_A Repressor protein MPHR( 38.6 11 0.00051 16.8 1.8 18 55-72 29-46 (195)
446 2zb9_A Putative transcriptiona 38.6 16 0.00073 15.7 2.6 29 46-74 33-63 (214)
447 2qen_A Walker-type ATPase; unk 38.5 17 0.00078 15.5 8.3 50 37-87 279-333 (350)
448 3kkd_A Transcriptional regulat 38.5 16 0.00073 15.7 2.6 31 46-76 45-77 (237)
449 3f1b_A TETR-like transcription 38.4 17 0.00078 15.5 3.0 20 54-73 34-53 (203)
450 2elj_A Transcriptional adapter 38.3 18 0.00078 15.5 7.0 57 28-84 26-88 (88)
451 1t56_A EThr repressor; helix-t 38.1 18 0.00079 15.5 3.2 30 46-75 34-65 (216)
452 2guh_A Putative TETR-family tr 37.7 18 0.0008 15.4 3.4 32 46-77 49-82 (214)
453 2vke_A Tetracycline repressor 37.7 17 0.00076 15.6 2.6 29 46-74 13-43 (207)
454 2iu5_A DHAS, hypothetical prot 37.7 18 0.0008 15.4 3.8 26 48-73 25-52 (195)
455 1cf7_A Protein (transcription 37.7 18 0.0008 15.4 2.8 37 52-88 28-65 (76)
456 2fbq_A Probable transcriptiona 37.7 18 0.0008 15.4 2.9 24 53-76 26-49 (235)
457 1iuy_A Cullin-3 homologue; win 37.6 6.8 0.0003 18.3 0.5 28 64-91 58-85 (92)
458 3f0c_A TETR-molecule A, transc 37.6 18 0.0008 15.4 3.1 18 54-71 31-48 (216)
459 2of7_A Putative TETR-family tr 37.5 18 0.0008 15.4 2.9 33 47-79 59-93 (260)
460 2hyt_A TETR-family transcripti 37.3 18 0.00081 15.4 3.4 17 55-71 33-49 (197)
461 2hqn_A Putative transcriptiona 37.3 18 0.00079 15.4 2.6 46 36-81 28-80 (109)
462 2rae_A Transcriptional regulat 37.2 18 0.00081 15.4 2.9 28 47-74 28-57 (207)
463 2jj7_A Hemolysin II regulatory 36.9 13 0.00056 16.4 1.8 23 54-76 27-49 (186)
464 2hyj_A Putative TETR-family tr 36.4 17 0.00077 15.5 2.5 20 54-73 32-51 (200)
465 3cwr_A Transcriptional regulat 36.3 19 0.00084 15.3 2.8 29 47-75 28-58 (208)
466 2ius_A DNA translocase FTSK; n 36.0 5.8 0.00026 18.7 0.0 53 45-98 455-507 (512)
467 1sgm_A Putative HTH-type trans 36.0 19 0.00085 15.3 3.3 22 54-75 26-47 (191)
468 3lap_A Arginine repressor; arg 35.9 19 0.00085 15.2 4.9 60 40-104 20-84 (170)
469 2id3_A Putative transcriptiona 35.6 19 0.00086 15.2 2.8 30 46-75 50-81 (225)
470 3fiw_A Putative TETR-family tr 35.5 19 0.00086 15.2 2.6 37 37-73 24-64 (211)
471 2k9l_A RNA polymerase sigma fa 35.5 19 0.00086 15.2 3.7 36 45-80 37-74 (76)
472 3bjb_A Probable transcriptiona 35.2 20 0.00088 15.2 3.4 29 47-75 33-63 (207)
473 3f2g_A Alkylmercury lyase; MER 35.0 20 0.00088 15.2 3.8 51 42-98 24-74 (220)
474 2hku_A A putative transcriptio 34.9 20 0.00088 15.1 2.9 23 54-76 39-61 (215)
475 1t98_A KICB protein, chromosom 34.7 20 0.00089 15.1 3.0 74 37-110 23-113 (287)
476 2hqr_A Putative transcriptiona 34.6 20 0.00089 15.1 3.0 46 36-81 142-194 (223)
477 3dcf_A Transcriptional regulat 34.6 20 0.00089 15.1 3.7 29 46-74 41-71 (218)
478 1z4h_A TORI, TOR inhibition pr 34.5 18 0.00082 15.4 2.3 23 55-77 11-33 (66)
479 3bhq_A Transcriptional regulat 34.1 20 0.00091 15.1 3.1 17 55-71 33-49 (211)
480 3c07_A Putative TETR-family tr 34.1 20 0.00091 15.1 3.5 29 46-74 51-81 (273)
481 3g1l_A Transcriptional regulat 33.8 21 0.00092 15.0 2.5 27 47-73 55-83 (256)
482 2rek_A Putative TETR-family tr 33.7 21 0.00092 15.0 2.6 20 55-74 36-55 (199)
483 2kfs_A Conserved hypothetical 33.7 13 0.00059 16.3 1.5 75 52-135 29-104 (148)
484 1p2f_A Response regulator; DRR 33.5 21 0.00093 15.0 5.2 45 37-81 145-194 (220)
485 3gbg_A TCP pilus virulence reg 33.1 21 0.00094 15.0 4.2 34 44-77 173-208 (276)
486 1z0x_A Transcriptional regulat 33.1 21 0.00094 15.0 2.9 38 37-74 4-46 (220)
487 3hyi_A Protein DUF199/WHIA; la 33.1 21 0.00095 14.9 9.8 50 31-80 234-286 (295)
488 2iai_A Putative transcriptiona 32.6 22 0.00096 14.9 2.7 19 54-72 50-68 (230)
489 3i71_A Ethanolamine utilizatio 32.6 22 0.00096 14.9 4.2 44 45-88 8-52 (68)
490 2pz9_A Putative regulatory pro 32.5 14 0.00063 16.1 1.5 28 47-74 41-70 (226)
491 3geu_A Intercellular adhesion 31.7 13 0.00058 16.4 1.2 11 131-141 172-182 (189)
492 3k7a_M Transcription initiatio 31.4 7.7 0.00034 17.9 0.0 27 54-80 186-212 (345)
493 3e7q_A Transcriptional regulat 31.0 18 0.00079 15.5 1.8 17 55-71 35-51 (215)
494 2vpr_A Tetracycline resistance 31.0 15 0.00066 16.0 1.4 29 46-74 14-44 (207)
495 2rjb_A Uncharacterized protein 30.9 21 0.00095 14.9 2.2 34 98-131 296-338 (455)
496 2hwv_A DNA-binding response re 30.6 23 0.001 14.7 5.7 47 35-81 41-94 (121)
497 2g3b_A Putative TETR-family tr 30.6 17 0.00076 15.6 1.7 17 69-85 127-143 (208)
498 1u3e_M HNH homing endonuclease 28.6 25 0.0011 14.5 2.5 21 56-76 137-157 (174)
499 2pmu_A Response regulator PHOP 28.5 25 0.0011 14.4 5.9 44 38-81 35-85 (110)
500 3eup_A Transcriptional regulat 28.4 19 0.00083 15.3 1.5 28 44-71 19-48 (204)
No 1
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=99.92 E-value=9.4e-24 Score=177.20 Aligned_cols=141 Identities=27% Similarity=0.529 Sum_probs=135.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11567764999999999999999999999872899989999999970889998899998658901145899999984132
Q T0617 5 QKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYI 84 (148)
Q Consensus 5 ~~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli 84 (148)
..++++++++|++.++++++...+.+.+.++||||..||.+|..|+.+|++++++||+.++++++++|++|++|+++|||
T Consensus 14 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~l~~L~~~glI 93 (162)
T 2fa5_A 14 VLLNLEQFLPYRLSVLSNRISGNIAKVYGDRYGMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFI 93 (162)
T ss_dssp CSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCE
T ss_conf 50379988999999999999999999999884989999999999996799899999999776657199999999828987
Q ss_pred HCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1256743223000001788899999999999999999985799989999999999999988
Q T0617 85 EVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKV 145 (148)
Q Consensus 85 ~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l 145 (148)
++.+++.|+|.+.|.||++|+++++++.+....+.+.++++|+++|+..|.++|+++.+|.
T Consensus 94 ~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~l~kl~~n~ 154 (162)
T 2fa5_A 94 RRETHGDDRRRSMLALSPAGRQVYETVAPLVNEMEQRLMSVFSAEEQQTLERLIDRLAKDG 154 (162)
T ss_dssp EC---------CCCEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTH
T ss_pred EECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 3046788988578888989999999999999999999993799999999999999999767
No 2
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=99.91 E-value=6.3e-24 Score=178.39 Aligned_cols=142 Identities=14% Similarity=0.284 Sum_probs=134.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11567764999999999999999999999872899989999999970889998899998658901145899999984132
Q T0617 5 QKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYI 84 (148)
Q Consensus 5 ~~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli 84 (148)
-.+.++.|++|+|.++.+.+...+.+.+ +++|||++||.+|.+|+.+||+|+++||+.++++++++|++|++|+++|||
T Consensus 18 ~~~~le~~l~yli~r~~~~~~~~~~~~l-~~~glt~~q~~iL~~L~~~~~~t~~eLa~~~~v~~~~vs~~l~~L~~~glv 96 (162)
T 3cjn_A 18 AEIGLEGYAPYLMNRIMGRYNANLRKEM-TALGLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLV 96 (162)
T ss_dssp HHHCGGGCHHHHHHHHHHHHHHHHHTTH-HHHTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 3305876699999999999999999999-885969999999999984799899999999896988999999999948987
Q ss_pred HCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 125674322300000178889999999999999999998579998999999999999998830
Q T0617 85 EVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 85 ~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
++.++|.|+|.+.+.||++|++++.++.+........++++|+++|...|..+|.++.+++++
T Consensus 97 ~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~nl~~ 159 (162)
T 3cjn_A 97 RREVDSDDQRSSRVYLTPAGRAVYDRLWPHMRASHDRMFQGITPQERQAFLATLNKMLANIRV 159 (162)
T ss_dssp EEEEC--CCSSEEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHCS
T ss_pred EEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 984027888866767898899999999999999999999389999999999999999997666
No 3
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=99.91 E-value=2e-23 Score=175.09 Aligned_cols=140 Identities=18% Similarity=0.306 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 677649999999999999999999998728999899999999708-8999889999865890114589999998413212
Q T0617 8 NIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 8 ~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
.++..++++|.++++.+...+.+.+ +++|||.+||.+|..|+.. |++|+++||+.++++++++|++|++|+++|||++
T Consensus 22 ~le~~lg~~l~rl~r~~~~~~~~~l-~~~gLt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvsr~v~~Le~~GlV~r 100 (166)
T 3deu_A 22 MLESPLGSDLARLVRIWRALIDHRL-KPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISR 100 (166)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHHHHT-TTTTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 7884899999999999999999998-876979999999999997698999999999989699899999999996988798
Q ss_pred CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56743223000001788899999999999999999985799989999999999999988309
Q T0617 87 NGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQM 148 (148)
Q Consensus 87 ~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~~ 148 (148)
.++|.|+|.+.|.||++|++++.++.+....+...++++|+++|+..|..+|.++.+|+.++
T Consensus 101 ~~d~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~nl~~l 162 (166)
T 3deu_A 101 QTCASDRRAKRIKLTEKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNIMEL 162 (166)
T ss_dssp C--------CEEEECGGGHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62068987578898988999999999999999999983899999999999999999999998
No 4
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=99.91 E-value=1.4e-23 Score=176.16 Aligned_cols=146 Identities=18% Similarity=0.325 Sum_probs=136.0
Q ss_pred CCCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 97321156----77649999999999999999999998728999899999999708899988999986589011458999
Q T0617 1 SNAMQKIN----IDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 1 ~~am~~l~----le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
||||.... ++++++|.|.++.+.+...+... .+.+|||.+||.+|..|+.+||+++++|+..++++++++|++|+
T Consensus 1 ~~~~~~~p~~~~l~~~l~~ll~~~~~~~~~~~~~~-l~~~glt~~q~~vL~~l~~~~~~t~~ela~~~~~~~~~vsr~l~ 79 (155)
T 3cdh_A 1 SNAMNDTPDDTFVSGYLLYLLAASSEEASAQFHDH-IRAQGLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVD 79 (155)
T ss_dssp ---------CCHHHHCHHHHHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99888998466688899999999999999999999-98829799999999999867997999999895989989999999
Q ss_pred HHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99984132125674322300000178889999999999999999998579998999999999999998830
Q T0617 77 KLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 77 ~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
+|+++|||++.++|.|+|.+.++||++|++++.++.+....+.+.++++++++|...|..+|.++.+++++
T Consensus 80 ~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~l~~~l~~ 150 (155)
T 3cdh_A 80 QMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVASARAHETRLLSALADTDAARIKGVLRTLLDVLDR 150 (155)
T ss_dssp HHHHTTSEEECC------CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHTTTSGGGGHHHHHHHHHHHTC-
T ss_pred HHHHCCCEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99978986871168888841001588899999999999999999999579999999999999999998573
No 5
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=99.90 E-value=1.7e-23 Score=175.49 Aligned_cols=141 Identities=19% Similarity=0.266 Sum_probs=132.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11567764999999999999999999999872899989999999970889998899998658901145899999984132
Q T0617 5 QKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYI 84 (148)
Q Consensus 5 ~~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli 84 (148)
..+++++.++|.|+.+.+.+.+.+.+.+.+++|||++||.+|..|+.+|++|+++|++.++++++++|++|++|+++|||
T Consensus 2 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~gLt~~q~~vL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~L~~~glv 81 (142)
T 2bv6_A 2 SHMNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLI 81 (142)
T ss_dssp --CCSTTCHHHHHHHHHHHHHHHHHHHTHHHHTCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 99988889999999999999999999988676989999999999980799499999999798873799999999858988
Q ss_pred HCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 125674322300000178889999999999999999998579998999999999999998830
Q T0617 85 EVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 85 ~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
++.++|.|+|.+.+.||++|++++.++.+....+... .+|+++|+..|.++|.++.+++++
T Consensus 82 ~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~~~~~~~~--~~l~~~e~~~l~~~l~kl~~~l~e 142 (142)
T 2bv6_A 82 KRERSEVDQREVFIHLTDKSETIRPELSNASDKVASA--SSLSQDEVKELNRLLGKVIHAFDE 142 (142)
T ss_dssp EEEECSSSTTCEEEEECHHHHHHHHHHTTHHHHHHHH--TTCCHHHHHHHHHHHHHHHTTC--
T ss_pred EEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 9800689888678888989999999999999999988--097999999999999999987079
No 6
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=99.90 E-value=4.6e-23 Score=172.60 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=133.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 15677649999999999999999999998728999899999999708899988999986589011458999999841321
Q T0617 6 KINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
Q Consensus 6 ~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~ 85 (148)
...++++++|+|.++.+.+...+... .+.+||+..||.+|..|+.+|++++++|++.++++++++|++|++|+++|||+
T Consensus 20 ~~~l~~~l~~ll~~~~~~~~~~~~~~-~~~~gLt~~q~~vL~~l~~~~~~s~~~La~~l~~~~~~vs~~i~~L~~~glv~ 98 (161)
T 3e6m_A 20 PGELNSFLPYLLTRITHIWSSELNQA-LASEKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAA 98 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHH-HHHHTCCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 77899899999999999999999999-98869799999999999977998999999998978879999999998389779
Q ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25674322300000178889999999999999999998579998999999999999998830
Q T0617 86 VNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 86 r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
+.++|.|+|.+.|.||++|++++.++.+....+.+.++++++++|+..|.++|.++.+|+++
T Consensus 99 r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~ls~~e~~~l~~~L~~l~~nl~d 160 (161)
T 3e6m_A 99 RSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEVLGEILKGKTD 160 (161)
T ss_dssp ECC---CCCSCEEEECHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred EEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 73368988831001688899999999999999999999579999999999999999975653
No 7
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=99.90 E-value=1.7e-22 Score=168.80 Aligned_cols=142 Identities=13% Similarity=0.150 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 15677649999999999999999999998728999899999999708899988999986589011458999999841321
Q T0617 6 KINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
Q Consensus 6 ~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~ 85 (148)
+.+.+..++|.|.++++.+...+.+. .+++||+.+||.+|..|+.+||+++++||+.+++++++++++|++|+++|||+
T Consensus 13 ~~~~~~~l~~li~~~~r~~~~~~~~~-l~~~gls~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~gli~ 91 (162)
T 3k0l_A 13 KREEEPRLSYMIARVDRIISKYLTEH-LSALEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIE 91 (162)
T ss_dssp --CCCSCHHHHHHHHHHHHHHHHHHH-HHTTTCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 30257799999999999999999999-86759899999999999877998999999998968868999999999889979
Q ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 256743223000001788899999999999999999985799989999999999999988309
Q T0617 86 VNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQM 148 (148)
Q Consensus 86 r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~~ 148 (148)
+.++|.|+|.+.++||++|++++.++.+....+...++++|+++|...|..+|.++..+++.+
T Consensus 92 r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~l~~~l~~~ 154 (162)
T 3k0l_A 92 KAPDPTHGRRILVTVTPSGLDKLNQCNQVVQQLEAQMLQGVDINLAFLIRNNLELMVKNLSTF 154 (162)
T ss_dssp EEECCSSSCCEEEEECHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTCC-
T ss_pred EEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 711798888568788988999999999999999999983899999999999999999999870
No 8
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=99.90 E-value=5.7e-23 Score=171.98 Aligned_cols=144 Identities=23% Similarity=0.332 Sum_probs=132.5
Q ss_pred CCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 97321156--7764999999999999999999999872899989999999970--8899988999986589011458999
Q T0617 1 SNAMQKIN--IDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSS--ASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 1 ~~am~~l~--le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~--~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
+|||++-+ ++..+++.+..+.+.+.+.+.+. .+++|||..||.+|.+|++ .+|+++++||+.+++++++++++|+
T Consensus 1 ~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~-l~~~gLt~~q~~vL~~L~~~~~~~it~~eLa~~~~~~~~t~sr~v~ 79 (148)
T 3jw4_A 1 SNAMKESNHLMDTPYSYLIRSIGMKLKTSADAR-LAELGLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQ 79 (148)
T ss_dssp -----------CCHHHHHHHHHHHHTTHHHHHH-HHHTTCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 975443288899999999999999999999999-8776979999999999980899997999999998978858999999
Q ss_pred HHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999841321256743223000001788899999999999999999985799989999999999999988
Q T0617 77 KLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKV 145 (148)
Q Consensus 77 ~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l 145 (148)
+|+++|||++.++|.|+|.+.+.||++|++++.++.+....+.+.++++|+++|+..|..+|.++..|+
T Consensus 80 ~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~kl~~nl 148 (148)
T 3jw4_A 80 GLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNIFLEVEESITKGLTKDEQKQLMSILIKVNRSM 148 (148)
T ss_dssp HHHHTTSBCCC--------CCCCBCHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 999888963157778888604478988999999999999999999985799999999999999999749
No 9
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=99.90 E-value=1.8e-22 Score=168.70 Aligned_cols=136 Identities=16% Similarity=0.228 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 499999999999999999999987289998999999997088-9998899998658901145899999984132125674
Q T0617 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSAS-DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 12 ~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~-~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
.+++.+.++++.+...+.+.+.+++|||.+||.+|..|+.+| |+++++||+.++++++++|++|++|+++|||+|.++|
T Consensus 19 rl~~~l~~~~~~~~~~~~~~l~~~~glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~~vs~~v~~Le~~Glv~r~~~~ 98 (160)
T 3boq_A 19 RLWLNILRLHGLVFGDLNRQLLDETGLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSA 98 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999999999999999999988709499999999999848999989999999896874899999999878997873477
Q ss_pred CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 322300000178889999999999999999998579998999999999999998830
Q T0617 91 EDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 91 ~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
.|+|.+.|.||++|++++.++.+....+...++++|+++|...|..+|.++.+++++
T Consensus 99 ~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 155 (160)
T 3boq_A 99 DDRRSFSAKLTDAGLTTFKQASEAHNRILAELLRAVSDQDMVEASAALRGILESMQT 155 (160)
T ss_dssp -----CEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 778756878898899999999999999999999679999999999999999997501
No 10
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=99.89 E-value=3.6e-22 Score=166.66 Aligned_cols=134 Identities=18% Similarity=0.264 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 49999999999999999999998728999899999999708899988999986589011458999999841321256743
Q T0617 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 12 ~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
.++..+..+.+.+.+.+.+.+ +++|||++||.+|..|+.+||+++++||+.++++++++|++|++|+++|||++.++|.
T Consensus 6 el~~~l~~~~~~~~~~~~~~l-~~~~lt~~q~~vL~~l~~~~~~t~~~la~~~~~~~~~vs~~v~~L~~~gli~r~~~~~ 84 (139)
T 3bja_A 6 ELYGNIRDVYHLLQKNLDKAI-EQYDISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPN 84 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-GGGTCCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 999999999999999999998-7859799999999999987998999999998969989999999998689878636999
Q ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 2230000017888999999999999999999857999899999999999999883
Q T0617 92 DKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVD 146 (148)
Q Consensus 92 D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~ 146 (148)
|+|.+.+.||++|++++..+.+....+.+.++++|+++|...|..+|.++.++++
T Consensus 85 D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~kl~~~l~ 139 (139)
T 3bja_A 85 DQRETLVYLTKKGEETKKQVDVQYSDFLKENCGCFTKEEEGILEDLLLKWKKHLN 139 (139)
T ss_dssp CTTCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 8884687889889999999999999999999858999999999999999998666
No 11
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=99.89 E-value=1.4e-22 Score=169.33 Aligned_cols=138 Identities=18% Similarity=0.305 Sum_probs=127.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 73211567764999999999999999999999872899989999999970889998899998658901145899999984
Q T0617 2 NAMQKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 2 ~am~~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
|+..++++++.++|.+.++++.+...+...+ ++|||++||.+|..|+.+||+++++||+.++++++++|++|++|+++
T Consensus 2 ~~~~p~~l~~~~g~ll~~~~~~~~~~~~~~~--~~glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vsr~l~~L~~~ 79 (140)
T 2nnn_A 2 SRTTPYRLDDQIGFILRQANQRYAALFANGI--GNGLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp -----CCGGGCHHHHHHHHHHHHHHHHHHHC--SSCCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 8999878887999999999999999999884--68979999999999998699599999998784736299999999709
Q ss_pred HHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 132125674322300000178889999999999999999998579998999999999999
Q T0617 82 KYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKL 141 (148)
Q Consensus 82 gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l 141 (148)
|||++.++|.|+|.+.+.||++|++++.++.+...++.+.++++|+++|+..|..+|.++
T Consensus 80 glv~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~~~~~~~~~~~~ls~~e~~~l~~~L~ki 139 (140)
T 2nnn_A 80 GLIQRSADPDDGRRLLVSLSPAGRAELEAGLAAAREINRQALAPLSLQEQETLRGLLARL 139 (140)
T ss_dssp TCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 966983369988867889898999999999999999999998289999999999999987
No 12
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=99.89 E-value=5e-22 Score=165.70 Aligned_cols=146 Identities=20% Similarity=0.260 Sum_probs=128.7
Q ss_pred CCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 973211567764---99999999999999999999987289998999999997088999889999865890114589999
Q T0617 1 SNAMQKINIDRH---ATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 1 ~~am~~l~le~~---l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
+|||+..--++. +...+..+.+.+... .+.+.+++|||++||.+|.+|+.+|++|+++||+.++++++++|++|++
T Consensus 1 ~~~mp~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~l~~~~lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~ 79 (150)
T 2rdp_A 1 SNAMPSAMNERTVAELEKLLRYIAANLKQR-GREILTNYPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDR 79 (150)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 998986436899999999999999999999-9999987798999999999999779959999999989588799999999
Q ss_pred HHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9984132125674322300000178889999999999999999998579998999999999999998830
Q T0617 78 LEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 78 L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
|+++|||++.++|.|+|.+.+.||++|++++..+.+....+...++++|+++|+..|.++|.++.+++++
T Consensus 80 L~~~g~i~r~~~~~DkR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~l~~i~~~l~~ 149 (150)
T 2rdp_A 80 MERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIEKRQRDLANVLESFSDEEIVVFERCLRKLHQEMTK 149 (150)
T ss_dssp HHHTTSEEEEECCC---CEEEEECHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9988997982047888845657898999999999999999999999689999999999999999998715
No 13
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=99.89 E-value=4.5e-22 Score=166.01 Aligned_cols=136 Identities=22% Similarity=0.275 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC--CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 7649999999999999999999998728999899999999708--89998899998658901145899999984132125
Q T0617 10 DRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSA--SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 10 e~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~--~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
|..++|.+..+++.+...+.+. .+++|||++||.+|.+|+.+ ||+++++||+.++++++++|++|++|+++|||++.
T Consensus 2 e~~~~~l~~~i~~~~~~~~~~~-~~~~gLt~~q~~iL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~Le~~gli~r~ 80 (139)
T 3eco_A 2 EFTYSYLFRMISHEMKQKADQK-LEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHH-HGGGTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 7649999999999999999999-988597999999999999559999799999999896888999999999988896516
Q ss_pred CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 67432230000017888999999999999999999857999899999999999999883
Q T0617 88 GHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVD 146 (148)
Q Consensus 88 ~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~ 146 (148)
++|.|+|.+++.||++|++++.++.+...++.+.++++++++|...|..+|.++.++++
T Consensus 81 ~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~kl~~~le 139 (139)
T 3eco_A 81 VDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ 139 (139)
T ss_dssp ECCC--CCEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 89888892024278889999999999999999999857999999999999999999449
No 14
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=99.89 E-value=8.3e-23 Score=170.91 Aligned_cols=140 Identities=20% Similarity=0.214 Sum_probs=126.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11567764999999999999999999999872899989999999970889998899998658901145899999984132
Q T0617 5 QKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYI 84 (148)
Q Consensus 5 ~~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli 84 (148)
.-+.+++.++|.|.++++.+.+.+.+. .+++|||++||.+|.+|+.+||+++++||+.++++++++|++|++|+++|||
T Consensus 13 ~~l~l~~~l~~~l~~~~~~~~~~~~~~-l~~~glt~~q~~iL~~L~~~~~~t~~~la~~~~~~~~tvs~~v~~L~~~Glv 91 (153)
T 2pex_A 13 TLLQLDNQLSFALYSANLAMHKLYRGL-LKALDLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLV 91 (153)
T ss_dssp GGGCGGGCHHHHHHHHHHHHHHHHHHH-TTTTTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 251399799999999999999999999-8776989999999999965899899999999896886999999999988998
Q ss_pred HCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 125674322300000178889999999999999999998579998999999999999998830
Q T0617 85 EVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 85 ~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
+|.++|.|+|.+.|+||++|++++.++.+...+... ..+++++|+..|.++|.++.++++.
T Consensus 92 ~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~--~~~~~~ee~~~l~~~L~~l~~~L~a 152 (153)
T 2pex_A 92 TRTRAASDERQVIIALTETGRALRSKAGAVPEQVFC--ASACSLDELRQLKQELEKLRSSLGA 152 (153)
T ss_dssp EEEC-------CEEEECHHHHHGGGGSTTHHHHHHH--HHTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 983169998868888898999999999999999999--8197999999999999999997658
No 15
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28
Probab=99.89 E-value=4.5e-22 Score=166.02 Aligned_cols=136 Identities=15% Similarity=0.243 Sum_probs=126.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6776499999999999999999999987289998999999997088--99988999986589011458999999841321
Q T0617 8 NIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
Q Consensus 8 ~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~ 85 (148)
.+++.+++.+.++.+.+...+.+. .+.+|||+.||.+|.+|..+| ++|+++||+.+++++++||++|++|+++|||+
T Consensus 3 ~m~~~l~~~l~~~~~~l~~~~~~~-~~~~~lt~~q~~vL~~l~~~~~~~it~~~La~~~~~~~~tvs~~l~~Le~~glv~ 81 (141)
T 3bro_A 3 AMSRDLGRLLKIASNQMSTRFDIF-AKKYDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH-HHTTTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 789999999999999999999999-9886989999999999998899996999999998988618999999998554534
Q ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 25674322300000178889999999999999999998579998999999999999998
Q T0617 86 VNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNK 144 (148)
Q Consensus 86 r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~ 144 (148)
+.++|.|+|.+.+.||++|++++.++.+....+.+.++++|+++|...|.++|.++.+|
T Consensus 82 r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~N 140 (141)
T 3bro_A 82 RKVSGKDSRQKCLKLTKKANKLETIILSYMDSDQSQMTSGLNKEEVVFLEKILKRMIES 140 (141)
T ss_dssp EEECSSCTTSEEEEECHHHHTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 42457888702435777799999999999999999998589999999999999999857
No 16
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=99.88 E-value=1.1e-21 Score=163.50 Aligned_cols=134 Identities=19% Similarity=0.278 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999987289998999999997088---999889999865890114589999998413212567
Q T0617 13 ATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSAS---DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 13 l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~---~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
....|.+++..+.+.+.+.+ +++|||..||.+|..|...| ++++++|++.++++++++|++|++|+++|||+|.++
T Consensus 43 ~~~lL~Rl~~~l~r~~~~~l-~~~GLt~~q~~vL~~L~~~g~~~~lt~~eLa~~l~i~~~tvsr~v~~Le~~GlV~R~~~ 121 (181)
T 2fbk_A 43 TLLLLERLHAALGREIERTY-AASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRED 121 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 99999999999999999999-88697999999999998619999939999999978687679999999987878344478
Q ss_pred CCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4322300000178889999999999999999998579998999999999999998830
Q T0617 90 SEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 90 ~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
|.|+|.+.|+||++|++++.++.+......+.++++|+++|...|..+|.++..++|+
T Consensus 122 ~~DrR~~~l~LT~~G~~l~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~le~ 179 (181)
T 2fbk_A 122 ERDRRSASIRLTPQGRALVTHLLPAHLATTQRVLAPLSAQEQRTLEELAGRMLAGLEQ 179 (181)
T ss_dssp ------CCBEECHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 6665234530388899999999999999999999479999999999999999998876
No 17
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=99.88 E-value=1.2e-21 Score=163.10 Aligned_cols=132 Identities=17% Similarity=0.309 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 99999999999999999987289998999999997088999889999865890114589999998413212567432230
Q T0617 16 QINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRT 95 (148)
Q Consensus 16 ~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~ 95 (148)
.+..+.+.+ +.+.+....++|||.+||.+|..|+.+||+++++||+.++++++++|++|++|+++|||++.+++.|+|.
T Consensus 6 ll~~i~r~~-~~~~~~~l~~~~lt~~q~~vL~~i~~~~~~t~~eLa~~~~~~~~tvs~~i~~L~~~gli~r~~~~~DrR~ 84 (138)
T 3bpv_A 6 LLSIILRSH-RVFIGRELGHLNLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRR 84 (138)
T ss_dssp HHHHHHHHH-HHHHHHHSGGGTCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCE
T ss_conf 999999999-9999999742797999999999998589989999999989698899999999996898686115899885
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 00001788899999999999999999985799989999999999999988309
Q T0617 96 YAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQM 148 (148)
Q Consensus 96 ~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~~ 148 (148)
+.++||++|.+++.++.+....+...++++|+++|+..+.++|.++.+++++|
T Consensus 85 ~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~l~ki~~~~~~~ 137 (138)
T 3bpv_A 85 YILEVTRRGEEIIPLILKVEERWEDLLFRDFTEDERKLFRKMCRRLAEEAVRM 137 (138)
T ss_dssp EEEEECHHHHHTHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78788989999999999999999999983899999999999999999999860
No 18
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=99.88 E-value=5.7e-23 Score=171.99 Aligned_cols=144 Identities=21% Similarity=0.261 Sum_probs=130.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 97321156776499999999999999999999987289998999999997088999889999865890114589999998
Q T0617 1 SNAMQKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 1 ~~am~~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
+|-+..+.+++.++|.|+.+++.+.+.+.. +.+++|||.+||.+|..|+.+||+++++||+.++++++++|++|++|++
T Consensus 2 ~~~~d~~~l~~~L~~~l~~~~~~~~~~~~~-~l~~~glt~~q~~iL~~l~~~~~~t~~eLa~~~~i~~~tisr~i~~L~~ 80 (147)
T 1z91_A 2 ENKFDHMKLENQLSFLLYASSREMTKQYKP-LLDKLNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp ------CCGGGCHHHHHHHHHHHHHTTSHH-HHTTTCCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 998653148869999999999999999999-9978598999999999988589999999999979687668899999997
Q ss_pred HHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4132125674322300000178889999999999999999998579998999999999999998830
Q T0617 81 KKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 81 ~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
+|||++.++|.|+|.+.+.||++|++++.++.+....... +.+++++|+..|...|.++.+++++
T Consensus 81 ~glv~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~~~~~~~--~~~~~~ee~~~l~~~L~~l~~~l~~ 145 (147)
T 1z91_A 81 QGLITRKRSEEDERSVLISLTEDGALLKEKAVDIPGTILG--LSKQSGEDLKQLKSALYTLLETLHQ 145 (147)
T ss_dssp HTSEECCBCSSCTTSBEEEECHHHHSGGGGTTTHHHHHHH--HTCCCTHHHHHHHHHHHHHHHHTC-
T ss_pred CCCEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 8997861388888820347898899999999999999998--8397999999999999999999874
No 19
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=99.88 E-value=1.8e-21 Score=161.93 Aligned_cols=147 Identities=17% Similarity=0.196 Sum_probs=128.1
Q ss_pred CCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 97321156776-49999999999999999999998728999899999999708899988999986589011458999999
Q T0617 1 SNAMQKINIDR-HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 1 ~~am~~l~le~-~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
+|||.+-.-+- .+...+..+.+.+...+.+. ..++|||+.||.+|..|+.+|++|+++||+.+++++|++|++|++|+
T Consensus 1 s~~m~~~~d~~~~~~~~~~~~~r~~~~~~~~~-~~~~glt~~q~~vL~~l~~~~~~t~~~La~~~~~~~~~vs~~l~~L~ 79 (152)
T 3bj6_A 1 SNAMTHETDQLYQAVQATRPLLRNITAAVERG-TLREGVTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp CCTTHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99786269999999999999999999999988-86759799999999999987998999999998969889999999999
Q ss_pred HHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 841321256743223000001788899999999999999999985799989999999999999988309
Q T0617 80 EKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQM 148 (148)
Q Consensus 80 ~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~~ 148 (148)
++|||++.++|.|+|.+.+.||++|++++..+.+........++++|+++|+..|.++|.++.++++++
T Consensus 80 ~~g~i~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~~~~~l~~l~~~~~~~ 148 (152)
T 3bj6_A 80 RAGLIERRTNPEHARSHRYWLTPRGEAIITAIRADEMAKLALFSEGFSSVELTAYHKVQLALTRFFADL 148 (152)
T ss_dssp HTTSEEEECCSSSTTSCEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCEEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 778247632677676421358888999999999999999999982899999999999999999999998
No 20
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=99.88 E-value=1.5e-21 Score=162.58 Aligned_cols=137 Identities=14% Similarity=0.231 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 76499999999999999999999987289998999999997088-99988999986589011458999999841321256
Q T0617 10 DRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSAS-DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 10 e~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~-~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
+.++++++.++++.+...+... .+++|||.++|.+|..|..+| ++++++||+.++++++++|++|++|+++|||++.+
T Consensus 8 ~~~~~~ll~~~~r~~~~~~~~~-l~~~glt~~~~~iL~~l~~~~~~~t~~~La~~l~~~~~~~s~~v~~L~~~g~I~r~~ 86 (146)
T 2fbh_A 8 KHYFGTLLAQTSRAWRAELDRR-LSHLGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH-TGGGCCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 8899999999999999999999-988698999999999999779999999999998968989999999997289878615
Q ss_pred CCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74322300000178889999999999999999998579998999999999999998830
Q T0617 89 HSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 89 ~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
+|.|+|.+.+.||++|+++++++.+....+.+.++++|+++|...+.++|.++.+++++
T Consensus 87 ~~~D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~~~~~l~~ 145 (146)
T 2fbh_A 87 VAEDRRAKHIVLTPKADVLIADIEAIAASVRNDVLTGIDESEQALCQQVLLRILANLEN 145 (146)
T ss_dssp CBTTBCSCEEEECTTHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 68898857878898899999999999999999999589999999999999999998867
No 21
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=99.88 E-value=1.5e-21 Score=162.49 Aligned_cols=134 Identities=21% Similarity=0.323 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999999999987289998999999997088999889999865890114589999998413212567432
Q T0617 13 ATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 13 l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
+-..+..+++.+.. ..+...+++|||.+||.+|.+|+.+||+++++||+.+++++|++|++|++|+++|||++.++|.|
T Consensus 3 i~~~i~~i~r~~~~-~~~~~~~~~~Lt~~q~~vL~~l~~~~~~s~~~la~~l~i~~~~vs~~v~~L~~~glI~r~~~~~D 81 (144)
T 1lj9_A 3 ILREIGMIARALDS-ISNIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASN 81 (144)
T ss_dssp HHHHHHHHHHHHHH-HHHHHTGGGTCTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf 99999999999999-99999877698999999999998389979999999989788589999999998899630679999
Q ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2300000178889999999999999999998579998999999999999998830
Q T0617 93 KRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 93 ~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
+|.+.++||++|++++.++.+....+...++++|+++|+..|.++|.++.+++++
T Consensus 82 ~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~l~~l~~~l~~ 136 (144)
T 1lj9_A 82 KKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSE 136 (144)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8911447898999999999999999999998589999999999999999998999
No 22
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1}
Probab=99.87 E-value=4.2e-21 Score=159.56 Aligned_cols=139 Identities=15% Similarity=0.207 Sum_probs=128.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 11567764999999999999999999999872899989999999970-88999889999865890114589999998413
Q T0617 5 QKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEEKKY 83 (148)
Q Consensus 5 ~~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~-~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gl 83 (148)
+...+++.++|.|.++++.+...+... .+++||++.||.+|..+.. .+|+++++|++.++++++++|++|++|+++||
T Consensus 5 e~~~l~~~l~~ll~~~~r~~~~~~~~~-l~~~glt~~q~~iL~~l~~~~~~~t~~~la~~l~~~~~tvs~~l~~L~~~gl 83 (150)
T 3fm5_A 5 ESQALSDDIGFLLSRVGGMVLGAVNKA-LVPTGLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGL 83 (150)
T ss_dssp SCCCGGGCHHHHHHHHHHHHHHHHHHH-HGGGTCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 502177789999999999999999999-9884989999999999998598989999999978877778899999998698
Q ss_pred HHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2125674322300000178889999999999999999998579998999999999999998
Q T0617 84 IEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNK 144 (148)
Q Consensus 84 i~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~ 144 (148)
|++.++|.|+|.+.++||++|++++.++.+....+...++++|+++|...|..+|.++...
T Consensus 84 i~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~ls~~e~~~l~~~L~~i~~~ 144 (150)
T 3fm5_A 84 VVRTLDPSDRRNKLIAATEEGRRLRDDAKARVDAAHGRYFEGIPDTVVNQMRDTLQSIAFP 144 (150)
T ss_dssp EEC-----------CEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHCC
T ss_pred EEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 5651488767746878898899999999999999999999679999999999999998387
No 23
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=99.87 E-value=3.5e-21 Score=160.05 Aligned_cols=135 Identities=19% Similarity=0.227 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 49999999999999999999998728999899999999708899988999986589011458999999841321256743
Q T0617 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 12 ~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
.+.+.+..+.+.+...+... .+++||+..||.+|..|+.+||+|+++||+.++++++++|+++++|+++|||++.++|.
T Consensus 10 ~i~~~l~~l~~~~~~~~~~~-~~~~glt~~q~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~glv~r~~~~~ 88 (155)
T 1s3j_A 10 DIQLSLQALFQKIQPEMLES-MEKQGVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTK 88 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999999-87859899999999999986997999999998969989999999998624255202336
Q ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22300000178889999999999999999998579998999999999999998830
Q T0617 92 DKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 92 D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
|+|.+.|.||++|++++.++......+...++++|+++|+..|..+|.++...+++
T Consensus 89 D~R~~~v~LT~~G~~~~~~~~~~~~~~~~~~~~~ls~ee~~~l~~~l~kl~~~~~~ 144 (155)
T 1s3j_A 89 DRRVIDLSLTDEGDIKFEEVLAGRKAIMARYLSFLTEEEMLQAAHITAKLAQAAET 144 (155)
T ss_dssp CTTSEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 77520002489899999999999999999998389999999999999999999987
No 24
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=99.87 E-value=1.2e-21 Score=163.11 Aligned_cols=137 Identities=17% Similarity=0.358 Sum_probs=126.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11567764999999999999999999999872899989999999970889998899998658901145899999984132
Q T0617 5 QKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYI 84 (148)
Q Consensus 5 ~~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli 84 (148)
..+.|++.++|.++.+.+.+...+.. ..+++|||++||.+|..|+..||+++++|++.++++++++|+++++|+++|||
T Consensus 2 ~~~~L~~~l~~~l~~~~r~~~~~~~~-~l~~~glt~~q~~iL~~L~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glI 80 (140)
T 3hsr_A 2 SHMYLSKQLCFLFYVSSKEIIKKYTN-YLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYV 80 (140)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH-HHGGGTCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 97858769999999999999999999-99885989999999999987799899999999896886899999999817956
Q ss_pred HCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 125674322300000178889999999999999999998579998999999999999998
Q T0617 85 EVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNK 144 (148)
Q Consensus 85 ~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~ 144 (148)
++.+++.|+|.+.+.||++|+++++++.+....+.+.+ +++++|+..+...|.++..+
T Consensus 81 ~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~--~l~~~e~~~l~~~L~~li~~ 138 (140)
T 3hsr_A 81 VRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEF--NISEREASDIINNLRNFVSK 138 (140)
T ss_dssp EEEC-------CEEEECHHHHHTHHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_conf 98543789875788889889999999999999999877--98999999999999999987
No 25
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A
Probab=99.87 E-value=7.3e-21 Score=157.96 Aligned_cols=135 Identities=14% Similarity=0.271 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 776499999999999999999999-9872899989999999970889998899998658901145899999984132125
Q T0617 9 IDRHATAQINMLANKLMLKSSTAY-TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 9 le~~l~~~l~~l~~~~~~~~~~~~-~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
.+..+...+..+.+.+...+...+ .+++|||..||.+|..|+.+|++++++||+.++++++++|++|++|+++|||+|.
T Consensus 5 ~~~dl~~~l~~~~~~~~~~~~~~~~~~~~~lt~~q~~iL~~i~~~~~~t~~eLa~~l~i~~~~vsr~l~~L~~~g~v~r~ 84 (142)
T 3ech_A 5 VNPDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEC
T ss_conf 98579999999999999999999861268989999999999998799899999999793572699999999996132000
Q ss_pred CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 67432230000017888999999999999999999857999899999999999999
Q T0617 88 GHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRN 143 (148)
Q Consensus 88 ~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~ 143 (148)
++|.|+|.+.+.||++|++++.++......+.+.++++++++|...|..+|.++..
T Consensus 85 ~~~~D~R~~~i~lT~~G~~~~~~~~~~~~~~~~~~~~~ls~~e~~~l~~~L~kl~~ 140 (142)
T 3ech_A 85 RNPSDQRSFQLFLTDEGLAIHLHAELIMSRVHDELFAPLTPVEQATLVHLLDQCLA 140 (142)
T ss_dssp ---------CCEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 16776741365788889999999999999999999847999999999999999997
No 26
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=99.86 E-value=1.1e-20 Score=156.89 Aligned_cols=134 Identities=14% Similarity=0.243 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999999999987289998999999997088999889999865890114589999998413212567432
Q T0617 13 ATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 13 l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
+...+.++.+.+.+.+...+ .++|+|..||.+|..+++ +|+|+++||+.++++++++|++|++|+++|||.+.++|.|
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~-~~~~lt~~q~~vL~~l~~-~~~t~~~La~~l~i~~~~vsr~v~~L~~~g~i~r~~~~~D 88 (146)
T 2gxg_A 11 IMSTIAKIYRAMSRELNRRL-GELNLSYLDFLVLRATSD-GPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDRED 88 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHTT-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 99999999999999999988-776989999999999985-9969999999989798699999999987899798677888
Q ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23000001788899999999999999999985799989999999999999988309
Q T0617 93 KRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQM 148 (148)
Q Consensus 93 ~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~~ 148 (148)
+|.+.++||++|++++..+.+....+...++++++++|...|...|.++.++++++
T Consensus 89 ~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~l~~l~~~le~~ 144 (146)
T 2gxg_A 89 RRKILIEITEKGLETFNKGIEIYKKLANEVTGDLSEDEVILVLDKISKILKRIEEI 144 (146)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87100116898999999999999999999984899999999999999999999987
No 27
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=99.86 E-value=4.3e-21 Score=159.46 Aligned_cols=135 Identities=18% Similarity=0.311 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 49999999999999999999998728999899999999708899988999986589011458999999841321256743
Q T0617 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 12 ~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
.+...+..+...+...+.. +.++|||+.+||.+|..|+.+|++++++||+.++++++++|++|++|+++|||++.++|.
T Consensus 6 ~~~~l~r~l~~~~~~~~~~-~~~~~gL~~~q~~iL~~i~~~~~~t~~ela~~~~i~~~~vs~~i~~L~~~gli~~~~~~~ 84 (145)
T 2a61_A 6 PFERILREICFMVKVEGRK-VLRDFGITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHT-THHHHTCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9999999999999999999-998859899999999999876998999999882989889999999997246866423478
Q ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22300000178889999999999999999998579998999999999999998830
Q T0617 92 DKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 92 D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
|+|.+.++||++|++++.++.+....+...++++|+++|...+..+|.++..++++
T Consensus 85 DkR~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~l~~l~~~le~ 140 (145)
T 2a61_A 85 DRRAYFLVITRKGEEVIEKVIERRENFIEKITSDLGKEKSSKILDYLKELKGVMER 140 (145)
T ss_dssp EEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98857878898999999999999999999998579999999999999999999998
No 28
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=99.86 E-value=1.6e-20 Score=155.76 Aligned_cols=131 Identities=19% Similarity=0.272 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 99999999999999999987289998999999997088999889999865890114589999998413212567432230
Q T0617 16 QINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRT 95 (148)
Q Consensus 16 ~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~ 95 (148)
.+++..+.+.+.+. ...+.+||+.+||.+|..|+.+|++++++||+.++++++++|+.|++|+++|||++.++|.|+|.
T Consensus 8 ~l~~~~~~~~~~~~-~~~~~~~Ls~~q~~iL~~l~~~~~~t~~ela~~l~i~~~~vs~~v~~L~~~glv~r~~~~~D~R~ 86 (145)
T 3g3z_A 8 QLGTRINLICNVFD-KWIGQQDLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRK 86 (145)
T ss_dssp HHHHHHHHHHHHHH-HHHHTTTCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEECCCCCCH
T ss_conf 99999999999999-99988598999999999999869949999999989789899999999983100200026655640
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0000178889999999999999999998579998999999999999998830
Q T0617 96 YAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 96 ~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
+.+.||++|++++..+.+....+...+++++++++...|...|+++..++++
T Consensus 87 ~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~ 138 (145)
T 3g3z_A 87 RLLSLTETGKAYAAPLTESAQEFSDKVFATFGDKRTTRLFADLDALAEVMEK 138 (145)
T ss_dssp SCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 3211388899999999999999999998469999999999999999999999
No 29
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=99.86 E-value=7e-21 Score=158.09 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=122.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 21156776499999999999999999999987289998999999997088999889999865890114589999998413
Q T0617 4 MQKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKY 83 (148)
Q Consensus 4 m~~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gl 83 (148)
|++++-...+...+..+.+.+...+...+.+.+|||..||.+|..|++ +|+++++||+.+++++|++|++|++|+++||
T Consensus 1 M~~~d~~~~l~~~i~~~~~~~~~~~~~~l~~~~~lt~~q~~iL~~i~~-~~~t~~~la~~~~~~~~tvs~~i~~L~~~g~ 79 (144)
T 3f3x_A 1 MQKIDEKLQLMNTIAKIYRGSIKEFNNRLGKLMNLSYLDFSILKATSE-EPRSMVYLANRYFVTQSAITAAVDKLEAKGL 79 (144)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 986539999999999999999999999888765999999999999992-9919999999979788689999999996788
Q ss_pred HHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHH
Q ss_conf 212567432230000017888999999999999999999857999899--99999999999988
Q T0617 84 IEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEK--DQLFILLKKLRNKV 145 (148)
Q Consensus 84 i~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~--~~l~~~L~~l~~~l 145 (148)
|++.++|.|+|.+.++||++|++++.++.+....+.+.++++++++|. ..|..++.++..+.
T Consensus 80 I~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~L~~ll~~l~~~~ 143 (144)
T 3f3x_A 80 VRRIRDSKDRRIVIVEITPKGRQVLLEANEVLRNLVNEMLSDVENVEELLEGLNKILSRIGSSK 143 (144)
T ss_dssp EEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHC----
T ss_pred EEECCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 0131355455301213389899999999999999999988599999999999999999987479
No 30
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=99.85 E-value=2e-20 Score=155.02 Aligned_cols=136 Identities=18% Similarity=0.291 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 49999999999999999999998-72899989999999970889998899998658901145899999984132125674
Q T0617 12 HATAQINMLANKLMLKSSTAYTQ-KFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 12 ~l~~~l~~l~~~~~~~~~~~~~~-~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
.+...+..+.+.+.....+.+.. ..|||.+||.+|.+|+.+||+++++||+.++++++++|++|++|+++|||++.++|
T Consensus 16 ~l~~~l~~~~r~~~~~~~~~~~~~~~~lt~~q~~vL~~l~~~~~~~~~ela~~l~i~~~tvs~~l~~L~~~GlV~r~~~~ 95 (168)
T 2nyx_A 16 VITDALLTASRLLVAISAHSIAQVDENITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHP 95 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEEECC
T ss_conf 99999999999999999999887469989999999999987799899999999896998999999999621036764315
Q ss_pred CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 322300000178889999999999999999998579998999999999999998830
Q T0617 91 EDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 91 ~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
.|+|.+.|.||++|++++.++.+....+...++++|+++|+..|.++|.++.+.+++
T Consensus 96 ~DrR~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~~~e 152 (168)
T 2nyx_A 96 TSRRELLAALTKRGRDVVRQVTEHRRTEIARIVEQMAPAERHGLVRALTAFTEAGGE 152 (168)
T ss_dssp SCSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 667425888898999999999999999999999389999999999999999986679
No 31
>3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89}
Probab=99.85 E-value=1.1e-20 Score=156.71 Aligned_cols=133 Identities=20% Similarity=0.290 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 49999999999999999999998728999899999999708899988999986589011458999999841321256743
Q T0617 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 12 ~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
.+.++++.+. +.+.+.+.+++|||.+||.+|..|+.+||+++++||+.++++++++|++|++|+++|||++.++|.
T Consensus 7 ~ll~~~~~~~----~~~~~~~~~~~glt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~v~~L~~~G~i~r~~~~~ 82 (142)
T 3bdd_A 7 DLLYRLKVAD----ETISNLFEKQLGISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPD 82 (142)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 9999999999----999999998829699999999999887998999999998979879999999999789978711887
Q ss_pred CCCEECCCCCHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 22300000178889999999999999-9999985799989999999999999988309
Q T0617 92 DKRTYAINLTEMGQELYEVASDFAIE-REKQLLEEFEEAEKDQLFILLKKLRNKVDQM 148 (148)
Q Consensus 92 D~R~~~l~LT~~G~~~~~~~~~~~~~-~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~~ 148 (148)
|+|.+.+++|++|++++.+....... ..+.++++|+++|...+.++|.++.++++++
T Consensus 83 D~R~~~i~lT~~G~~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~~ 140 (142)
T 3bdd_A 83 NQREVLVWPTEQAREALITNPSAHHQAIKTSMNQILTVEESEQFLATLDKLLIGLQNL 140 (142)
T ss_dssp STTCEEEEECHHHHHHHTTSCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6772122068989999999999999999999980699999999999999999977627
No 32
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=99.84 E-value=1e-19 Score=150.29 Aligned_cols=125 Identities=17% Similarity=0.270 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC--CCCCCCCEECCCC
Q ss_conf 99999999999872899989999999970889998899998658901145899999984132125--6743223000001
Q T0617 23 KLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN--GHSEDKRTYAINL 100 (148)
Q Consensus 23 ~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~--~~~~D~R~~~l~L 100 (148)
+............+|||.+||.+|..|+.+||+++++||+.++++++++|++|++|+++|||+|. ++|.|+|.+.|.|
T Consensus 24 r~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~tvs~~l~~L~~~glv~r~~~~~~~D~R~~~l~L 103 (154)
T 2qww_A 24 RISAGYADQNAASLGLTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKL 103 (154)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEE
T ss_conf 99999999999876989999999999997799899999999788800478999999878975886204556665368888
Q ss_pred CHHHHHHHHHHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7888999999999--9999999998579998999999999999998830
Q T0617 101 TEMGQELYEVASD--FAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 101 T~~G~~~~~~~~~--~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
|++|++++.++.+ ........++++++++|+..|.+++.++...+++
T Consensus 104 T~kG~~~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~l~ki~~~l~k 152 (154)
T 2qww_A 104 SKKGEDLSKRSTANAFMYKAMMKVFENLTENEIEELIRLNKKVETLLKK 152 (154)
T ss_dssp CHHHHHHHHHHHSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9889999999999989999999999779999999999999999999974
No 33
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=99.83 E-value=2.4e-20 Score=154.52 Aligned_cols=133 Identities=18% Similarity=0.212 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999999872899989999999970889998899998658901145899999984132125674322
Q T0617 14 TAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 14 ~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
...+..+...+.+.+... ....|||..||.+|..|+.+|++|+++||+.+++++|++|++|++|+++|||+|.++|.|+
T Consensus 19 ~~~l~~l~~~~~~~~~~~-~~~~~lt~~q~~iL~~l~~~~~~t~~ela~~~~i~~~~vs~~i~~L~~~g~i~r~~~~~D~ 97 (154)
T 2eth_A 19 FKTLFSLVMRFSSYLPSN-EEISDMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp HHHHHHHHHHHHTTSCCC-HHHHHSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred HHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999999999999876-6556999999999999998699599999999897987999999999988891300366656
Q ss_pred CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 300000178889999999999999999998579998999999999999998830
Q T0617 94 RTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 94 R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
|.+.++||++|++++.++.+....+...++++++++|...|...|.++.+++++
T Consensus 98 R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~l~~l~~~l~~ 151 (154)
T 2eth_A 98 RTYRVVLTEKGKEIFGEILSNFESLLKSVLEKFSEEDFKVVSEGFNRMVEALSR 151 (154)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 411101588899999999999999999999589999999999999999999977
No 34
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=99.83 E-value=3.9e-20 Score=153.08 Aligned_cols=129 Identities=21% Similarity=0.310 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 49999999999999999999998728999899999999708899988999986589011458999999841321256743
Q T0617 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 12 ~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
.+++.+..+.+.+ ....+.+.+++|||.+||.+|..|+.+|++++++||+.++++++++|++|++|+++|||++.++|.
T Consensus 7 ~lg~ll~~~~~~~-~~~~~~~l~~~gLt~~q~~iL~~l~~~~~~t~~~La~~~~~~~~tvs~~v~~L~~~g~i~r~~~~~ 85 (138)
T 1jgs_A 7 PLGRLIHMVNQKK-DRLLNEYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPN 85 (138)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHHTTTTSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTT
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9999999999999-999999987859799999999999877998999999998978868999999998689879844688
Q ss_pred CCCEECCCCCHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 2230000017888999999999999-9999998579998999999999999
Q T0617 92 DKRTYAINLTEMGQELYEVASDFAI-EREKQLLEEFEEAEKDQLFILLKKL 141 (148)
Q Consensus 92 D~R~~~l~LT~~G~~~~~~~~~~~~-~~~~~~~~~l~~ee~~~l~~~L~~l 141 (148)
|+|.+.+.||++|++++.++.+... .+.+.++++|+++|...|..+|+++
T Consensus 86 D~R~~~i~lT~~G~~~~~~~~~~~~~~~~~~~~~~l~~eE~~~l~~~L~kl 136 (138)
T 1jgs_A 86 DKRGVLVKLTTGGAAICEQCHQLVGQDLHQELTKNLTADEVATLEYLLKKV 136 (138)
T ss_dssp CSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHTT
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 887568888988999999999999999999998279999999999999976
No 35
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=99.83 E-value=2.7e-20 Score=154.12 Aligned_cols=132 Identities=20% Similarity=0.297 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 64999999999999999999999872899989999999970889998899998658901145899999984132125674
Q T0617 11 RHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 11 ~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
..+++.+.++.+.+...+.+. .+++|||.+||.+|..|+.+|++++++||+.++++++++|+++++|+++|||++.+++
T Consensus 8 ~~l~~~l~~~~~~~~~~~~~~-l~~~gLt~~q~~vL~~l~~~~~~~~~ela~~l~~~~~~vs~~i~~L~~~Glv~r~~~~ 86 (142)
T 2fbi_A 8 PSLTLTLLQAREAAMSFFRPS-LNQHGLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAP 86 (142)
T ss_dssp CCHHHHHHHHHHHHHTTTHHH-HHHHTCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 479999999999999999999-9883989999999999998799899999999798988999999999978997983158
Q ss_pred CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 32230000017888999999999999999999857999899999999999999
Q T0617 91 EDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRN 143 (148)
Q Consensus 91 ~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~ 143 (148)
.|+|.+.++||++|++++.++.+....+.+.++++|+++|...|.++|.++.+
T Consensus 87 ~D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~l~~ 139 (142)
T 2fbi_A 87 KDQRRVYVNLTEKGQQCFVSMSGDMEKNYQRIQERFGEEKLAQLLELLNELKK 139 (142)
T ss_dssp TEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 88886788889899999999999999999999946999999999999999970
No 36
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=99.80 E-value=7.4e-19 Score=144.59 Aligned_cols=137 Identities=13% Similarity=0.160 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 677649999999999999999999998728999899999999708-8999889999865890114589999998413212
Q T0617 8 NIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 8 ~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
+.+..+++++....+++.+.+.+. ...+|+|.+||.+|..|+.. |++|+++||+.++++++++|++|++|+++|||+|
T Consensus 4 ~~~~~l~~~l~~~~~~l~~~~~~~-~~~~~lt~~q~~vL~~L~~~~~~~t~~ela~~l~i~~~tvs~~i~~L~~~glv~r 82 (147)
T 2hr3_A 4 NQDLQLAAHLRSQVTTLTRRLRRE-AQADPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVR 82 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 679999999999999999999988-6575989999999999996699979999999989798689999999985798798
Q ss_pred CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 567432230000017888999999999999999-999857999899999999999999883
Q T0617 87 NGHSEDKRTYAINLTEMGQELYEVASDFAIERE-KQLLEEFEEAEKDQLFILLKKLRNKVD 146 (148)
Q Consensus 87 ~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~-~~~~~~l~~ee~~~l~~~L~~l~~~l~ 146 (148)
.++|.|+|.+.+.||++|++++.++.+....+. +.+++.+++++...+..++..+. ++.
T Consensus 83 ~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~-~l~ 142 (147)
T 2hr3_A 83 HADPQDGRRTRVSLSSEGRRNLYGNRAKREEWLVRAMHACLDESERALLAAAGPLLT-RLA 142 (147)
T ss_dssp EC------CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHH
T ss_pred EECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHH
T ss_conf 325889984575789889999999999999999999882599999999999999999-974
No 37
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=99.74 E-value=5e-18 Score=139.07 Aligned_cols=124 Identities=16% Similarity=0.236 Sum_probs=107.3
Q ss_pred CCCHHHHHHH--HHHHHHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 1567764999--99999999999999999---987289998999999997088999889999865890114589999998
Q T0617 6 KINIDRHATA--QINMLANKLMLKSSTAY---TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 6 ~l~le~~l~~--~l~~l~~~~~~~~~~~~---~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
.+.+..++.| ++.++++.+++.+.+.+ .++||||..||.+|.+|+..|++|+++||+.++++++++|++|++|++
T Consensus 9 ~~~~ke~~~~~~~~~~l~~~l~~~i~~~~~~~lk~~~Lt~~q~~iL~~l~~~~~~t~~ela~~~~~~~stvs~~i~~L~~ 88 (207)
T 2fxa_A 9 PYDVKEALVFTQKMAQLSKALWKSIEKDWQQWLKPYDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEE 88 (207)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 84427899999999999999999999999987523599999999999999779989999999988887279999999997
Q ss_pred HHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 4132125674322300000178889999999999999999998579998
Q T0617 81 KKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEA 129 (148)
Q Consensus 81 ~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~e 129 (148)
+|||.+.+++.|+|.+.+.||++|++++.++.+....+...++.++++-
T Consensus 89 ~glv~r~~~~~DkR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~g~~p~ 137 (207)
T 2fxa_A 89 RGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEFDPTRNAVFKGSQPL 137 (207)
T ss_dssp HTSEEEECC------CEEEECHHHHHHHHHHHHHCCGGGCHHHHHTHHH
T ss_pred CCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 8988983088877524777898899999999999999999998057727
No 38
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=99.68 E-value=4.4e-16 Score=126.09 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999987289998999999997088--9998899998658901145899999984132125674322
Q T0617 16 QINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 16 ~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
.+..+... ..+..+.+.+++|||..||.+|..|+.++ ++++++||+.++++++++|++|++|+++|||+|.++|.|+
T Consensus 14 ~l~~~~~~-~~~~~~~l~~~~~ls~~q~~iL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~i~~Le~~gli~r~~~~~D~ 92 (127)
T 2frh_A 14 ELLSMVTY-ADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDE 92 (127)
T ss_dssp HHHHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSS
T ss_pred HHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCCCC
T ss_conf 99999999-99999999988495999999999998289998779999999797885899999999721217874158898
Q ss_pred CEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3000001788899999999999999999985
Q T0617 94 RTYAINLTEMGQELYEVASDFAIEREKQLLE 124 (148)
Q Consensus 94 R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~ 124 (148)
|.+.+.||++|+++++++.+...++....++
T Consensus 93 R~~~i~lT~~G~~~~~~~~~~~~~~~~~~~~ 123 (127)
T 2frh_A 93 RTVLILVNAQQRKKIESLLSRVNKRITEANN 123 (127)
T ss_dssp CCCEEECCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8589898988999999999999999986446
No 39
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=99.60 E-value=5.8e-15 Score=118.66 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCH
Q ss_conf 99999999987289998999999997088--9998899998658901145899999984132125674322300000178
Q T0617 25 MLKSSTAYTQKFGIGMTEWRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTE 102 (148)
Q Consensus 25 ~~~~~~~~~~~~glt~~q~~iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~ 102 (148)
+..+.+.+.+++|||..||.+|..|+.++ ++++++||+.+++++|++|++|++|+++|||+|.+++.|+|.+.+.||+
T Consensus 19 ~~~~~~~l~~~~~Lt~~q~~vL~~l~~~~~~~~t~~ela~~l~~~~s~vs~~l~~Le~~g~I~r~~~~~D~R~~~i~lTe 98 (250)
T 1p4x_A 19 MFRFKKKVKPEVDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISE 98 (250)
T ss_dssp HHHHHHHHTTTCSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECH
T ss_conf 99999998987799999999999998479999789999999688832499999999988998867899899827999898
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999999999999999999
Q T0617 103 MGQELYEVASDFAIEREKQL 122 (148)
Q Consensus 103 ~G~~~~~~~~~~~~~~~~~~ 122 (148)
+|++.++++.....++...+
T Consensus 99 ~g~~~i~~~~~~~~~~i~~~ 118 (250)
T 1p4x_A 99 EQREKIAERVTLFDQIIKQF 118 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999854
No 40
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=99.59 E-value=1.3e-14 Score=116.29 Aligned_cols=90 Identities=13% Similarity=0.253 Sum_probs=81.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHH
Q ss_conf 99999987289998999999997088--9998899998658901145899999984132125674322300000178889
Q T0617 28 SSTAYTQKFGIGMTEWRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQ 105 (148)
Q Consensus 28 ~~~~~~~~~glt~~q~~iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~ 105 (148)
+.+.+.+++|||..||.||.+|+.++ ++++++||+.+++++|++|++|++|+++|||+|.+++.|+|.+.+.||++|+
T Consensus 146 ~~~~l~k~~~Ls~~e~~vL~~L~~~~~~~i~~~~la~~l~~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~lT~~G~ 225 (250)
T 1p4x_A 146 FKNIIKKHLTLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQ 225 (250)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHH
T ss_conf 99998641698999999999998599996769999999788851599999999988998972799888705989898899
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q T0617 106 ELYEVASDFAIE 117 (148)
Q Consensus 106 ~~~~~~~~~~~~ 117 (148)
+++.++.+...+
T Consensus 226 ~~~~~~~~~~~~ 237 (250)
T 1p4x_A 226 DHAEQLLAQVNQ 237 (250)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 41
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=99.57 E-value=6.4e-14 Score=111.71 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 999999999999999998728999899999999708-8999889999865890114589999998413212567432230
Q T0617 17 INMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRT 95 (148)
Q Consensus 17 l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~ 95 (148)
|....+.+...+.+. .+.+|++.+++.++..|..+ +|+|++|||+.+++++++||+.|++|+++|||++..+++|+|.
T Consensus 4 l~~~~~~~~e~~~~~-~~~~Gl~~~~~~v~~~L~~~~~p~t~~eLa~~l~isks~vs~~l~~L~~~GlV~r~~~~~drr~ 82 (152)
T 1ku9_A 4 MEEAKKLIIELFSEL-AKIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKN 82 (152)
T ss_dssp HHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSC
T ss_pred HHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCE
T ss_conf 999999999999999-9981979999999999997698969999997848665149999999998899898528988874
Q ss_pred ECCCCCHHHH-----HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 0000178889-----9999999999999999985799989999999999999988
Q T0617 96 YAINLTEMGQ-----ELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKV 145 (148)
Q Consensus 96 ~~l~LT~~G~-----~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l 145 (148)
+.+.+|++|. +..........+..+.+++.+++++...+...+.++....
T Consensus 83 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~~~ 137 (152)
T 1ku9_A 83 YYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEEKCNEEEKEFIKQKIKGIERMK 137 (152)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHTHHH
T ss_pred EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6877786555137999999998899999999885599999999999999999999
No 42
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=99.33 E-value=1.2e-12 Score=103.19 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999708899988999986589011458999999841321256743223000001788899999999999999
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIER 118 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~ 118 (148)
++.++.||..|..+|++++++||+.++++++++|+.+++|++.|||++.+++.|+|.+.+.|||+|++.+.+........
T Consensus 15 ~p~r~~Il~~L~~~~~~~~~eLa~~l~is~~~vs~~l~~L~~~GlV~~~~~~~d~r~~~~~LT~~G~~~~~~~~~~l~~~ 94 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKAV 94 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999997267896199999988526874419999864212488887676675420226899999999999999999
Q ss_pred HH
Q ss_conf 99
Q T0617 119 EK 120 (148)
Q Consensus 119 ~~ 120 (148)
.+
T Consensus 95 ~~ 96 (100)
T 1ub9_A 95 ID 96 (100)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
No 43
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=99.28 E-value=5.4e-12 Score=98.86 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=85.6
Q ss_pred HHHHHHCCCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 9999872899989999999970-889998899998658901145899999984132125674322300000178889999
Q T0617 30 TAYTQKFGIGMTEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 30 ~~~~~~~glt~~q~~iL~~l~~-~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
+.+...|||+..+|.+|..|.. .+|+|+++||+.++++++++++.+++|+++|||++.+++.|+|.+.++++..|.++.
T Consensus 11 ~~~~~~~gLs~~~~~iL~~L~~~~~~lt~~ela~~l~i~~~tv~~~l~~L~~~GlV~r~~~~~d~rgr~~~l~~~~~~~~ 90 (109)
T 2d1h_A 11 DEIRCCYKITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNIL 90 (109)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEECCHHHH
T ss_conf 99998779599999999999984969899999999788723499999999987986362687789873478751789999
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999857
Q T0617 109 EVASDFAIEREKQLLEE 125 (148)
Q Consensus 109 ~~~~~~~~~~~~~~~~~ 125 (148)
+.+........+.+...
T Consensus 91 ~~i~~~~~~~~~k~~~s 107 (109)
T 2d1h_A 91 EKIRNDLLNCAKRMELA 107 (109)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999875
No 44
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=99.25 E-value=2.6e-11 Score=94.27 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=82.9
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHH
Q ss_conf 98728999899999999708899988999986589011458999999841321256743223000001788899999999
Q T0617 33 TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 112 (148)
.+.+|||+.||.|+..|..+|++++++||+.+++++++|++.+++|+++|||+|..++.|+|...+..++ +.+++.++.
T Consensus 13 L~~~glt~~e~~v~~~L~~~~~~t~~eia~~~~~~~~~v~~~l~~L~~~Glv~r~~~~~~~~~~~~~~~~-~~e~l~~i~ 91 (109)
T 1sfx_A 13 LEKLSFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEK-PEKVLKEFK 91 (109)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECC-HHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC-CHHHHHHHH
T ss_conf 9985999999999999980488879999999756701899999999959997987425788655433668-001689999
Q ss_pred HHHHHHHHHHHHCCCH
Q ss_conf 9999999999857999
Q T0617 113 DFAIEREKQLLEEFEE 128 (148)
Q Consensus 113 ~~~~~~~~~~~~~l~~ 128 (148)
.........+...|++
T Consensus 92 ~~i~~~l~elek~lsD 107 (109)
T 1sfx_A 92 SSILGEIERIEKMFTD 107 (109)
T ss_dssp HHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999987424
No 45
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=99.07 E-value=2.4e-10 Score=87.91 Aligned_cols=82 Identities=22% Similarity=0.281 Sum_probs=70.5
Q ss_pred CCCCHHHHHHHHHHHH------CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHH
Q ss_conf 2899989999999970------8899988999986589011458999999841321256743223000001788899999
Q T0617 36 FGIGMTEWRIISVLSS------ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~------~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~ 109 (148)
.+++..+|.+|..|.. .+++|+++||+.++++++++|+++++|+++|||+|.+ |+|.+.+.||++|++++.
T Consensus 3 ld~s~q~~~aL~~L~~~~~~~~~~~it~~eLa~~l~is~~tvsr~l~~Le~~GlI~R~~---D~R~~~v~LTekG~~~L~ 79 (230)
T 3cta_A 3 LETDDQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV---TKRGQILNITEKGLDVLY 79 (230)
T ss_dssp ----CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC---CCCEEEEEECHHHHHHHH
T ss_conf 76669999999999984520579986899999998888879999999999889989723---797348998887999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q T0617 110 VASDFAIEREK 120 (148)
Q Consensus 110 ~~~~~~~~~~~ 120 (148)
+..+....+..
T Consensus 80 ~~~~~~~~i~~ 90 (230)
T 3cta_A 80 TEFADLSRILA 90 (230)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
T ss_conf 99999999982
No 46
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=98.79 E-value=2.4e-09 Score=81.24 Aligned_cols=103 Identities=13% Similarity=0.271 Sum_probs=74.5
Q ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHH
Q ss_conf 87289998999999997088999889999865----89011458999999841321256743223000001788899999
Q T0617 34 QKFGIGMTEWRIISVLSSASDCSVQKISDILG----LDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
Q Consensus 34 ~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~----i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~ 109 (148)
+.++||.+||.||.+||..||+|+++|.+.+. ++.+|++.++++|+++|+|++.++ +|...+..+-.=.++..
T Consensus 4 k~~~lt~~E~~VM~~LW~~~~~t~~ei~~~l~~~~~~~~~Tv~tlL~RL~~KG~l~r~~~---gr~~~Y~~~v~~~e~~~ 80 (123)
T 1okr_A 4 KTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD---NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp CCCCCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE---TTEEEEEESSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEC---CCCEEEEECCCHHHHHH
T ss_conf 779989999999999984799689999999751359845169999999998898788833---88168874378999999
Q ss_pred HH-HHH--------HHHHHHHHH--HCCCHHHHHHHHHHHH
Q ss_conf 99-999--------999999998--5799989999999999
Q T0617 110 VA-SDF--------AIEREKQLL--EEFEEAEKDQLFILLK 139 (148)
Q Consensus 110 ~~-~~~--------~~~~~~~~~--~~l~~ee~~~l~~~L~ 139 (148)
.. ... .......+. .+++++|.+.+.++++
T Consensus 81 ~~~~~~~~~~~~~s~~~l~~~l~~~~~ls~eel~~L~~~l~ 121 (123)
T 1okr_A 81 KTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILN 121 (123)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999997437999999999836979999999999985
No 47
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D
Probab=98.74 E-value=8.6e-08 Score=70.86 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=63.0
Q ss_pred HHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH--C--
Q ss_conf 708899988999986589011458999999841321256743223000001788899999999999999999985--7--
Q T0617 50 SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLE--E-- 125 (148)
Q Consensus 50 ~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~--~-- 125 (148)
...|++++++||+.+++++++||.++++|+++|||.+.++. .+.||++|+.+...+.....-+.. ++. +
T Consensus 18 ~~~~~v~~~~iA~~L~vs~~svt~~lk~L~~~GlV~~~~~~------~i~LT~~G~~~A~~i~rrHrl~e~-fl~~lg~~ 90 (142)
T 1on2_A 18 EEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYR------GLVLTSKGKKIGKRLVYRHELLEQ-FLRIIGVD 90 (142)
T ss_dssp HHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTT------EEEECHHHHHHHHHHHHHHHHHHH-HHHHTTCC
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC------CEEECHHHHHHHHHHHHHHHHHHH-HHHHHCCC
T ss_conf 63899769999999698878999999999977996506898------667767899999999999999999-99981998
Q ss_pred --------------CCHHHHHHHHHHHHHH
Q ss_conf --------------9998999999999999
Q T0617 126 --------------FEEAEKDQLFILLKKL 141 (148)
Q Consensus 126 --------------l~~ee~~~l~~~L~~l 141 (148)
++++.+..+..+|...
T Consensus 91 ~~~a~~~A~~iEH~ls~e~~~~l~~~l~~p 120 (142)
T 1on2_A 91 EEKIYNDVEGIEHHLSWNSIDRIGDLVQYF 120 (142)
T ss_dssp HHHHHHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 127999999886429999999999996775
No 48
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding protein; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=98.69 E-value=1.5e-07 Score=69.30 Aligned_cols=106 Identities=15% Similarity=0.282 Sum_probs=78.2
Q ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH-
Q ss_conf 8728999899999999708899988999986----58901145899999984132125674322300000178889999-
Q T0617 34 QKFGIGMTEWRIISVLSSASDCSVQKISDIL----GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY- 108 (148)
Q Consensus 34 ~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l----~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~- 108 (148)
+...||..++.||.+||+.||+|++||.+.+ +++++||..++++|+++|||++... +|...+...-.=.++.
T Consensus 4 k~~~ls~~E~~VM~~lW~~~~~t~~eI~~~l~~~~~~~~sTv~T~L~rL~~Kg~l~~~~~---gr~~~Y~~~vs~~e~~~ 80 (126)
T 1sd4_A 4 KQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKS---ENIYFYSSNIKEDDIKM 80 (126)
T ss_dssp -CCCCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECC---CCCEEEEECCCHHHHHH
T ss_conf 679989999999999984899789999998524369848779999999984504045426---88579875579999999
Q ss_pred HHHHHH--------HHHHHHHHHH--CCCHHHHHHHHHHHHHHH
Q ss_conf 999999--------9999999985--799989999999999999
Q T0617 109 EVASDF--------AIEREKQLLE--EFEEAEKDQLFILLKKLR 142 (148)
Q Consensus 109 ~~~~~~--------~~~~~~~~~~--~l~~ee~~~l~~~L~~l~ 142 (148)
...... .......+++ .++++|++.+.++|+++.
T Consensus 81 ~~~~~~~~~~~~gs~~~l~~~~~~~~~ls~~el~~L~~ll~~~~ 124 (126)
T 1sd4_A 81 KTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDIS 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999995899999999998467999999999999999874
No 49
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=98.55 E-value=7.9e-07 Score=64.46 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=67.1
Q ss_pred HHHHHHH----HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997----088999889999865890114589999998413212567432230000017888999999999999999
Q T0617 44 RIISVLS----SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIERE 119 (148)
Q Consensus 44 ~iL~~l~----~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~ 119 (148)
.+|..|+ ..+..++++||..+++++++|++++++|+++|||.+.++ ..+.||++|++....+.....-++
T Consensus 6 dyL~~i~~l~~~~~~v~~~~iA~~L~v~~~sv~~~l~~L~~~glv~~~~~------~~v~LT~~G~~~a~~i~r~hrl~e 79 (214)
T 3hrs_A 6 DYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK------AGYLLTDLGLKLVSDLYRKHRLIE 79 (214)
T ss_dssp HHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT------TEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHHHHHHHHHH
T ss_conf 99999999983499875999999978992899999999998899786389------518987879999999999999999
Q ss_pred HHHHH--CCCHHHHHHHH
Q ss_conf 99985--79998999999
Q T0617 120 KQLLE--EFEEAEKDQLF 135 (148)
Q Consensus 120 ~~~~~--~l~~ee~~~l~ 135 (148)
.-+.+ ++++++...-.
T Consensus 80 ~~l~~~lg~~~~~~~~~A 97 (214)
T 3hrs_A 80 VFLVHHLGYTTEEIHEEA 97 (214)
T ss_dssp HHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHH
T ss_conf 999884089889999999
No 50
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=98.55 E-value=8.7e-07 Score=64.16 Aligned_cols=93 Identities=19% Similarity=0.164 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHH----HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 9998999999997----088999889999865890114589999998413212567432230000017888999999999
Q T0617 38 IGMTEWRIISVLS----SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 38 lt~~q~~iL~~l~----~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
||.+.=..|..|+ ..++.+.++||+.+++++++|+.++++|.++|||+..++ ..+.||++|+.....+..
T Consensus 4 ls~~~EdYL~~Iy~l~~~~~~v~~~~lA~~L~vs~~svt~~l~kL~~~Glv~~~~y------~~i~LT~~G~~~A~~i~r 77 (230)
T 1fx7_A 4 LVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD------RHLELTEKGRALAIAVMR 77 (230)
T ss_dssp TSSHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT------SCEEECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHHHH
T ss_conf 67789999999999984499751999999978991689999999987998897399------877888789999999999
Q ss_pred HHHHHHHHHHH--CCCHHHHHHHHH
Q ss_conf 99999999985--799989999999
Q T0617 114 FAIEREKQLLE--EFEEAEKDQLFI 136 (148)
Q Consensus 114 ~~~~~~~~~~~--~l~~ee~~~l~~ 136 (148)
...-++.-+.+ +++.++...-..
T Consensus 78 rHRl~e~fL~~~lg~~~~~~h~~A~ 102 (230)
T 1fx7_A 78 KHRLAERLLVDVIGLPWEEVHAEAC 102 (230)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999985898879999999
No 51
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA binding protein; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: a.4.5.39
Probab=98.53 E-value=4.7e-07 Score=65.95 Aligned_cols=106 Identities=18% Similarity=0.151 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHCC-CCCHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHH
Q ss_conf 89998999999997088-99988999986----58901145899999984132125674322300000178889999999
Q T0617 37 GIGMTEWRIISVLSSAS-DCSVQKISDIL----GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVA 111 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~-~~t~~eLa~~l----~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~ 111 (148)
-|+..++.||.+||..| |+|++||.+.+ +++.+||..++++|+++|||.+.+. +|...+..+-.-.++....
T Consensus 6 ~L~~~E~~IM~~lW~~~~~~t~~ei~~~l~~~~~~~~sTV~T~L~rL~~KG~l~~~~~---gr~~~Y~p~vs~e~~~~~~ 82 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRD---DRAHRYAPVHGRDELVAGL 82 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC------CCEEEESSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECC---CCCEEEEECCCHHHHHHHH
T ss_conf 7889999999999858999289999998603479948799999999997896224417---9827987468899999999
Q ss_pred H----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9----------999999999985799989999999999999988
Q T0617 112 S----------DFAIEREKQLLEEFEEAEKDQLFILLKKLRNKV 145 (148)
Q Consensus 112 ~----------~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l 145 (148)
. .........+.+.++++|++.+.+++.++..+-
T Consensus 83 ~~~~l~~~~~~gs~~~~~~~~~~~ls~~e~~~L~~li~~~~~~~ 126 (138)
T 2g9w_A 83 MVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELEAGH 126 (138)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999988608989999999998599999999999999987467
No 52
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=98.49 E-value=1.4e-06 Score=62.73 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=64.9
Q ss_pred HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH--CCCH
Q ss_conf 08899988999986589011458999999841321256743223000001788899999999999999999985--7999
Q T0617 51 SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLE--EFEE 128 (148)
Q Consensus 51 ~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~--~l~~ 128 (148)
..+..+.++||+.+++++++|+.++++|.++|||+..++ ..+.||++|++....+.....-++.-+.+ ++++
T Consensus 21 ~~~~~~~~~iA~~L~vs~~svt~~l~~L~~~Glv~~~~~------~~i~LT~~G~~~A~~i~rrHrl~e~fL~~~lg~~~ 94 (226)
T 2qq9_A 21 EGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASD------RSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDI 94 (226)
T ss_dssp HTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT------SBEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 499772999999968990799999999998899998599------88567988999999999999999999999709998
Q ss_pred HHHHHHHH
Q ss_conf 89999999
Q T0617 129 AEKDQLFI 136 (148)
Q Consensus 129 ee~~~l~~ 136 (148)
++...-..
T Consensus 95 ~~a~~~A~ 102 (226)
T 2qq9_A 95 NKVHDEAD 102 (226)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999998
No 53
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=98.36 E-value=2.7e-06 Score=60.85 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=64.5
Q ss_pred HHHHHH-HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 999997-088999889999865890114589999998413212567432230000017888999999999999999999-
Q T0617 45 IISVLS-SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQL- 122 (148)
Q Consensus 45 iL~~l~-~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~- 122 (148)
++..|. ..+.++.++||+.+++++++|+.++++|.+.|||...++ ..+.||++|+.....+.....-++.-+
T Consensus 44 ~Iy~L~~~~~~vr~~dIA~~L~vs~~sV~~~l~~L~~~GlI~~~~~------~~i~LT~~G~~~A~~i~rrHrlle~fL~ 117 (155)
T 2h09_A 44 LISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW------RGVFLTAEGEKLAQESRERHQIVENFLL 117 (155)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT------TEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999996289760999999969887799999999987899776599------8978898799999999999999999999
Q ss_pred HHCCCHHHHHHHHHHH
Q ss_conf 8579998999999999
Q T0617 123 LEEFEEAEKDQLFILL 138 (148)
Q Consensus 123 ~~~l~~ee~~~l~~~L 138 (148)
.-++++++...-...+
T Consensus 118 ~lGv~~~~a~~~A~~i 133 (155)
T 2h09_A 118 VLGVSPEIARRDAEGM 133 (155)
T ss_dssp HHTCCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHH
T ss_conf 9098889999999998
No 54
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=98.27 E-value=1.3e-07 Score=69.67 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 499999999999999999999987289998999999997088999889999865----8901145899999984132125
Q T0617 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILG----LDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 12 ~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~----i~~~~vs~~i~~L~~~gli~r~ 87 (148)
+--|.|....+.+...+-+. .+++||.+|+.||.+||+.|++|++||.+.+. ++++|++.++++|+++|+|.+.
T Consensus 9 ~~~y~~~~~~~~~~~~~m~e--i~~~LS~~E~~VM~vLW~~~~~t~~eI~~~L~~~~~~~~sTv~TlL~RL~~KG~v~r~ 86 (99)
T 2k4b_A 9 HHDYDIPTTENLYFQGAMNE--VEFNVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp ------------------------CCCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 22331428999999999865--0179999999999999907995899999985124487733499999999988987999
Q ss_pred CCCCCCCEECCCC
Q ss_conf 6743223000001
Q T0617 88 GHSEDKRTYAINL 100 (148)
Q Consensus 88 ~~~~D~R~~~l~L 100 (148)
. ++|...+..
T Consensus 87 k---~Gr~~~Y~p 96 (99)
T 2k4b_A 87 K---EGRKFVYRP 96 (99)
T ss_dssp E---ETTEEEEEC
T ss_pred E---CCCEEEEEE
T ss_conf 5---299089987
No 55
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=98.21 E-value=1.2e-06 Score=63.12 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHH
Q ss_conf 9998999999997088999889999--865890114589999998413212567432230000017888999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISD--ILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~--~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~ 110 (148)
+++....||.+|..+|++++++||. .+++++++|++.++.|++.|||++... + .+.||++|++++..
T Consensus 11 m~~~d~rILe~L~~~g~~t~~elA~~~~lgis~~~Vs~hL~~L~~~GLVe~~~~---G---~Y~LT~~G~~~L~~ 79 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLAN---G---VYVITEEGEAYLNG 79 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECST---T---CEEECHHHHHHHTT
T ss_pred HCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCC---E---EEEECHHHHHHHHH
T ss_conf 033799999999985998899998770579899999999999998898777786---5---48989389999989
No 56
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=98.17 E-value=2.6e-06 Score=60.96 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEC
Q ss_conf 999999999999998728999899999999--708899988999986589011458999999841321256743223000
Q T0617 20 LANKLMLKSSTAYTQKFGIGMTEWRIISVL--SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYA 97 (148)
Q Consensus 20 l~~~~~~~~~~~~~~~~glt~~q~~iL~~l--~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~ 97 (148)
..+.+. ++.+.+.++|+++..|+.+|.+| ++..+++..++++.+..++..++..+++|...|+|.++++-.|.|.+.
T Consensus 385 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 1hsj_A 385 ATFQVK-KFFRDTKKKFNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVI 463 (487)
T ss_dssp HHHHHH-HHHHHHSSSCCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCE
T ss_pred HHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf 999999-9999999987313028999999998615786499998641678112048898877512101113576510799
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 00178889999999999
Q T0617 98 INLTEMGQELYEVASDF 114 (148)
Q Consensus 98 l~LT~~G~~~~~~~~~~ 114 (148)
++||++-++-+..+...
T Consensus 464 ~~~~~~~~~~~~~~~~~ 480 (487)
T 1hsj_A 464 VYVTDTQKANIQKLISE 480 (487)
T ss_dssp EECCSSHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHH
T ss_conf 99627678779999999
No 57
>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=98.16 E-value=7.3e-06 Score=58.03 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=61.6
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHH
Q ss_conf 987289998999999997088999889999865890114589999998413212567432230000017888999999
Q T0617 33 TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~ 110 (148)
.+..+ .+....||..|.. +|+++++|++.++++++++|..++.|++.|+|+..+ ++|.+.+.+++.+..-+.+
T Consensus 15 fkaLa-dp~R~~Il~~L~~-~~~~v~eLa~~l~~s~~~vS~HL~~L~~aGLV~~~r---~Gr~~~Y~l~~~~l~~l~~ 87 (114)
T 2oqg_A 15 FAALS-DETRWEILTELGR-ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVK---VGREIRYRALGAELNKTAR 87 (114)
T ss_dssp HHHTT-CHHHHHHHHHHHH-SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEECSHHHHHHHH
T ss_pred HHHHC-CHHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEE---ECCEEEEEECHHHHHHHHH
T ss_conf 99948-9999999999981-995899999998919999999999999889871154---3898898878499999999
No 58
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} SCOP: a.4.5.69
Probab=98.00 E-value=2.5e-05 Score=54.44 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=65.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999708899988999986-589011458999999841321256743223000001788899999999999999999
Q T0617 43 WRIISVLSSASDCSVQKISDIL-GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQ 121 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l-~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~ 121 (148)
..||..|. .|+...+||.+.+ ++++...|+.++.|++.|+|+|...+.....+.+.||++|+++.+-+.+ +..|-+.
T Consensus 25 ~~Il~~L~-~g~~RF~el~~~l~gIS~~~Ls~rLk~Le~~glv~R~~~~~~p~rveY~LT~~G~~L~pil~~-l~~W~~~ 102 (112)
T 1z7u_A 25 LSLMDELF-QGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALSS-LCHWGET 102 (112)
T ss_dssp HHHHHHHH-HSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 99999997-299879999987622002169998989996886124325788863040434758799999999-9999999
Q ss_pred HH
Q ss_conf 98
Q T0617 122 LL 123 (148)
Q Consensus 122 ~~ 123 (148)
..
T Consensus 103 ~~ 104 (112)
T 1z7u_A 103 FA 104 (112)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 59
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=97.92 E-value=8.9e-06 Score=57.43 Aligned_cols=76 Identities=13% Similarity=0.160 Sum_probs=61.9
Q ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 87289998999999997088999889999865890114589999998413212567432230000017888999999999
Q T0617 34 QKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 34 ~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
+..+ .+.-..||..|.. +++++++|++.++++++++|..++.|++.|+|+..+ +||.+.+.|.+.+..-+.....
T Consensus 13 kaLa-~p~R~~Il~~L~~-~~~~v~ela~~l~~s~~~vs~HL~~L~~aGlV~~~r---~Gr~~~Y~l~~~~l~~l~~~l~ 87 (118)
T 3f6o_A 13 QALA-DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHK---QGRVRTCAIEKEPFTAVEAWLA 87 (118)
T ss_dssp HHHT-SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEECSHHHHHHHHHHH
T ss_pred HHHC-CHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEE---ECCEEEEEECHHHHHHHHHHHH
T ss_conf 9958-9999999999980-997777779886969999999998899889862677---7888999988799999999999
Q ss_pred H
Q ss_conf 9
Q T0617 114 F 114 (148)
Q Consensus 114 ~ 114 (148)
.
T Consensus 88 ~ 88 (118)
T 3f6o_A 88 E 88 (118)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 60
>2esh_A Conserved hypothetical protein TM0937; APC5794, X-RAY, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} SCOP: a.4.5.61
Probab=97.91 E-value=5.5e-05 Score=52.19 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH---------CCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-EECCCCCHHHHHHHH
Q ss_conf 9899999999708899988999986---------589011458999999841321256743223-000001788899999
Q T0617 40 MTEWRIISVLSSASDCSVQKISDIL---------GLDKAAVSRTVKKLEEKKYIEVNGHSEDKR-TYAINLTEMGQELYE 109 (148)
Q Consensus 40 ~~q~~iL~~l~~~~~~t~~eLa~~l---------~i~~~~vs~~i~~L~~~gli~r~~~~~D~R-~~~l~LT~~G~~~~~ 109 (148)
.-++.||..|.+.| .+.-+|.+.+ .++++++-..+++|+++|||+....+.++| .+.+.+|++|++.+.
T Consensus 13 ~l~~~IL~lL~~~p-~~GYei~~~i~~~~~~~~~~~~~gtiY~~L~rLe~~GlI~~~~~~~~g~~Rk~Y~iT~~G~~~l~ 91 (118)
T 2esh_A 13 WLASTILLLVAEKP-SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLR 91 (118)
T ss_dssp HHHHHHHHHHHHSC-BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECHHHHHHHH
T ss_conf 79999999985089-78999999999964687116897838999999998898599840479988669898988999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q T0617 110 VASDFAIE 117 (148)
Q Consensus 110 ~~~~~~~~ 117 (148)
+.......
T Consensus 92 ~~~~~~~~ 99 (118)
T 2esh_A 92 EILRSLED 99 (118)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 61
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=97.90 E-value=9.9e-06 Score=57.14 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHH
Q ss_conf 9989999999970889998899998658901145899999984132125674322300000178889999999
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVA 111 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~ 111 (148)
.+....||..|. .|++++++|++.++++++++|+.++.|.+.|+|+.++ ++|.+++.|++.+.+.+...
T Consensus 57 dPtRl~IL~~L~-~g~~tv~eLa~~lgisqstvS~HL~~L~~aGLV~~~r---~Gr~~~Y~L~~~~l~~l~~~ 125 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRK---DGRFRYYRLDPQGLAQLRAL 125 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEE---ECCEEEEEECHHHHHHHHHH
T ss_conf 999999999998-2991799999998878778999875498699357898---77989999886999999999
No 62
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural genomics, PSI-2, protein structure initiative; 2.70A {Enterococcus faecalis V583}
Probab=97.89 E-value=4.4e-05 Score=52.83 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHCCCCC--CCCCEECCCCCHHHHHHHHH
Q ss_conf 998999999997088999889999865------8901145899999984132125674--32230000017888999999
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILG------LDKAAVSRTVKKLEEKKYIEVNGHS--EDKRTYAINLTEMGQELYEV 110 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~------i~~~~vs~~i~~L~~~gli~r~~~~--~D~R~~~l~LT~~G~~~~~~ 110 (148)
..-++.||..|.. +|++.-+|.+.+. ++.+++-..+++|++.|||+....+ ..++.+.+.||++|++.+.+
T Consensus 12 G~l~~~IL~lL~~-~~~~GYei~~~l~~~~~~~~s~gtlY~~L~rLe~~G~I~~~~~~~~~g~~rk~Y~iT~~G~~~L~~ 90 (116)
T 3hhh_A 12 GILEGLVLAIIQR-KETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELAD 90 (116)
T ss_dssp THHHHHHHHHHHH-SCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHH
T ss_conf 5899999999843-998899999999983897889766499999999779679998554789875699989889999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q T0617 111 ASDFAIER 118 (148)
Q Consensus 111 ~~~~~~~~ 118 (148)
....+...
T Consensus 91 ~~~~~~~~ 98 (116)
T 3hhh_A 91 FWQRWTLL 98 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 63
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=97.89 E-value=1.2e-05 Score=56.56 Aligned_cols=81 Identities=11% Similarity=0.179 Sum_probs=66.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999708899988999986-589011458999999841321256743223000001788899999999999999999
Q T0617 43 WRIISVLSSASDCSVQKISDIL-GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQ 121 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l-~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~ 121 (148)
..||..|. .|+...+||.+.+ ++++..+|..++.|++.|+|+|...+.....+.+.||++|+++.+-+.+ ...|-..
T Consensus 17 ~~IL~~L~-~g~~rF~el~~~l~gIS~~~Ls~rLk~L~~~GLv~R~~~~~~p~rveY~LT~~G~~L~pvl~~-l~~Wg~~ 94 (107)
T 2hzt_A 17 XVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDM-LXAWGAN 94 (107)
T ss_dssp HHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHH-HHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH-HHHHHHH
T ss_conf 99999998-299869999977625588899999999998888202036999981577668348899999999-9999999
Q ss_pred HHHC
Q ss_conf 9857
Q T0617 122 LLEE 125 (148)
Q Consensus 122 ~~~~ 125 (148)
..+.
T Consensus 95 ~~~~ 98 (107)
T 2hzt_A 95 HINR 98 (107)
T ss_dssp HHTC
T ss_pred HHHH
T ss_conf 7875
No 64
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=97.87 E-value=1.8e-05 Score=55.46 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=60.4
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHH
Q ss_conf 9872899989999999970889998899998658901145899999984132125674322300000178889
Q T0617 33 TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQ 105 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~ 105 (148)
.+.++ .+....+|..|...|++++++|++.++++++++|..++.|.+.|+|..++ +||.+++.|++...
T Consensus 36 fkaL~-dp~Rl~Il~~L~~~~~~~v~ela~~l~is~~~vS~HL~~L~~~GlV~~~r---~Gr~~~Y~l~~~~i 104 (122)
T 1u2w_A 36 LKAIA-DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRK---EGKLALYSLGDEHI 104 (122)
T ss_dssp HHHHH-SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-------CCEEEESCHHH
T ss_pred HHHHC-CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEE---ECCEEEEEECHHHH
T ss_conf 99958-99999999999887990699999888457007999999999889258999---88899999886999
No 65
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} PDB: 3f8c_A* 3f8f_A*
Probab=97.86 E-value=8e-05 Score=51.09 Aligned_cols=77 Identities=25% Similarity=0.232 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH--------CCCCCHHHHHHHHHHHHHHHHCCCCC--CCCCEECCCCCHHHHHHHH
Q ss_conf 9899999999708899988999986--------58901145899999984132125674--3223000001788899999
Q T0617 40 MTEWRIISVLSSASDCSVQKISDIL--------GLDKAAVSRTVKKLEEKKYIEVNGHS--EDKRTYAINLTEMGQELYE 109 (148)
Q Consensus 40 ~~q~~iL~~l~~~~~~t~~eLa~~l--------~i~~~~vs~~i~~L~~~gli~r~~~~--~D~R~~~l~LT~~G~~~~~ 109 (148)
..++.||..|.. +|.+.-+|...+ .++.+++-..+++|++.|||+....+ ..++.+.+.||++|++.+.
T Consensus 12 ~l~~~IL~lL~~-~~~~GYei~~~i~~~~~~~~~i~~g~lY~~L~rL~~~GlI~~~~~~~~~g~~rk~Y~iT~~G~~~l~ 90 (116)
T 3f8b_A 12 QTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMR 90 (116)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHH
T ss_conf 499999999871-8988999999999983993168977549999999978976899631578987659998988999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q T0617 110 VASDFAIE 117 (148)
Q Consensus 110 ~~~~~~~~ 117 (148)
+....+..
T Consensus 91 ~~~~~~~~ 98 (116)
T 3f8b_A 91 LAFESWSR 98 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 66
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=97.84 E-value=2.9e-05 Score=53.99 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=61.1
Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHH
Q ss_conf 99872899989999999970889998899998658901145899999984132125674322300000178889
Q T0617 32 YTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQ 105 (148)
Q Consensus 32 ~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~ 105 (148)
+.+..+ ++....||..|...|++++++|++.+++++|++|..++.|.+.|+|+.++ +||.+++.+++...
T Consensus 17 ~~kaL~-~p~Rl~Il~~L~~~~~~~~~ela~~l~ls~stvS~HL~~L~~aGlV~~~r---~G~~~~Y~l~~~~~ 86 (99)
T 3cuo_A 17 LLKAMS-HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQR---DAQRILYSIKNEAV 86 (99)
T ss_dssp HHHHHC-SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE---CSSCEEEEECCHHH
T ss_pred HHHHHC-CHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE---ECCEEEEEECHHHH
T ss_conf 999858-99999999999769994199999998929878999999999889517998---88999999886999
No 67
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=97.81 E-value=4.1e-05 Score=53.02 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=61.2
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999970889998899998658901145899999984132125674322300000178889999999999999999998
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLL 123 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~ 123 (148)
.||..| ..|+...+||.+.+++++..+|..++.|++.|+|++..++. ...+.+.||++|++++.-+. .+.+|-++.+
T Consensus 28 ~IL~~l-~~g~~RF~eL~~~lgiS~~vLs~rL~~L~~~gLv~r~~~~~-p~r~eY~LT~~G~~L~~il~-~L~~W~~~~~ 104 (146)
T 2f2e_A 28 LIVRDA-FEGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAES-GSHQEYRLTDKGRALFPLLV-AIRQWGEDYF 104 (146)
T ss_dssp HHHHHH-HTTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS-SSCEEEEECHHHHTTHHHHH-HHHHHHHHHS
T ss_pred HHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC-CCCEEEEECHHHHHHHHHHH-HHHHHHHHHC
T ss_conf 999999-74997799999884878999999999999889837756899-98158733976989999999-9999999977
No 68
>1yyv_A Putative transcriptional regulator; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 2.35A {Salmonella typhimurium LT2} SCOP: a.4.5.69
Probab=97.81 E-value=2.7e-05 Score=54.21 Aligned_cols=79 Identities=11% Similarity=0.292 Sum_probs=63.7
Q ss_pred HHH--HHHHHHHCCCCCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999--99999708899988999986-589011458999999841321256743223000001788899999999999999
Q T0617 42 EWR--IISVLSSASDCSVQKISDIL-GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIER 118 (148)
Q Consensus 42 q~~--iL~~l~~~~~~t~~eLa~~l-~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~ 118 (148)
.|. ||..| ..|+...+||.+.+ ++++..+|+.++.|++.|+|+|...+.....+.+.||++|+++.+-+.+. ..|
T Consensus 35 kW~l~Il~~L-~~g~~RF~el~~~l~gIS~~vLs~rLk~Le~~GlV~R~~~~~~p~rveY~LT~~G~~L~~il~~l-~~W 112 (131)
T 1yyv_A 35 RWGVLILVAL-RDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVAAL-ADW 112 (131)
T ss_dssp HHHHHHHHHG-GGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHHHH-HHH
T ss_pred CCHHHHHHHH-HCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 9899999999-73998699999883331058899999999977931555258887349999708799999999999-999
Q ss_pred HHHH
Q ss_conf 9999
Q T0617 119 EKQL 122 (148)
Q Consensus 119 ~~~~ 122 (148)
-+.-
T Consensus 113 ~~~~ 116 (131)
T 1yyv_A 113 IELN 116 (131)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9998
No 69
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn- HEIX, structural genomics, PSI; HET: MSE; 2.16A {Porphyromonas gingivalis W83} SCOP: a.4.5.69
Probab=97.81 E-value=2.1e-05 Score=54.95 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=61.5
Q ss_pred HHHHHHHHHCCCCCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999999708899988999986-58901145899999984132125674322300000178889999999999
Q T0617 43 WRIISVLSSASDCSVQKISDIL-GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l-~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
..||..|. .|+...+||.+.+ ++++..+|..++.|++.|+|+|...+.....+.+.||++|+++.+-+.+.
T Consensus 28 l~Il~~L~-~g~~rF~el~~~l~gIs~~~Ls~rLk~L~~~glv~r~~~~~~p~~veY~LT~~G~~L~pil~~l 99 (107)
T 2fsw_A 28 LLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIIDEI 99 (107)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 99999981-5998799998673123878999999999988881445679999835776482588999999999
No 70
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=97.76 E-value=0.00016 Score=49.05 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCEECCCCCHH
Q ss_conf 998999999997088999889999865890114589999998413212567432--23000001788
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED--KRTYAINLTEM 103 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D--~R~~~l~LT~~ 103 (148)
++....||..|. .+|.|+++||+.+++++++|++.++.|++.|+|+....... ++.+.+.+|+.
T Consensus 19 ~~~R~~Il~~L~-~~~~t~~ela~~l~~s~~~v~~hL~~L~~~glv~~~~~~~~~g~~~k~y~~~~~ 84 (192)
T 1uly_A 19 EDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTAD 84 (192)
T ss_dssp SHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSS
T ss_pred CHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 999999999998-299689999999890999999999999888984899860447850389986452
No 71
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=97.72 E-value=0.00012 Score=49.88 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH---HHHHCCCCCCCCCEECCCCCHHHHHHHHHHH
Q ss_conf 2899989999999970889998899998658901145899999984---1321256743223000001788899999999
Q T0617 36 FGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK---KYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~---gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 112 (148)
.-+.+.|..++..+.+.| +.+.-|+.+++++|++|+.|++||+. -|.+|.... .+..-+.||+.|+.++..+.
T Consensus 18 ~~~d~r~l~~f~av~~~G--S~t~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~~~--~~~~~~~LT~~Ge~ll~~a~ 93 (265)
T 1b9m_A 18 LFADPRRISLLKHIALSG--SISQGAKDAGISYKSAWDAINEMNQLSEHILVERATGG--KGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp EEECHHHHHHHHHHHHHS--SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEECCCC-------EEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCC--CCCCCEEEEHHHHHHHHHHH
T ss_conf 576989999999999979--99999999698999999999999986198579995466--67862587288999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q T0617 113 DFAIEREK 120 (148)
Q Consensus 113 ~~~~~~~~ 120 (148)
.......+
T Consensus 94 ~ll~~~~~ 101 (265)
T 1b9m_A 94 LLAQIQQK 101 (265)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 72
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=97.70 E-value=0.00011 Score=50.19 Aligned_cols=84 Identities=13% Similarity=0.019 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHH-------CCCCCHHHHHHHHHHHHHHHHCCC--CC-CCCCEECCCCCHHHHH
Q ss_conf 8999899999999708899988999986-------589011458999999841321256--74-3223000001788899
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDIL-------GLDKAAVSRTVKKLEEKKYIEVNG--HS-EDKRTYAINLTEMGQE 106 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l-------~i~~~~vs~~i~~L~~~gli~r~~--~~-~D~R~~~l~LT~~G~~ 106 (148)
+.....+.||..|.+. ++..-+|.+.+ .++.+++-..+++|+++|||+... .+ ..+..+.+.||++|++
T Consensus 19 ~~~l~~~~IL~~L~e~-~~yGYei~~~l~~~~~~~~is~gtlYp~L~rLe~~GlI~s~~~~~~~~g~~Rk~Y~iT~~G~~ 97 (115)
T 2dql_A 19 CQEVAICYILYVLLQG-ESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQH 97 (115)
T ss_dssp CHHHHHHHHHHHHTTS-CBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHH
T ss_pred HHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHH
T ss_conf 5066999999998159-978999999999977950579873699999999889869997523788876369998987999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q T0617 107 LYEVASDFAIEREKQ 121 (148)
Q Consensus 107 ~~~~~~~~~~~~~~~ 121 (148)
.+.+....+..+...
T Consensus 98 ~L~~~~~~W~~~i~~ 112 (115)
T 2dql_A 98 QAEDLARLWQNYIYV 112 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999986
No 73
>1xma_A Predicted transcriptional regulator; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=97.66 E-value=0.00019 Score=48.63 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHH--------HCCCCCHHHHHHHHHHHHHHHHCCCCC--CCCCEECCCCCHHHHHHHH
Q ss_conf 989999999970889998899998--------658901145899999984132125674--3223000001788899999
Q T0617 40 MTEWRIISVLSSASDCSVQKISDI--------LGLDKAAVSRTVKKLEEKKYIEVNGHS--EDKRTYAINLTEMGQELYE 109 (148)
Q Consensus 40 ~~q~~iL~~l~~~~~~t~~eLa~~--------l~i~~~~vs~~i~~L~~~gli~r~~~~--~D~R~~~l~LT~~G~~~~~ 109 (148)
..+..||..|...| +..-+|.+. ..++++++-..+++|+++|||+....+ ..++.+.+.||++|++.+.
T Consensus 41 ~l~llIL~lL~~~p-~~GYeI~k~i~~~~~~~~~is~gsIYp~L~rLe~~GlI~~~~~~~~~gr~Rk~Y~IT~~G~~~L~ 119 (145)
T 1xma_A 41 YVDTIILSLLIEGD-SYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYK 119 (145)
T ss_dssp THHHHHHHHHHHCC-EEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHH
T ss_conf 39999999975089-88999999999974994257877432999999978973888763589976469998988999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q T0617 110 VASDFAIEREKQL 122 (148)
Q Consensus 110 ~~~~~~~~~~~~~ 122 (148)
+....+..+.+.+
T Consensus 120 ~~~~ew~~~~~~i 132 (145)
T 1xma_A 120 QKCEEWELTKKVI 132 (145)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 74
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=97.65 E-value=3.8e-05 Score=53.28 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 89998999999997088999889999865----89011458999999841321256743223000001
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILG----LDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINL 100 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~----i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~L 100 (148)
.||..++.||.+||..|+.|+++|.+.+. ...+|+..++++|+++|+|.+... +|...+..
T Consensus 6 ~Lt~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~T~L~RL~~Kg~l~~~~~---gr~~~Y~p 70 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKE---GRVFVYTP 70 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEE
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEC---CCEEEEEE
T ss_conf 999999999999981799789999998602369728579999999998898688725---98389985
No 75
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=97.64 E-value=0.00022 Score=48.21 Aligned_cols=67 Identities=25% Similarity=0.393 Sum_probs=56.6
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHH
Q ss_conf 987289998999999997088999889999865890114589999998413212567432230000017888
Q T0617 33 TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMG 104 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G 104 (148)
.+..+ .+....||..|.+ +++++++|++.++++++++|+.++.|.+.|+|..++ ++|.+++++.+..
T Consensus 20 ~kaL~-~p~Rl~Il~~L~~-~~~~v~ela~~l~~s~stvS~HL~~L~~aglV~~~r---~G~~~~Y~l~~~~ 86 (106)
T 1r1u_A 20 FKALG-DYNRIRIMELLSV-SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKR---QGQSMIYSLDDIH 86 (106)
T ss_dssp HHHTC-SHHHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEESSHH
T ss_pred HHHHC-CHHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE---ECCEEEEEECHHH
T ss_conf 99958-9999999999983-994699999887658668999999999889148998---8789999988299
No 76
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, protein structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=97.64 E-value=7e-05 Score=51.47 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHCCCCC--CCCCEECCCCCHHHHHHHHHHH
Q ss_conf 8999999997088999889999865------8901145899999984132125674--3223000001788899999999
Q T0617 41 TEWRIISVLSSASDCSVQKISDILG------LDKAAVSRTVKKLEEKKYIEVNGHS--EDKRTYAINLTEMGQELYEVAS 112 (148)
Q Consensus 41 ~q~~iL~~l~~~~~~t~~eLa~~l~------i~~~~vs~~i~~L~~~gli~r~~~~--~D~R~~~l~LT~~G~~~~~~~~ 112 (148)
-++.||..|.+ +|.+.-+|.+.+. ++.+++-..+++|+++|||+..... ..++.+.+.||++|++.+.+..
T Consensus 15 l~l~IL~~L~~-~p~~GYel~~~i~~~~~~~~s~gtlY~~L~rLe~~G~I~~~~~~~~~~~~rk~Y~iT~~G~~~L~~~~ 93 (117)
T 3elk_A 15 ITLYILKELVK-RPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHS 93 (117)
T ss_dssp HHHHHHHHHHH-SCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTS
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 99999999870-89889999999999729999975489999999988986999754589988669898988999999999
Q ss_pred HH---HHHHHHHHHHCC
Q ss_conf 99---999999998579
Q T0617 113 DF---AIEREKQLLEEF 126 (148)
Q Consensus 113 ~~---~~~~~~~~~~~l 126 (148)
.. .....+.++.++
T Consensus 94 ~~~~~~~~~id~~l~~~ 110 (117)
T 3elk_A 94 QALQLARKIIDDLLSTV 110 (117)
T ss_dssp TTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999988
No 77
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, PSI-2, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium}
Probab=97.63 E-value=0.00011 Score=50.26 Aligned_cols=69 Identities=25% Similarity=0.318 Sum_probs=56.1
Q ss_pred HHHHHHHHHCCC-CCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999999970889-9988999986-589011458999999841321256743223000001788899999999999
Q T0617 43 WRIISVLSSASD-CSVQKISDIL-GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFA 115 (148)
Q Consensus 43 ~~iL~~l~~~~~-~t~~eLa~~l-~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~ 115 (148)
..||..|...+. .+-+||.+.+ ++++..+|..++.|++.|+|+|...+ .+.+.||++|+++.+-+.+..
T Consensus 30 l~Il~~L~~g~~r~~F~el~~~l~gIS~~~Ls~rLk~L~~~glI~r~~p~----~~~Y~LT~~G~~L~~il~~L~ 100 (111)
T 3df8_A 30 MLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQ----ITTYALTEKGMNVRNSLMPLL 100 (111)
T ss_dssp HHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESS----SEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCC----CCEEEECCCHHHHHHHHHHHH
T ss_conf 99999998089877799999774134788999999899978978867799----855865948888999999999
No 78
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=97.63 E-value=5.5e-05 Score=52.17 Aligned_cols=68 Identities=12% Similarity=0.231 Sum_probs=56.2
Q ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHH
Q ss_conf 8728999899999999708899988999986589011458999999841321256743223000001788899
Q T0617 34 QKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQE 106 (148)
Q Consensus 34 ~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~ 106 (148)
+..+ .+....||..|.. ++++++||++.++++++++|+.++.|...|+|+.++ ++|.+.+.+++....
T Consensus 20 kaLs-~p~Rl~Il~~L~~-~~~~v~eLa~~l~is~stvS~HL~~L~~aGlV~~~k---~Gr~~~Y~l~~~~i~ 87 (108)
T 2kko_A 20 KALA-NGRRLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALKSGGLVEARR---EGTRQYYRIAGEDVA 87 (108)
T ss_dssp HHHT-TSTTHHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE---ETTEEEEEESCHHHH
T ss_pred HHHC-CHHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE---ECCEEEEEECHHHHH
T ss_conf 9948-9999999999981-997899999998909999999999999889227998---889999998909999
No 79
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=97.62 E-value=0.0002 Score=48.46 Aligned_cols=67 Identities=18% Similarity=0.326 Sum_probs=56.4
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHH
Q ss_conf 987289998999999997088999889999865890114589999998413212567432230000017888
Q T0617 33 TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMG 104 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G 104 (148)
.+.++ .+....||..|.. ++.++++|++.++++++++|+.++.|.+.|+|..++ ++|.+++.+.+..
T Consensus 40 fkaLa-dp~Rl~IL~~L~~-~~~~v~eLa~~l~ls~stvS~HL~~L~~aGLV~~~r---~Gr~~~Y~l~~~~ 106 (122)
T 1r1t_A 40 FAVLA-DPNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRK---QGRHVYYQLQDHH 106 (122)
T ss_dssp HHHHC-CHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEESSHH
T ss_pred HHHHC-CHHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE---ECCEEEEEECHHH
T ss_conf 99958-9999999999981-995699999998919889999999999889137898---7588999978099
No 80
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=97.62 E-value=4.5e-05 Score=52.78 Aligned_cols=65 Identities=23% Similarity=0.222 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC--CCCCCEECCCCCHHH
Q ss_conf 998999999997088999889999865890114589999998413212567--432230000017888
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH--SEDKRTYAINLTEMG 104 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~--~~D~R~~~l~LT~~G 104 (148)
++.-..||..|. .+|+|+++||+.+++++++|++.++.|++.|+|+.... +..+..+.+.+|+.|
T Consensus 14 ~~~R~~Il~~L~-~~~~~~~ela~~l~is~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~ 80 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred CHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCC
T ss_conf 999999999998-1998899999998909989999999999889807997314798614899808876
No 81
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=97.57 E-value=0.00012 Score=49.87 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=57.1
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHH
Q ss_conf 9872899989999999970889998899998658901145899999984132125674322300000178889
Q T0617 33 TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQ 105 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~ 105 (148)
.+..+ ++....||..|. +++.++++|++.+++++|++|..++.|.+.|+|+.++ ++|.+.+++.+...
T Consensus 17 ~kaL~-~~~Rl~Il~~L~-~~~~~v~ela~~l~is~~tvS~HL~~L~~aglV~~~r---~G~~~~Y~l~~~~~ 84 (98)
T 3jth_A 17 LKAMA-NERRLQILCMLH-NQELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRK---EAQTVYYTLKSEEV 84 (98)
T ss_dssp HHHHC-SHHHHHHHHHTT-TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC---CTTCCEEEECCHHH
T ss_pred HHHHC-CHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE---ECCEEEEEECHHHH
T ss_conf 99838-999999999998-1996799999998929889999999999889536998---87899999885999
No 82
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=97.55 E-value=6.9e-05 Score=51.51 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=58.3
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHH
Q ss_conf 98728999899999999708899988999986589011458999999841321256743223000001788899
Q T0617 33 TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQE 106 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~ 106 (148)
.+..+ .+.-..+|..|...|++++++|++.+++++|++|..++.| +.|+|..++ ++|.+.+++.+....
T Consensus 21 ~kaL~-~p~Rl~Il~~L~~~~~~~v~ela~~l~~s~stvS~HL~~L-~aglV~~~r---~G~~~~Y~l~~~~i~ 89 (99)
T 2zkz_A 21 LKTMA-HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKM-RGKVLKRNR---QGLEIYYSINNPKVE 89 (99)
T ss_dssp HHHHC-SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHH-BTTTBEEEE---ETTEEEEECCCHHHH
T ss_pred HHHHC-CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCCEEEE---ECCEEEEEECHHHHH
T ss_conf 99938-9999999999964799059999999885876899999999-829734898---758899998909999
No 83
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcription factor; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=97.55 E-value=0.00021 Score=48.30 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=65.5
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHH--------CCCCCHHHHHHHHHHHHHHHHCCCCCCCCC--EECCCCCHHHHHHHHHH
Q ss_conf 99999999708899988999986--------589011458999999841321256743223--00000178889999999
Q T0617 42 EWRIISVLSSASDCSVQKISDIL--------GLDKAAVSRTVKKLEEKKYIEVNGHSEDKR--TYAINLTEMGQELYEVA 111 (148)
Q Consensus 42 q~~iL~~l~~~~~~t~~eLa~~l--------~i~~~~vs~~i~~L~~~gli~r~~~~~D~R--~~~l~LT~~G~~~~~~~ 111 (148)
++.||..|.. +|.+.-+|.+.+ .++.+++-..+++|+++|||+....+.+++ .+.+.+|++|++.+.+.
T Consensus 4 ~~~iLglL~~-~p~~GYel~k~~~~~~~~~w~~s~g~IY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~G~~~l~~w 82 (179)
T 1yg2_A 4 PHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEW 82 (179)
T ss_dssp HHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHH
T ss_conf 9999999871-899999999999998388417997819999999997797478852068998763778888899999999
Q ss_pred HHHHH-------HHHH--HHHHCCCHHHHHHHH
Q ss_conf 99999-------9999--998579998999999
Q T0617 112 SDFAI-------EREK--QLLEEFEEAEKDQLF 135 (148)
Q Consensus 112 ~~~~~-------~~~~--~~~~~l~~ee~~~l~ 135 (148)
..... .+.- .+++.+++++.....
T Consensus 83 l~~~~~~~~~~~~~~~kl~f~~~l~~~~~~~~L 115 (179)
T 1yg2_A 83 FDQPTAHPTVRDEFSAKLMACSVQSAEPYRLQL 115 (179)
T ss_dssp HHSCCCCCCCCCHHHHHHHGGGTSCHHHHHHHH
T ss_pred HHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 855545886413799999970239989999999
No 84
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=97.52 E-value=0.0003 Score=47.22 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=55.7
Q ss_pred HHCCCCHHHHHHHHHHHH---CC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC--CCCEECCCCCHHHHH
Q ss_conf 872899989999999970---88--99988999986589011458999999841321256743--223000001788899
Q T0617 34 QKFGIGMTEWRIISVLSS---AS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE--DKRTYAINLTEMGQE 106 (148)
Q Consensus 34 ~~~glt~~q~~iL~~l~~---~~--~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~--D~R~~~l~LT~~G~~ 106 (148)
+++|||..++.++..|.. .+ .+++..||+.+|+++.+|.+.++.|+++|||++..... .+..-.+.++|-=.+
T Consensus 26 ~~lgLs~~e~~vll~l~~~~~~~~~~PS~~~LA~~~g~s~~~v~~~l~~L~~kG~i~i~~~~~~~g~~~~~Y~l~pl~~k 105 (128)
T 2vn2_A 26 KQLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEK 105 (128)
T ss_dssp TTTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECHHHHHH
T ss_conf 66299978899999999998669999999999989792999999999999988997998554689866888742699999
No 85
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=97.51 E-value=0.0011 Score=43.52 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH-HHHHHHHHHHHCCCHHHHH
Q ss_conf 999889999865890114589999998413212567432230000017888999999999-9999999998579998999
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD-FAIEREKQLLEEFEEAEKD 132 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~-~~~~~~~~~~~~l~~ee~~ 132 (148)
.++..+||+.+|+++++|-..+++|+..|||+..+. +....-.+|++...-+.++.. .............+++++.
T Consensus 49 ~L~e~~La~~~gvSRtpVReAL~~L~~eGlv~~~p~---~G~~V~~~~~~~~~~~~~~R~~lE~~a~~~a~~~~~~~~l~ 125 (237)
T 3c7j_A 49 ALRQQELATLFGVSRMPVREALRQLEAQSLLRVETH---KGAVVAPLITEDAVDAYALRILLESEALRLSIPLLDADDLA 125 (237)
T ss_dssp BCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT---TEEEECCCHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 759999999879496999999999998788740489---98501334122212689999878999999998728899999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q T0617 133 QLFILLKKLRN 143 (148)
Q Consensus 133 ~l~~~L~~l~~ 143 (148)
.+...+..+..
T Consensus 126 ~l~~~~~~~~~ 136 (237)
T 3c7j_A 126 AAASYIEQLEV 136 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 86
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=97.50 E-value=0.00054 Score=45.56 Aligned_cols=75 Identities=25% Similarity=0.351 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH---HHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 89998999999997088999889999865890114589999998---413212567432230000017888999999999
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE---KKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~---~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
.++..|+.++..+.+.| +.+.-|+.+++|.|++|+.|++||+ ..|.+|. ...+.+|+.|+.++..+..
T Consensus 2 ~~~~~qL~~F~~v~e~g--s~s~AA~~L~vsQpavS~~I~~LE~~lg~~LF~R~-------~~~~~lT~~G~~l~~~a~~ 72 (306)
T 3hhg_A 2 KTNSEELTVFVQVVESG--SFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRT-------TRQLSLTEEGAQYFRRAQR 72 (306)
T ss_dssp CCCHHHHHHHHHHHHSS--SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEETT-------SSSCEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEECHHHHHHHHHHHH
T ss_conf 99889999999999819--99999999887989999999999999699999986-------9956888636433378999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q T0617 114 FAIEREK 120 (148)
Q Consensus 114 ~~~~~~~ 120 (148)
.......
T Consensus 73 il~~~~~ 79 (306)
T 3hhg_A 73 ILQEMAA 79 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9998876
No 87
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, structural genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum ms-1}
Probab=97.50 E-value=0.00027 Score=47.51 Aligned_cols=99 Identities=10% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCCHHH---HHHHHHHHHCCCCCHHHHHH--------HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CEECCCCCHHH
Q ss_conf 899989---99999997088999889999--------8658901145899999984132125674322-30000017888
Q T0617 37 GIGMTE---WRIISVLSSASDCSVQKISD--------ILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK-RTYAINLTEMG 104 (148)
Q Consensus 37 glt~~q---~~iL~~l~~~~~~t~~eLa~--------~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~-R~~~l~LT~~G 104 (148)
++++.+ +.||..|.+ +|.+.-||.+ ....+.+++-..+++|+++|||+......++ ..+.+.+|++|
T Consensus 7 ~~~p~~~l~l~iLglL~~-~p~~gYel~~~~~~~~~~~~~~s~g~iYp~L~kLe~~GlI~~~e~~~~~p~rkvY~IT~aG 85 (180)
T 2rkh_A 7 TLTPKEAVRLCALGTIAS-QPMRYSELAGSVRHFTSRIMGPSLELMGISIELLRYEGLVEAVDDGQGMEDDAMLAISAAG 85 (180)
T ss_dssp CCCHHHHHHHHHHHHHHH-SCEEHHHHHHHHHHHHHHHHSCCGGGTTCCTHHHHHTTSEECCC--------CEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECHHH
T ss_conf 768255899999999870-8999999999999983781089936399999999988997983323689876588866689
Q ss_pred HHHHHHHHHH---------HHHHHH--HHHHCCCHHHHHHHHH
Q ss_conf 9999999999---------999999--9985799989999999
Q T0617 105 QELYEVASDF---------AIEREK--QLLEEFEEAEKDQLFI 136 (148)
Q Consensus 105 ~~~~~~~~~~---------~~~~~~--~~~~~l~~ee~~~l~~ 136 (148)
++.+.+.... ...+.- .+++.++++++.....
T Consensus 86 r~~l~~wl~~~~~~~~~~~~~~~~lkl~f~~~l~~~~~~~~L~ 128 (180)
T 2rkh_A 86 RRELHSLLTARLRPGSDLSKLVVALKMRFLGLMEAEERAHQID 128 (180)
T ss_dssp HHHHHHHHSCCCCSSSCTHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9999999875245653321038999999986099999999999
No 88
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304}
Probab=97.49 E-value=0.00022 Score=48.12 Aligned_cols=76 Identities=24% Similarity=0.253 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHH---HC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 9998999999997---08-8999889999865890114589999998413212567432230000017888999999999
Q T0617 38 IGMTEWRIISVLS---SA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 38 lt~~q~~iL~~l~---~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
+......+|..|+ .+ ++.-++-||+..+-+-+.++++++.|++.|+|+.... +|.+.+.||++|+++...+..
T Consensus 10 l~eKp~~iLl~i~~~~~~~~~~Y~s~iaKeidstysh~~kiL~~~E~~gLV~fe~e---GRiK~I~LT~kG~~ia~~l~~ 86 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELE---GRTKIIRLTDKGQKIAQQIKS 86 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEC---CCEEEEEECCCHHHHHHHHHH
T ss_conf 74528999999999886268629999999809937999999999997698787615---837898747665999999999
Q ss_pred HHH
Q ss_conf 999
Q T0617 114 FAI 116 (148)
Q Consensus 114 ~~~ 116 (148)
...
T Consensus 87 i~~ 89 (95)
T 2qvo_A 87 IID 89 (95)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 89
>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=97.46 E-value=0.00029 Score=47.39 Aligned_cols=70 Identities=7% Similarity=0.210 Sum_probs=55.4
Q ss_pred HHCCCCHHHHHHHHHHHH---CCC--CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCEECCCCCHH
Q ss_conf 872899989999999970---889--99889999865890114589999998413212567432--23000001788
Q T0617 34 QKFGIGMTEWRIISVLSS---ASD--CSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED--KRTYAINLTEM 103 (148)
Q Consensus 34 ~~~glt~~q~~iL~~l~~---~~~--~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D--~R~~~l~LT~~ 103 (148)
++.|||..++.++..|.. .|. .++..||+.+++++.++.+.++.|+++|||++.....+ +..-.+.++|-
T Consensus 26 ~~LgLs~~e~~vll~l~~~~~~g~~~PS~~~La~~~g~s~~tv~~~l~~L~~kG~i~i~~~~~~~G~~~~~y~l~PL 102 (135)
T 2v79_A 26 KQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPL 102 (135)
T ss_dssp HHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEHHHHHHH
T ss_conf 66599999999999999998759879899999989695999999999999988997998654588765107875379
No 90
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=97.43 E-value=0.00076 Score=44.56 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=51.0
Q ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHH
Q ss_conf 99999999708-89998899998658901145899999984132125674322300000178889999999
Q T0617 42 EWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVA 111 (148)
Q Consensus 42 q~~iL~~l~~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~ 111 (148)
-..||..+... +|++.+|||+.++++++++.|+++.|++.|||.+. + |+| +.|+++-..+....
T Consensus 10 al~ILe~la~~~~~~~l~eia~~lgl~~st~~RlL~tL~~~g~l~~~--~-~~~---Y~lG~~~~~l~~~~ 74 (249)
T 1mkm_A 10 AFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK--K-DKR---YVPGYKLIEYGSFV 74 (249)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC--T-TSC---EEECTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC--C-CCC---EECCCCCCHHHHHH
T ss_conf 99999999728999899999998791999999999999977986405--7-754---42275222046666
No 91
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- binding, plasmid, transcription; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A
Probab=97.39 E-value=0.00045 Score=46.10 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH---HHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 9998999999997088999889999865890114589999998---4132125674322300000178889999999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE---KKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~---~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
++..+..++..+.+.| +.+.-|+.+++++|++|+.|++||+ ..|..| ....+.||+.|+.+++.+...
T Consensus 2 m~~~~L~~f~~v~~~~--s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R-------~~~~~~lT~~G~~l~~~a~~~ 72 (305)
T 3fxq_A 2 LKLQTLQALICIEEVG--SLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVR-------TKRGVSLTSFGQAFMKHARLI 72 (305)
T ss_dssp CHHHHHHHHHHHHHHS--CHHHHHHHTTCCHHHHHHHHHHHHHHHTSCSEEE-------CSSSEEECHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE-------CCCCEEECHHHHHHHHHHHHH
T ss_conf 9889999999999829--9999999989888999999999999859999998-------499158997375221343455
Q ss_pred HHHHHH
Q ss_conf 999999
Q T0617 115 AIEREK 120 (148)
Q Consensus 115 ~~~~~~ 120 (148)
...+.+
T Consensus 73 l~~~~~ 78 (305)
T 3fxq_A 73 VTESRR 78 (305)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 566999
No 92
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV}
Probab=97.31 E-value=0.00018 Score=48.70 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=56.7
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHH
Q ss_conf 987289998999999997088999889999865890114589999998413212567432230000017888
Q T0617 33 TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMG 104 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G 104 (148)
.+.++ .+.-..||..|.+ +++++++|++.++++++++|+.++.|++.|+|+.++ ++|.+++.+++..
T Consensus 15 ~kaL~-dp~Rl~Il~~L~~-~~~~v~ela~~l~is~stvS~HL~~L~~aGlV~~~r---~G~~~~Y~l~~~~ 81 (118)
T 2jsc_A 15 GRALA-DPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY---EGRQVRYALADSH 81 (118)
T ss_dssp HHHHS-SHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE---CSSSEEEEESSHH
T ss_pred HHHHC-CHHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE---ECCEEEEEECCHH
T ss_conf 99948-9999999999982-993899999998919999999999999889627999---8898999978199
No 93
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=97.23 E-value=0.0015 Score=42.57 Aligned_cols=74 Identities=16% Similarity=0.285 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH---HHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 99989999999970889998899998658901145899999984---132125674322300000178889999999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK---KYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~---gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
+...++.++..+.+.+ +.+.-|+.+++++|++|+.|++||+. .|.. |....+.||+.|+.++..+...
T Consensus 1 Md~~~l~~f~~v~~~~--s~s~AA~~l~isqsavS~~i~~LE~~lg~~Lf~-------R~~~~~~lT~~G~~l~~~a~~~ 71 (294)
T 1ixc_A 1 MEFRQLKYFIAVAEAG--NMAAAAKRLHVSQPPITRQMQALEADLGVVLLE-------RSHRGIELTAAGHAFLEDARRI 71 (294)
T ss_dssp CCHHHHHHHHHHHHHS--SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCBC------------CCBCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEE-------ECCCCEEECHHHHCCCCCCCHH
T ss_conf 9779999999999809--999999998888899999999999986999999-------8899427715031033343067
Q ss_pred HHHHHH
Q ss_conf 999999
Q T0617 115 AIEREK 120 (148)
Q Consensus 115 ~~~~~~ 120 (148)
...+.+
T Consensus 72 l~~~~~ 77 (294)
T 1ixc_A 72 LELAGR 77 (294)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 776556
No 94
>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8
Probab=97.23 E-value=3.6e-05 Score=53.38 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=55.8
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999997088999889999865890114589999998413212567432230000017888999999999999
Q T0617 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAI 116 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~ 116 (148)
+.+|..|+-..|+++++||+.+++|+++|+|+++.+.+.|+|+.... -..+|++|+.++..+..+..
T Consensus 23 ~~il~~lyy~~~l~q~eIA~~lg~Sr~~V~r~l~~ar~~GiV~i~~~-------gm~~t~~g~~~~~~~~~i~~ 89 (345)
T 2o0m_A 23 FQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIEPSKS-------GMTLTERGLEVYQGLELVMN 89 (345)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC-------CCCCCCCHHHHHHHHHHHCC
T ss_conf 99999998618989999998869988899999999998798899637-------75111210455543665237
No 95
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=97.22 E-value=0.00083 Score=44.32 Aligned_cols=67 Identities=24% Similarity=0.276 Sum_probs=53.5
Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHH
Q ss_conf 99987289998999999997088999889999865890114589999998413212567432230000017888999
Q T0617 31 AYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQEL 107 (148)
Q Consensus 31 ~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~ 107 (148)
.+.+..+ ++.-..||..|.. | .++.+|++.++++++++|..++.|.+.|+|+++. ..+.||+.|+.+
T Consensus 23 ~~~kALa-~p~Rl~IL~~L~~-~-~~~~el~~~l~is~stvs~HL~~L~~agLV~~~~-------~~y~lt~~G~~l 89 (96)
T 1y0u_A 23 RYNYAVT-NPVRRKILRMLDK-G-RSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-------ERWVVTDAGKIV 89 (96)
T ss_dssp HHHHHHS-CHHHHHHHHHHHT-T-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-------TEEEECTTTCCC
T ss_pred HHHHHHC-CHHHHHHHHHHCC-C-CHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC-------CEEEECCCCHHH
T ss_conf 9999838-9999999998445-4-1788999998939889999999998689589708-------879987467879
No 96
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=97.22 E-value=0.00037 Score=46.66 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 89999999970889998899998658901145899999984132125
Q T0617 41 TEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 41 ~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
....||..|..+|++|-.|||+.++++++|||++++.|++.|+|+..
T Consensus 17 N~~~il~~i~~~g~~SR~ela~~~gLs~~Tvs~iv~~L~~~glv~e~ 63 (406)
T 1z6r_A 17 NAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 99999999998599189999988795999999999999988988962
No 97
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=97.22 E-value=0.00017 Score=48.90 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHH-------CCCCCHHHHHHHHHHHHHHHHCCCC--CC-CCCEECCCCCHHHHHH
Q ss_conf 999899999999708899988999986-------5890114589999998413212567--43-2230000017888999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDIL-------GLDKAAVSRTVKKLEEKKYIEVNGH--SE-DKRTYAINLTEMGQEL 107 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l-------~i~~~~vs~~i~~L~~~gli~r~~~--~~-D~R~~~l~LT~~G~~~ 107 (148)
+...-+.||..|.+.+ +..-+|.+.+ .++.+++-..+++|+++|||+.... +. .++.+.+.||++|++.
T Consensus 42 ~el~~~yIL~lL~~~~-~yGYeI~q~L~~~~g~~~is~GtLYp~L~RLE~~GlI~s~~~e~e~~Gr~RK~Y~IT~~Gr~~ 120 (148)
T 2zfw_A 42 KELAVCYVLAVLRHED-SYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDR 120 (148)
T ss_dssp HHHHHHHHHHHHTTCC-EEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCST
T ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHHH
T ss_conf 1889999999980799-989999999999829977786437999999998898488853357889987389979989999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q T0617 108 YEVASDFAIERE 119 (148)
Q Consensus 108 ~~~~~~~~~~~~ 119 (148)
+.+....+..+.
T Consensus 121 L~el~~~W~~~~ 132 (148)
T 2zfw_A 121 SRDLAQLWERYL 132 (148)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 98
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=97.18 E-value=0.00021 Score=48.30 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 89999999970889998899998658901145899999984132125
Q T0617 41 TEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 41 ~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
..-.||..|..+||+|-.|||+.++++++|||++++.|.+.|+|+-.
T Consensus 40 N~~~Il~~i~~~g~iSR~eLa~~tgLS~~TVs~iv~~L~~~gli~e~ 86 (429)
T 1z05_A 40 NAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999999998599189999988796999999999999988968981
No 99
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=97.11 E-value=0.00075 Score=44.61 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=49.2
Q ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 72899989999999970889998899998658901145899999984132125
Q T0617 35 KFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
+..|...+..+|..|..++..+.++||+.+|++++++.+-+++|++.|.|++.
T Consensus 12 ~~~lD~~D~~IL~~L~~d~R~s~~eIA~~lglS~~tV~~Ri~rLe~~GvI~~~ 64 (171)
T 2ia0_A 12 EIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp --CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 57749999999999998489999999999890999999999999968974799
No 100
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=97.08 E-value=0.00082 Score=44.36 Aligned_cols=52 Identities=15% Similarity=0.306 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 8999899999999708899988999986589011458999999841321256
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
+|...+..+|..|..++..+.++||+.+|+|++++.+-+++|++.|.|.+..
T Consensus 4 ~lD~~D~~Il~~L~~d~R~s~~~ia~~lgls~~tv~~Ri~~L~~~giI~~~~ 55 (150)
T 2w25_A 4 ALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHCCCC
T ss_conf 5729999999999984899999999998909999999999984010102410
No 101
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural genomics, DNA-binding protein, PSI-2; 2.30A {Agrobacterium tumefaciens str}
Probab=97.08 E-value=0.0021 Score=41.68 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH---HHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 99989999999970889998899998658901145899999984---132125674322300000178889999999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK---KYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~---gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
+.+..+.+|..|.+.| +.+.-|+.++++.+++|+.|+.||+. -|+.|.+... ...-+.||+.|+.++..+...
T Consensus 24 ~~~~~l~ll~aV~~~G--S~t~AA~~L~iSq~avs~~i~~LE~~lg~~L~~R~~~~~--~~~G~~LT~~G~~ll~~~~~~ 99 (135)
T 2ijl_A 24 LGHGKVELMQLIAETG--SISAAGRAMDMSYRRAWLLVDALNHMFRQPVICSQRGGK--QGGGAALTVFGAELLERYRGM 99 (135)
T ss_dssp ESHHHHHHHHHHHHHS--CHHHHHHHTTCCHHHHHHHHHHHHHHBSSCSEEECCC--------EEECHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCC--CCCCEEECHHHHHHHHHHHHH
T ss_conf 5977999999999969--999998721998789999999999985983699854787--798523439999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q T0617 115 AIERE 119 (148)
Q Consensus 115 ~~~~~ 119 (148)
...+.
T Consensus 100 ~~~~~ 104 (135)
T 2ijl_A 100 EERMN 104 (135)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 102
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=97.05 E-value=0.00094 Score=43.96 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=48.2
Q ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 7289998999999997088999889999865890114589999998413212
Q T0617 35 KFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
.+-|...+..+|..|..+|..+.++||+.+|++.+++.+-+++|++.|.|..
T Consensus 3 ~~~lD~~D~~Il~~L~~d~R~s~~eia~~~g~s~~tv~~Ri~rL~~~GiI~~ 54 (152)
T 2cg4_A 3 NYLIDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp -CCCCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 5545799999999999858999999999988775899999999711252100
No 103
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=97.02 E-value=0.0012 Score=43.15 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 999899999999708899988999986589011458999999841321256
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
|...+..+|..|..+|..+.++||+.+|+|++++.+-+++|++.|.|....
T Consensus 1 lD~~D~~Il~~L~~d~r~s~~~ia~~~g~s~~tv~~Ri~rL~~~GvI~~~~ 51 (150)
T 2pn6_A 1 MDEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYY 51 (150)
T ss_dssp CCHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 988999999999983899999999998919999999999999689823416
No 104
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=96.99 E-value=0.0011 Score=43.43 Aligned_cols=55 Identities=29% Similarity=0.366 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9998999999997088999889999865890114589999998413212567432
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
|...+..+|..|..+|..+.++||+.+|++++++.+-+++|++.|.|.+....-|
T Consensus 2 lD~~D~~il~~L~~~~r~s~~~ia~~~gls~~~v~~Ri~~L~~~GvI~~~~~~i~ 56 (141)
T 1i1g_A 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKIN 56 (141)
T ss_dssp CCSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCCCCCC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 8889999999999858989999999989099999999999860696124158867
No 105
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=96.98 E-value=0.0011 Score=43.60 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 899989999999970889998899998658901145899999984132125
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
.|...+..+|..|..++..+.++||+.+|++++++.+-+++|++.|+|...
T Consensus 6 ~LD~~D~~IL~~L~~d~R~s~~~iA~~lgls~~tv~~Ri~rL~~~GvI~~~ 56 (151)
T 2dbb_A 6 KLDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 760999999999988599999999999896999999999998405521034
No 106
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP}
Probab=96.94 E-value=0.0012 Score=43.19 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=47.1
Q ss_pred HHHHHHHHHH-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 9999999970-889998899998658901145899999984132125674322300000178889999
Q T0617 42 EWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 42 q~~iL~~l~~-~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
-+.||..+.. .++++.+||++.++++++++.|+++.|++.||+++. ++ .+.|+++-..+-
T Consensus 16 al~ILe~l~~~~~~~t~~eia~~l~l~~st~~rlL~tL~~~g~l~~~----~~---~Y~lG~~~~~l~ 76 (257)
T 2g7u_A 16 GFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS----GG---RWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----TT---EEEECGGGHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECC----CC---EEEECCHHHHHH
T ss_conf 99999999857999899999999792999999999999970988805----99---588460476454
No 107
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.93 E-value=0.0011 Score=43.64 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=49.0
Q ss_pred HHHHHHHHHH-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHH
Q ss_conf 9999999970-889998899998658901145899999984132125674322300000178889999999
Q T0617 42 EWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVA 111 (148)
Q Consensus 42 q~~iL~~l~~-~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~ 111 (148)
-..||..+.. .++++.+||++.++++++++.|+++.|+..|||++. + +++ +.|+++=..+....
T Consensus 25 ~l~ILe~l~~~~~~lsl~eia~~lgl~kst~~RlL~tL~~~G~l~~~--~-~g~---Y~lG~~~~~l~~~~ 89 (260)
T 2o0y_A 25 VIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSR--A-DGS---YSLGPEMLRWVRLA 89 (260)
T ss_dssp HHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEC--T-TSC---EEECHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC--C-CCC---EECCHHHHHHHHHH
T ss_conf 99999999847999899999999791989999999999979978981--6-885---66278998887642
No 108
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=96.92 E-value=0.0011 Score=43.49 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9998999999997088999889999865890114589999998413212567
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
|...+..+|..|..++..+.++||+.+|++++++.+-+++|++.|.|.+...
T Consensus 3 lD~~D~~Il~~L~~n~R~s~~eia~~~g~s~~tv~~Ri~rL~~~GiI~~~~~ 54 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTL 54 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHCCE
T ss_conf 7889999999999848999999999988588899999998720124442134
No 109
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=96.92 E-value=0.0015 Score=42.60 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 8999899999999708899988999986589011458999999841321256
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
.|...+..+|..|.+++..+.++||+.+|+|++++.+-+++|++.|.|....
T Consensus 4 ~lD~~D~~IL~~L~~n~R~s~~~iA~~lg~S~~tv~~Ri~~L~~~GiI~~~~ 55 (151)
T 2cyy_A 4 PLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFT 55 (151)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 7709999999999974899999999998929899999999997334302117
No 110
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protein; 1.80A {Synechococcus elongatus pcc 7942}
Probab=96.92 E-value=0.00069 Score=44.85 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHH-------CCCCCHHHHHHHHHHHHHHHHCCCC--CCC-CCEECCCCCHHHHHHHHH
Q ss_conf 899999999708899988999986-------5890114589999998413212567--432-230000017888999999
Q T0617 41 TEWRIISVLSSASDCSVQKISDIL-------GLDKAAVSRTVKKLEEKKYIEVNGH--SED-KRTYAINLTEMGQELYEV 110 (148)
Q Consensus 41 ~q~~iL~~l~~~~~~t~~eLa~~l-------~i~~~~vs~~i~~L~~~gli~r~~~--~~D-~R~~~l~LT~~G~~~~~~ 110 (148)
.-+.||..|.+.+ ...-+|.+.+ .++.+++-..+++|+++|||+.... +.+ +..+.+.||++|++.+.+
T Consensus 35 ~~~~IL~~L~~~~-~yGYeI~q~i~~~~g~~~is~GtLYp~L~rLe~~GlI~s~~~~~~~~Gr~RK~Y~IT~~Gr~~L~~ 113 (138)
T 2e1n_A 35 AVCYVLAVLRHED-SYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRD 113 (138)
T ss_dssp HHHHHHHHHTTSC-EEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHH
T ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHH
T ss_conf 9999999981599-889999999999839967687541499999998898488854457789986289989889999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q T0617 111 ASDFAIEREKQ 121 (148)
Q Consensus 111 ~~~~~~~~~~~ 121 (148)
....+..+...
T Consensus 114 l~~~W~~~~~~ 124 (138)
T 2e1n_A 114 LAQLWERYLSS 124 (138)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
T ss_conf 99999999960
No 111
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=96.92 E-value=0.0064 Score=38.39 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 99989999999970889998899998658901145899999984132125674322-30000017888999999999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK-RTYAINLTEMGQELYEVASDFAI 116 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~-R~~~l~LT~~G~~~~~~~~~~~~ 116 (148)
.+..|..+...+.+.| +.+.-|+.+++++|++|+.|++||+.==+. --+| +.+.+.+|++|+.++..+.....
T Consensus 4 ~~l~~L~~F~~v~~~g--s~s~AA~~L~itqsavS~~i~~LE~~lg~~----Lf~R~~~r~l~lT~~G~~l~~~a~~~l~ 77 (306)
T 3fzv_A 4 YTLRQLKYFVTTVECG--SVAEASRKLYIAQPSISTAVKGLEESFGVQ----LFIRHHAQGVSLTPAGARFYRKAQELLR 77 (306)
T ss_dssp CCHHHHHHHHHHHHSS--SHHHHHHHHTCCC-CHHHHHHHHHHHC-CC----CC---------CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCE----EEEECCCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 9899999999999809--999999998978889999999999984997----9998899853548768842234322210
Q ss_pred HHHH
Q ss_conf 9999
Q T0617 117 EREK 120 (148)
Q Consensus 117 ~~~~ 120 (148)
...+
T Consensus 78 ~~~~ 81 (306)
T 3fzv_A 78 MAHE 81 (306)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 3678
No 112
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=96.91 E-value=0.0021 Score=41.69 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 8999899999999708899988999986589011458999999841321256
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
.|...+..+|..|..++..+.++||+.+|++++++.+-+++|++.|.|+...
T Consensus 24 ~LD~~D~~IL~~L~~d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GiI~~~~ 75 (171)
T 2e1c_A 24 PLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFT 75 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCC
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8479999999999983899999999998909999999999998489824699
No 113
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled coil, structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.90 E-value=0.0033 Score=40.33 Aligned_cols=66 Identities=24% Similarity=0.188 Sum_probs=52.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999970889998899998658901145899999984132125674322300000178889999999999999
Q T0617 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIE 117 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~ 117 (148)
+.+|..+ .++++.+.|....+++-..+...++.|.+.|||+.. ...+.+|++|.+++.........
T Consensus 11 ~dIL~~~--~~~~~~T~i~~~~nLs~~~~~~~l~~L~~~GLIe~~-------~~~y~lTekG~~~L~~l~~~~~~ 76 (95)
T 1r7j_A 11 QAILEAC--KSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE-------GKQYMLTKKGEELLEDIRKFNEM 76 (95)
T ss_dssp HHHHHHH--TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEC-------CCEEEECHHHHHHHHHHHHHHHH
T ss_conf 9999998--669986488998099999999999999988892526-------98479875189999999999999
No 114
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=96.90 E-value=0.0016 Score=42.36 Aligned_cols=54 Identities=22% Similarity=0.323 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 998999999997088999889999865890114589999998413212567432
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
...+..+|..|..++..+.++||+.+|++++++.+-+++|++.|.|.+...--|
T Consensus 2 D~~D~~IL~~L~~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GiI~~~~~~id 55 (162)
T 3i4p_A 2 DRLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLD 55 (162)
T ss_dssp CHHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 879999999999858999999999989199999999999983797463699865
No 115
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=96.90 E-value=0.0014 Score=42.90 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=49.1
Q ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 72899989999999970889998899998658901145899999984132125
Q T0617 35 KFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
...|...+..+|..|..++-.+.++||+.+|++++++.+-+++|++.|.|...
T Consensus 5 ~~~lD~~D~~Il~~L~~d~R~s~~eia~~~gls~~tv~~Ri~~L~~~GiI~~~ 57 (162)
T 2p5v_A 5 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 89818999999999998389999999999891999999999999857924788
No 116
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP}
Probab=96.89 E-value=0.00034 Score=46.89 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=45.7
Q ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHH
Q ss_conf 99999999708-8999889999865890114589999998413212567432230000017888999
Q T0617 42 EWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQEL 107 (148)
Q Consensus 42 q~~iL~~l~~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~ 107 (148)
-+.||..+... ++++.+|||+.++++++++.|+++.|++.|||++. +++ +.|+++-..+
T Consensus 23 al~IL~~~~~~~~~l~l~eia~~lgl~kst~~RlL~tL~~~G~l~r~----~~~---Y~lG~~~~~l 82 (265)
T 2ia2_A 23 GLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATD----GSA---FWLTPRVLEL 82 (265)
T ss_dssp HHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES----SSE---EEECGGGGGT
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC----CCE---EEECHHHHHH
T ss_conf 99999999737999799999999794999999999999975986765----994---6855357678
No 117
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein structure initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=96.87 E-value=0.0035 Score=40.18 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99989999999970889998899998658901145899999984132125674322300000178889999999999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIE 117 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~ 117 (148)
+...+..++..+.+++ +.+.-|+.+++++|++|+.|++||+.==+. --+|....+.||+.|+.++..+......
T Consensus 10 ~dl~~L~~f~~v~e~~--S~s~AA~~L~vsq~avS~~I~~LE~~lg~~----LF~R~~~~~~lT~~G~~l~~~~~~~l~~ 83 (310)
T 2esn_A 10 LDLNLLLVFDALYRHR--NVGTAASELAISASAFSHALGRLRQGLDDE----LFLRQGNRMQPTQRAEHLAAAVAAALRA 83 (310)
T ss_dssp SCTTHHHHHHHHHHHS--SHHHHHHHHTCCHHHHHHHHHHHHHHHTSC----CEEEETTEEEECHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCE----EEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999809--999999997879899999999999995994----8998799874566899999999999986
Q ss_pred HHHH
Q ss_conf 9999
Q T0617 118 REKQ 121 (148)
Q Consensus 118 ~~~~ 121 (148)
+.+.
T Consensus 84 ~~~~ 87 (310)
T 2esn_A 84 LGEG 87 (310)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 6667
No 118
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=96.86 E-value=0.00066 Score=44.99 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=43.7
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC---CCEECCCCCH
Q ss_conf 9999997088999889999865890114589999998413212567432---2300000178
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED---KRTYAINLTE 102 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D---~R~~~l~LT~ 102 (148)
.||..|.+ +|+|-.|||+.++++++|||++++.|.+.|+|+-...... |+...+.+.+
T Consensus 24 ~il~~l~~-gpiSR~eLa~~tgLs~~tvs~iv~~L~~~gli~e~~~~~~~~GR~~~~l~~n~ 84 (380)
T 2hoe_A 24 RILKRIMK-SPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISP 84 (380)
T ss_dssp CSHHHHHH-SCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECG
T ss_pred HHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEECC
T ss_conf 99999980-99499999988796999999999999988988981878999799982699958
No 119
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=96.86 E-value=0.0015 Score=42.55 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHH----CC-CCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 899989999999970----88-9998899998658-9011458999999841321256743
Q T0617 37 GIGMTEWRIISVLSS----AS-DCSVQKISDILGL-DKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 37 glt~~q~~iL~~l~~----~~-~~t~~eLa~~l~i-~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
.||..|-.+|.+|.+ +| +.|+.|||+.+|+ +++++.+.++.|+++|++++.+...
T Consensus 3 ~LT~rq~~il~~I~~~~~~~g~~PS~~EIa~~~GikS~stv~~~l~~L~~~G~l~~~~~~~ 63 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGAS 63 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSSSS
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 4399999999999999998298976999999829997378999875134228511014775
No 120
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=96.79 E-value=0.0028 Score=40.75 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH---HHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999984---13212567432230000017888999999999
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK---KYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~---gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
.|+..+..++..+.++| +.+.-|+.+++|+|++|+.|++||+. .|..| .+.+.+|+.|+.++..+..
T Consensus 5 ~ld~~~L~~f~av~~~g--S~s~AA~~L~iSq~avS~~i~~LE~~lg~~Lf~R--------~r~~~lT~~G~~ll~~a~~ 74 (303)
T 3isp_A 5 QLDGPQLAALAAVVELG--SFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVR--------EKPCRATTAGIPLLRLAAQ 74 (303)
T ss_dssp CCCSHHHHHHHHHHHHT--CHHHHHTTTTCCHHHHHHHHHHHHHHHTSCCEEC--------SSSCEECGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEC--------CCCCEECCCHHHHHHHHHH
T ss_conf 88999999999999809--9999999989698999999999999829412885--------9896668533200467877
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999998579
Q T0617 114 FAIEREKQLLEEF 126 (148)
Q Consensus 114 ~~~~~~~~~~~~l 126 (148)
......+ ....+
T Consensus 75 ~l~~~~~-~~~~~ 86 (303)
T 3isp_A 75 TALLESE-ALAEM 86 (303)
T ss_dssp HHHHHHH-HTTTT
T ss_pred HHHHHHH-HHHHH
T ss_conf 7778887-77665
No 121
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134}
Probab=96.71 E-value=0.03 Score=33.98 Aligned_cols=89 Identities=8% Similarity=0.063 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHH-HHHHHHHC-CCHHHH
Q ss_conf 9998899998658901145899999984132125674322300000178889999999999999-99999857-999899
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIE-REKQLLEE-FEEAEK 131 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~-~~~~~~~~-l~~ee~ 131 (148)
.++..+||+.+|++++.|-..+.+|+..|||+..+. +....-.+|.....-+.++...... ........ .++++.
T Consensus 39 ~L~e~~La~~lgVSRtpVREAL~~L~~eGlV~~~p~---~G~~V~~~~~~~~~ei~~~R~~lE~~~~~~a~~~~~~~~~~ 115 (222)
T 3ihu_A 39 RLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH---RGAVIRRLSLQETLDVLDVAERMTGLLARAATRGSGNQPQV 115 (222)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST---TCEEECCCCHHHHHHHHHHHHHHHHHHHHHHGGGTTCHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC---CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 669999999989888999999999997898476358---82599740144320147888776789999998855999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999988
Q T0617 132 DQLFILLKKLRNKV 145 (148)
Q Consensus 132 ~~l~~~L~~l~~~l 145 (148)
..+...+..+....
T Consensus 116 ~~L~~~~~~~~~~~ 129 (222)
T 3ihu_A 116 QALRASVQALVAAE 129 (222)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999988
No 122
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=96.68 E-value=0.00019 Score=48.51 Aligned_cols=64 Identities=14% Similarity=0.243 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC---CCEECCCCCHH
Q ss_conf 998999999997088999889999865890114589999998413212567432---23000001788
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED---KRTYAINLTEM 103 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D---~R~~~l~LT~~ 103 (148)
++....||..|. ++|+++++|++.++++++++|+.++.|++.|+|+...+..- +..+++.+|+.
T Consensus 11 ~~~R~~Il~~L~-~~~~~~~ela~~~~~s~~~vs~HL~~L~~~glv~~~~~~~~~~g~~~kyy~l~~~ 77 (232)
T 2qlz_A 11 NKVRRDLLSHLT-CMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIA 77 (232)
T ss_dssp SHHHHHHHHHHT-TTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCC
T ss_pred CHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCC
T ss_conf 999999999998-1999799999998919999999999999889849984056778876448998588
No 123
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=96.43 E-value=0.0018 Score=42.05 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=40.5
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99970889998899998658901145899999984132125674322
Q T0617 47 SVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 47 ~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
..++-.+++||.|||+.+++|+++|||++++-.+.|+|+...+....
T Consensus 14 A~lYY~~gltQ~eIA~~lgiSR~~VsRlL~~Ar~~GiV~I~I~~~~~ 60 (315)
T 2w48_A 14 AQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDYN 60 (315)
T ss_dssp HHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCC
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_conf 99998349999999998698999999999999976907999948985
No 124
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=96.40 E-value=0.024 Score=34.63 Aligned_cols=76 Identities=11% Similarity=0.081 Sum_probs=47.6
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHH------HHHHHHHHH-HHHCCCH
Q ss_conf 988999986589011458999999841321256743223000001788899999999------999999999-9857999
Q T0617 56 SVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS------DFAIEREKQ-LLEEFEE 128 (148)
Q Consensus 56 t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~------~~~~~~~~~-~~~~l~~ 128 (148)
+..+||+.+++++++|.+.++.|+..|||.+.+. |...+. +.......... ......... ..-+++.
T Consensus 30 se~eLa~~~~VSr~tVR~Al~~L~~~GlI~~~~g----~Gt~V~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~ 103 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLLVEAGILYKKRG----IGMFVS--AQAPALIRERRDAAFAATYVAPLIDESIHLGFTR 103 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETT----TEEEEC--TTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC----CEEEEC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 8999999969789999999999998890799638----636889--9987999999999999999999999999859799
Q ss_pred HHHHHHHHH
Q ss_conf 899999999
Q T0617 129 AEKDQLFIL 137 (148)
Q Consensus 129 ee~~~l~~~ 137 (148)
+++..+...
T Consensus 104 ~el~~l~e~ 112 (129)
T 2ek5_A 104 ARIHALLDQ 112 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 125
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=96.40 E-value=0.024 Score=34.60 Aligned_cols=77 Identities=12% Similarity=0.020 Sum_probs=50.7
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHH--HHHHHHHHHHHHHH-HHHCCCHHHH
Q ss_conf 99889999865890114589999998413212567432230000017888999--99999999999999-9857999899
Q T0617 55 CSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQEL--YEVASDFAIEREKQ-LLEEFEEAEK 131 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~--~~~~~~~~~~~~~~-~~~~l~~ee~ 131 (148)
.+..+||+.+++++++|.+.++.|+..|+|++.+. +...+...+..... ..........+... ...+++.+++
T Consensus 36 Ps~~~La~~~~VSr~tVr~Al~~L~~~Glv~~~~g----~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i 111 (126)
T 3by6_A 36 PSVRETALQEKINPNTVAKAYKELEAQKVIRTIPG----KGTFITGNTASVKNSNQNRLLADLSQVIAELIKSGVKGERI 111 (126)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT----TEEEECSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC----CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 55999999979898999999999998893799748----15898189615448899999999999999999959899999
Q ss_pred HHHH
Q ss_conf 9999
Q T0617 132 DQLF 135 (148)
Q Consensus 132 ~~l~ 135 (148)
..+.
T Consensus 112 ~~~~ 115 (126)
T 3by6_A 112 KKIV 115 (126)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 126
>1xd7_A YWNA; structural genomics, protein structure initiative, winged helix DNA binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=96.37 E-value=0.0052 Score=39.03 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=49.8
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 9999999970889998899998658901145899999984132125674322300000178889999
Q T0617 42 EWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 42 q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
..++|.+|..+++.+..+||+.++++++.+.++++.|.+.|||+..+.++ + .. +.-.|+-..+.
T Consensus 11 Al~~L~~La~~~~~ts~~IAe~~~i~~~~l~kIl~~L~kaglv~S~~G~g-G-g~-L~k~p~~Itl~ 74 (145)
T 1xd7_A 11 AIHILSLISMDEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVP-G-AS-LKKDPADISLL 74 (145)
T ss_dssp HHHHHHHHHTCSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSS-S-CE-ESSCGGGCBHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC-C-CE-ECCCHHHEEHH
T ss_conf 99999998549998999999886939999999999998879077368998-9-72-35888881599
No 127
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ...
Probab=96.33 E-value=0.023 Score=34.70 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9998899998658901145899999984132125
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
++|+.+||..+|+++.+++|.+++|++.|+|++.
T Consensus 217 ~lt~~~iA~~lG~sr~tvsR~l~~L~~~glI~~~ 250 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 250 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 6899999999799899999999999968979976
No 128
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=96.32 E-value=0.0074 Score=37.97 Aligned_cols=72 Identities=8% Similarity=-0.058 Sum_probs=59.5
Q ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 72899989999999970889998899998658901145899999984132125674322300000178889999
Q T0617 35 KFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
...++..+..+|..+..++.+|..++++.++++..++.+.+++|+++|+|++.... +|...+.+++......
T Consensus 425 ~~~l~~~~~~iL~~l~~~~~it~~ela~~l~~s~~~v~~~L~~L~~~glie~~~~~--~~~~~y~l~~~~~~~~ 496 (583)
T 3lmm_A 425 ARQDDYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLII--AHDGVWLLGNACREIL 496 (583)
T ss_dssp GGTTCHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEE--EETTEEEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCC--CCCCEEEECHHHHHHH
T ss_conf 45777679999999986665679999988589999999999999977982414666--6686476467776541
No 129
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV}
Probab=96.31 E-value=0.018 Score=35.38 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9998899998658901145899999984132125
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
++|+.+||..+|+++.+++|.+++|++.|+|+..
T Consensus 187 ~lt~~~iA~~lg~sr~tv~R~l~~l~~~g~I~~~ 220 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 7799999989798899999999999978989964
No 130
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} SCOP: a.4.5.4 b.82.3.2
Probab=96.29 E-value=0.036 Score=33.41 Aligned_cols=33 Identities=9% Similarity=0.222 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 999889999865890114589999998413212
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
++|+.+||..+|+++.+++|++++|+++|+|+.
T Consensus 180 ~~t~~~lA~~~g~sr~tvsr~l~~L~~~glI~~ 212 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLAL 212 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 610999998979999999999999998896997
No 131
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=96.19 E-value=0.018 Score=35.38 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9998899998658901145899999984132125
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
++|+.+||..+|+++.++||.++.|.+.|+|+..
T Consensus 175 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 6689999989699899999999999978989972
No 132
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=96.14 E-value=0.02 Score=35.10 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9998899998658901145899999984132125
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
++|+.+||..+|+++.+++|.+++|++.|+|...
T Consensus 178 ~~t~~~lA~~lg~sr~tvsr~l~~L~~~g~I~~~ 211 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD 211 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 8889999888699899999999999978979971
No 133
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum}
Probab=96.08 E-value=0.0089 Score=37.44 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=43.4
Q ss_pred HHHHHHHHHHC--CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999708--89998899998658901145899999984132125674322
Q T0617 42 EWRIISVLSSA--SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 42 q~~iL~~l~~~--~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
..++|.+|..+ .+++..+||+.++++++.+.++++.|.+.|+|+..+.+.-+
T Consensus 14 Al~~L~~La~~~~~~~ss~eIA~~~~i~~~~l~kIl~~L~kaGlv~S~rG~~GG 67 (162)
T 3k69_A 14 AVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGG 67 (162)
T ss_dssp HHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCE
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999998489987369999998890999999999999876754003567886
No 134
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=96.06 E-value=0.035 Score=33.47 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9998899998658901145899999984132125
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
++|..+||..+|+++.+++|++++|++.|+|+..
T Consensus 177 ~lt~~~LA~~lgisr~tvsr~l~~L~~~g~I~~~ 210 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKK 210 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 8689999989799999999999999988989974
No 135
>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus}
Probab=96.03 E-value=0.02 Score=35.10 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9998899998658901145899999984132125
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
++|+.+||..+|+++.++||.++.|++.|+|+..
T Consensus 139 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~glI~~~ 172 (195)
T 2zdb_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIATA 172 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 8889999988799799999999999988989970
No 136
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=96.02 E-value=0.025 Score=34.49 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9998899998658901145899999984132125
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
++|+.+||+.+|+++.+|+|.++.|++.|+|++.
T Consensus 163 ~lt~~eLA~~lG~sretv~r~L~~L~~~g~I~~~ 196 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQ 196 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEEC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 2889999998499899999999999988989987
No 137
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.4 b.82.3.2
Probab=95.98 E-value=0.026 Score=34.37 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHH---C--C----CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 899989999999970---8--8----99988999986589011458999999841321256
Q T0617 37 GIGMTEWRIISVLSS---A--S----DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 37 glt~~q~~iL~~l~~---~--~----~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
......-++...|.. . + +.++.+||..+|+++.+++|.+++|++.|+|+...
T Consensus 160 ~~~~~~~Rl~~~L~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tv~r~l~~L~~~giI~~~~ 220 (232)
T 1zyb_A 160 PTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHR 220 (232)
T ss_dssp CCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEET
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 0003777899999998645155555776999999897989999999999999889899729
No 138
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=95.91 E-value=0.018 Score=35.44 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=49.6
Q ss_pred HHHCC--CCHHHHHHHHHHHHCCCCCHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98728--999899999999708899988999986-----5890114589999998413212567432
Q T0617 33 TQKFG--IGMTEWRIISVLSSASDCSVQKISDIL-----GLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 33 ~~~~g--lt~~q~~iL~~l~~~~~~t~~eLa~~l-----~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
.++.| +|.....||.+|...+..++.+|.+.+ .++++||-|.++.|++.|+|.+...+++
T Consensus 10 Lr~~glr~T~~R~~Il~~L~~~~h~ta~eI~~~l~~~~~~i~~~TVYR~L~~L~~~gii~~i~~~~~ 76 (145)
T 3eyy_A 10 LRQRGYRLTPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHG 76 (145)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGG
T ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9986998699999999999727998999999999975888654889999999997496798412688
No 139
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli}
Probab=95.91 E-value=0.0014 Score=42.90 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 89998999999997088999889999865890114589999998413212
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
.|...+..+|..|..+|..+.++||+.+|++++++.+-+++|++.|.|..
T Consensus 10 ~LD~~D~~Il~~L~~d~R~s~~eia~~lglS~~tv~~Ri~rL~~~GiI~~ 59 (163)
T 2gqq_A 10 DLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp -CCSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 35499999999999748989999999989499999999999984793468
No 140
>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=95.90 E-value=0.0096 Score=37.23 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=39.7
Q ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 89999999970-88999889999865890114589999998413212
Q T0617 41 TEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 41 ~q~~iL~~l~~-~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
.+..+|..|.. .++++.++||+.+++|++|+-|-++.|++.|++.+
T Consensus 22 R~~~Il~~L~~~~~~vt~~eLa~~l~VS~~TIrrDl~~L~~~G~~i~ 68 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999998699776999999979799999999999997799789
No 141
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=95.79 E-value=0.023 Score=34.71 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHH
Q ss_conf 89998999999997088999889999865890114589999998413212567432230000017888999
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQEL 107 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~ 107 (148)
..+.....++..+..+|..+..++++.++++++|+++.++.|++.|+++...+ +|.. +++.+.=.++
T Consensus 294 ~~~~~~~~ll~~l~~~p~~t~~~~~~~~~vS~~Ta~~~l~~L~~~GiL~~~~~---gr~~-~y~~~~~l~i 360 (373)
T 2qc0_A 294 LPKIYSHELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQS---GKEK-LFVHPKFVTL 360 (373)
T ss_dssp CTTTCCHHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC-----CCSC-EEECHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC---CCCE-EEEHHHHHHH
T ss_conf 26468999999999889824999999869799999999999997898798379---9861-6556999999
No 142
>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656}
Probab=95.78 E-value=0.11 Score=30.17 Aligned_cols=34 Identities=12% Similarity=0.369 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9998899998658901145899999984132125
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
++|+.+||..+|+++.+++|.++.|++.|+|...
T Consensus 169 ~~t~~~lA~~lg~sr~tvsr~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 8889999999799999999999999988989972
No 143
>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A*
Probab=95.74 E-value=0.055 Score=32.17 Aligned_cols=86 Identities=10% Similarity=0.070 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHH-HHHHHHHHCC-CHHHH
Q ss_conf 999889999865890114589999998413212567432230000017888999999999999-9999998579-99899
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAI-EREKQLLEEF-EEAEK 131 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~-~~~~~~~~~l-~~ee~ 131 (148)
.++..+||+.+|++++.|-..+.+|+..|+|+..+.. ....-.++++-..-+.++..... ......+..+ ++++.
T Consensus 43 ~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~p~~---G~~V~~~~~~~i~e~~~~R~~lE~~a~~~a~~~~~~~e~l 119 (226)
T 3dbw_A 43 KLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRV---GFFVTDVDEKFIRETIETRIMMEVFCLENYFDKIAGSEEL 119 (226)
T ss_dssp BCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTT---EEEECCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 7799999999891999999999999978976853698---6545531245556678889989999999999852677899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q T0617 132 DQLFILLKKLR 142 (148)
Q Consensus 132 ~~l~~~L~~l~ 142 (148)
..+...+..+.
T Consensus 120 ~~l~~~~~~~~ 130 (226)
T 3dbw_A 120 LEIKGEIDDVA 130 (226)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999988
No 144
>2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=95.65 E-value=0.052 Score=32.34 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 999889999865890114589999998413212
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
++|+.+||..+|+++.+++|.+++|.+.|+|++
T Consensus 167 ~lt~~~iA~~lg~sr~tvsr~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 724999999979989999999999998899997
No 145
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=95.56 E-value=0.057 Score=32.08 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9998899998658901145899999984132125
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
++++.+||..+|+++.+++|.+++|++.|+|+..
T Consensus 164 ~~t~~~lA~~lg~sr~tvsr~l~~L~~~glI~~~ 197 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 7799999989799999999999999988989977
No 146
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=95.55 E-value=0.056 Score=32.15 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=37.2
Q ss_pred HCCCCHHHHHHHHHH---HHC--C------CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 728999899999999---708--8------99988999986589011458999999841321
Q T0617 35 KFGIGMTEWRIISVL---SSA--S------DCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
Q Consensus 35 ~~glt~~q~~iL~~l---~~~--~------~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~ 85 (148)
........-++...| +.. + ++|+.+||..+|+++.+++|++++|.+.|++.
T Consensus 148 ~~~~~~~~~Rl~~~L~~l~~~~~~~~~i~l~lt~~~lA~~lgisr~tvsr~L~~L~~~gii~ 209 (237)
T 3fx3_A 148 QLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGVTV 209 (237)
T ss_dssp HCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTEEC
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 88159999999999999887404566678998999999997988999999999999789689
No 147
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.53 E-value=0.016 Score=35.83 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=42.9
Q ss_pred HHHHHHHHHC---CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999708---89998899998658901145899999984132125674322
Q T0617 43 WRIISVLSSA---SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 43 ~~iL~~l~~~---~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
.++|..|+.+ ++++..+||+..+++++.+.+++..|.+.|+|+..+.+.-+
T Consensus 30 lral~~LA~~~~~~~vs~~~IAe~~~ip~~~L~KIl~~L~kaGlv~S~rG~~GG 83 (159)
T 3lwf_A 30 LTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGG 83 (159)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCE
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 999999980889981959999988790999999999998418968844888787
No 148
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcriptional regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=95.46 E-value=0.0019 Score=41.98 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH---HHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9989999999970889998899998658901145899999984---1321256743223000001788899999999999
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK---KYIEVNGHSEDKRTYAINLTEMGQELYEVASDFA 115 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~---gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~ 115 (148)
+..++.++..+.+.|. .+.-|+.+++++|+||+.|++||+. .|+.| ....+.||+.|+.++..+....
T Consensus 2 ~l~~l~~f~~v~~~gs--~s~AA~~L~vtqsavS~~i~~LE~~lg~~Lf~R-------~~~~~~lT~~G~~l~~~a~~il 72 (312)
T 2h9b_A 2 ELRHLRYFVAVVEEQS--FTKAADKLCIAQPPLSRQIQNLEEELGIQLLER-------GSRPVKTTPEGHFFYQYAIKLL 72 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHCCC--HHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE-------CCCCEEECHHHHHCCHHHHHHH
T ss_conf 7799999999998199--999999988888999999999999859987998-------7997279875763030356679
Q ss_pred HHHHH
Q ss_conf 99999
Q T0617 116 IEREK 120 (148)
Q Consensus 116 ~~~~~ 120 (148)
....+
T Consensus 73 ~~~~~ 77 (312)
T 2h9b_A 73 SNVDQ 77 (312)
T ss_dssp -----
T ss_pred HHHHH
T ss_conf 99999
No 149
>3l09_A Putative transcriptional regulator; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.81A {Jannaschia SP}
Probab=95.44 E-value=0.01 Score=37.02 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=55.9
Q ss_pred CHHHHHHHHHH-----HHCCC-CC---HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHH
Q ss_conf 99899999999-----70889-99---88999986589011458999999841321256743223000001788899999
Q T0617 39 GMTEWRIISVL-----SSASD-CS---VQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
Q Consensus 39 t~~q~~iL~~l-----~~~~~-~t---~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~ 109 (148)
...-+.++..+ ...|+ +. ..++.+.+||+.++|-..|.+|.++|+++..+ .+|...+.||+.|++.+.
T Consensus 21 p~ra~SLivTi~Gd~~~~~gg~i~~~~Li~ll~~lGi~~~avRtAlsRL~~~GwL~~~r---~GR~s~Y~Lt~~g~~~~~ 97 (266)
T 3l09_A 21 PLKLWSVLVTCLGDVSRDGVIEVSGVALSSFVERMGLQPQAMRVALHRLKRDGWVESRR---LGRVGFHRLSDSALTQTR 97 (266)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEECHHHHHHHH
T ss_pred CCCCCEEHHHHHHHHHCCCCCEECHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEE---CCCCCEEEECHHHHHHHH
T ss_conf 98751202635667753689815299999999984999047999999998718645320---366330457788999987
Q ss_pred HHHHH
Q ss_conf 99999
Q T0617 110 VASDF 114 (148)
Q Consensus 110 ~~~~~ 114 (148)
+..+.
T Consensus 98 ~a~~R 102 (266)
T 3l09_A 98 AVAGR 102 (266)
T ss_dssp TTHHH
T ss_pred HHHCC
T ss_conf 43300
No 150
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=95.42 E-value=0.021 Score=34.94 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 2899989999999970889998899998658901145899999984132125674322300000178889999
Q T0617 36 FGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
-.|+.+...+|.+|+-+.|+|..+|.+.-|++. +.+|+.|..+|||+.......+|...+..|++-.+.+
T Consensus 96 ~~LS~aaLETLAIIAY~QPITr~eIe~IRGv~s---~~~l~~LlergLI~~~Gr~~~grp~lY~TT~~FL~~F 165 (219)
T 2z99_A 96 TKLTRAALETLAVVAYRQPVTRARVSAVRGVNV---DAVMRTLLARGLITEVGTDADTGAVTFATTELFLERL 165 (219)
T ss_dssp CCCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCC---HHHHHHHHHTTSEEEEEECTTTCCEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCH---HHHHHHHHHCCCEEECCCCCCCCCEEEEEHHHHHHHC
T ss_conf 776999999999999749837999999829775---8999999988998743858999980552449999884
No 151
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, PSI, protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.40 E-value=0.04 Score=33.13 Aligned_cols=59 Identities=12% Similarity=0.221 Sum_probs=45.3
Q ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHH
Q ss_conf 99999997088--999889999865890114589999998413212567432230000017888
Q T0617 43 WRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMG 104 (148)
Q Consensus 43 ~~iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G 104 (148)
.++|.+|..++ +++..+||+..+++++.+.++++.|.+.|+|+..+.+ + ...+.-.|+-
T Consensus 17 l~~L~~La~~~~~~~s~~~IA~~~~i~~~~l~kIl~~L~kaglv~S~rG~--G-Gy~L~r~p~~ 77 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP--G-GAGLLKDLHE 77 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----C-CEEESSCGGG
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCC--C-CCEECCCHHH
T ss_conf 99999998588997759999999794999999999999767968864699--8-8620378533
No 152
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=95.39 E-value=0.061 Score=31.86 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=49.3
Q ss_pred HHCCCCHHHHHHHHHHHH-CCCCCHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 872899989999999970-8899988999986-----5890114589999998413212567432
Q T0617 34 QKFGIGMTEWRIISVLSS-ASDCSVQKISDIL-----GLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 34 ~~~glt~~q~~iL~~l~~-~~~~t~~eLa~~l-----~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
+.+-+|+....||..|.. .++.|+.+|...+ .++++||-|.++.|++.|+|.+...++.
T Consensus 16 ~G~r~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~~~gii~~~~~~~~ 80 (145)
T 2fe3_A 16 TGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDA 80 (145)
T ss_dssp TTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTS
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 69985999999999997589999899999998850789888899999999984791799994898
No 153
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=95.38 E-value=0.0021 Score=41.69 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=48.2
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHH
Q ss_conf 999999708899988999986589011458999999841321256743223000001788
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEM 103 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~ 103 (148)
.++.++..+|+++.++|++.++++++++++.+++|++.|+|++.. .+|...+.|.+.
T Consensus 520 ~Il~~l~~~g~it~~eiae~lgls~~~v~~~L~~L~~~G~I~~~G---~gr~~~Y~L~e~ 576 (583)
T 3lmm_A 520 AAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERVVAVG---GGRSRRYRLVEL 576 (583)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC---CCCCEEEEEEEE
T ss_conf 999999977993999999997949999999999999889779856---788618999751
No 154
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=95.29 E-value=0.071 Score=31.43 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99988999986589011458999999841321256
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
++|+.+||..+++++.+++|.+++|.+.|+|+...
T Consensus 146 ~lt~~~iA~~lg~sr~tvsr~l~~l~~~g~I~~~~ 180 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIRSGY 180 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 87899999897988999999999999889999639
No 155
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A*
Probab=95.29 E-value=0.0023 Score=41.35 Aligned_cols=73 Identities=22% Similarity=0.355 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH---HHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9989999999970889998899998658901145899999984---1321256743223000001788899999999999
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK---KYIEVNGHSEDKRTYAINLTEMGQELYEVASDFA 115 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~---gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~ 115 (148)
+..++.++..+.+.| +.+.-|+.+++++|++|+.|++||+. .|+. |..+.+.||+.|+.++..+....
T Consensus 2 ~l~~l~~f~~v~~~~--s~~~AA~~L~isqsavS~~i~~LE~~lg~~Lf~-------R~~~~~~lT~~G~~l~~~a~~~l 72 (313)
T 2h98_A 2 ELRHLRYFVTVVEEQ--SISKAAEKLCIAQPPLSRQIQKLEEELGIQLFE-------RGFRPAKVTEAGMFFYQHAVQIL 72 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEE-------ECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 679999999999819--999999998988899999999999996999999-------89997733872899987500117
Q ss_pred HHHHH
Q ss_conf 99999
Q T0617 116 IEREK 120 (148)
Q Consensus 116 ~~~~~ 120 (148)
....+
T Consensus 73 ~~~~~ 77 (313)
T 2h98_A 73 THTAQ 77 (313)
T ss_dssp -----
T ss_pred HHHHH
T ss_conf 99998
No 156
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=95.27 E-value=0.0024 Score=41.28 Aligned_cols=77 Identities=21% Similarity=0.190 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH---HHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999984---13212567432230000017888999999999
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK---KYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~---gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
+++..+..++..+.+.| +.+.-|+.++++.|++|+.|++||+. .|.+| ....+.+|+.|+.++..+..
T Consensus 13 ~~dl~~L~~F~~v~e~g--s~s~AA~~L~isq~avS~~i~~LE~~lG~~LF~R-------~~r~~~lT~~g~~l~~~~~~ 83 (315)
T 1uth_A 13 DIDLNLLVVFNQLLLDR--SVSTAGEKLGLTQPAVSNSLKRLRTALNDDLFLR-------TSKGMEPTPYALHLAEPVIY 83 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE-------CCCCCEEHHHHHHHHHHHHH
T ss_conf 69999999999999809--9999999978798899999999999839917998-------19986102889999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q T0617 114 FAIEREKQL 122 (148)
Q Consensus 114 ~~~~~~~~~ 122 (148)
....+.+..
T Consensus 84 ~~~~~~~~~ 92 (315)
T 1uth_A 84 ALNTLQTAL 92 (315)
T ss_dssp ---------
T ss_pred HHHHHHHHH
T ss_conf 998765556
No 157
>1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=95.16 E-value=0.092 Score=30.70 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHH-----HCCCCCHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHH
Q ss_conf 89998999999997-----0889998899998--6589011458999999841321256743223000001788899999
Q T0617 37 GIGMTEWRIISVLS-----SASDCSVQKISDI--LGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
Q Consensus 37 glt~~q~~iL~~l~-----~~~~~t~~eLa~~--l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~ 109 (148)
.|+..+..||..|- ...|...+.|++. +++|++|+-.....||+.||++ +++..-||. .|++|-++|-
T Consensus 14 ~L~~R~~~IL~~iVe~Yi~tgePVGSk~L~~~~~l~~SsATIRN~Ma~LE~~G~L~-qpHtSaGRI----PT~kGyR~YV 88 (338)
T 1stz_A 14 KLNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIY-QPHTSAGRI----PTDKGLRFYY 88 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEE-CCSSCSCBE----ECHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC-CCCCCCCCC----CCHHHHHHHH
T ss_conf 40899999999999999742995678999987289988699999999998787715-899999966----8399999999
Q ss_pred HHH
Q ss_conf 999
Q T0617 110 VAS 112 (148)
Q Consensus 110 ~~~ 112 (148)
+..
T Consensus 89 d~l 91 (338)
T 1stz_A 89 EEM 91 (338)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 972
No 158
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=95.16 E-value=0.067 Score=31.60 Aligned_cols=84 Identities=11% Similarity=0.021 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHH--HCCCHHHH
Q ss_conf 9998899998658901145899999984132125674322300000178889999999999999999998--57999899
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLL--EEFEEAEK 131 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~--~~l~~ee~ 131 (148)
.++..+||+.+|++++.|-..+++|+..|||+..+.. ....-.++++...-+.++.. .++...+ ..-+.++.
T Consensus 51 ~L~E~~La~~~gVSRtpVREAL~~L~~~GlV~~~~~~---G~~V~~~~~~~i~el~~~R~---~lE~~a~~~~~~~~~~~ 124 (239)
T 2hs5_A 51 RLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNR---GVFVRVPTAEDITELYICRR---VVECAGVNGFDPATGDL 124 (239)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT---EEEECCCCHHHHHHHHHHHH---HHHHHHHHTCCTTTCCC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf 8289999999895979999999999970100210788---77543223654100699999---88999999875006778
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q T0617 132 DQLFILLKKLRN 143 (148)
Q Consensus 132 ~~l~~~L~~l~~ 143 (148)
..+...+..+..
T Consensus 125 ~~l~~~~~~~~~ 136 (239)
T 2hs5_A 125 SRVAEALDLADE 136 (239)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 889999999999
No 159
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulator, transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=95.12 E-value=0.19 Score=28.67 Aligned_cols=56 Identities=18% Similarity=0.289 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 99988999986589-01145899999984132125674322300000178889999999999
Q T0617 54 DCSVQKISDILGLD-KAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 54 ~~t~~eLa~~l~i~-~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
+.|+.+||+.+|++ +++++|.+++|.+.|+|+... +...|.=.+.-+++.....+.
T Consensus 169 ~~t~~~iA~~lg~s~r~~vsR~l~~L~~~giI~~~~-----~~i~I~D~~~L~~~a~~~~~~ 225 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKN-----SCFYVQNLDYLKRYAPKLDEW 225 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEET-----TEEEESCHHHHHHHCHHHHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECC-----CEEEECCHHHHHHHHHHCCHH
T ss_conf 767999999958982779999999999889899639-----999996899999986525033
No 160
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=95.09 E-value=0.087 Score=30.86 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=48.7
Q ss_pred HHHCC--CCHHHHHHHHHHHHC--CCCCHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98728--999899999999708--899988999986-----5890114589999998413212567432
Q T0617 33 TQKFG--IGMTEWRIISVLSSA--SDCSVQKISDIL-----GLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 33 ~~~~g--lt~~q~~iL~~l~~~--~~~t~~eLa~~l-----~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
++..| +|+....||..|... .+.|+.+|-+.+ .++.+||-|.++.|++.|+|.+...+..
T Consensus 9 Lk~~Glr~T~qR~~vl~~L~~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~~~gli~~~~~~~~ 77 (136)
T 1mzb_A 9 LRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGG 77 (136)
T ss_dssp HHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSS
T ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 998599979899999999985799999999999999975878888999999999996893899884898
No 161
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228}
Probab=94.86 E-value=0.021 Score=34.99 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHCC----CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 89998999999997088----9998899998658901145899999984132125
Q T0617 37 GIGMTEWRIISVLSSAS----DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~----~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
.+|+.+-.|..+|-.+| .+++++||+..++++++|+|.+++|-=.||-+-+
T Consensus 14 ~ls~~e~~Ia~yil~~~~~~~~~si~~lA~~~~vS~aTv~Rf~kkLGf~gf~efk 68 (107)
T 3iwf_A 14 YFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELK 68 (107)
T ss_dssp GSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHH
T ss_pred HCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 6289999999999959999977649999989698988999999994899899999
No 162
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae}
Probab=94.84 E-value=0.046 Score=32.69 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=48.0
Q ss_pred HHCC--CCHHHHHHHHHHHHC--CCCCHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8728--999899999999708--899988999986-----589011458999999841321256743
Q T0617 34 QKFG--IGMTEWRIISVLSSA--SDCSVQKISDIL-----GLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 34 ~~~g--lt~~q~~iL~~l~~~--~~~t~~eLa~~l-----~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
+..| +|+....||.+|... .+.++.+|.+.+ .++.+||-|.++.|++.|+|.+...++
T Consensus 9 k~~GlR~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYRtL~~L~e~gii~~~~~~~ 75 (150)
T 2w57_A 9 KDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEG 75 (150)
T ss_dssp HHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGG
T ss_pred HHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf 9869998989999999998289999999999999986088857899999999999678489996089
No 163
>2obp_A Putative DNA-binding protein; YP_298295.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Ralstonia eutropha JMP134} SCOP: a.4.5.71
Probab=94.82 E-value=0.086 Score=30.88 Aligned_cols=75 Identities=24% Similarity=0.275 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHH
Q ss_conf 8999899999999708------8999889999865890114589999998413212567432230000017888999999
Q T0617 37 GIGMTEWRIISVLSSA------SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
Q Consensus 37 glt~~q~~iL~~l~~~------~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~ 110 (148)
+|.+.-..+|..|++. ++.+...|+++.++.=|+.-|++-.|.+.|++....+. |+|. .-.||+.|+++..+
T Consensus 13 ~lDP~lvavL~~L~~A~~e~~g~~wSLAkl~KRa~vpMStLRR~LT~L~~aGLv~t~~~e-dG~g-~A~LT~~G~~lc~~ 90 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEA-DGRG-HASLTQEGAALAAQ 90 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECT-TSCE-EEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECC-CCCE-EEHHHHHHHHHHHH
T ss_conf 679899999999999852379995439999877089679999999998507815887635-7730-00041668999999
Q ss_pred HHH
Q ss_conf 999
Q T0617 111 ASD 113 (148)
Q Consensus 111 ~~~ 113 (148)
+..
T Consensus 91 LFg 93 (96)
T 2obp_A 91 LFP 93 (96)
T ss_dssp HCC
T ss_pred HCC
T ss_conf 818
No 164
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=94.75 E-value=0.016 Score=35.70 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 89998999999997088--99988999986589011458999999841321256743223000001
Q T0617 37 GIGMTEWRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINL 100 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~L 100 (148)
+++..|..|...|...| |+-.++|....++..+.+.+.++.|+.++||.-..+-..+..+.+.|
T Consensus 17 ~l~~eE~lVY~~I~~aG~~GIW~kdIr~ktnL~~~~l~K~LK~Lesk~lIK~VksV~~~~rK~YmL 82 (91)
T 2dk5_A 17 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYML 82 (91)
T ss_dssp CSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEE
T ss_conf 799999999999997065662499999873998899999999997268804432557887379987
No 165
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=94.67 E-value=0.0043 Score=39.53 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH---HHHHCCCCCCCCCEECC-CCCHHHHHHHHHHHHHH
Q ss_conf 989999999970889998899998658901145899999984---13212567432230000-01788899999999999
Q T0617 40 MTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK---KYIEVNGHSEDKRTYAI-NLTEMGQELYEVASDFA 115 (148)
Q Consensus 40 ~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~---gli~r~~~~~D~R~~~l-~LT~~G~~~~~~~~~~~ 115 (148)
..|..++..+.+.+ .+.+.-|+.+++++|++|+.|++||+. -|+. |..+.+ .||+.|+.++..+....
T Consensus 3 l~~L~~f~~v~~~~-~s~s~AA~~L~isqsavS~~i~~LE~~lg~~Lf~-------R~~r~~~~lT~aG~~l~~~a~~~l 74 (324)
T 1al3_A 3 LQQLRYIVEVVNHN-LNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFA-------RSGKHLTQVTPAGQEIIRIAREVL 74 (324)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEE-------ECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 79999999999869-9899999998988899999999999997996099-------879998667886986422015777
Q ss_pred HHHHH
Q ss_conf 99999
Q T0617 116 IEREK 120 (148)
Q Consensus 116 ~~~~~ 120 (148)
..+.+
T Consensus 75 ~~~~~ 79 (324)
T 1al3_A 75 SKVDA 79 (324)
T ss_dssp -----
T ss_pred HHHHH
T ss_conf 77777
No 166
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A*
Probab=94.61 E-value=0.22 Score=28.12 Aligned_cols=33 Identities=15% Similarity=0.503 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 999889999865890114589999998413212
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
++|..+||..+|+++.++++.+++|.+.|+|.+
T Consensus 177 ~lt~~~la~~~g~sr~tvsr~l~~L~~~g~I~~ 209 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 789999999979999999999999998898996
No 167
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482}
Probab=94.52 E-value=0.056 Score=32.14 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=49.7
Q ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHH
Q ss_conf 99999999708-8999889999865890114589999998413212567432230000017888999999
Q T0617 42 EWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
Q Consensus 42 q~~iL~~l~~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~ 110 (148)
++-+.-.|... +|+|..|||.+++++...+.+++.-|+..|++++.. | .+.+|+.+..+..+
T Consensus 37 elglfd~L~~~~~p~T~~eLA~~~g~~~~~l~rlL~~L~~~g~l~~~~---~----~y~lt~~~~~ll~~ 99 (363)
T 3dp7_A 37 KFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLEE---D----RYVLAKAGWFLLND 99 (363)
T ss_dssp HTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEET---T----EEEECHHHHHHHHC
T ss_pred HCCHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEC---C----EEECCHHHHHHHCC
T ss_conf 869698973399999999999875939999999999998389099859---9----99729869988289
No 168
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli BL21}
Probab=94.49 E-value=0.097 Score=30.53 Aligned_cols=67 Identities=18% Similarity=0.336 Sum_probs=50.5
Q ss_pred HHHCC--CCHHHHHHHHHHHHC--CCCCHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCC
Q ss_conf 98728--999899999999708--899988999986-----5890114589999998413212567432230000017
Q T0617 33 TQKFG--IGMTEWRIISVLSSA--SDCSVQKISDIL-----GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLT 101 (148)
Q Consensus 33 ~~~~g--lt~~q~~iL~~l~~~--~~~t~~eLa~~l-----~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT 101 (148)
.+..| +|+....||.+|... .++++.||-..+ .++.+||-|.++.|++.|+|.+.... |++ ..+.||
T Consensus 8 Lk~~Glr~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~Glv~~~~~~-~g~-~~YeLs 83 (83)
T 2fu4_A 8 LKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFE-GGK-SVFELT 83 (83)
T ss_dssp HHHTTCCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECG-GGC-EEEEEC
T ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECC-CCC-EEEECC
T ss_conf 9986999699999999999948999999999999998608998761499999999988988999749-995-787279
No 169
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=94.44 E-value=0.037 Score=33.35 Aligned_cols=34 Identities=29% Similarity=0.586 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9998899998658901145899999984132125
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
+.|..+||..+|+++.+++|.+++|.+.|+|...
T Consensus 164 ~~t~~~iA~~~g~sr~tvsR~l~~L~~~glI~~~ 197 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELEREGYIEKH 197 (213)
T ss_dssp ----------------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 8779999999798999999999999978989986
No 170
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=94.36 E-value=0.038 Score=33.23 Aligned_cols=35 Identities=9% Similarity=0.435 Sum_probs=32.2
Q ss_pred C-CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9-9889999865890114589999998413212567
Q T0617 55 C-SVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 55 ~-t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
+ +..+||+.+|+++++|...+..|+..|||+..+.
T Consensus 31 LPsE~eLa~~~gVSr~~VReAl~~L~~~Glv~~~~g 66 (239)
T 1hw1_A 31 LPAERELSELIGVTRTTLREVLQRLARDGWLTIQHG 66 (239)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf 906999999979299999999999998688154258
No 171
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=94.31 E-value=0.065 Score=31.72 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99899999999708899988999986589011458999999841321
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~ 85 (148)
+.....+|..|.+....+-.+||+.+++|+++|-+.|+.|.+.||..
T Consensus 4 ~~~~~~ll~~L~~g~~~SG~~la~~L~iSR~avwk~i~~L~~~G~~i 50 (321)
T 1bia_A 4 NTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp CHHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCE
T ss_conf 64199999997269938799999997989999999999999769738
No 172
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=94.26 E-value=0.051 Score=32.40 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHCC----CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 289998999999997088----999889999865890114589999998413212567
Q T0617 36 FGIGMTEWRIISVLSSAS----DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~----~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
.+||+.+-.|..+|-.++ .+++++||+..++++++|+|.+++|-=.||-+-+..
T Consensus 17 ~~Lt~sEk~Ia~yil~~~~~v~~~si~~lA~~~~vS~sTI~Rf~kkLG~~Gf~efk~~ 74 (111)
T 2o3f_A 17 HXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXMR 74 (111)
T ss_dssp GGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 5389999999999996934764468999998979898899999999477989999999
No 173
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=94.23 E-value=0.21 Score=28.24 Aligned_cols=68 Identities=13% Similarity=0.248 Sum_probs=47.9
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCC--------------CHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHH
Q ss_conf 9999997088999889999865890--------------11458999999841321256743223000001788899999
Q T0617 44 RIISVLSSASDCSVQKISDILGLDK--------------AAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~--------------~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~ 109 (148)
.+|..|+.+||+.+..|+...|-.+ +-+-.+++.||+.|||++.+ ..+| .||++|+..++
T Consensus 57 SilRkiY~~gpvGV~~Lr~~YGg~k~rG~~P~h~~~asg~iiR~~lQqLE~~g~vek~~--~~GR----~lT~~Gq~~LD 130 (150)
T 2v7f_A 57 SILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP--GKGR----VITPKGRSFLD 130 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEET--TTEE----EECHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECC--CCCC----EECHHHHHHHH
T ss_conf 99999986289638899999788878999998777776289999999998688867769--9984----77887899999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q T0617 110 VASDFAIE 117 (148)
Q Consensus 110 ~~~~~~~~ 117 (148)
++......
T Consensus 131 ~iA~~v~~ 138 (150)
T 2v7f_A 131 KIATELKK 138 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 174
>2p8t_A Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} SCOP: a.4.5.72 d.74.4.2
Probab=94.13 E-value=0.15 Score=29.19 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=49.3
Q ss_pred HHHHHHHH-HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999997-0889998899998658901145899999984132125674322300000178889999999999
Q T0617 43 WRIISVLS-SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 43 ~~iL~~l~-~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
-.+|..+. .+.|+--+.||+.++++.+++-..++.|++.|||+.. ..+ -.+|++|.+++.++...
T Consensus 18 ~~il~~l~~~~~PvGrr~la~~l~lse~~vR~~~~~L~~~gli~~~---s~G----~~~T~~G~~~~~~l~~~ 83 (200)
T 2p8t_A 18 EDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSK---QRG----HFLTLKGKEIRDKLLSM 83 (200)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-----C----EEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEC---CCC----CEECHHHHHHHHHHHHH
T ss_conf 9999999984898478999988299889999999988868886445---897----60788699999999998
No 175
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structure funded by NIH; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=94.04 E-value=0.033 Score=33.66 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCEECCCCCHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999984132125-674322300000178889999
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN-GHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~-~~~~D~R~~~l~LT~~G~~~~ 108 (148)
.||.+...+|.+|+-++|+|..+|.+.-|++.+. .++.|..+|||+.. +.+.-+|...+..|++-.+.+
T Consensus 91 ~LS~aalEtLAiIAY~QPitr~eI~~iRGv~s~~---~l~~L~~~glI~~~gr~~~~Grp~~y~tT~~Fl~~F 160 (162)
T 1t6s_A 91 RLSRSMLEVLAVVAWHQPVTKGEIQQIRGASPDY---SIDRLLARGLIEVRGRADSPGRPLQYGTTEVFLDLF 160 (162)
T ss_dssp HHHHHHHHHHHHHHHHCSEEHHHHHHHHTCCCCS---HHHHHHHTTSEEEEEECSSTTCCEEEEECHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHH---HHHHHHHCCCEEECCCCCCCCCCEEHHHHHHHHHHC
T ss_conf 7788999999999974872699999997776218---999999879978658369999876503139999861
No 176
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1}
Probab=94.00 E-value=0.12 Score=29.92 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=43.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHH
Q ss_conf 9999999708899988999986589011458999999841321256743223000001788899
Q T0617 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQE 106 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~ 106 (148)
..+.-.|. .++.|..+||..+++++..+.++++-|...|++++..+ | .+.+|+.|.-
T Consensus 31 Lglfd~L~-~g~~t~~eLA~~~g~~~~~l~~lL~~L~~~gll~~~~~--~----~y~~t~~s~~ 87 (334)
T 2ip2_A 31 LGLADLIE-SGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTR--D----GYANTPTSHL 87 (334)
T ss_dssp TTHHHHHH-TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT--T----EEEECHHHHT
T ss_pred CCHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCC--C----EEECCHHHHH
T ss_conf 79889986-79999999998869198999999999997898043177--5----4736746763
No 177
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=93.89 E-value=0.094 Score=30.62 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999984
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
+||+.|..||..+. .|.+.++||+.++++..||...++++-++
T Consensus 21 ~LT~rE~~Vl~lla--~G~s~~eIA~~l~iS~~TV~~~~~~i~~K 63 (82)
T 1je8_A 21 QLTPRERDILKLIA--QGLPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHHHT--TTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 08999999999999--28999999768488899999999999998
No 178
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=93.58 E-value=0.045 Score=32.78 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=33.4
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 998899998658901145899999984132125674
Q T0617 55 CSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
.+..+||+.++++++||.+.++.|+..|+|++.+..
T Consensus 54 PSereLA~~lgVSR~TVr~Al~~L~~eGlI~~~~G~ 89 (272)
T 3eet_A 54 PSQARIREEYGVSDTVALEARKVLMAEGLVEGRSGS 89 (272)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC-
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 379999999895999999999999986997835994
No 179
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482}
Probab=93.56 E-value=0.056 Score=32.15 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=48.7
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH------HHHHHHHHH-HHCCC
Q ss_conf 99889999865890114589999998413212567432230000017888999999999------999999999-85799
Q T0617 55 CSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD------FAIEREKQL-LEEFE 127 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~------~~~~~~~~~-~~~l~ 127 (148)
.+..+||+.+++++++|.+.+..|++.|+|+..+.. ... +++.+......... ....+...+ .-+++
T Consensus 36 Ps~r~La~~~~VSr~tVr~Al~~L~~~G~i~~~~g~----G~~--V~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 109 (126)
T 3ic7_A 36 PSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGI----GFF--VASGAKMLIHSLRKEQFLKEEVGSFFRQLYTLGIS 109 (126)
T ss_dssp CCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTT----EEE--ECTTHHHHHHHHHHTTCCCCCSHHHHHHHHHTTCC
T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCC----EEE--ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 789999987593999999999999988967996387----789--77898889999999999999999999999995989
Q ss_pred HHHHHHH
Q ss_conf 9899999
Q T0617 128 EAEKDQL 134 (148)
Q Consensus 128 ~ee~~~l 134 (148)
.+++..+
T Consensus 110 ~eel~~~ 116 (126)
T 3ic7_A 110 IKEIEKM 116 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 180
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=93.53 E-value=0.039 Score=33.20 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHH
Q ss_conf 999899999999708899988999986589011-458999999841321256743223000001788899
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAA-VSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQE 106 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~-vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~ 106 (148)
++..+-.|+.+|...|+.+.-+||+.+|+++.. |.+.+-.|+++|.|.+...... .-.||+++++
T Consensus 9 ~~~~~ekI~~~L~~~g~stAl~lak~lgl~kakeVN~~LY~Lek~g~v~k~~~tPP----~W~l~~~~~E 74 (79)
T 1xmk_A 9 MAEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPP----IWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSC----EEEECHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCC----CEEEECCHHH
T ss_conf 43789999999996598439999999499726777599999997568001799999----6452302105
No 181
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=93.48 E-value=0.17 Score=28.93 Aligned_cols=69 Identities=19% Similarity=0.322 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHH----CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHH
Q ss_conf 899989999999970----8899988999986589011458999999841321256743223000001788899999
Q T0617 37 GIGMTEWRIISVLSS----ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
Q Consensus 37 glt~~q~~iL~~l~~----~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~ 109 (148)
-|+..+|++|..|.. ++=.+...|....++..+.+...+++|.+.++|.+...+-|+ +.||-.|-.+++
T Consensus 9 ~~~~~~~r~l~~~e~~~~~~e~vp~~~i~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~y~g----y~lt~~gyd~la 81 (282)
T 1zar_A 9 KMGKHSWRIMDAIFKNLWDYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQNRQKDYEG----STFTFIGLSLYS 81 (282)
T ss_dssp TCCHHHHHHHHHHHTTTTTCSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSSSCE----EEECHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEECCCCCCE----EEEECCCHHHHH
T ss_conf 5588788999999947578764899999998389930589999998756031402788723----798618713998
No 182
>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=93.37 E-value=0.16 Score=29.12 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2899989999999970889998899998658901145899999984132
Q T0617 36 FGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYI 84 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli 84 (148)
.+||..|+.||..+. .|.+.++||+.++++..||...+.++-++==+
T Consensus 26 ~~LT~rE~eVl~ll~--~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLS--EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 306999999999999--27999999989796999999999999999689
No 183
>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=93.35 E-value=0.044 Score=32.80 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=32.4
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99889999865890114589999998413212567
Q T0617 55 CSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
.+..+||+.+++++.||.+.++.|+..|+|.+.+.
T Consensus 30 PsE~~La~~~gVSR~TvR~Al~~L~~eG~i~~~~g 64 (239)
T 3bwg_A 30 PVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRG 64 (239)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHCCEECCCC
T ss_conf 25999999989799999999999997246052488
No 184
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=93.21 E-value=0.059 Score=32.00 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=32.9
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 998899998658901145899999984132125674
Q T0617 55 CSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
.+..+||+.+++++.||.+.++.|++.|||.+++..
T Consensus 35 PsE~~La~~~~VSr~TVR~Al~~L~~eGli~~~~G~ 70 (243)
T 2wv0_A 35 PSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGR 70 (243)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 369999999796999999999999977988998883
No 185
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua}
Probab=93.20 E-value=0.048 Score=32.55 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=32.7
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98899998658901145899999984132125674
Q T0617 56 SVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 56 t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
+-.+||+.+++++.||-+.++.|++.|+|.+.+..
T Consensus 35 sE~eLa~~~~VSr~TvR~Al~~L~~~Gli~~~~g~ 69 (236)
T 3edp_A 35 NETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGV 69 (236)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHCCEEECCCC
T ss_conf 79999999894999999999999971652644880
No 186
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=93.19 E-value=0.28 Score=27.49 Aligned_cols=72 Identities=15% Similarity=0.028 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHH
Q ss_conf 8999899999999708899988999986589011458999999841321256743223000001788899999999
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 112 (148)
.|+...-.-+..+.. .+.++.+||+.+++++++|++++++..+.|-+.-.+-...+.. .+|+.....+.+..
T Consensus 17 pLs~~~R~rIv~l~~-~G~s~~~Iar~l~Vs~~~V~kil~r~~etG~i~p~~~gG~rpr---~~t~~~~~~I~~~~ 88 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---IATPEIENRIEEYK 88 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCC---SSCSTHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCHHHHHHHHHHH
T ss_conf 898999999999998-6999999999889689999999999873598777888999998---79999999999999
No 187
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, gene regulation; 2.70A {Mycobacterium tuberculosis}
Probab=93.01 E-value=0.058 Score=32.04 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHC-CCCCHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999899999999708-899988999986-----5890114589999998413212567432
Q T0617 38 IGMTEWRIISVLSSA-SDCSVQKISDIL-----GLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 38 lt~~q~~iL~~l~~~-~~~t~~eLa~~l-----~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
+|+....||..|... ++.++.+|.+.+ .++++||-|.++.|++.|+|.+...++.
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~l~~~gli~~i~~~~~ 69 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTG 69 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTS
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 3999999999998189998999999999975899988899999999986894899991899
No 188
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=92.99 E-value=0.14 Score=29.49 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=45.1
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 9999999970889998899998658901145899999984132125674322300000178889999
Q T0617 42 EWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 42 q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
+..+.-.|. .+|.|..+||+.+++++..+.++++-|...|++++.. + .+.+|+.+..+.
T Consensus 53 eLglf~~L~-~gp~T~~eLA~~~g~~~~~l~rlL~~L~~~g~l~~~~----g---~y~~t~~s~~l~ 111 (359)
T 1x19_A 53 ELDLFSHMA-EGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED----G---KWSLTEFADYMF 111 (359)
T ss_dssp HHTHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----T---EEEECHHHHHHS
T ss_pred HCCHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC----C---EEECCHHHHHHH
T ss_conf 879889984-7999999999887909999999999998779689669----9---785298899982
No 189
>2r3s_A Uncharacterized protein; ZP_00112478.1, methyltransferase domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102}
Probab=92.97 E-value=0.075 Score=31.30 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 999999970889998899998658901145899999984132125674322300000178889999
Q T0617 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
..+.-.| ..++.|..+||+.+++++..+.+++..|...|++++.. | .+.+|+.+..++
T Consensus 29 lglf~~L-~~g~~t~~eLa~~~g~~~~~l~~lL~~L~~~Gll~~~~---~----~y~lt~~~~~~l 86 (335)
T 2r3s_A 29 LNVFTAI-SQGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQA---E----GYRLTSDSAMFL 86 (335)
T ss_dssp TTHHHHH-TTSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---T----EEEECHHHHHHT
T ss_pred CCHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEC---C----EEEECHHHHHHH
T ss_conf 7988998-57999999999771979999999999999779368569---9----887088899771
No 190
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=92.96 E-value=0.36 Score=26.74 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 289998999999997088999889999-8658901145899999984132125674322300000178889999999999
Q T0617 36 FGIGMTEWRIISVLSSASDCSVQKISD-ILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~~t~~eLa~-~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
-.|+...-.++..+..+.=+|..++++ .-....+.+..-|.-|.++|||++.- |+ +-.|..|..++.++...
T Consensus 12 ~~lnekta~I~i~iaKk~FiTa~ev~e~~~~~~~avvnSNIGVliKKgliEKSG---DG----~v~T~e~~~il~~AA~l 84 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVEKSG---DG----LIITGEAQDIISNAATL 84 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEEEET---TE----EEECHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCEEEEEECCHHHCCC---CC----EEEECCHHHHHHHHHHH
T ss_conf 123000357889888750333999998768851201214500445303110158---81----68606288999999999
Q ss_pred HHH
Q ss_conf 999
Q T0617 115 AIE 117 (148)
Q Consensus 115 ~~~ 117 (148)
+.+
T Consensus 85 ~a~ 87 (95)
T 1bja_A 85 YAQ 87 (95)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 875
No 191
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix bundle, acetylation; HET: PHE; 3.30A {Homo sapiens}
Probab=92.90 E-value=0.014 Score=36.07 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=54.2
Q ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999708-8999889999865890114589999998413212567432230000017888999999999999
Q T0617 42 EWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAI 116 (148)
Q Consensus 42 q~~iL~~l~~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~ 116 (148)
+-.+|..|... +.....+||..++++++.|.+.++.|+.+|++..... +-...+.||+.|++++..-.+...
T Consensus 7 ~~~lL~~l~~~~~~~~s~ela~~~g~~~~~v~~~~~~L~~~g~~i~~e~---~~~~~~~LT~eG~~~~~~G~PE~~ 79 (508)
T 3l4g_A 7 AELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAEL---RSTKHWELTAEGEEIAREGSHEAR 79 (508)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEE---EEEEEEEECHHHHHHHHCCCHHHH
T ss_conf 9999999986689768999999819999999999999972898189999---988899999889999973999999
No 192
>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 2gxb_A 2acj_A
Probab=92.60 E-value=0.12 Score=29.94 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=45.0
Q ss_pred HHHHHHHHHH---CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHH
Q ss_conf 9999999970---8899988999986589011458999999841321256743223000001788899
Q T0617 42 EWRIISVLSS---ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQE 106 (148)
Q Consensus 42 q~~iL~~l~~---~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~ 106 (148)
+-.||.+|.. ..+.+..+||+.+++++..|.+.+=+|++.|.|.+....-- .-+||+.|..
T Consensus 12 e~~Il~~L~~lg~g~~~tA~~LAk~lgv~Kk~vN~~LY~L~k~g~v~~~~~~PP----~W~l~~~~~~ 75 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPP----LWKIAVSTQA 75 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSC----EEEEC-----
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCC----CEEECCCCCC
T ss_conf 999999998548997510999999969888898999999998788320589899----6374578887
No 193
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=92.56 E-value=0.18 Score=28.79 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=45.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999708899988999986589011458999999841321256743223
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKR 94 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R 94 (148)
.||.+|.+..|+..+|||.+++++.-.+-.-+--|++.|-|.|.|-....+
T Consensus 4 ~IL~f~~~~~~crT~EIA~~~~~SaYQAR~YL~~LEKegkIrRsPlRrGa~ 54 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMA 54 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSS
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 899999852897389999985608999999999997707701585100169
No 194
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=92.51 E-value=0.1 Score=30.33 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=34.4
Q ss_pred C-CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9-98899998658901145899999984132125674322
Q T0617 55 C-SVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 55 ~-t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
+ +..+||+.+|+|+++|-..++.|+..|+|+..+..+-+
T Consensus 28 LpsE~eLa~~~gVSRt~VREAL~~L~~~Glv~~~~g~G~~ 67 (239)
T 2di3_A 28 LPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPR 67 (239)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGG
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCCCC
T ss_conf 9109999999895999999999998860803416797775
No 195
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=92.30 E-value=0.25 Score=27.77 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999984
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
.||+.|+.||..+.. |.+.++||..++++..||...+.++-++
T Consensus 34 ~LT~rE~~Vl~ll~~--G~s~~eIA~~L~iS~~TV~~~~~~i~~K 76 (99)
T 1p4w_A 34 RLSPKESEVLRLFAE--GFLVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SCCHHHHHHHHHHHH--TCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 879999999999992--8999999989796999999999999998
No 196
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=92.23 E-value=0.2 Score=28.44 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=39.5
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9872899989999999970889998899998658901145899999984
Q T0617 33 TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
.....||+.|..+|..+. .|.+.++||..++++.+||...+.++-++
T Consensus 7 ~~~~~Lt~rE~~vl~~~~--~G~s~~eIA~~l~is~~TV~~~~~~i~~K 53 (74)
T 1fse_A 7 QSKPLLTKREREVFELLV--QDKTTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp -CCCCCCHHHHHHHHHHT--TTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 688987999999999999--27999999999689877999999999998
No 197
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=92.16 E-value=0.59 Score=25.34 Aligned_cols=72 Identities=15% Similarity=0.005 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 9998999999997088999889999865890114589999998413212567432230000017888999999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
|+..--.-+..+.. .|++..+||+.+++++++|++++++..+.|-+.-.+... ...-.+|+.-.+.+.+...
T Consensus 33 Ls~dlR~rIV~l~~-~G~s~r~iArrf~VS~s~V~ki~~R~retG~~~p~~~gg---~rp~~~t~~~~~~I~~l~~ 104 (149)
T 1k78_A 33 LPDVVRQRIVELAH-QGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGG---SKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp CCHHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCC---CCCSSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHH
T ss_conf 97999999999999-699899999987868899999999998528888787889---9888678899999999998
No 198
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.08 E-value=0.11 Score=30.20 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCC---CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8999999997088---999889999865890114589999998413212567
Q T0617 41 TEWRIISVLSSAS---DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 41 ~q~~iL~~l~~~~---~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
.+-.||.+|...| +.+..+||+.+++++..|.+.+-+|++.|.|.+...
T Consensus 15 ~e~kIl~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~LY~L~k~g~v~~~~~ 66 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG 66 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 8999999999658987602999999969888888999999998789530699
No 199
>2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation, two-component regulatory system; NMR {Bacillus subtilis}
Probab=91.79 E-value=0.25 Score=27.79 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 28999899999999708899988999986589011458999999841
Q T0617 36 FGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKK 82 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~g 82 (148)
..||+.|..||..+. .|.+.++||+.++++..||...+.++-++=
T Consensus 11 ~~Lt~rE~~vl~~l~--~G~t~~eIA~~l~iS~~TV~~~~~~i~~Kl 55 (73)
T 2krf_A 11 DVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIFNKL 55 (73)
T ss_dssp SSSCHHHHHHHHHHH--TTSCHHHHHHHHTCCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 887999999999999--489999998786888789999999999981
No 200
>3jyv_T S19E protein; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Probab=91.76 E-value=0.2 Score=28.45 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=46.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCC--------------CHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHH
Q ss_conf 9999997088999889999865890--------------11458999999841321256743223000001788899999
Q T0617 44 RIISVLSSASDCSVQKISDILGLDK--------------AAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~--------------~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~ 109 (148)
.+|..|+.+||+.+..|+...|-.+ +-+-.+++.||+.|||++.+ ..+| .||++|+..++
T Consensus 57 SilRkvY~~gpvGV~~L~~~YGg~k~rG~~P~~~~~aSg~iiR~~LQqLE~~glvek~~--~~GR----~iT~~Gq~~LD 130 (141)
T 3jyv_T 57 SVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISP--KGGR----RISENGQRDLD 130 (141)
T ss_dssp HHHHHHHHTCCSCSGGGTSSSSCCTTTCCCSSSCCCHHHHHHHHHHHHHHTTTSCCBCT--TSSB----CCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECC--CCCC----EECHHHHHHHH
T ss_conf 99999986089648999999788877999998777765388999999998788877669--9983----77987899999
Q ss_pred HHHHHH
Q ss_conf 999999
Q T0617 110 VASDFA 115 (148)
Q Consensus 110 ~~~~~~ 115 (148)
++....
T Consensus 131 ~iA~~v 136 (141)
T 3jyv_T 131 RIAAQT 136 (141)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999998
No 201
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Mycobacterium tuberculosis}
Probab=91.68 E-value=0.2 Score=28.51 Aligned_cols=61 Identities=7% Similarity=0.080 Sum_probs=45.6
Q ss_pred HHHCC-CCCHH---HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHH
Q ss_conf 97088-99988---999986589011458999999841321256743223000001788899999999
Q T0617 49 LSSAS-DCSVQ---KISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
Q Consensus 49 l~~~~-~~t~~---eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 112 (148)
+...| .++.+ ++.+.+|++.++|-..+.+|.++|+|+.... +|.....+|+.|.+......
T Consensus 14 ~~~~g~~i~~~~Li~l~~~~Gi~~~avRtAlsRL~~~GwL~~~r~---Gr~~~~~l~~~~~~~~~~~~ 78 (247)
T 3kfw_X 14 LGAHPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSAD---GYRLSDRLLARQRRQDEAMR 78 (247)
T ss_dssp TTTTTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHTTSEEEETT---EEEECHHHHHHHHHHHHHHS
T ss_pred CCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCC---CCCCCHHHHHHHHHHHHHHC
T ss_conf 047887230999999999839981479999999987597551577---53125777576887877632
No 202
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis}
Probab=91.61 E-value=0.36 Score=26.75 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999984
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
+||..|..||..+. .|++.++||+.++++..||...++++-+|
T Consensus 149 ~LT~RE~eVl~ll~--~G~snkeIA~~L~iS~~TVk~h~~~I~~K 191 (225)
T 3c3w_A 149 GLTDQERTLLGLLS--EGLTNKQIADRMFLAEKTVKNYVSRLLAK 191 (225)
T ss_dssp TSCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--HCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 59999999999999--48998899999788798999999999999
No 203
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=91.55 E-value=0.12 Score=30.05 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=50.7
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHH
Q ss_conf 99999970889998899998658901145899999984132125674322300000178889
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQ 105 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~ 105 (148)
..+.+|..+.-...-+||..+++..+.+-.-|+.|++.|-|.-..|. |.+.+++||.|-
T Consensus 11 ~FI~~Ik~~Kvv~LedLAa~F~lktqd~i~RIq~Le~~g~ltGViDD---RGKfIyIS~s~~ 69 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDD---RGKFIYITPSGP 69 (72)
T ss_dssp HHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECT---TCCEEECCCSSC
T ss_pred HHHHHHHHCCEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECC---CCCEEEECCCCC
T ss_conf 99999998787639999988099679999999999987986557858---988799758999
No 204
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=91.50 E-value=0.3 Score=27.32 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHH
Q ss_conf 8999899999999708899988999986589011458999999841321256743223000001788899999999
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 112 (148)
.||..+-..+..+... |.++.+||..+++++++|.+.+++-...+ +....+| .-.+|+.-.+.+....
T Consensus 6 ~lt~~~R~~I~~l~~~-G~s~~~IAk~lg~s~~tV~r~lk~~~~~~-----~~~~~gr--~~~~t~~~~~~i~~~~ 73 (141)
T 1u78_A 6 ALSDTERAQLDVMKLL-NVSLHEMSRKISRSRHCIRVYLKDPVSYG-----TSKRAPR--RKALSVRDERNVIRAA 73 (141)
T ss_dssp CCCHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHHSGGGTT-----CCCCCCC--CCSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHCCCC-----CCCCCCC--CCCCCHHHHHHHHHHH
T ss_conf 7999999999999997-99999999998958999999999701223-----4334547--7647789999999999
No 205
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.38 E-value=0.19 Score=28.54 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHC--CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8999899999999708--899988999986589011458999999841321256743
Q T0617 37 GIGMTEWRIISVLSSA--SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 37 glt~~q~~iL~~l~~~--~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
+++..|..|...|... .|+-.++|....++..+.+.+.++.||.++||....+-.
T Consensus 34 ~l~~eE~lVY~~Ie~aGn~GIWtkdIr~ktnL~~~~l~K~LK~LEsk~lIKsVksV~ 90 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVS 90 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEECCSC
T ss_pred CCCHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 899899999999997176765499999880998899999999986348836211224
No 206
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=91.34 E-value=0.26 Score=27.70 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999984
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
.||+.|+.||..+. .|.+.++||+.++++..||...+.++-++
T Consensus 16 ~LT~rE~~vl~ll~--~G~s~~eIA~~L~iS~~TV~~h~~~i~~K 58 (79)
T 1x3u_A 16 TLSERERQVLSAVV--AGLPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp HHCHHHHHHHHHHT--TTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--HCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 39999999999999--36999999889897899999999999998
No 207
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406}
Probab=90.84 E-value=0.17 Score=28.97 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=29.8
Q ss_pred HHHHHHHHCC----CCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9999997088----999889999865890114589999998
Q T0617 44 RIISVLSSAS----DCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 44 ~iL~~l~~~~----~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
++..++.+.+ .+|+.+||..+|+++.++||+.++|+.
T Consensus 154 R~~~~L~~~~~i~~~~t~~~iA~~lG~sr~tlSRi~k~~~~ 194 (194)
T 3dn7_A 154 QYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKYIS 194 (194)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 99999986915356979999998979889999999998619
No 208
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=90.76 E-value=0.18 Score=28.69 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=37.6
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999708899988999986589011458999999841321256
Q T0617 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
..+.-.|. .||.|..|||+.+++++..+.++++-|...|+++...
T Consensus 28 L~lfd~L~-~gp~t~~eLA~~~g~~~~~l~rlL~~L~a~Gil~e~~ 72 (332)
T 3i53_A 28 LRVADHIA-AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDG 72 (332)
T ss_dssp HTHHHHHH-TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CCHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC
T ss_conf 79678962-7999999999887909899999999999889189558
No 209
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=90.63 E-value=0.38 Score=26.58 Aligned_cols=49 Identities=6% Similarity=0.083 Sum_probs=29.0
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999970889998899998658901145899999984132125674
Q T0617 42 EWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 42 q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
+-.++..+...|+.|..+++..++++.+-+...+..+++.|++.+...+
T Consensus 156 ~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~rD~~~ 204 (218)
T 3cuq_B 156 VASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSV 204 (218)
T ss_dssp HHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEESS
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 9999999713899689999999698899999999999977978997887
No 210
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=90.47 E-value=0.14 Score=29.42 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=30.4
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 99889999865890114589999998413212
Q T0617 55 CSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
.+-.+||+.+++++.||-+.++.|+..|||.|
T Consensus 37 PsE~eLa~~~gVSR~TvR~AL~~L~~eGlI~r 68 (248)
T 3f8m_A 37 PAEREIAEQFEVARETVRQALRELLIDGRVER 68 (248)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEC
T ss_conf 46999999979699999999999997077620
No 211
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=90.34 E-value=0.3 Score=27.30 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 89998999999997088999889999865890114589999998413
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKY 83 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gl 83 (148)
.||+.|..||..+. .|.+.++||+.++++..||...++++-++==
T Consensus 29 ~LT~rE~evl~ll~--~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl~ 73 (91)
T 2rnj_A 29 MLTEREMEILLLIA--KGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHHHH--TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 26999999999999--2899999999978888799999999999809
No 212
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=90.13 E-value=0.35 Score=26.85 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999984
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
.||+.|+.||..+. .|.+.++||+.++++..||...++++-+|
T Consensus 159 ~LT~RE~eVL~ll~--~G~snkeIA~~L~iS~~TVk~h~~~I~~K 201 (225)
T 3klo_A 159 KLTKREQQIIKLLG--SGASNIEIADKLFVSENTVKTHLHNVFKK 201 (225)
T ss_dssp TSCHHHHHHHHHHT--TTCCHHHHHHHTTCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 43178999999997--49979999999798999999999999998
No 213
>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=90.08 E-value=0.25 Score=27.84 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99899999999708-89998899998658901145899999984132125
Q T0617 39 GMTEWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 39 t~~q~~iL~~l~~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
...+=.||.++.+. .|++..+||+.+++++--|++.+.+|.+.|-|...
T Consensus 9 ~d~eqkVL~~L~eaG~p~~a~~iA~~~gv~KKeVnk~l~~LKkegki~sp 58 (67)
T 2heo_A 9 DNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSP 58 (67)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 47899999999976897879999999887889999999999877680589
No 214
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=89.97 E-value=0.58 Score=25.36 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 2899989999999970889998899998658901145899999984
Q T0617 36 FGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
..||..|..||..+. .|.|.+|||..++++..||...+++.-+|
T Consensus 172 ~~LT~RE~evL~l~a--~G~s~~eIA~~L~iS~~TV~~h~~~i~~K 215 (234)
T 1l3l_A 172 AWLDPKEATYLRWIA--VGKTMEEIADVEGVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCHHHHHHHHHHT--TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 889989999999997--59999999999698999999999999998
No 215
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=89.54 E-value=0.54 Score=25.60 Aligned_cols=54 Identities=9% Similarity=0.145 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999899999999708899988999986589011458999999841321256743
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
++.-+-.+|..+...|..|+.+|+..++.++.-+...+..|++.|++-+.....
T Consensus 152 l~~d~~~il~~a~~~g~vT~~~L~~~lgWs~~ra~~~Le~l~~~GllwiD~q~~ 205 (234)
T 3cuq_A 152 LNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAP 205 (234)
T ss_dssp CCHHHHHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEESSSS
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 216999999999846992799999996979999999999999689989978999
No 216
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=89.51 E-value=0.52 Score=25.70 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 8999899999999708899988999986589011458999999841
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKK 82 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~g 82 (148)
.||+.|..||..+. .|.+.++||..++++..||...++++-++=
T Consensus 197 ~lt~re~~il~~~~--~G~~~~~iA~~l~is~~tv~~h~~~~~~kl 240 (258)
T 3clo_A 197 ILSEREKEILRCIR--KGLSSKEIAATLYISVNTVNRHRQNILEKL 240 (258)
T ss_dssp SSCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 79906999999998--479999999996988999999999999985
No 217
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=89.11 E-value=0.5 Score=25.80 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 998999999997088999889999865890114589999998413212567
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
+..+..++.+.-.+++.+..+|++.+++++..|...+..|.+.|.+++..|
T Consensus 163 d~~~~~~l~~~l~~~~~t~eela~~l~~~~~~V~~~l~~l~~~g~~~~~~d 213 (232)
T 2qlz_A 163 DMTQLAILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVKIIND 213 (232)
T ss_dssp CTTHHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETT
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf 477789998724158566899998869498999999999872064047348
No 218
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=89.10 E-value=0.061 Score=31.90 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=32.4
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98899998658901145899999984132125674
Q T0617 56 SVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 56 t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
+..+||+.+++++++|.+.++.|+..|+|++.+..
T Consensus 37 s~r~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 71 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGAL 71 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 89999999797999999999999988967997487
No 219
>1jhg_A Trp operon repressor; complex (regulatory protein/peptide), DNA-binding regulatory protein; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 1trr_A* 1tro_A*
Probab=88.96 E-value=1 Score=23.79 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=46.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH---HH---HCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 973211567764999999999999999999999872899989999999---97---088999889999865890114589
Q T0617 1 SNAMQKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISV---LS---SASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 1 ~~am~~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~---l~---~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
+.||.+..-+++-.+ +..+...-.......+.... +|+.+...|.- |. ..|..|+.+|++.+|++.+||||.
T Consensus 1 ~~~m~~~~~~~w~~l-~~~l~~~~~~~e~~~fl~dL-lT~~E~~~la~R~~ia~~Ll~g~~s~reIa~~~gvS~aTItR~ 78 (101)
T 1jhg_A 1 SAAMAEQRHQEWLRF-VDLLKNAYQNDLHLPLLNLM-LTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG 78 (101)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHH-HHHHHHHCCHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 952100023679999-99999845788999999980-9999999999999999999839967999999969865667898
Q ss_pred HHHHHH
Q ss_conf 999998
Q T0617 75 VKKLEE 80 (148)
Q Consensus 75 i~~L~~ 80 (148)
-+-|..
T Consensus 79 s~~Lk~ 84 (101)
T 1jhg_A 79 SNSLKA 84 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999885
No 220
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=88.69 E-value=0.81 Score=24.40 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9998999999997088999889999865890114589999998
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
|++.|-.++.. ....+++..|||+.+++|+++|...+.+-.+
T Consensus 26 L~~~qr~v~~l-~~~~~ls~~EIA~~lgiS~~~V~~~l~Ra~~ 67 (113)
T 1xsv_A 26 LTNKQRNYLEL-FYLEDYSLSEIADTFNVSRQAVYDNIRRTGD 67 (113)
T ss_dssp SCHHHHHHHHH-HHTSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 88999999999-9982865999999989699999999999999
No 221
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=88.43 E-value=0.9 Score=24.11 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999984
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
.||..|+.+|..+.. |.+.+++|+.++++..||...++++-+|
T Consensus 154 ~LT~rE~evl~ll~~--g~sn~~Ia~~l~is~~TV~~hi~~i~~K 196 (215)
T 1a04_A 154 QLTPRERDILKLIAQ--GLPNKMIARRLDITESTVKVHVKHMLKK 196 (215)
T ss_dssp GSCHHHHHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC--CCCCCHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 279899999999984--9983422898787587999999999998
No 222
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=88.29 E-value=0.19 Score=28.58 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=40.9
Q ss_pred HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 0889998899998658901145899999984132125674322300000178889999
Q T0617 51 SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 51 ~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
..||.|..|||..+++++..+.++++-|...|++++. |+ .+.+|+.+..+.
T Consensus 52 ~~gp~t~~eLA~~~g~~~~~l~rlL~~L~~~gll~~~----~g---~y~lt~~s~~l~ 102 (348)
T 3lst_A 52 VDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRES----DG---RFALTDKGAALR 102 (348)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----TT---EEEECTTTGGGS
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE----CC---EEECCHHHHHHH
T ss_conf 2899899999988790989999999999988988944----99---474268799984
No 223
>2b0l_A GTP-sensing transcriptional pleiotropic repressor CODY; DNA-binding, nucleotide-binding, transcription regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=88.26 E-value=0.43 Score=26.25 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHC-----CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8999899999999708-----899988999986589011458999999841321256743
Q T0617 37 GIGMTEWRIISVLSSA-----SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 37 glt~~q~~iL~~l~~~-----~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
.|+.++......|... |-+..+.||++.|++++.+-..+.+++..|.|+.+...-
T Consensus 21 tLSySEleAi~hIf~eL~g~EG~lvASkIADrvgITRSVIVNALRKlESAGvIESRSlGM 80 (102)
T 2b0l_A 21 SLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGM 80 (102)
T ss_dssp TSCHHHHHHHHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 737879999999999728965435308666762972899999998764346134115777
No 224
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=88.19 E-value=0.95 Score=23.93 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999899999999708899988999986589011458999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
|++.|..++..-. ..+.|..++|+.+|++.++|...+.+-.
T Consensus 23 L~~~qR~vi~L~~-~~~ls~~EIA~~lgis~~~V~~~l~Ra~ 63 (113)
T 1s7o_A 23 LTDKQMNYIELYY-ADDYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp SCHHHHHHHHHHH-HTCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999999999-9731299999998979999999999999
No 225
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus, viral protein; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=88.10 E-value=1.3 Score=22.95 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 9989999999970889998899998658----901145899999984132125674322300000178889999999999
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i----~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
-.++..+|.+|.+++|+..-+|-...+- +..+.--.-+-|...|+|+-++. +..+.+.||++|+-+.-.+.+.
T Consensus 7 fypeaivl~y~ydnegiatydlykkvna~fpmstatfydakkfliqegfi~e~qe---~gek~~yltekgklfaislk~~ 83 (99)
T 1tbx_A 7 FYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQE---RGEKRLYLTEKGKLFAISLKTA 83 (99)
T ss_dssp BCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCEEHHHHHHHHCCCCCCCHHEEHHHHHHHHHHHHHHHHHH---CCCEEEEEECCCEEEEEEECHH
T ss_conf 5811168899964888211427877456686531010346878888674788876---6843689812771899983327
Q ss_pred H
Q ss_conf 9
Q T0617 115 A 115 (148)
Q Consensus 115 ~ 115 (148)
.
T Consensus 84 i 84 (99)
T 1tbx_A 84 I 84 (99)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 226
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant protein; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=88.05 E-value=0.49 Score=25.87 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHCC-CCCHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHCCCCC----CCCCEECCCCCHHHHHH
Q ss_conf 98999999997088-99988999986589011---45899999984132125674----32230000017888999
Q T0617 40 MTEWRIISVLSSAS-DCSVQKISDILGLDKAA---VSRTVKKLEEKKYIEVNGHS----EDKRTYAINLTEMGQEL 107 (148)
Q Consensus 40 ~~q~~iL~~l~~~~-~~t~~eLa~~l~i~~~~---vs~~i~~L~~~gli~r~~~~----~D~R~~~l~LT~~G~~~ 107 (148)
..++.+.-.|..+| |+|..|||+.+++++.. +.|++.-|...|++.+.... .......+.+|+.++.+
T Consensus 30 A~elglfd~L~~~g~p~t~~eLA~~~g~~~~~~~~L~r~Lr~L~~~gl~~~~~~~~~~~~~~~~~~~~~t~~s~~l 105 (358)
T 1zg3_A 30 AMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLL 105 (358)
T ss_dssp HHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHTT
T ss_pred HHHCCCHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 9987817899756999799999987394946778999999999977950553134444565554301167868998
No 227
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae}
Probab=87.91 E-value=0.32 Score=27.08 Aligned_cols=55 Identities=15% Similarity=0.264 Sum_probs=40.8
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHH
Q ss_conf 9997088999889999865890114589999998413212567432230000017888999
Q T0617 47 SVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQEL 107 (148)
Q Consensus 47 ~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~ 107 (148)
-.|. .|+.|..+||+.+++++..+.++++-|...|++++... |+ .+.+|+.+..+
T Consensus 65 d~L~-~gp~t~~eLA~~~g~~~~~l~rlLr~L~~~Gll~e~~~--~~---~~~~t~~s~~l 119 (369)
T 3gwz_A 65 ELLQ-EGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGH--DD---LFAQNALSAVL 119 (369)
T ss_dssp GGGT-TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSS--TT---EEECCHHHHTT
T ss_pred HHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC--CC---EEECCHHHHHH
T ss_conf 8986-69999999998879198999999999997896799689--97---47568888974
No 228
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=87.85 E-value=0.51 Score=25.77 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89998999999997088999889999865890114589999998413212567
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
.++.-+-.+|..+...|..|+.+|+..++.++.-+...+..|++.|++-....
T Consensus 164 el~~D~~~il~~~~~~g~vt~~~L~~~lgWs~~ra~~~L~~l~~~Gl~wvD~q 216 (233)
T 1u5t_A 164 ELTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQ 216 (233)
T ss_dssp CCCTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEECS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 35358999999998669918999998879699999999999997799899789
No 229
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=87.79 E-value=0.52 Score=25.69 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=36.2
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999708899988999986589011458999999841321256
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
+.-.| ..|+.|..|||+.+++++..+.|+++-|...|+++...
T Consensus 41 lfd~L-~~gp~t~~eLA~~~g~~~~~l~rlLr~L~a~gll~~~~ 83 (374)
T 1qzz_A 41 LVDHL-LAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGE 83 (374)
T ss_dssp HHHHH-HTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCC
T ss_pred HHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEC
T ss_conf 67896-07998999999885919899999999998789368757
No 230
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=87.71 E-value=0.69 Score=24.86 Aligned_cols=51 Identities=14% Similarity=0.333 Sum_probs=38.0
Q ss_pred CHHHHHHHH---CC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 988999986---58-90114589999998413212567432230000017888999999999
Q T0617 56 SVQKISDIL---GL-DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 56 t~~eLa~~l---~i-~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
|.+.|-..| |+ +++|-+.+|..|.++|||++. ...+..|+.|+.++..+..
T Consensus 478 Te~tLi~~Me~~GIGTpATra~iI~~L~~r~Yi~~~-------~~~l~~T~~G~~l~~~l~~ 532 (592)
T 1mw9_X 478 SEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVE-------NRRFYAEKMGEIVTDRLEE 532 (592)
T ss_dssp CHHHHHHHHHHTTCCCTTTHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEC-------CCEEEECHHHHHHHHHHHH
T ss_conf 989999999837999624789999999867989940-------9888575789999999987
No 231
>2pg4_A Uncharacterized protein; NP_147569.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE CIT; 2.21A {Aeropyrum pernix K1} SCOP: a.4.5.48
Probab=87.62 E-value=1.4 Score=22.76 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=47.8
Q ss_pred HCC-CCCHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 088-9998899998658901145-899999984132125674322300000178889999999999
Q T0617 51 SAS-DCSVQKISDILGLDKAAVS-RTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 51 ~~~-~~t~~eLa~~l~i~~~~vs-~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
..| +.+..+|.++.|++.-+.- .+-++|...|+|.-..-+ -|.+.+.||++|+.+.+-+...
T Consensus 26 kkgyepslaeivkasgvsektffmglkdrliraglvkeetls--yrvktlkltekgrrlaeclekc 89 (95)
T 2pg4_A 26 KKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLS--YRVKTLKLTEKGRRLAECLEKC 89 (95)
T ss_dssp HTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEE--TTEEEEEECHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 626883099999872853667754448899995002576766--6554201405325899999999
No 232
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A*
Probab=87.58 E-value=0.41 Score=26.37 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=37.6
Q ss_pred CHHHHHHHH---CC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 988999986---58-90114589999998413212567432230000017888999999999
Q T0617 56 SVQKISDIL---GL-DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 56 t~~eLa~~l---~i-~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
|.+.|-..| |+ +++|-+.+|..|.++|||++. ...+..|+.|+.+++-+..
T Consensus 446 TEasLi~~ME~~GIGTpATra~iIe~L~~R~Yi~~~-------~k~l~pT~~G~~li~~l~~ 500 (633)
T 2gai_A 446 TEGSLVKEMERLGIGRPSTYASTIKLLLNRGYIKKI-------RGYLYPTIVGSVVMDYLEK 500 (633)
T ss_dssp CHHHHHHHHHHHTCCCTTTHHHHHHHHHHTTSEEEE-------TTEEEEBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEC-------CCEEEECHHHHHHHHHHHH
T ss_conf 899999877746988305699999988626818633-------9625761799999999987
No 233
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=87.32 E-value=1.2 Score=23.27 Aligned_cols=30 Identities=13% Similarity=0.302 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 889998899998658901145899999984
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
..+.|..+++..++++...+...+..+...
T Consensus 113 ~~~pt~~e~a~~l~~~~~~~~~~l~~~~~~ 142 (239)
T 1rp3_A 113 GREPTDEEVAKELGISTEELFKTLDKINFS 142 (239)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 479999999541499899999998720343
No 234
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=87.25 E-value=0.31 Score=27.16 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 899989999999970889998899998658901145899
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
-||..|+.....+...| .++++||+.+||+++|+.+.+
T Consensus 5 ~lt~~q~~~a~~l~~~G-~~~~~IA~~~gVSr~TlYryl 42 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-HPRQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-CCHHHHHHTTSCCHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHC
T ss_conf 69999999999999878-989999999797999999985
No 235
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=87.18 E-value=0.45 Score=26.12 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=36.4
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999708899988999986589011458999999841321256
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
++-.| ..|+.|..|||+.+++++..+.++++-|...|++++..
T Consensus 44 lfd~L-~~gp~t~~eLA~~~g~~~~~l~rlLr~L~~~Gll~~~~ 86 (360)
T 1tw3_A 44 LVDHI-LAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA 86 (360)
T ss_dssp HHHHH-HTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEC
T ss_conf 77897-46998999999887909999999999998679699508
No 236
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=87.06 E-value=1.5 Score=22.55 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 2899989999999970889998899998658901145899999984
Q T0617 36 FGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
..||+.|..||..+.. |.|.+|||..++++..||...+++.-+|
T Consensus 174 ~~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~h~~~i~~K 217 (236)
T 2q0o_A 174 QMLSPREMLCLVWASK--GKTASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp GSCCHHHHHHHHHHHT--TCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 6599999999999873--9999999999699999999999999998
No 237
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=87.04 E-value=0.075 Score=31.27 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=32.1
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98899998658901145899999984132125674
Q T0617 56 SVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 56 t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
+..+||+.+++++.||-+.++.|+..|+|.+.+..
T Consensus 42 sE~~La~~~~vSr~TvR~Al~~L~~eGlI~~~~G~ 76 (247)
T 2ra5_A 42 NEIELAARLGLSRPTVRQAIQSLVDKGLLVRRRGV 76 (247)
T ss_dssp --------------------------CEEEEEC--
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 79999999796999999999999976977966896
No 238
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=86.72 E-value=0.74 Score=24.67 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 89999999970889998899998658901145899999984
Q T0617 41 TEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 41 ~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
.|..+|..+.. |.|.++||+.++++++||...+.++-++
T Consensus 2 RE~evl~ll~~--G~s~~eIA~~l~iS~~TV~~~~~~i~~K 40 (61)
T 2jpc_A 2 RERQVLKLIDE--GYTNHGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHHHHHT--SCCSHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 79999999982--7999999989699999999999999998
No 239
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=86.45 E-value=0.4 Score=26.42 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=26.5
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99999708899988999986589011458999
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
+|..+...-++|+.+||+.+|++++++|++++
T Consensus 12 ~Lk~~~~~~glsq~~lA~~lgvs~~~is~ie~ 43 (94)
T 2ict_A 12 IIQESLDELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999699999999996877588999984
No 240
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=86.32 E-value=1.4 Score=22.88 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHHCCCCHHHHHHHHH---HH--HCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9872899989999999---97--08899988999986589011458999999
Q T0617 33 TQKFGIGMTEWRIISV---LS--SASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~---l~--~~~~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
.... +|+.+...|.- |. -..|.+..+|++.+|++..||+|+-+-|.
T Consensus 33 l~dL-~T~~E~~~la~R~~ia~lL~~g~syreIa~~~gvS~aTIsRv~r~L~ 83 (107)
T 3frw_A 33 FEDV-CTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISRVNRSLN 83 (107)
T ss_dssp HHHH-SCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHH-CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9982-99999999999999999988699999999996987575899999987
No 241
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=85.99 E-value=0.77 Score=24.56 Aligned_cols=57 Identities=9% Similarity=0.168 Sum_probs=45.0
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCC
Q ss_conf 9999997088999889999865890114589999998413212567432230000017
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLT 101 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT 101 (148)
.+..++-..+..+.+-|-+++.+--..++++++.||+.|+|.- .+....|.+.+...
T Consensus 14 ~a~~~V~~~~~aS~S~lQR~~~IGynRAariid~LE~~GiVsp-~~g~~~ReVLv~~~ 70 (73)
T 2ve8_A 14 EAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTP-MNTNGSREVIAPAP 70 (73)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCC-CCTTSCCCBCSCCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-CCCCCCCEEECCCC
T ss_conf 9999999818644899999971161699999999999768788-77898886748999
No 242
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=85.96 E-value=0.35 Score=26.85 Aligned_cols=61 Identities=18% Similarity=0.040 Sum_probs=45.9
Q ss_pred HHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHH
Q ss_conf 99708899988999986589011458999999841321256743223000001788899999999
Q T0617 48 VLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
Q Consensus 48 ~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 112 (148)
.+.. .+++..+||+.+++++++|++++++..+.|-+.-.+...+++.+ +||.-.+.+.+..
T Consensus 36 ~l~~-~G~s~r~iArr~~VS~~~V~kil~R~retG~i~p~~~gg~rp~~---~tp~~~~~I~~~~ 96 (159)
T 2k27_A 36 DLAH-QGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKV---ATPKVVEKIGDYK 96 (159)
T ss_dssp HHHH-HTCCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCC---CCTTHHHHHHHHH
T ss_pred HHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCHHHHHHHHHHH
T ss_conf 9998-69999999999885888999999999854887877788989987---7889999999999
No 243
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
Probab=85.77 E-value=1.1 Score=23.57 Aligned_cols=43 Identities=9% Similarity=0.153 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 89998999999997088999889999865890114589999998
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
.|++.+-.++. +....+++..|||+.++++.++|...+.+-.+
T Consensus 15 ~Lp~~~r~v~~-l~~~~g~s~~EIA~~l~is~~tvk~~l~rar~ 57 (70)
T 2o8x_A 15 DLTTDQREALL-LTQLLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp SSCHHHHHHHH-HHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 79999999999-89990999999999989799999999999999
No 244
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=85.36 E-value=0.99 Score=23.81 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=37.5
Q ss_pred CCCHHHHHH--HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH-HHHHHHCCCCCC
Q ss_conf 899989999--9999708899988999986589011458999999-841321256743
Q T0617 37 GIGMTEWRI--ISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE-EKKYIEVNGHSE 91 (148)
Q Consensus 37 glt~~q~~i--L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~-~~gli~r~~~~~ 91 (148)
+|++-+-.. ...|...-+.|+.+||+.+|++++.||+.++-+. -...+...++|.
T Consensus 23 ~lS~~E~a~~y~rlL~~~~~~tQ~eLA~~lG~Srs~VS~~L~l~~LP~~ii~~i~~~~ 80 (189)
T 3mky_B 23 PTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPG 80 (189)
T ss_dssp CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHHSCHHHHHTSSSGG
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 9999999999999998625758999999979799999999999758999999875428
No 245
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=85.26 E-value=0.43 Score=26.26 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=20.2
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99889999865890114589999
Q T0617 55 CSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
+|.+|||+..|++.+|||+.++.
T Consensus 1 vTi~dIA~~aGVS~sTVSrvLn~ 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 98999999989399999999779
No 246
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=84.89 E-value=1.6 Score=22.52 Aligned_cols=44 Identities=9% Similarity=0.243 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHH---HCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 89998999999997---088999889999865890114589999998
Q T0617 37 GIGMTEWRIISVLS---SASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 37 glt~~q~~iL~~l~---~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
.|++.+..|+..-. ...|.|..+||+.+|+|+..|..+-.+-.+
T Consensus 5 ~L~~rE~~Ii~~ryGl~~~~~~tl~eia~~lgis~erVrqie~~Al~ 51 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 49999999999983899999768999999989699999999999999
No 247
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=84.48 E-value=0.7 Score=24.81 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=25.4
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999708899988999986589011458999
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
|..+...-++|+.+||+.+|++++++++...
T Consensus 14 Lk~lr~~~g~tq~elA~~lgvs~~~i~~~E~ 44 (94)
T 2kpj_A 14 LNSYIAKSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp HHHHHTTSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
T ss_conf 9999999099999999988530056788760
No 248
>2a6c_A Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=84.21 E-value=0.87 Score=24.18 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=26.2
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99999708899988999986589011458999
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
.|..+...-++|+.++|+.+|+++++++++.+
T Consensus 22 ~ir~~R~~~glTq~elA~~~Gis~~~is~iE~ 53 (83)
T 2a6c_A 22 VLQEHLRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHC
T ss_conf 99999999699889999998557635558862
No 249
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=84.11 E-value=1 Score=23.70 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88999889999865890114589999998413212567
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
..|..++||++.++++...+-.+++.|.+.|.|.+..+
T Consensus 18 ~~Pp~v~dla~~l~~~~~~~~~~L~~l~~~G~lv~i~~ 55 (121)
T 2pjp_A 18 DEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVK 55 (121)
T ss_dssp SSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEET
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECC
T ss_conf 79997999999979299999999999997994899539
No 250
>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20
Probab=83.95 E-value=2 Score=21.74 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHCCCC----CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999899999999708899----98899998658901145899999984132125
Q T0617 38 IGMTEWRIISVLSSASDC----SVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~----t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
++..+..+|..++..+.. ...+++...+++.++++..++.|++.|+|++.
T Consensus 288 ~~~~~~~il~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~lI~~~ 341 (357)
T 2fna_A 288 ARKRYLNIMRTLSKCGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE 341 (357)
T ss_dssp GHHHHHHHHHHHTTCBCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 889999999998667984319999999850699999999999999978968998
No 251
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B
Probab=83.92 E-value=0.79 Score=24.47 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89998999999997088999889999865890114589999998413212567
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
.++..|..+|......+++|..+|+..++++...+.+.+..|.+.+++.....
T Consensus 586 ~~s~~Q~~iLllfn~~~~~t~~ei~~~~~~~~~~l~~~L~~L~~~k~l~~~~~ 638 (760)
T 1ldj_A 586 QASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDE 638 (760)
T ss_dssp ECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEECSCT
T ss_pred EECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCC
T ss_conf 96199999999847888878999997779099999999999975896772389
No 252
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=83.75 E-value=1.5 Score=22.67 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHCCCCCC
Q ss_conf 88999889999865890114589999998-41321256743
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKLEE-KKYIEVNGHSE 91 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L~~-~gli~r~~~~~ 91 (148)
..|+|+.+||+.+|+++++||+.++-+.= ..++....++.
T Consensus 22 ~~G~tq~~iA~~lg~srs~VS~~lrl~~LP~~vi~~i~~~~ 62 (192)
T 1zx4_A 22 NDGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQS 62 (192)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCSCGG
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 87999999999989799999999999849999999730667
No 253
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Probab=83.64 E-value=1.5 Score=22.64 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHC----C---CCCHHHHHHH----------HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEC--
Q ss_conf 8999899999999708----8---9998899998----------6589011458999999841321256743223000--
Q T0617 37 GIGMTEWRIISVLSSA----S---DCSVQKISDI----------LGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYA-- 97 (148)
Q Consensus 37 glt~~q~~iL~~l~~~----~---~~t~~eLa~~----------l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~-- 97 (148)
.|+..+.+||.+|-++ | |+|...|... |.++.+.|...++.|.++|+|..... .|...
T Consensus 21 ~Ls~~E~RVLG~LiEKe~TTPd~YPLtLNaL~~aCNQKsnRePVm~lsE~eV~~ald~L~~~~lv~~~~g---sRv~Ky~ 97 (183)
T 2nr3_A 21 QLNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRLVMG---SRADRWE 97 (183)
T ss_dssp CBCHHHHHHHHHHHHHHHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEEEECC---SSCCEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC---CCCHHHH
T ss_conf 6799998889863100235877676319999988504455686556899999999999997888575327---8724777
Q ss_pred ------CCCCHHHHHHHHH
Q ss_conf ------0017888999999
Q T0617 98 ------INLTEMGQELYEV 110 (148)
Q Consensus 98 ------l~LT~~G~~~~~~ 110 (148)
+.+++....++..
T Consensus 98 H~~~~~l~l~~~e~All~~ 116 (183)
T 2nr3_A 98 HKVDKGLELVPAQVILTGL 116 (183)
T ss_dssp ECHHHHHTCCHHHHHHHHH
T ss_pred HCCCHHCCCCHHHHHHHHH
T ss_conf 3020312989899999999
No 254
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=83.58 E-value=0.8 Score=24.44 Aligned_cols=55 Identities=15% Similarity=0.301 Sum_probs=44.1
Q ss_pred HHHCCCCHHHHHHHHHHHHCC-CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 987289998999999997088-999889999865890114589999998413212567
Q T0617 33 TQKFGIGMTEWRIISVLSSAS-DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~-~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
...+| .....++..|...| .++-.+||+.+++++..+-+++.+|...|+|..+..
T Consensus 13 ~~~~G--~~a~~i~~~L~~~~~~l~ee~la~~~~i~~k~vR~iL~~L~~~~lv~~~r~ 68 (110)
T 1q1h_A 13 KSLLG--DDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKT 68 (110)
T ss_dssp HTTSC--STTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHCC--HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99809--699999999998698878999998959999999999999998697240340
No 255
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=82.47 E-value=0.61 Score=25.21 Aligned_cols=21 Identities=10% Similarity=0.347 Sum_probs=17.7
Q ss_pred CHHHHHHHHCCCCCHHHHHHH
Q ss_conf 988999986589011458999
Q T0617 56 SVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 56 t~~eLa~~l~i~~~~vs~~i~ 76 (148)
|++|||+..|+|++||||.++
T Consensus 2 Ti~dIA~~aGVS~~TVSrvLn 22 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHC
T ss_conf 689999998959999999968
No 256
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=82.33 E-value=1 Score=23.70 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=22.1
Q ss_pred HCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 08899988999986589011458999
Q T0617 51 SASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 51 ~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
..-++|+.+||+.+|++++++++..+
T Consensus 27 ~~~gltq~~LA~~lGis~~~is~~e~ 52 (236)
T 3bdn_A 27 NELGLSQESVADKMGMGQSGVGALFN 52 (236)
T ss_dssp TTTTCCSHHHHHHHTSCHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 88499999999997979999999971
No 257
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=82.28 E-value=0.5 Score=25.82 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.6
Q ss_pred CCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9988999986589011458999
Q T0617 55 CSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
+|.+|||+..|+|.+||||.++
T Consensus 3 vTikdIA~~aGVS~~TVSr~Ln 24 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVN 24 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHC
T ss_conf 3799999998969999999977
No 258
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H
Probab=82.08 E-value=2.5 Score=21.11 Aligned_cols=44 Identities=7% Similarity=0.225 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHH---HCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 89998999999997---088999889999865890114589999998
Q T0617 37 GIGMTEWRIISVLS---SASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 37 glt~~q~~iL~~l~---~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
.|+..+-.|+..-. ..++.|..+||..+|+|+..|.++.++-.+
T Consensus 10 ~L~~rer~Ii~~rfGl~~~~~~tl~eIa~~lgiS~erVrqie~~al~ 56 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 09999999999981889999878999999989799999999999999
No 259
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=82.07 E-value=1.3 Score=22.99 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=47.5
Q ss_pred HHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEC---CCCCHHHHHHHHHHH
Q ss_conf 9999999708-899988999986589011458999999841321256743223000---001788899999999
Q T0617 43 WRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYA---INLTEMGQELYEVAS 112 (148)
Q Consensus 43 ~~iL~~l~~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~---l~LT~~G~~~~~~~~ 112 (148)
|.+|..+... .+.+ .+.++++..-...++.-|.+.|||.-..-..+.-.+. ..+|.+|.+++.+-.
T Consensus 8 Y~ILK~~~~~~~~l~----~e~~~Ise~~~~~il~mL~d~GyI~Gv~~~~~~~~v~~~~~~IT~~Gl~YL~ENS 77 (102)
T 2hgc_A 8 YAILKEIFEGNTPLS----ENDIGVTEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKENG 77 (102)
T ss_dssp HHHHHHHHHHCSCCC----HHHHTSCHHHHHHHHHHHHHHTSEECCEESSSSEECCSSCCEECHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCC----HHHCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCEECHHHHHHHHHCC
T ss_conf 999999871788898----8874989999999999999779742079860799557667725678899999873
No 260
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=81.88 E-value=2.6 Score=21.06 Aligned_cols=53 Identities=8% Similarity=0.165 Sum_probs=40.0
Q ss_pred CCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9998999-999997088999889999865890114589999998413212567432
Q T0617 38 IGMTEWR-IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 38 lt~~q~~-iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
+|..+=. ++..+ +. |.++.++|..++++.++++.++++-.+-.-.....+|..
T Consensus 23 ~T~e~K~eiv~~~-e~-G~s~~~vAre~gi~~sTl~~wvK~~~ki~~~~~~~~~~~ 76 (87)
T 2elh_A 23 LTPRDKIHAIQRI-HD-GESKASVARDIGVPESTLRGWCKNEDKLRFMSRQSATDN 76 (87)
T ss_dssp CCHHHHHHHHHHH-HH-TCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCHHHHHHHHHHH-HC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 4999999999999-97-998999999989788799999997999998876038641
No 261
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=81.87 E-value=0.8 Score=24.44 Aligned_cols=30 Identities=13% Similarity=0.411 Sum_probs=24.2
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 999970889998899998658901145899
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
|..+....++|+.+||+.+|+++++++++.
T Consensus 12 l~~lr~~~g~s~~~LA~~~Gvs~~tis~ie 41 (78)
T 3b7h_A 12 LMELITQQNLTINRVATLAGLNQSTVNAMF 41 (78)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999949989999999892999999998
No 262
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=81.59 E-value=0.64 Score=25.06 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 8899988999986589011458999
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
....|.+|||+..|+|.+|||+.++
T Consensus 8 ~k~vTikdIA~~aGVS~~TVSraLn 32 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLR 32 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9997699999998959999999978
No 263
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=81.48 E-value=0.96 Score=23.92 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=25.3
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 999997088999889999865890114589
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
-+..+...-++|+.++|+.+|++++++++.
T Consensus 15 ~ik~lR~~~gltQ~elA~~lgvs~~tv~~w 44 (73)
T 3fmy_A 15 FIVKVRKKLSLTQKEASEIFGGGVNAFSRY 44 (73)
T ss_dssp HHHHHHHHTTCCHHHHHHHHCSCTTHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999986999999999979899999999
No 264
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102}
Probab=81.47 E-value=0.71 Score=24.80 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 8999899999999708899988999986589011458999
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
...+.+. |..+...-++|+.+||+.+|++++++|++++
T Consensus 16 p~hPGe~--Lke~~~~~glsq~eLA~~lGis~~~is~ie~ 53 (104)
T 3cec_A 16 PIHPGEV--IADILDDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp CCCHHHH--HHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHH--HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9885099--9999998799899999996867999999982
No 265
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=80.95 E-value=1.1 Score=23.54 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89998999999997088999889999865890114589999998413212567
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
.++..+-.++..+. .++.+..+|+...+++.+.+...+-.||=+|+|++.+.
T Consensus 325 ~l~~~e~~il~~l~-~~~~~~d~l~~~~~l~~~~~~~~L~~LEl~G~V~~~~G 376 (382)
T 3maj_A 325 PDTGDRTRILALLG-PSPVGIDDLIRLSGISPAVVRTILLELELAGRLERHGG 376 (382)
T ss_dssp CCTTHHHHHHHHCC-SSCEEHHHHHHHHCCCHHHHHHHHHHHHHTTCCEECTT
T ss_pred CCCHHHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 89868999998659-99988999999989099999999999997696784599
No 266
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=80.70 E-value=0.59 Score=25.32 Aligned_cols=37 Identities=5% Similarity=0.162 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHCCCC-CHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9899999999708899-988999986589011458999
Q T0617 40 MTEWRIISVLSSASDC-SVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 40 ~~q~~iL~~l~~~~~~-t~~eLa~~l~i~~~~vs~~i~ 76 (148)
.++=.++..|.+.-+. |+++||+.+|+++++++...+
T Consensus 5 ~~~ee~l~Rl~e~~g~~sq~eLA~~lgvs~~tis~~~~ 42 (189)
T 2fjr_A 5 WSNVDVLDRICEAYGFSQKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 67899999999984987799999997969999999995
No 267
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=80.59 E-value=0.54 Score=25.59 Aligned_cols=40 Identities=13% Similarity=0.245 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8899988999986589011458999999841321256743
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
...+|.-+|++.++++++.+.|++=+|.+.|+|...++-.
T Consensus 27 ~~~iTAi~Is~kL~i~K~~INrQLYkL~~eG~v~mVpsnP 66 (75)
T 1sfu_A 27 NDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNP 66 (75)
T ss_dssp TCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSS
T ss_pred CCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 4422199999886300878889999998689654424999
No 268
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343}
Probab=80.50 E-value=0.88 Score=24.16 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=24.9
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999708899988999986589011458999
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
|..+...-++|+.++|+.+|++++++++..+
T Consensus 15 ik~~r~~~glsq~~lA~~~gvs~~~is~~e~ 45 (76)
T 3bs3_A 15 IKVVLAEKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999999399899999998989999999986
No 269
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=80.45 E-value=1 Score=23.80 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89998999999997088999889999865890114589999
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
+..++++..=.++ ..-++|+.+||+.+|+++++++++++.
T Consensus 8 p~hPGeiL~~e~l-~~~glsq~eLA~~lGvs~~~is~i~~G 47 (113)
T 2eby_A 8 PTTPGDILLYEYL-EPLDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp CCCHHHHHHHHTT-TTTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHC
T ss_conf 7582299999988-767999999999959999999999828
No 270
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=80.29 E-value=1.4 Score=22.86 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 90114589999998413212567432230000017888999999999
Q T0617 67 DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 67 ~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
+++|-+.+|..|.++|||++. ...+..|+.|..+++.+..
T Consensus 524 tpAT~a~iI~~L~~R~Yv~~~-------~k~l~pT~~G~~l~~~L~~ 563 (659)
T 1i7d_A 524 TEATRAGIIELLFKRGFLTKK-------GRYIHSTDAGKALFHSLPE 563 (659)
T ss_dssp CTTTHHHHHHHHHHTTSEEES-------SSEEEECHHHHHHHHHSCH
T ss_pred CCCCHHHHHHHHHHCCCEEEE-------CCEEEECHHHHHHHHHHHH
T ss_conf 627799999999868949951-------9888476789999999998
No 271
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA- binding, helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=80.27 E-value=1.2 Score=23.22 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHH
Q ss_conf 589011458999999841321256743223000001788899999999
Q T0617 65 GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
Q Consensus 65 ~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 112 (148)
+++..-+.++++.|...||++...+ ...-...+.||++|++++..-.
T Consensus 64 ~~~~~~~~~li~~Li~~g~L~e~~~-~~~~~~~~~lt~kg~~~L~~~~ 110 (134)
T 3aaf_A 64 DQTESWWKAFSRQLITEGFLVEVSR-YNKFMKICALTKKGRNWLHKAN 110 (134)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEC-SSTTCEEEEECHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCEEECC-CCCCEEEEEECHHHHHHHHHCC
T ss_conf 6899999999999998698012205-5861347777888999985065
No 272
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=79.88 E-value=0.95 Score=23.94 Aligned_cols=27 Identities=4% Similarity=0.024 Sum_probs=17.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999998579998999999999999998
Q T0617 118 REKQLLEEFEEAEKDQLFILLKKLRNK 144 (148)
Q Consensus 118 ~~~~~~~~l~~ee~~~l~~~L~~l~~~ 144 (148)
........++.++...+.....-..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (111)
T 1b0n_A 82 VRDAMTSGVSKKQFREFLDYQKWRKSQ 108 (111)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 998861877899999999689999871
No 273
>2co5_A Viral protein F93; viral protein/winged helix, winged helix, DNA-binding, HTH, WHTH, disulfide bond, STIV, archaea; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=79.86 E-value=2.5 Score=21.20 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHCCC-----CCHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHH
Q ss_conf 99989999999970889-----998899998658--90114589999998413212567432230000017888999999
Q T0617 38 IGMTEWRIISVLSSASD-----CSVQKISDILGL--DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~-----~t~~eLa~~l~i--~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~ 110 (148)
+...-|.+|.++.-+|. ---+++-.++.+ +.+..-.+++.|..+..++-...|+ .+.++||++|.+-+++
T Consensus 7 mrinyyiilkvlvingsrlekkrlrseilkrfdidisdgvlyplidsliddkilreeeapd---gkvlfltekgmkefee 83 (99)
T 2co5_A 7 MRINYYIILKVLVINGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPD---GKVLFLTEKGMKEFEE 83 (99)
T ss_dssp CHHHHHHHHHHHHHTTTEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECCTT---SCEEEECHHHHHHHHH
T ss_pred EEEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCCC---CEEEEEEHHHHHHHHH
T ss_conf 2543588999999816167688889999987287743677145578776077762320899---6099985100578999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q T0617 111 ASDFAIERE 119 (148)
Q Consensus 111 ~~~~~~~~~ 119 (148)
+.+..+.+.
T Consensus 84 lheffkkiv 92 (99)
T 2co5_A 84 LHEFFKKIV 92 (99)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999998782
No 274
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=79.79 E-value=1.9 Score=21.99 Aligned_cols=34 Identities=3% Similarity=0.023 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999999970889998899998658901145899
Q T0617 42 EWRIISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 42 q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
=-..|..+...-++|+.|||+.+++++++++++-
T Consensus 14 iG~~Ir~~R~~~gltq~elA~~~gvs~~~is~~E 47 (91)
T 1x57_A 14 VGKVIQQGRQSKGLTQKDLATKINEKPQVIADYE 47 (91)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999818869999998099999999997
No 275
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=79.66 E-value=1.3 Score=23.13 Aligned_cols=46 Identities=9% Similarity=0.253 Sum_probs=39.2
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99970889998899998658901145899999984132125674322
Q T0617 47 SVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 47 ~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
.-|+ .++.|.-+|++.+.+.++.|.+++=.|.+.|+|...++..-+
T Consensus 24 ~ni~-~E~~TAieisrqLniEK~~INkqLYkLq~~g~v~mvp~nPPk 69 (82)
T 1oyi_A 24 KTIG-IEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPR 69 (82)
T ss_dssp HHHS-SSTEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCE
T ss_pred HHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCC
T ss_conf 8503-325079999999867599999999999856555416899960
No 276
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi}
Probab=79.18 E-value=1 Score=23.69 Aligned_cols=30 Identities=7% Similarity=0.096 Sum_probs=23.8
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 999970889998899998658901145899
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
|..+...-|+|+.+||+.+|+++++++++-
T Consensus 19 lk~~R~~~gltq~elA~~lgvs~~~is~~E 48 (86)
T 3eus_A 19 LRQARLDAGLTQADLAERLDKPQSFVAKVE 48 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999849999999999796999999998
No 277
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=78.84 E-value=1.4 Score=22.89 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99999708899988999986589011458999
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
-|..+...-++|+.++|+.+|++++++++.-+
T Consensus 27 ~Lk~lR~~~glTq~elA~~lgvs~~tis~~E~ 58 (111)
T 3mlf_A 27 TLKELRTDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp EHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 99999998299999999997988989999987
No 278
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=78.81 E-value=1.4 Score=22.91 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=17.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9998579998999999999999998
Q T0617 120 KQLLEEFEEAEKDQLFILLKKLRNK 144 (148)
Q Consensus 120 ~~~~~~l~~ee~~~l~~~L~~l~~~ 144 (148)
...+..+++.+...+..+...+...
T Consensus 88 ~~~~~~l~~~~~~~i~~~~~~~~~~ 112 (126)
T 3ivp_A 88 ENKIDNFTDADLVIMESVADGIVKS 112 (126)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999749999999999999999983
No 279
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=78.25 E-value=1.2 Score=23.18 Aligned_cols=38 Identities=11% Similarity=0.259 Sum_probs=28.1
Q ss_pred CHHHHH-HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 998999-99999708899988999986589011458999
Q T0617 39 GMTEWR-IISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 39 t~~q~~-iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
++.++. .|..+...-++|+.+||+.+|+++++++++-+
T Consensus 9 ~~~~lg~~lr~~R~~~glsq~~lA~~~gvs~~~is~~E~ 47 (88)
T 2wiu_B 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC
T ss_conf 999999999999998599999997863998999999987
No 280
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=78.05 E-value=1.2 Score=23.31 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=24.8
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 999970889998899998658901145899
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
|..+...-++|+.++|+.+|+++++++++.
T Consensus 8 lk~~r~~~glsq~~lA~~~Gis~~~is~~e 37 (71)
T 1zug_A 8 LKKRRIALKMTQTELATKAGVKQQSIQLIE 37 (71)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
T ss_conf 999999849999999999715899999998
No 281
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=77.57 E-value=0.99 Score=23.82 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 88999889999865890114589999
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
....|.+|||+..|+|.+||||.++.
T Consensus 7 ~~~~Tl~diA~~agVS~~TVSr~Ln~ 32 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 99762999999988499999998589
No 282
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=77.24 E-value=1.3 Score=23.09 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=23.7
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999970889998899998658901145899
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
-|..+...-++|+.++|+.+|++++++++..
T Consensus 14 ~ir~~R~~~gltq~~lA~~~gvs~~~i~~~E 44 (77)
T 2b5a_A 14 TLKKIRTQKGVSQEELADLAGLHRTYISEVE 44 (77)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999809999999989697999999998
No 283
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=77.22 E-value=1.3 Score=23.09 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99999708899988999986589011458999
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
.|..+...-++|+.++|+.+|+++++++++.+
T Consensus 17 ~lk~~R~~~gltq~~lA~~~gis~~~i~~~E~ 48 (74)
T 1y7y_A 17 RLRELRTAKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 99999998099999999898969999999987
No 284
>1kyz_A COMT, caffeic acid 3-O-methyltransferase; lignin, ferulic acid, methylation; HET: SAH FER; 2.20A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1kyw_A*
Probab=77.10 E-value=2.8 Score=20.86 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCC---CCCHHHHHHHHCCCCCH----HHHHHHHHHHHHHHHCCCCCC--CCCEECCCCCHHHHHH
Q ss_conf 999999997088---99988999986589011----458999999841321256743--2230000017888999
Q T0617 42 EWRIISVLSSAS---DCSVQKISDILGLDKAA----VSRTVKKLEEKKYIEVNGHSE--DKRTYAINLTEMGQEL 107 (148)
Q Consensus 42 q~~iL~~l~~~~---~~t~~eLa~~l~i~~~~----vs~~i~~L~~~gli~r~~~~~--D~R~~~l~LT~~G~~~ 107 (148)
+.-+.-.|.++| ++|..+||..++.+.+. +.|++.-|...|++....... +.....+.+|+.+..+
T Consensus 41 eLglfd~La~~g~~~~~s~~elA~~l~~~~~~~~~~l~rllr~L~~~g~~~~~~~~~~~~~~~~~y~lt~~s~~l 115 (365)
T 1kyz_A 41 ELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYL 115 (365)
T ss_dssp HTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHH
T ss_pred HCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEECCCHHHHHH
T ss_conf 878288998569998879999998637578863789999999998658165125555576532102378888975
No 285
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=76.56 E-value=3.7 Score=19.98 Aligned_cols=44 Identities=5% Similarity=0.111 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHH---HHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 8999899999999---7088999889999865890114589999998
Q T0617 37 GIGMTEWRIISVL---SSASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 37 glt~~q~~iL~~l---~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
.|++.+-.|+..- ...+|.|..+||..+|+|+..|.++-++-.+
T Consensus 18 ~L~~rEr~Ii~~RfGl~~~~~~Tl~eI~~~lgiSrerVRQie~~Al~ 64 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 49999999999971778999566999999969889999999999999
No 286
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=76.51 E-value=0.4 Score=26.47 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999889999865890114589999
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
..|.+|||+..|+|.+||||.++.
T Consensus 12 ~vTi~diA~~aGVS~sTVSrvLn~ 35 (355)
T 3e3m_A 12 PVTMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp ------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 976999999988699999999689
No 287
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=75.92 E-value=1.3 Score=23.00 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=19.4
Q ss_pred HHCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 7088999889999865890114589
Q T0617 50 SSASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 50 ~~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
...-++|+.++|+.+|+++++++++
T Consensus 26 R~~~gltQ~elA~~lGis~~~is~~ 50 (92)
T 1lmb_3 26 KNELGLSQESVADKMGMGQSGVGAL 50 (92)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9992999999998888788579999
No 288
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=75.87 E-value=1.5 Score=22.67 Aligned_cols=29 Identities=7% Similarity=0.248 Sum_probs=22.8
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 99970889998899998658901145899
Q T0617 47 SVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 47 ~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
..+...-++|+.++|+.+|++++++++..
T Consensus 7 k~~R~~~~ltq~~la~~~gis~~~is~~E 35 (66)
T 1utx_A 7 KLIREKKKISQSELAALLEVSRQTINGIE 35 (66)
T ss_dssp HHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999859999999997596999999998
No 289
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=75.85 E-value=3.9 Score=19.86 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L 78 (148)
.|++.+..++....-. +.+..|||..++++.++|...+.+-
T Consensus 37 ~L~~~~r~vl~l~~~~-~~s~~EIA~~lgis~~~v~~~~~rA 77 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR-GWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp TSCHHHHHHHHHHHTS-CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 7999999999999994-9999999999896999999999999
No 290
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=75.48 E-value=1.9 Score=21.91 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=26.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 999999970889998899998658901145899
Q T0617 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
...|..+....++|+.++|+.+|+++++++++-
T Consensus 30 g~~lk~lR~~~glSq~elA~~~gis~~~is~iE 62 (99)
T 3g5g_A 30 SFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIE 62 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999909999999999895999999998
No 291
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=75.45 E-value=1.5 Score=22.63 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=28.1
Q ss_pred HHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9708899988999986589011458999999841
Q T0617 49 LSSASDCSVQKISDILGLDKAAVSRTVKKLEEKK 82 (148)
Q Consensus 49 l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~g 82 (148)
+...+|.++.++|..+||+++++.+.++.....|
T Consensus 18 ~~~~~G~s~~~vA~~lGIs~~tl~~W~r~~~~~~ 51 (97)
T 2jn6_A 18 YENSDGASLQQIANDLGINRVTLKNWIIKYGSNH 51 (97)
T ss_dssp HTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred HHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCC
T ss_conf 9983998599999997999350129999985324
No 292
>3gn5_A HTH-type transcriptional regulator MQSA (YGIT/B3021); Zn-binding protein, HTH-XRE DNA binding motif, DNA-binding, transcription regulation; HET: MEQ; 2.15A {Escherichia coli k-12} PDB: 3gn5_B*
Probab=75.36 E-value=1.9 Score=21.95 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9998999999997088999889999865890114589
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
+++.. +..+...-++|+.++|+.+|++++++++.
T Consensus 71 ~~~e~---ir~~R~~~gltq~elA~~lgvs~~ti~~~ 104 (133)
T 3gn5_A 71 VAPEF---IVKVRKKLSLTQKEASEIFGGGVNAFSRY 104 (133)
T ss_dssp CCHHH---HHHHHHHTTCCHHHHHHHHCSCTTHHHHH
T ss_pred CCHHH---HHHHHHHCCCCHHHHHHHCCCCHHHHHHH
T ss_conf 89999---99999984999999998809999999999
No 293
>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP}
Probab=75.20 E-value=2 Score=21.80 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=23.9
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9999997088999889999865890114589
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..|..+...-++|+.++|+.+|+++++++++
T Consensus 14 ~~ik~~R~~~glsq~~la~~~gis~~~i~~~ 44 (82)
T 3clc_A 14 FVIKKIRLEKGMTQEDLAYKSNLDRTYISGI 44 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999982999999987839989799999
No 294
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis}
Probab=75.18 E-value=0.45 Score=26.09 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 88999889999865890114589999
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
+.-.|.+|||+..|+|.+||||.++.
T Consensus 3 ~~~~Ti~DIA~~aGVS~~TVSr~Ln~ 28 (332)
T 2o20_A 3 ESTTTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp --------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 89877999999989699999999689
No 295
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=74.88 E-value=4.1 Score=19.70 Aligned_cols=89 Identities=8% Similarity=0.081 Sum_probs=54.8
Q ss_pred HHHHHHHHHH-HHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHH-HHHHHHHHHHHHH
Q ss_conf 9899999999-7088999889999865890114589999998413212567432230000017888-9999999999999
Q T0617 40 MTEWRIISVL-SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMG-QELYEVASDFAIE 117 (148)
Q Consensus 40 ~~q~~iL~~l-~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G-~~~~~~~~~~~~~ 117 (148)
+.+. +...+ ....|++..+|+...+++...+...+..|...|-|.......+. +.++..- .++...+......
T Consensus 3 p~e~-l~~~l~~~~~gl~~~el~~~~~l~~~~~~~~L~~L~~~g~v~~~~~~~~~----~~i~~~~~~~l~~~l~~~L~~ 77 (135)
T 2v9v_A 3 PEKI-LAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDL----YAISTERYQAWWQAVTRALEE 77 (135)
T ss_dssp HHHH-HHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEETTEE----EEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCE----EEECHHHHHHHHHHHHHHHHH
T ss_conf 8999-99999857689799999989495999999999999748978999517965----898699999999999999999
Q ss_pred HHHH--HHHCCCHHHHHH
Q ss_conf 9999--985799989999
Q T0617 118 REKQ--LLEEFEEAEKDQ 133 (148)
Q Consensus 118 ~~~~--~~~~l~~ee~~~ 133 (148)
+-+. ...+++.+++..
T Consensus 78 ~H~~~P~~~G~~k~eL~~ 95 (135)
T 2v9v_A 78 FHSRYPLRPGLAREELRS 95 (135)
T ss_dssp HHHHCTTSSCEEHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHH
T ss_conf 998696121989999998
No 296
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3}
Probab=74.52 E-value=1.7 Score=22.28 Aligned_cols=30 Identities=7% Similarity=0.108 Sum_probs=22.4
Q ss_pred HHHHHHHCCCCCHHHHHHHHC--CCCCHHHHH
Q ss_conf 999997088999889999865--890114589
Q T0617 45 IISVLSSASDCSVQKISDILG--LDKAAVSRT 74 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~--i~~~~vs~~ 74 (148)
-|..+...-++|+.++|+.+| ++++++++.
T Consensus 12 rlr~~R~~~gltq~~lA~~~g~~is~~~is~~ 43 (71)
T 2ewt_A 12 KLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSY 43 (71)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 99999998499699999998897289999999
No 297
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A
Probab=74.40 E-value=1.8 Score=22.07 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=8.6
Q ss_pred HHHHHHHHCCCCCHH
Q ss_conf 889999865890114
Q T0617 57 VQKISDILGLDKAAV 71 (148)
Q Consensus 57 ~~eLa~~l~i~~~~v 71 (148)
...||+.++++.+..
T Consensus 56 L~~IA~aL~V~l~~L 70 (198)
T 2bnm_A 56 LGRIAHVLGTSIGAL 70 (198)
T ss_dssp HHHHHHHTTSCTGGG
T ss_pred HHHHHHHHCCCHHHH
T ss_conf 999999979889998
No 298
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=74.36 E-value=1.8 Score=22.06 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=24.7
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999970889998899998658901145899
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
.|..+...-++|+.++|+.+|+++++++++-
T Consensus 14 ~ir~~R~~~gltq~~lA~~lgvs~~~is~~E 44 (84)
T 2ef8_A 14 LLTKLRKEASLSQSELAIFLGLSQSDISKIE 44 (84)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999959999999998726999999998
No 299
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=74.21 E-value=0.49 Score=25.83 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=20.5
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99889999865890114589999
Q T0617 55 CSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
.|.+|||+..|+|++||||.++.
T Consensus 5 vTikdIA~~aGVS~sTVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 45999999989599999999589
No 300
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=73.56 E-value=4.4 Score=19.48 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=46.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHH-----HHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 999998728999899999999-----7088999889999865890114589999998413212
Q T0617 29 STAYTQKFGIGMTEWRIISVL-----SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 29 ~~~~~~~~glt~~q~~iL~~l-----~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
...+.....|.+..|..+-.+ ...++.+.++--....++..-++++.+-|++.|||.+
T Consensus 27 E~~LC~~lrL~P~~YL~~K~~l~~E~~~~g~l~k~da~~~~kiD~~K~~rIydfl~~~Gwi~~ 89 (90)
T 2aqe_A 27 EKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREGYITK 89 (90)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCCHHHHHTTSSSSSHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 999999929995999999999999999859986999998845565889999999998668337
No 301
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=73.29 E-value=1.9 Score=21.97 Aligned_cols=31 Identities=3% Similarity=0.103 Sum_probs=25.1
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999708899988999986589011458999
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
|..+...-++|+.++|+.+|++++++++..+
T Consensus 6 lk~~r~~~~lsq~ela~~~gvs~~ti~~~e~ 36 (69)
T 1r69_A 6 VKSKRIQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC
T ss_conf 9999999499999997850989999999987
No 302
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=73.22 E-value=3.2 Score=20.41 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=40.8
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99970889998899998658901145899999984132125674322
Q T0617 47 SVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 47 ~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
-.|.-+|.....+|+..++.+.|-|-.++.+|+..|=|+|.....++
T Consensus 9 D~iAL~G~~da~qLS~~L~~P~plv~AMLerL~~MGKierie~d~~g 55 (78)
T 1xn7_A 9 DLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDG 55 (78)
T ss_dssp HHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECCCCCC
T ss_pred HHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCC
T ss_conf 99997163109999988769878999999999970343451235565
No 303
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens}
Probab=73.15 E-value=2.5 Score=21.13 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999970889998899998658901-1458999999841321256
Q T0617 41 TEWRIISVLSSASDCSVQKISDILGLDKA-AVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 41 ~q~~iL~~l~~~~~~t~~eLa~~l~i~~~-~vs~~i~~L~~~gli~r~~ 88 (148)
.+=.|+.+|...||.+.=.||+.+|+++. -|...+-.|++++++....
T Consensus 11 ~kEkI~~fL~~~gp~~AL~IAKnlGl~tAkdVN~~Ly~lekqhll~~d~ 59 (72)
T 3eyi_A 11 REEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDE 59 (72)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 6999999999669925889999858111777568999999742777668
No 304
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=72.91 E-value=2.1 Score=21.63 Aligned_cols=15 Identities=27% Similarity=0.140 Sum_probs=7.7
Q ss_pred HHHHHHHHCCCCCHH
Q ss_conf 889999865890114
Q T0617 57 VQKISDILGLDKAAV 71 (148)
Q Consensus 57 ~~eLa~~l~i~~~~v 71 (148)
...||+.++++.+..
T Consensus 56 l~~ia~~l~v~~~~l 70 (192)
T 1y9q_A 56 LWKIASGLEASFSAF 70 (192)
T ss_dssp HHHHHHHHTCCSGGG
T ss_pred HHHHHHHHCCCHHHH
T ss_conf 999987755088987
No 305
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=72.88 E-value=2.1 Score=21.68 Aligned_cols=30 Identities=10% Similarity=0.085 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 999997088999889999865890114589
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
=+..+...-++|+.++|+.+|++++++++.
T Consensus 34 ~ir~lR~~~gltQ~~lA~~lgvs~~ti~~~ 63 (99)
T 2ppx_A 34 RIKIIRRALKLTQEEFSARYHIPLGTLRDW 63 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999995999999998939989999999
No 306
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H 1ku2_A
Probab=72.60 E-value=2.3 Score=21.32 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=38.7
Q ss_pred CCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------H-H-CCCCCHHHHHHHHCCCCCH
Q ss_conf 321156776---49999999999999999999998728999899999999-------7-0-8899988999986589011
Q T0617 3 AMQKINIDR---HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVL-------S-S-ASDCSVQKISDILGLDKAA 70 (148)
Q Consensus 3 am~~l~le~---~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l-------~-~-~~~~t~~eLa~~l~i~~~~ 70 (148)
|.++++.+. |.+|...|+-..+.+.+.+. .+..-++......+..+ . . ..+.|..+||..++++...
T Consensus 223 AvekFDp~kG~rFSTYA~wwIr~~I~r~i~~~-~r~iriP~~~~~~~~k~~~~~~~l~~~~gr~pt~eeiA~~l~~~~~~ 301 (423)
T 2a6h_F 223 AVEKFEYKRRFKFSTYATWWIRQAINRAIADQ-ARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDA 301 (423)
T ss_dssp HHHHCCTTSCCCHHHHHHHHHHHHHHHHHHHH-SSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCH
T ss_pred HHHHHCCCCCCCEEEECHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHH
T ss_conf 99971855799714300298899999999981-78311319999997789999999999848998478999884354129
Q ss_pred HHHH
Q ss_conf 4589
Q T0617 71 VSRT 74 (148)
Q Consensus 71 vs~~ 74 (148)
+...
T Consensus 302 ~~~~ 305 (423)
T 2a6h_F 302 KRVE 305 (423)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 307
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=72.56 E-value=4.7 Score=19.33 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=24.4
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 999997088999889999865890114589999998413212
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
+...+...+..+..+++..++++.++|.+.+++ .|+..+
T Consensus 77 ~~~~v~~~~~~s~~~i~~~l~iS~~Tv~r~L~~---~g~~~k 115 (345)
T 3hot_A 77 LQALLDEDDAQTQKQLAEQLEVSQQAVSNRLRE---MGKIQK 115 (345)
T ss_dssp HHHHHHHCSCCCHHHHHHHTTSCHHHHHHHHHH---TTCEEE
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH---CCCCEE
T ss_conf 988876075434999998839899999999998---388020
No 308
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=72.36 E-value=4.7 Score=19.30 Aligned_cols=66 Identities=14% Similarity=0.260 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 2899989999999970---88999889999865890114589999-9984132125674322300000178889999
Q T0617 36 FGIGMTEWRIISVLSS---ASDCSVQKISDILGLDKAAVSRTVKK-LEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~---~~~~t~~eLa~~l~i~~~~vs~~i~~-L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
.|+...++.++..+.+ .++.....||..++.++.++-..+.. |.+.|||.|.+. ||. +|++|.+.+
T Consensus 255 ~g~~~~d~~~isaliks~rGs~vgL~~La~~lged~~tie~~~Epyl~~~g~i~rt~~---GR~----~t~~a~~~l 324 (334)
T 1in4_A 255 EGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR---GRI----VTEKAYKHL 324 (334)
T ss_dssp TCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETT---EEE----ECHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHCCH---HHH----HHHHHHHHH
T ss_conf 6896778999999999848986259999998189712178888789987244642952---788----789999991
No 309
>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=72.28 E-value=0.59 Score=25.34 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.9
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99889999865890114589999
Q T0617 55 CSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
.|.+|||+..|+|.+||||.++.
T Consensus 4 ~Ti~DIA~~aGVS~~TVSr~Ln~ 26 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 88999999989889999999689
No 310
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, structural genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=72.18 E-value=2.4 Score=21.26 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999970889998899998658901145899
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
.|..+...-++|+.++|+.+|+++++++++-
T Consensus 72 ~l~~lR~~~glTq~elA~~~gvs~~~is~iE 102 (141)
T 3kxa_A 72 TFVSLRMKKGFTQSELATAAGLPQPYLSRIE 102 (141)
T ss_dssp CHHHHHHHTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999829989999999897999999998
No 311
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=72.15 E-value=0.59 Score=25.31 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 88999889999865890114589999
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
..-.|.+|||+..|+|.+||||.++.
T Consensus 6 k~r~Ti~dIA~~aGVS~~TVSr~Ln~ 31 (348)
T 3bil_A 6 KFRPTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp --------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 99973999999988599999999789
No 312
>2jtv_A Protein of unknown function; protein with unknown function RPA3401, northeast structural genomics consortium, NESG, PSI-2; NMR {Rhodopseudomonas palustris CGA009}
Probab=71.36 E-value=3.6 Score=20.10 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 9989999999970889998899998658901145899999984132125674322300000178889999
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
++.+|.++..|...||-.+ +-.+.-.+--+.|+..||+.+. |.|.+..++.+|+.|+...
T Consensus 3 ~~dDFrLIReI~~aGGrkq--------Vf~~req~~yedLV~LGWLKrs--~~dsk~a~YQiTeRG~sAA 62 (65)
T 2jtv_A 3 TADDFKLIRDIHSTGGRRQ--------VFGSREQKPFEDLVDLGWLKRS--SVDSRATHYQITERGTSAA 62 (65)
T ss_dssp CHHHHHHHHHHHHTTSEEE--------ECCHHHHHHHHHHHHHTSEEEE--EECSSCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCE--------ECCCCCCCCHHHHHHHHHHHCC--CCCCHHHHHHHCCCCHHHH
T ss_conf 4688899999995278512--------1172003516788986111137--6321000321100321444
No 313
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=71.15 E-value=0.64 Score=25.06 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999889999865890114589999
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
..|.+|||+..|+|++||||.++.
T Consensus 3 k~Ti~dIA~~aGVS~~TVSraLn~ 26 (349)
T 1jye_A 3 PVTLYDVAEYAGVSYQTVSRVVNQ 26 (349)
T ss_dssp ------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 778999999988599999999679
No 314
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=71.04 E-value=1.9 Score=21.94 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=18.4
Q ss_pred HCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 088999889999865890114589
Q T0617 51 SASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 51 ~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..-|+|+.++|+.+|++++++++.
T Consensus 22 ~~~gltq~elA~~lg~s~~~is~~ 45 (80)
T 3kz3_A 22 NELGLSYESVADKMGMGQSAVAAL 45 (80)
T ss_dssp HHHTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 995998999998788049799998
No 315
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=71.02 E-value=1.9 Score=21.95 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=23.7
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999970889998899998658901145899
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
-|..+...-++|+.++|+.+|+++++++++.
T Consensus 9 ~ik~~R~~~glsq~ela~~~gi~~~~i~~~E 39 (68)
T 2r1j_L 9 RIRARRKKLKIRQAALGKMVGVSNVAISQWE 39 (68)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999929999999989796999999998
No 316
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=70.63 E-value=0.67 Score=24.94 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 8899988999986589011458999
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
.+-.|.+|||+..|+|.+||||.++
T Consensus 4 ~~k~Ti~dIA~~aGVS~~TVSrvLn 28 (333)
T 3jvd_A 4 SAKSSLKEVAELAGVGYATASRALS 28 (333)
T ss_dssp -------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9998599999998979999999978
No 317
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=70.50 E-value=2.6 Score=21.07 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 89998999999997088999889999865890114589
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
.+|..++.-+ .+.-|+|+.++|+.+|++++++++.
T Consensus 89 ~~~~e~~~~~---R~r~GltQ~~lA~~lGvs~~ti~~~ 123 (170)
T 2auw_A 89 EVSHEMFGDW---MHRNNLSLTTAAEALGISRRMVSYY 123 (170)
T ss_dssp CCCHHHHHHH---HHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHH---HHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 7889999999---9985999999999949999999999
No 318
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=70.09 E-value=2 Score=21.74 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=21.4
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 999997088999889999865890114589
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
.|..+...-++|+.+||+.+|+++++++++
T Consensus 18 ~lk~~R~~~gltq~~lA~~~gis~~~i~~i 47 (83)
T 3f6w_A 18 LLLEARSAAGITQKELAARLGRPQSFVSKT 47 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999982999999998853899999999
No 319
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=69.95 E-value=2.1 Score=21.69 Aligned_cols=31 Identities=3% Similarity=0.147 Sum_probs=24.5
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999970889998899998658901145899
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
.|..+...-++|+.+||+.+|+++++++++.
T Consensus 32 ~Lr~~R~~~glsq~~lA~~~gis~~~is~~E 62 (117)
T 3f52_A 32 ALRSFRADKGVTLRELAEASRVSPGYLSELE 62 (117)
T ss_dssp HHHHHHHHHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999959899999988603077899997
No 320
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13
Probab=69.80 E-value=1.8 Score=22.09 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=22.3
Q ss_pred HHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 70889998899998658901145899
Q T0617 50 SSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 50 ~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
-+.-++|+.+.|+.+|+++|.+|++.
T Consensus 49 I~~~~ltQ~eAA~~lGi~QprvS~L~ 74 (120)
T 2o38_A 49 IDRARLSQAAAAARLGINQPKVSALR 74 (120)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99869857667666288878876998
No 321
>1fp2_A Isoflavone O-methytransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=69.79 E-value=5.4 Score=18.93 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=42.5
Q ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHH
Q ss_conf 89999999970-88999889999865890114---589999998413212567432230000017888999
Q T0617 41 TEWRIISVLSS-ASDCSVQKISDILGLDKAAV---SRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQEL 107 (148)
Q Consensus 41 ~q~~iL~~l~~-~~~~t~~eLa~~l~i~~~~v---s~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~ 107 (148)
-++.|.-.|.+ .+|+|..|||+.++++...+ .|++..|...|+.+......+ .+.+|+.+.-+
T Consensus 37 vel~i~d~L~~~~~p~s~~eLa~~~~~~~~~~~~l~RlL~~l~~~g~~~~~~~~~~----~~~~t~~s~~L 103 (352)
T 1fp2_A 37 VEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEE----SYALTVASELL 103 (352)
T ss_dssp HHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSE----EEEECHHHHTT
T ss_pred HHCCCHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEECCCC----EEECCHHHHHH
T ss_conf 98797577852799978999998869395677999999999987682688855896----47536777861
No 322
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=69.74 E-value=1.3 Score=22.95 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=43.6
Q ss_pred HHHHHHHHHHCC----CCCHHHHHHHHCCCCCH------HHHHHHHHHHHHHHHCCCCC-CCC-CEECCCCCHHHHHH
Q ss_conf 999999997088----99988999986589011------45899999984132125674-322-30000017888999
Q T0617 42 EWRIISVLSSAS----DCSVQKISDILGLDKAA------VSRTVKKLEEKKYIEVNGHS-EDK-RTYAINLTEMGQEL 107 (148)
Q Consensus 42 q~~iL~~l~~~~----~~t~~eLa~~l~i~~~~------vs~~i~~L~~~gli~r~~~~-~D~-R~~~l~LT~~G~~~ 107 (148)
+..+.-.|.+.| ++|..|||.+++.+++. +.|+++-|...|+++..... .+. -...+.+|+.++.+
T Consensus 46 eLglfd~La~~~~~~~~~t~~eLA~~~g~~~~~~~~p~~L~RlLr~L~s~gl~~e~~~~~~~~~~~~~y~~t~~s~~l 123 (372)
T 1fp1_D 46 DLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYL 123 (372)
T ss_dssp HTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGG
T ss_pred HCCCHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEECCCHHHHHH
T ss_conf 878189998579988885999999865999666754689999999999689617734555578755135689989986
No 323
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=69.50 E-value=5.4 Score=18.89 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999899999999708899988999986589011458999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
|+..+..++. +....|.+..+||+.+|++.++|...+.+..
T Consensus 141 L~~~~r~v~~-l~~~~g~~~~eIA~~lg~s~~tV~~~l~ra~ 181 (194)
T 1or7_A 141 LPEDLRMAIT-LRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 181 (194)
T ss_dssp SCHHHHHHHH-HHHTTCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999999-9998097999999998949999999999999
No 324
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=69.48 E-value=2 Score=21.79 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=51.8
Q ss_pred CCCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 28999899---999999708899988999986589011----45899999984132125674322300000178889999
Q T0617 36 FGIGMTEW---RIISVLSSASDCSVQKISDILGLDKAA----VSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 36 ~glt~~q~---~iL~~l~~~~~~t~~eLa~~l~i~~~~----vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
+.++..+. .++.-|.-..++....+....+++... .-..++.|++.|||+...+ .+.+|++|+-++
T Consensus 361 ~~ls~~d~~r~~vi~~L~~~~~ld~~~~~~~fg~~~~~~f~~~~~~L~~l~~~GLl~~~~~-------~i~lT~~Gr~~~ 433 (457)
T 1olt_A 361 IALTRDDCIRRDVIKSLICNFRLDYSPIEQQWDLLFADYFAEDLKLLAPLAKDGLVDVDEK-------GIQVTAKGRLLI 433 (457)
T ss_dssp EECCHHHHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHTHHHHHHHHHHHHTTSEEECSS-------EEEECTTTGGGH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECC-------EEEECHHHHHHH
T ss_conf 3687778999999998998299287999999797888987999999999997898999899-------999998589999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q T0617 109 EVASDFA 115 (148)
Q Consensus 109 ~~~~~~~ 115 (148)
..+...+
T Consensus 434 ~~Ia~~F 440 (457)
T 1olt_A 434 RNICMCF 440 (457)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
T ss_conf 9999999
No 325
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=69.41 E-value=2 Score=21.81 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=22.3
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 999970889998899998658901145899
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
|..+...-++|+.++|+.+|++++++++..
T Consensus 10 ik~lR~~~gltq~~lA~~~gis~~~i~~~e 39 (76)
T 1adr_A 10 IRARRKKLKIRQAALGKMVGVSNVAISQWE 39 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999919999999999894999999999
No 326
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=69.28 E-value=5.5 Score=18.86 Aligned_cols=75 Identities=8% Similarity=0.057 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-----HHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 115677649999999999999999999998728999899999999-----708899988999986589011458999999
Q T0617 5 QKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVL-----SSASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 5 ~~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l-----~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
..+++.++.++.+. ......+.....|.+..|..+..+ ...++.+.++--..+.++..-+.++.+-|+
T Consensus 28 ~pldi~~~Pg~~lL-------s~~E~~LC~~lrL~P~~YL~~K~~ll~E~~k~g~l~k~da~~l~kiD~~K~~rIydfl~ 100 (108)
T 2cuj_A 28 PPLNLTGLPGTEKL-------NEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLI 100 (108)
T ss_dssp CCCCCTTSTTTTTS-------CHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCC-------CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 98675689881117-------99999999993899399999999999999976998699999987457276899999999
Q ss_pred HHHHHHC
Q ss_conf 8413212
Q T0617 80 EKKYIEV 86 (148)
Q Consensus 80 ~~gli~r 86 (148)
+.|||.+
T Consensus 101 ~~GwI~~ 107 (108)
T 2cuj_A 101 REGYITK 107 (108)
T ss_dssp TTTSSCC
T ss_pred HCCCCCC
T ss_conf 8678316
No 327
>2jvl_A TRMBF1; coactivator, helix-turn-helix, protein binding, transcription; NMR {Trichoderma reesei}
Probab=69.23 E-value=2.3 Score=21.43 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=23.0
Q ss_pred HHHHHHH--CCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999970--889998899998658901145899
Q T0617 45 IISVLSS--ASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 45 iL~~l~~--~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
.+..... .-++|+.+||+.++++++++|++-
T Consensus 38 ~i~~~R~~~~kglTQ~eLA~~~gvs~~~is~~E 70 (107)
T 2jvl_A 38 AIEQGRQKFEPTMTQAELGKEIGETAATVASYE 70 (107)
T ss_dssp HHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999998869989999999898899999998
No 328
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=69.05 E-value=5.5 Score=18.83 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=33.0
Q ss_pred CCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 289998999-99999708899988999986589011458999999
Q T0617 36 FGIGMTEWR-IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 36 ~glt~~q~~-iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
-+|++.+-. .+..+... +.++.+||+.+|.+++.|++.+.-+.
T Consensus 34 ~~l~p~e~A~~~~~l~~~-g~t~~eiA~~lg~s~s~v~~~l~l~~ 77 (178)
T 1r71_A 34 NELTPREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLLD 77 (178)
T ss_dssp TCCCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHGGGS
T ss_pred CCCCHHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 689999999999999983-89899999998889999999999806
No 329
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=69.02 E-value=5.6 Score=18.83 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=49.6
Q ss_pred CCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC--CCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 89998-999999997088999889999865890114589999998413212567--432230000017888999999999
Q T0617 37 GIGMT-EWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH--SEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 37 glt~~-q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~--~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
.||.. ...++..+.++|.+.-.+||+++++.++++|.+++.-.+-=--++... ...+....+.. ++++..
T Consensus 7 qltfreksriiqeveenpdlrkgeiarrfnippstlstilknkrailaserkygvastcrktnklsp-------ydkleg 79 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNKLSP-------YDKLEG 79 (131)
T ss_dssp CCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHHHHHHHGGGGGTCCCCCCCT-------THHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-------HHHHHH
T ss_conf 0127877489999873975110067775089848899999604888766545406766540367892-------478889
Q ss_pred HHHHHHHHHH-HCCCH
Q ss_conf 9999999998-57999
Q T0617 114 FAIEREKQLL-EEFEE 128 (148)
Q Consensus 114 ~~~~~~~~~~-~~l~~ 128 (148)
....|.+++- .++.-
T Consensus 80 lliawfqqiraaglpv 95 (131)
T 1hlv_A 80 LLIAWFQQIRAAGLPV 95 (131)
T ss_dssp HHHHHHHHHGGGTCCC
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999998848973
No 330
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=68.79 E-value=5.4 Score=18.91 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 8999889999865890114589
Q T0617 53 SDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 53 ~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
.+.++.++|+..|++++++|++
T Consensus 26 ~~~s~~elA~~~Gvs~~~is~i 47 (86)
T 2ofy_A 26 GDMSMVTVAFDAGISVETLRKI 47 (86)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCHHHHHHHHCCCHHHHHHH
T ss_conf 8599999999989599999999
No 331
>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf}
Probab=67.63 E-value=0.85 Score=24.27 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.2
Q ss_pred CHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9889999865890114589999
Q T0617 56 SVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 56 t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
|.+|||+..|+|++||||.++.
T Consensus 4 ti~diA~~agVS~~TVsraLn~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 8999999989499999999689
No 332
>1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2
Probab=67.57 E-value=5.6 Score=18.81 Aligned_cols=45 Identities=11% Similarity=0.258 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHH-H--CCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 89998999999997-0--889998899998658901145899999984
Q T0617 37 GIGMTEWRIISVLS-S--ASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~-~--~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
.|++.+-.|+..-. . ..++|..+||+.+|+|+..|..+-.+-.++
T Consensus 18 ~L~~rEr~Ii~~ryGl~~~~~~tl~ei~~~lgvSrerVRQie~~Al~k 65 (81)
T 1tlh_B 18 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRK 65 (81)
T ss_dssp TCCHHHHHHHHHHTCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 499999999999817898875669999999897899999999999999
No 333
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=67.25 E-value=0.87 Score=24.19 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 889998899998658901145899999
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L 78 (148)
..+.+..+||..++++...+.......
T Consensus 128 gr~pt~~eiA~~l~v~~e~v~~~~~~~ 154 (243)
T 1l0o_C 128 GRAPTVTEIADHLGISPEDVVLAQEAV 154 (243)
T ss_dssp TSCCBHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 899846788888299999999999987
No 334
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=67.08 E-value=6.1 Score=18.57 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=34.1
Q ss_pred CCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-------HH-H-CCCCCHHHHHHHHCCCCCH
Q ss_conf 321156776---4999999999999999999999872899989999999-------97-0-8899988999986589011
Q T0617 3 AMQKINIDR---HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISV-------LS-S-ASDCSVQKISDILGLDKAA 70 (148)
Q Consensus 3 am~~l~le~---~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~-------l~-~-~~~~t~~eLa~~l~i~~~~ 70 (148)
|.++++.+. |.+|...|+-..+.+.+.+. .+..-++......+.. +. . ..+.+..+||..++++...
T Consensus 238 AvekFDp~rG~rFSTYA~wwIRq~I~r~i~~~-~r~iRiP~~~~~~~~k~~~~~~~l~~~lgr~pt~eeiA~~l~~~~~~ 316 (438)
T 1l9z_H 238 AVEKFEYKRRFKFSTYATWWIRQAINRAIADQ-ARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDA 316 (438)
T ss_pred HHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHH
T ss_conf 99972744698720011077768999999982-68775670599999999999999999838994266899994774378
Q ss_pred HH
Q ss_conf 45
Q T0617 71 VS 72 (148)
Q Consensus 71 vs 72 (148)
..
T Consensus 317 ~~ 318 (438)
T 1l9z_H 317 KR 318 (438)
T ss_pred HH
T ss_conf 88
No 335
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=66.42 E-value=6.2 Score=18.49 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 899988999986589011458999999
Q T0617 53 SDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 53 ~~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
+++++.+||+.+++++++.++..++-.
T Consensus 19 ~~~sl~~lA~~~~~s~~~l~r~f~~~~ 45 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 997999999998929999999999998
No 336
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4}
Probab=65.20 E-value=1 Score=23.76 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=11.9
Q ss_pred HCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 0889998899998658901145899
Q T0617 51 SASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 51 ~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
..-|+|+.+||+.+|++++++|+.-
T Consensus 11 ~~~glsq~elA~~~gis~~tis~~E 35 (158)
T 2p5t_A 11 KTHDLTQLEFARIVGISRNSLSRYE 35 (158)
T ss_dssp -------------------------
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9839999999999797999999998
No 337
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=62.65 E-value=1.2 Score=23.26 Aligned_cols=55 Identities=9% Similarity=0.242 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHC---CCCCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999899999999708---899988999986-5890114589999998413212567432
Q T0617 38 IGMTEWRIISVLSSA---SDCSVQKISDIL-GLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 38 lt~~q~~iL~~l~~~---~~~t~~eLa~~l-~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
++..+-.||.+|... .|++..+|+..+ +++...+...++.|...|+|-...|...
T Consensus 205 ~~~~~~~Vl~~i~~~~~~~Gv~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd~h 263 (270)
T 2pi2_A 205 LTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDH 263 (270)
T ss_dssp -----------------------------------------------------------
T ss_pred CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCEEECCCCCCE
T ss_conf 77899999998743687688389999998429999999999999975988971257671
No 338
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=62.20 E-value=6.1 Score=18.58 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=25.5
Q ss_pred HHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 7088999889999865890114589999998
Q T0617 50 SSASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 50 ~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
....++++.+||+.+|+|++.+.|+.++--.
T Consensus 89 ~~~~~~sl~~lA~~~g~S~~~l~R~Fk~~~G 119 (133)
T 1u8b_A 89 EQETPVTLEALADQVAMSPFHLHRLFKATTG 119 (133)
T ss_dssp CSSSCCCHHHHHHHHTSCHHHHHHHHHHHTS
T ss_pred HCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 2369999999954719998999999999989
No 339
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=62.03 E-value=7.5 Score=17.96 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 2899989999999970889998899998658901145899999984
Q T0617 36 FGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
..||..+..++..+.+ |.+.++||..++++..||...+.++-++
T Consensus 141 ~~Lt~re~evl~ll~~--g~sn~eIa~~L~is~~TV~~h~~~i~~K 184 (208)
T 1yio_A 141 SSLTGREQQVLQLTIR--GLMNKQIAGELGIAEVTVKVHRHNIMQK 184 (208)
T ss_dssp HTSCHHHHHHHHHHTT--TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 0123689999999981--6629999998188689999999999998
No 340
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=61.31 E-value=6.4 Score=18.43 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=17.2
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9997088999889999865890114589
Q T0617 47 SVLSSASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 47 ~~l~~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..+..+|..|+.+||+..|++++++.+.
T Consensus 25 ~l~~~~G~~T~~~IA~~agvs~~tlY~~ 52 (190)
T 2v57_A 25 LVLADHPTAALGDIAAAAGVGRSTVHRY 52 (190)
T ss_dssp HHHTTCTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9998869962999999969199999777
No 341
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=60.81 E-value=5 Score=19.14 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 8999889999865890114589999
Q T0617 53 SDCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 53 ~~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
.|.+.++||+.++++++|+.|+++.
T Consensus 157 ~g~s~~~Iak~l~~s~stv~r~l~~ 181 (183)
T 1gdt_A 157 QGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 7999999999989299999999970
No 342
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=60.29 E-value=6.3 Score=18.48 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=43.1
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999970889998899998658901145899999984132125674322
Q T0617 42 EWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 42 q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
+-.++.+.....-++...||..++++...+-..+.+|+..|-+.-+.|..++
T Consensus 18 Ehni~~is~~Y~~Isl~~la~~l~l~~~~vE~~l~~mI~~~~l~akIDq~~g 69 (84)
T 1ufm_A 18 EHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDG 69 (84)
T ss_dssp HHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTT
T ss_pred HHHHHHHHHHCCEEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9999999985044559999999597999999999999867938999918999
No 343
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=59.86 E-value=3.8 Score=19.96 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=39.5
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9997088999889999865890114589999998413212567432
Q T0617 47 SVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 47 ~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
-.|.-+|..-..+|+..+..+.|-|-.++.+|+..|=|+|.....+
T Consensus 9 D~iAL~G~~da~qLS~~L~~PlPlv~AMLerL~aMGKierie~~~s 54 (87)
T 2k02_A 9 DMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRISETSE 54 (87)
T ss_dssp HHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 9999707400999998867987899999999987357676034557
No 344
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=59.53 E-value=4.3 Score=19.58 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 88999889999865890114589999
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
..|.+..+||+.++++++|+.|+++.
T Consensus 173 ~~G~s~~~IA~~l~is~~Tv~Ril~~ 198 (209)
T 2r0q_C 173 EEGQAISKIAKEVNITRQTVYRIKHD 198 (209)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 87699999999989699999999997
No 345
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=58.97 E-value=4.6 Score=19.36 Aligned_cols=39 Identities=5% Similarity=0.177 Sum_probs=28.0
Q ss_pred CCCHHHHH--HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 89998999--9999970889998899998658901145899
Q T0617 37 GIGMTEWR--IISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 37 glt~~q~~--iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
.+|..+.. .+..+.++|+.|+.+||+..|++++++-+-.
T Consensus 10 ~~tR~~Il~AA~~lf~e~G~~t~~~IA~~aGvs~~tlY~yF 50 (213)
T 2g7g_A 10 RLDRERIAEAALELVDRDGDFRMPDLARHLNVQVSSIYHHA 50 (213)
T ss_dssp -CCHHHHHHHHHHHHHHHSSCCHHHHHHHTTSCHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHC
T ss_conf 01299999999999998298629999999686821699988
No 346
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=57.69 E-value=8.9 Score=17.47 Aligned_cols=42 Identities=5% Similarity=0.020 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHH------HCCCCCHHHHHHHHCC-CCCHHHHHHHH
Q ss_conf 289998999999997------0889998899998658-90114589999
Q T0617 36 FGIGMTEWRIISVLS------SASDCSVQKISDILGL-DKAAVSRTVKK 77 (148)
Q Consensus 36 ~glt~~q~~iL~~l~------~~~~~t~~eLa~~l~i-~~~~vs~~i~~ 77 (148)
+|+++.+|.--..+. ..++.++.+||..+|. +.+..++..++
T Consensus 47 ~g~s~~~~i~~~Rl~~A~~lL~~~~~~i~~IA~~~Gf~~~s~F~~~Fk~ 95 (120)
T 3mkl_A 47 EETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRN 95 (120)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 1999999999999999998703677879999999589988999999999
No 347
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1}
Probab=57.67 E-value=5.4 Score=18.93 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=20.8
Q ss_pred HHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9708899988999986589011458999
Q T0617 49 LSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 49 l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
|..-| +++.||+.+|+++++|+..+.
T Consensus 8 I~~~G--~q~~LAr~lGvsq~~Vs~W~~ 33 (79)
T 3bd1_A 8 INKLG--SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp HHHHS--SHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHC--CHHHHHHHHCCCHHHHHHHHC
T ss_conf 99968--999999991998999999881
No 348
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=56.75 E-value=9.2 Score=17.37 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9999997088999889999865890114589999
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
.|...|..+++ ++++-|+.+||++.|+-+.+++
T Consensus 45 ~I~~aL~~~~G-N~s~AAr~LGIsR~TLyrklkk 77 (81)
T 1umq_A 45 HIQRIYEMCDR-NVSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp HHHHHHHHTTS-CHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999983-0999999969899999999997
No 349
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=56.63 E-value=9.2 Score=17.36 Aligned_cols=89 Identities=16% Similarity=0.233 Sum_probs=51.0
Q ss_pred HHHHHHHCCCCCHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCC-----CCHHHHHHHH-HHH--H
Q ss_conf 99999708899988999986---58901145899999984132125674322300000-----1788899999-999--9
Q T0617 45 IISVLSSASDCSVQKISDIL---GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAIN-----LTEMGQELYE-VAS--D 113 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l---~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~-----LT~~G~~~~~-~~~--~ 113 (148)
+|..|+..+ .|..||...| ++++..+..+|.+|.+.|||- |.|...-+ -...|...+. .+. .
T Consensus 23 Al~~Ls~r~-~S~~EL~~kL~~k~~~~~~i~~vI~~l~~~gyid------D~rya~~~v~~~~~~g~G~~~I~~~L~~kG 95 (162)
T 3dfg_A 23 ALGLLVHRE-HSKKELNRKLQARGIEPEAAQAAVERLAGEGWQD------DVRFAASVVRNRASSGYGPLHIRAELGTHG 95 (162)
T ss_dssp HHHHHHHSC-CCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCC------HHHHHHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred HHHHHHCCH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 999851331-6899999999866999999999999999939998------899999999972005886899999999871
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999857999899999999999
Q T0617 114 FAIEREKQLLEEFEEAEKDQLFILLKK 140 (148)
Q Consensus 114 ~~~~~~~~~~~~l~~ee~~~l~~~L~~ 140 (148)
+.....+..++.+++++......++.+
T Consensus 96 I~~~~I~~al~~~~~de~~~a~~~~~k 122 (162)
T 3dfg_A 96 LDSDAVSAAMATFEGDWTENALDLIRR 122 (162)
T ss_dssp CCHHHHHHHHTTCCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 787899999986575099999999998
No 350
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A
Probab=55.95 E-value=4.1 Score=19.69 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=14.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999999985799989999999
Q T0617 115 AIEREKQLLEEFEEAEKDQLFI 136 (148)
Q Consensus 115 ~~~~~~~~~~~l~~ee~~~l~~ 136 (148)
........+..|++.+...+.-
T Consensus 125 ~~~~l~~~l~~L~~~~r~vl~l 146 (184)
T 2q1z_A 125 ENARLGRAIARLPEAQRALIER 146 (184)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9999999987189999999999
No 351
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A 1etw_A 4fis_A
Probab=55.41 E-value=9.7 Score=17.23 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=27.1
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999970889998899998658901145899999
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L 78 (148)
.+...|...+| ++++-|+.+|+++.++.+-++++
T Consensus 62 ~i~~aL~~~~g-n~~~AA~~Lgisr~tL~~kl~k~ 95 (98)
T 1eto_A 62 LLDMVMQYTLG-NQTRAALMMGINRGTLRKKLKKY 95 (98)
T ss_dssp HHHHHHHHTTT-CHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999299-89999999798999999999985
No 352
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=55.06 E-value=9.8 Score=17.19 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHH-HHHH-CCCCCHHHHHHHH------CCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 289998999999-9970-8899988999986------5890114589999998413212
Q T0617 36 FGIGMTEWRIIS-VLSS-ASDCSVQKISDIL------GLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 36 ~glt~~q~~iL~-~l~~-~~~~t~~eLa~~l------~i~~~~vs~~i~~L~~~gli~r 86 (148)
..||..|=..|. ...+ ++.+++++|+..+ .+++||||++++.= ..++..
T Consensus 10 ~~lt~~~k~~l~~~~~~~~~~~~Q~~la~wf~~~f~~~Is~STvs~Ilk~k--~~~l~~ 66 (144)
T 1iuf_A 10 RAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK--YSYLDN 66 (144)
T ss_dssp SCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH--HHHTTT
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCH--HHHHHH
T ss_conf 508999999999999865998779999999999988997698999999689--999732
No 353
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1
Probab=55.05 E-value=3.3 Score=20.34 Aligned_cols=50 Identities=12% Similarity=0.267 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH--HHHHCC
Q ss_conf 99989999999970889998899998658901145899999984--132125
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK--KYIEVN 87 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~--gli~r~ 87 (148)
++.-|..||....+.+++|..+|+..++++...+.+.+..|... .++.+.
T Consensus 591 vs~~Q~~ILllfn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~k~ 642 (759)
T 2hye_C 591 VSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKS 642 (759)
T ss_dssp EEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEET
T ss_pred ECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 6499999998516678827999999879099999999999871123435317
No 354
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=54.70 E-value=9.9 Score=17.15 Aligned_cols=30 Identities=10% Similarity=0.351 Sum_probs=22.1
Q ss_pred HHHHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 999997088--999889999865890114589
Q T0617 45 IISVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 45 iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
.+..+.++| +.|+.+||+..|++++++.+.
T Consensus 11 A~~l~~~~G~~~~T~~~IA~~aGvs~~tlY~~ 42 (209)
T 3bqy_A 11 ALDLLNESGLDTLTMRRLAQAMDVQAGALYRY 42 (209)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999974945277999999979298799998
No 355
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=54.44 E-value=5.8 Score=18.69 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHH
Q ss_conf 5890114589999998413212567432230000017888999999
Q T0617 65 GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
Q Consensus 65 ~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~ 110 (148)
+.++..+.++++.|...|||+...+ ..-.+.+|++|.+++..
T Consensus 463 ~~~~~~~~~~~~~l~~~~~l~~~~~----~~~~~~~~~~~~~~l~~ 504 (523)
T 1oyw_A 463 DKSHEHWVSVIRQLIHLGLVTQNIA----QHSALQLTEAARPVLRG 504 (523)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEGG----GTTEEEECGGGHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCEEECC----CCCEEEECHHHHHHHCC
T ss_conf 6999999999999998498366147----78659999779999679
No 356
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=54.32 E-value=10 Score=17.11 Aligned_cols=30 Identities=23% Similarity=0.159 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 889998899998658901145899999984
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
.+++++.+||+.+++++..+++..+.....
T Consensus 17 ~~~l~l~~lA~~~~~s~~~l~r~fk~~~g~ 46 (103)
T 3lsg_A 17 DSQFTLSVLSEKLDLSSGYLSIMFKKNFGI 46 (103)
T ss_dssp CTTCCHHHHHHHTTCCHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 999899999999891999999999998891
No 357
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=53.87 E-value=10 Score=17.07 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=27.6
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999708899988999986589011458999999
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
.|...|..++| ++++-|+.+|++++|+.+-++++-
T Consensus 55 lI~~aL~~~~G-n~~~AA~~LGisR~TL~~Klk~~g 89 (91)
T 1ntc_A 55 LLTTALRHTQG-HKQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHHHHHHHTTT-CTTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 99999999499-499999997989999999999878
No 358
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=53.82 E-value=10 Score=17.06 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999889999865890114589999998413212567
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
|.+..++++.+++++..+..+++.|.+.|.+.+..+
T Consensus 157 pp~~~el~~~l~~~~~~~~~~l~~l~~~g~lv~i~~ 192 (258)
T 1lva_A 157 PPSFKEVAGSFNLDPSELEELLHYLVREGVLVKIND 192 (258)
T ss_dssp CCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 988999998839799999999999997798688279
No 359
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=53.63 E-value=1.4 Score=22.72 Aligned_cols=67 Identities=22% Similarity=0.188 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC----CCCEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899988999986589011458999999841321256743----22300000178889999999999999999
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE----DKRTYAINLTEMGQELYEVASDFAIEREK 120 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~----D~R~~~l~LT~~G~~~~~~~~~~~~~~~~ 120 (148)
..|++|+|||+.+|.|+++||-+-++-- .-|++....- .--......-++|.++++--..+..+..+
T Consensus 3 ~kGltQ~eIA~~LgTSraNVs~IEkrA~--eNIekAr~Tl~~~~~l~Ap~~i~i~~GtDl~~iP~~v~~~aD~ 73 (122)
T 1nr3_A 3 ERGWSQKKIARELKTTRQNVSAIERKAM--ENIEKSRNTLDFVKSLKSPVRILCRRGDTLDEIIKRLLEESNK 73 (122)
T ss_dssp CCSCSSCSTHHHHHHCCSSSCCHHHHHH--TTCSSSSCHHHHHHHHCCCEEEEECCGGGHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 2567799999997765889999999999--9999999999999966898899867999288807999998887
No 360
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=53.44 E-value=8.4 Score=17.64 Aligned_cols=82 Identities=9% Similarity=0.135 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC--CCCCCCEECCCCCHHH--HHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 99988999986589011458999999841321256--7432230000017888--9999999999999999998579998
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG--HSEDKRTYAINLTEMG--QELYEVASDFAIEREKQLLEEFEEA 129 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~--~~~D~R~~~l~LT~~G--~~~~~~~~~~~~~~~~~~~~~l~~e 129 (148)
..|..+||..++++..-|..+++- ....+.-.. +.++.....-.+.+.. ...-.............+++.|++-
T Consensus 477 ~p~~~eia~~~~~~~~~v~~~~~~--~~~~~sl~~~~~~~~~~~~~d~~~d~~~~~~~~~~~~~~l~~~~~~~l~~L~~r 554 (613)
T 3iyd_F 477 EPTPEELAERMLMPEDKIRKVLKI--AKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAR 554 (613)
T ss_dssp CCCTTTTTTTSSCCSSHHHHHHHH--SCCCCCSSCCCSSSSSCCGGGSCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHH
T ss_pred CCCHHHHHHHCCCCHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 997999987349999999999987--289864678078998630888736888898789999999999999998489999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q T0617 130 EKDQLFIL 137 (148)
Q Consensus 130 e~~~l~~~ 137 (148)
|...+.-.
T Consensus 555 e~~vi~~r 562 (613)
T 3iyd_F 555 EAKVLRMR 562 (613)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999998
No 361
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=52.23 E-value=11 Score=16.90 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=22.5
Q ss_pred HHHHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 999997088--999889999865890114589
Q T0617 45 IISVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 45 iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
.+..+..+| ++|+.+||+..|++++++.+.
T Consensus 39 A~~l~~~~G~~~~si~~IA~~aGvS~~tly~~ 70 (222)
T 3bru_A 39 GLEHLTEKGYSSVGVDEILKAARVPKGSFYHY 70 (222)
T ss_dssp HHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999982903077999999959486589799
No 362
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=52.09 E-value=11 Score=16.88 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 9899999999708899988999986-----58901145899999984132125674322300
Q T0617 40 MTEWRIISVLSSASDCSVQKISDIL-----GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTY 96 (148)
Q Consensus 40 ~~q~~iL~~l~~~~~~t~~eLa~~l-----~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~ 96 (148)
..|..+...|..++-.||.||.+.+ .++.+|+||-++.| |++. .++++ ++.+
T Consensus 5 ~R~~~I~~lI~~~~I~tQeeL~~~L~~~Gi~vTQATlSRDlkeL---~~vK-v~~~~-G~~~ 61 (149)
T 1b4a_A 5 QRHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEM---QLVK-VPMAN-GRYK 61 (149)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHT---TCEE-EECSS-SCEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH---CCEE-EECCC-CCEE
T ss_conf 99999999998589788999999999869754189888999994---9988-66599-9789
No 363
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=51.86 E-value=11 Score=16.86 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHH
Q ss_conf 89998999999997088999889999865890114589999998413212567432230000017888999999
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~ 110 (148)
.+...-..+-..+ --+|.++.++|..+|+|++.||.++++.-+ .|..+..-++=. .+.+.|.+.=-..+..
T Consensus 18 ~~~~~ti~iAr~V-LV~Gr~q~~va~~~GlskqaVsq~V~rvw~-~y~~~~lP~g~~-rV~v~lP~~~a~~V~k 88 (101)
T 2w7n_A 18 EVGQQTIEIARGV-LVDGKPQATFATSLGLTRGAVSQAVHRVWA-AFEDKNLPEGYA-RVTAVLPEHQAYIVRK 88 (101)
T ss_dssp CCCHHHHHHHHHH-HTTCCCHHHHHHHHTCCHHHHHHHHHHHHH-HHHHTCCCTTEE-EEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHCCCHHHHHHHHHCCHHHHHHHHHHHHHH-HHHCCCCCCCEE-EEEEECCHHHHHHHHH
T ss_conf 7438999999999-968820999999967309899999999999-987046887706-7888738988999999
No 364
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DNA-binding, phosphoprotein, transcription regulation; NMR {Helicobacter pylori J99}
Probab=51.52 E-value=11 Score=16.82 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=32.1
Q ss_pred HHCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHC-----CCCCHHHHHHHHHHH
Q ss_conf 872899989999999970889--99889999865-----890114589999998
Q T0617 34 QKFGIGMTEWRIISVLSSASD--CSVQKISDILG-----LDKAAVSRTVKKLEE 80 (148)
Q Consensus 34 ~~~glt~~q~~iL~~l~~~~~--~t~~eLa~~l~-----i~~~~vs~~i~~L~~ 80 (148)
+...||+.+|.+|..|..+++ +|-.+|.+.+- .+..++...|.+|-+
T Consensus 38 ~~i~Lt~~E~~lL~~L~~~~g~ivsr~~L~~~vw~~~~~~~~~~l~~~I~rLRk 91 (115)
T 2k4j_A 38 KKLDLTRAEYEILSLLISKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRS 91 (115)
T ss_dssp EEECSCHHHHHHHHHHHHHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 997669999999999986799078099999997067745672359999999999
No 365
>2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP}
Probab=50.70 E-value=11 Score=16.74 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=24.4
Q ss_pred HHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 999997088--99988999986589011458999
Q T0617 45 IISVLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 45 iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
.+..+.++| +.|+.+||+..|++++++.+--+
T Consensus 37 A~~l~~~~G~~~~Ti~~IA~~aGvs~~~lY~~F~ 70 (215)
T 2qko_A 37 AIEVLAREGARGLTFRAVDVEANVPKGTASNYFP 70 (215)
T ss_dssp HHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHHCS
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC
T ss_conf 9999998491407799999986899632786589
No 366
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=50.55 E-value=7 Score=18.15 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=13.1
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 998899998658901145899999984132
Q T0617 55 CSVQKISDILGLDKAAVSRTVKKLEEKKYI 84 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~L~~~gli 84 (148)
.+.+++|+.++++++.+...+.+|+..|+-
T Consensus 44 ~~~~~~a~l~~~~~~~~~~~~~~~~~~g~~ 73 (403)
T 3ez9_A 44 FTRNAVAKLPKLSRRIVDQAIKEMEEDGYQ 73 (403)
T ss_dssp BCHHHHHHSTTCCHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 679999973585577799998766544677
No 367
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A
Probab=50.13 E-value=12 Score=16.68 Aligned_cols=37 Identities=5% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9899999999708899988999986589011458999
Q T0617 40 MTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 40 ~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
...-.+|.....+-|+|..+||+..|++.+.+|++-+
T Consensus 229 ~~~~slLk~~rk~RGLTL~eLAkrTGIS~S~LSqIER 265 (443)
T 3g7d_A 229 VSAGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALR 265 (443)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 2068999999997188899999886989999999985
No 368
>3kz9_A SMCR; transcriptional regulator, quorum sensing, DNA-binding, transcription regulation, transcription regulator; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=49.43 E-value=12 Score=16.61 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=18.0
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9997088--999889999865890114589
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..+.++| +.|+.+||+..|++++++.+.
T Consensus 28 ~l~~~~G~~~~s~~~IA~~agvs~~t~Y~y 57 (206)
T 3kz9_A 28 EVFARRGIGRGGHADIAEIAQVSVATVFNY 57 (206)
T ss_dssp HHHHHSCCSSCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 999971922056999999878691311563
No 369
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=49.42 E-value=12 Score=16.61 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=30.7
Q ss_pred CCCHHHH-HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 8999899-99999970889998899998658901145899999
Q T0617 37 GIGMTEW-RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
Q Consensus 37 glt~~q~-~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L 78 (148)
++|+.+- ..+..+.. .+.++.+||+.+|++++.|++.+.-+
T Consensus 117 ~ltp~e~a~~~~~l~~-~g~~~~~iA~~~G~s~~~V~~~l~L~ 158 (230)
T 1vz0_A 117 DLSPVEEARGYQALLE-MGLTQEEVARRVGKARSTVANALRLL 158 (230)
T ss_dssp TCCHHHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8999999999998999-88729999987599999985677664
No 370
>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A
Probab=49.20 E-value=10 Score=17.05 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHCCCCCHHH
Q ss_conf 9998899998658901145
Q T0617 54 DCSVQKISDILGLDKAAVS 72 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs 72 (148)
+.|+.+||+..|++++++.
T Consensus 27 ~~t~~~Ia~~agvs~~tlY 45 (192)
T 2zcm_A 27 GTTLDDISKSVNIKKASLY 45 (192)
T ss_dssp TCCHHHHHHHTTCCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHH
T ss_conf 0779999998791988998
No 371
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=48.71 E-value=5.6 Score=18.81 Aligned_cols=18 Identities=6% Similarity=0.207 Sum_probs=11.0
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 890114589999998413
Q T0617 66 LDKAAVSRTVKKLEEKKY 83 (148)
Q Consensus 66 i~~~~vs~~i~~L~~~gl 83 (148)
+++..+-+.++.|+..|+
T Consensus 60 vSp~Dl~~A~~~l~~Lg~ 77 (169)
T 1u5t_B 60 ISPMEMREACERFEHLGL 77 (169)
T ss_dssp CCHHHHHHHHTTTGGGTC
T ss_pred CCHHHHHHHHHHHHHCCC
T ss_conf 799999999999997699
No 372
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor A3}
Probab=48.48 E-value=11 Score=16.77 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++.+
T Consensus 27 ~~ti~~Ia~~agvs~~t~Y~ 46 (195)
T 2dg7_A 27 NVTVTDIAERAGLTRRSYFR 46 (195)
T ss_dssp GCCHHHHHHHTTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCCCCHHH
T ss_conf 17799999984869341354
No 373
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=48.37 E-value=12 Score=16.70 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHCCCCCHHH
Q ss_conf 9998899998658901145
Q T0617 54 DCSVQKISDILGLDKAAVS 72 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs 72 (148)
+.|+.+||+..|++++++.
T Consensus 29 ~~si~~IA~~agvS~~tiY 47 (215)
T 1ui5_A 29 STTLSEIVAHAGVTKGALY 47 (215)
T ss_dssp TCCHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHCCCCCCHH
T ss_conf 2889999998688945086
No 374
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=48.16 E-value=11 Score=16.85 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=18.8
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHH
Q ss_conf 9997088--99988999986589011458
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~ 73 (148)
..+.++| +.|+.+||+..|++++++.+
T Consensus 25 ~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 53 (204)
T 2ibd_A 25 TLFAERGLRATTVRDIADAAGILSGSLYH 53 (204)
T ss_dssp HHHHHHCSTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 99997390306799999986899561567
No 375
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=48.04 E-value=13 Score=16.47 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=36.2
Q ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHC-----CCCCHHHHHHHHHHHH
Q ss_conf 72899989999999970889--99889999865-----8901145899999984
Q T0617 35 KFGIGMTEWRIISVLSSASD--CSVQKISDILG-----LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~--~t~~eLa~~l~-----i~~~~vs~~i~~L~~~ 81 (148)
...||+.+|.+|.++..+++ ++-.+|.+.+- .+..++...|.+|-++
T Consensus 26 ~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkk 79 (112)
T 2jzy_A 26 KIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSK 79 (112)
T ss_dssp ECCCCHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTT
T ss_pred EEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 986599999999999848898743999998614887565411299999999998
No 376
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus}
Probab=48.03 E-value=13 Score=16.47 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=26.0
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9999970889998899998658901145899999
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L 78 (148)
+...|..++| ++++.|+.+|++++++.+.++++
T Consensus 24 I~~aL~~~~g-n~~~aA~~Lgi~r~tL~~klkk~ 56 (63)
T 3e7l_A 24 IEEKLREYDY-DLKRTAEEIGIDLSNLYRKIKSL 56 (63)
T ss_dssp HHHHHHHTTT-CHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999199-89999999895999999999994
No 377
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=47.50 E-value=12 Score=16.56 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=20.4
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9997088--99988999986589011458999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
..+.++| +.|+.+||+..|++++++.+--+
T Consensus 25 ~l~~~~G~~~~t~~~Ia~~agvs~~tlY~yF~ 56 (220)
T 3lhq_A 25 RLFSQQGVSATSLAEIANAAGVTRGAIYWHFK 56 (220)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC
T ss_conf 99998491407799999985889334776189
No 378
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=47.42 E-value=10 Score=17.14 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 1145899999984132
Q T0617 69 AAVSRTVKKLEEKKYI 84 (148)
Q Consensus 69 ~~vs~~i~~L~~~gli 84 (148)
..+...+....+.|.+
T Consensus 132 ~~~~~~l~~~~~~g~~ 147 (203)
T 3cdl_A 132 ETFSAWIRAAQKDGRL 147 (203)
T ss_dssp HHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999999986999
No 379
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4}
Probab=46.86 E-value=13 Score=16.35 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHCCC-------CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99989999999970889-------9988999986589011458999999841321256
Q T0617 38 IGMTEWRIISVLSSASD-------CSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~-------~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
+....=.+|..|..++| .++-+|.+.+++|+.+--+.|..|-+.+.|+...
T Consensus 222 ~~~~~e~il~~l~~~~G~l~~~dkS~pe~I~~~f~~SK~~fK~aiG~L~k~~~I~~~~ 279 (285)
T 3go5_A 222 LENDAQMILTYLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGKIKQDQ 279 (285)
T ss_dssp CCHHHHHHHHHHHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC
T ss_conf 5558999999999759934279999999999997919999999877876387499919
No 380
>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=46.82 E-value=10 Score=17.08 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=19.4
Q ss_pred HHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 997088--9998899998658901145899
Q T0617 48 VLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 48 ~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
.+.++| +.|+.+||+..|++++++.+--
T Consensus 20 l~~~~G~~~~t~~~IA~~agvs~~tlY~~F 49 (206)
T 3dew_A 20 LFAQKGFYGVSIRELAQAAGASISMISYHF 49 (206)
T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHHHS
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 999859252889999999594999998884
No 381
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=46.80 E-value=12 Score=16.70 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 999889999865890114589
Q T0617 54 DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~ 74 (148)
++|+.+||+..|++++++.+-
T Consensus 28 ~~ti~~IA~~agvs~~t~Y~~ 48 (202)
T 2d6y_A 28 GARIDRIAAEARANKQLIYAY 48 (202)
T ss_dssp SCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 077999999859198899678
No 382
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=46.67 E-value=13 Score=16.41 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=13.4
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++.+
T Consensus 27 ~~t~~~Ia~~agvs~~t~Y~ 46 (197)
T 2gen_A 27 ATTIEMIRDRSGASIGSLYH 46 (197)
T ss_dssp TCCHHHHHHHHCCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 17699999997909989977
No 383
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum atcc 13032} PDB: 1v7b_A 2zoy_A 2yvh_A* 2dh0_A* 2zoz_A*
Probab=46.52 E-value=13 Score=16.32 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=7.9
Q ss_pred CCHHHHHHHHCCCCCHHH
Q ss_conf 998899998658901145
Q T0617 55 CSVQKISDILGLDKAAVS 72 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs 72 (148)
.|+.+||+..|++++++.
T Consensus 25 ~s~~~IA~~aGvs~~~lY 42 (185)
T 2yve_A 25 LSYDSLAEATGLSKSGLI 42 (185)
T ss_dssp CCHHHHHHHHCCCHHHHH
T ss_pred CCHHHHHHHHCCCCCHHH
T ss_conf 879999998681923184
No 384
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=46.40 E-value=11 Score=16.82 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=20.0
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHH
Q ss_conf 9997088--99988999986589011458
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~ 73 (148)
..+.++| +.|+.+||+..|++++++-+
T Consensus 23 ~l~~e~G~~~~ti~~Ia~~agvs~~t~Y~ 51 (177)
T 3kkc_A 23 SLLQENDYSKITVQDVIGLANVGRSTFYS 51 (177)
T ss_dssp HHTTTSCTTTCCHHHHHHHHCCCHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99987497417899999987908876520
No 385
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=45.89 E-value=14 Score=16.25 Aligned_cols=31 Identities=10% Similarity=0.255 Sum_probs=21.9
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99997088--99988999986589011458999
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
+..+.++| +.|+.+||+..|++++++.+.-+
T Consensus 21 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 53 (210)
T 2xdn_A 21 ERAFYKRGVARTTLADIAELAGVTRGAIYWHFN 53 (210)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 999997591406699999998919889978869
No 386
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=45.87 E-value=14 Score=16.25 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHH-------HH-CCCCCHHHHHHHHCC-CCCHHHHHHHHH
Q ss_conf 99999998728999899999999-------70-889998899998658-901145899999
Q T0617 27 KSSTAYTQKFGIGMTEWRIISVL-------SS-ASDCSVQKISDILGL-DKAAVSRTVKKL 78 (148)
Q Consensus 27 ~~~~~~~~~~glt~~q~~iL~~l-------~~-~~~~t~~eLa~~l~i-~~~~vs~~i~~L 78 (148)
.+.+.+.+.+|.++.+|.-...+ .+ ..+.++.+||...|. +.+..++..++.
T Consensus 34 ~l~r~fk~~~g~s~~~~i~~~Rl~~a~~lL~~~~~~~si~~iA~~~Gf~~~s~F~r~Fk~~ 94 (108)
T 3mn2_A 34 GIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDYRDM 94 (108)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999998929999999999999999987669997099999992899889999999998
No 387
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=45.70 E-value=7.4 Score=18.00 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 9998999999997088--999889999865890114589999998413212
Q T0617 38 IGMTEWRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
++..|..+|..+.+.+ ++|..+|+..++++...+.+.+..|...|++..
T Consensus 197 ~s~~Q~~ILllfn~~~~~~lt~~ei~~~t~i~~~~l~~~L~~l~~~~~lk~ 247 (382)
T 3dpl_C 197 VTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKR 247 (382)
T ss_dssp EEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCCTTCSS
T ss_pred ECHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 719999999996047887546999998868888999999999872331245
No 388
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=45.68 E-value=12 Score=16.60 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHCCCCCHHH
Q ss_conf 9998899998658901145
Q T0617 54 DCSVQKISDILGLDKAAVS 72 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs 72 (148)
+.|+.+||+..|++++++-
T Consensus 31 ~~t~~~Ia~~agvs~~t~Y 49 (203)
T 3b81_A 31 NTTLAFIINKLGISKGALY 49 (203)
T ss_dssp TCCHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHH
T ss_conf 0769999998791888999
No 389
>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=45.62 E-value=14 Score=16.23 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=18.1
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9997088--999889999865890114589
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..+.++| ++|+.+||+..|++++++.+.
T Consensus 19 ~l~~~~G~~~~t~~~Ia~~agvs~~tlY~~ 48 (199)
T 2o7t_A 19 NLYRTHHHDSLTMENIAEQAGVGVATLYRN 48 (199)
T ss_dssp HHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHHC
T ss_conf 999984914077999999868690227761
No 390
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=45.43 E-value=14 Score=16.21 Aligned_cols=39 Identities=13% Similarity=0.320 Sum_probs=30.8
Q ss_pred HHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 997088999889999865890114589999998413212
Q T0617 48 VLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 48 ~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
+..+..|.+..+||+..++|-.+|.++|++..+...-.+
T Consensus 86 I~~ef~G~n~~eLArkY~LS~r~I~kIi~~~rk~~~~r~ 124 (129)
T 1rr7_A 86 IWNDFNGRNVSELTTRYGVTFNTVYKAIRRMRRLKYRQY 124 (129)
T ss_dssp HHHHCCSSCHHHHHHHHTCCHHHHHHHHHHHHHCC----
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999908998999999989779999999999998898700
No 391
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=45.41 E-value=8.1 Score=17.74 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=17.4
Q ss_pred CHHHHHHHHCCCCCHHHHH
Q ss_conf 9889999865890114589
Q T0617 56 SVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 56 t~~eLa~~l~i~~~~vs~~ 74 (148)
+++.||+.+|+++++|++.
T Consensus 12 ~~~kLA~~lGis~~aVsqW 30 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQW 30 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHC
T ss_pred CHHHHHHHHCCCHHHHHHC
T ss_conf 8999999929999999872
No 392
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomics, protein structure initiative; 2.35A {Lactobacillus reuteri 100-23}
Probab=45.25 E-value=14 Score=16.19 Aligned_cols=94 Identities=19% Similarity=0.139 Sum_probs=56.9
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCC------CCHHHHHHH-HHH
Q ss_conf 99999999708899988999986---58901145899999984132125674322300000------178889999-999
Q T0617 42 EWRIISVLSSASDCSVQKISDIL---GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAIN------LTEMGQELY-EVA 111 (148)
Q Consensus 42 q~~iL~~l~~~~~~t~~eLa~~l---~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~------LT~~G~~~~-~~~ 111 (148)
--.+|..|+.. +.|..||...| +++...+..+|.+|...|||- |.|...-. ....|...+ .++
T Consensus 64 ~~~Al~~Ls~r-~rS~~EL~~kL~~kg~~~~~Ie~vi~~L~e~gyld------D~ryA~~~v~~~~~~~~~G~~~I~~eL 136 (221)
T 3d5l_A 64 YSRMLDYLSYQ-MRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLID------DHAYAASYVRTMINTDLKGPGIIRQHL 136 (221)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99999982067-30099999999966999999999999999869988------899999999986012660599999999
Q ss_pred HH--HHHHHHHHHHHCCCHH-HHHHHHHHHHHHH
Q ss_conf 99--9999999998579998-9999999999999
Q T0617 112 SD--FAIEREKQLLEEFEEA-EKDQLFILLKKLR 142 (148)
Q Consensus 112 ~~--~~~~~~~~~~~~l~~e-e~~~l~~~L~~l~ 142 (148)
.. +.....++.++.++++ +......+..+..
T Consensus 137 ~~KGI~~~~Ie~al~e~~~e~e~e~a~~l~~kk~ 170 (221)
T 3d5l_A 137 RQKGIGESDIDDALTQFTPEVQAELAKKLALKLF 170 (221)
T ss_dssp HHTTCCHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9869999999999986686679999999999974
No 393
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ...
Probab=45.15 E-value=13 Score=16.38 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=8.5
Q ss_pred HCCCHHHH-HHHHHHHHHHHHHH
Q ss_conf 57999899-99999999999988
Q T0617 124 EEFEEAEK-DQLFILLKKLRNKV 145 (148)
Q Consensus 124 ~~l~~ee~-~~l~~~L~~l~~~l 145 (148)
...+.++. ..+...++-+.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~l~Gl 186 (194)
T 3bqz_B 164 HEQNINERIKLMNKFSQIFLNGL 186 (194)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 73891139999999999999987
No 394
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=44.40 E-value=14 Score=16.11 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=33.5
Q ss_pred HCCCCHHHHHHHHHHHHCCCC--CHHHHHHHHC-----CCCCHHHHHHHHHHHH
Q ss_conf 728999899999999708899--9889999865-----8901145899999984
Q T0617 35 KFGIGMTEWRIISVLSSASDC--SVQKISDILG-----LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~~--t~~eLa~~l~-----i~~~~vs~~i~~L~~~ 81 (148)
...||+.+|.+|..+..+++. +-.+|.+.+- .+..++...|.+|-++
T Consensus 34 ~i~Lt~~E~~lL~~L~~~~g~vvsr~~l~~~vwg~~~~~~~~~l~~~I~rLRkK 87 (120)
T 2z9m_A 34 DIELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREK 87 (120)
T ss_dssp EECCCHHHHHHHHHHHTTTTCCEEHHHHHHHHHCTTCCSCTHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCCEEEHHHHHHHHH
T ss_conf 997699999999999878995673999997615887789995730799999998
No 395
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP}
Probab=44.25 E-value=14 Score=16.09 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++.+
T Consensus 30 ~~t~~~Ia~~agvs~~t~Y~ 49 (194)
T 2nx4_A 30 AANMRDIATEAGYTNGALSH 49 (194)
T ss_dssp TCCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHC
T ss_conf 07699999987909988826
No 396
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=44.22 E-value=14 Score=16.09 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=19.7
Q ss_pred HHHHCC-CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 997088-9998899998658901145899
Q T0617 48 VLSSAS-DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 48 ~l~~~~-~~t~~eLa~~l~i~~~~vs~~i 75 (148)
.+.++| +.|+.+||+..|++++++.+..
T Consensus 25 l~~~~G~~~tv~~IA~~agvs~~t~Y~~F 53 (196)
T 2qwt_A 25 TFAAEGLGVPMDEIARRAGVGAGTVYRHF 53 (196)
T ss_dssp HHHHTCTTSCHHHHHHHTTSCHHHHHHHC
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99985977889999999695997998785
No 397
>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=44.21 E-value=14 Score=16.09 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=24.1
Q ss_pred CCCHHHHHHH----HHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 8999899999----9997088--999889999865890114589
Q T0617 37 GIGMTEWRII----SVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 37 glt~~q~~iL----~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
|+|...-.|| ..+.++| +.|+.+||+..|++++++.+.
T Consensus 1 ~~~e~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~tlY~~ 44 (170)
T 3egq_A 1 GMTDQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp -CCHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHC
T ss_conf 97689999999999999872923067999999868394207650
No 398
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=44.04 E-value=13 Score=16.37 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHCCCCCHHH
Q ss_conf 9998899998658901145
Q T0617 54 DCSVQKISDILGLDKAAVS 72 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs 72 (148)
+.|+.+||+..|++++++.
T Consensus 32 ~~s~~~Ia~~agvs~~tlY 50 (205)
T 1rkt_A 32 LTTMKDVVEESGFSRGGVY 50 (205)
T ss_dssp TCCHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHCCCCCCHH
T ss_conf 0889999998589965210
No 399
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=43.85 E-value=15 Score=16.05 Aligned_cols=45 Identities=16% Similarity=0.311 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHCCCC--CHHHHHHHH-C----CCCCHHHHHHHHHHHH
Q ss_conf 8999899999999708899--988999986-5----8901145899999984
Q T0617 37 GIGMTEWRIISVLSSASDC--SVQKISDIL-G----LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~--t~~eLa~~l-~----i~~~~vs~~i~~L~~~ 81 (148)
.||..||.+|..|..+++. +-.+|.+.+ + .+..++-..|.+|-+|
T Consensus 151 ~Lt~~E~~lL~~L~~~~~~vvsr~~L~~~vwg~~~~~~~~tl~~~I~rLR~K 202 (225)
T 1kgs_A 151 DLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKK 202 (225)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 2657999999998752434442999999871777787657699999999998
No 400
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=43.78 E-value=15 Score=16.04 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=20.0
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHH
Q ss_conf 9997088--99988999986589011458
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~ 73 (148)
..+.++| +.|+.+||+..|++++++.+
T Consensus 25 ~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 53 (203)
T 3ccy_A 25 AMFARQGYSETSIGDIARACECSKSRLYH 53 (203)
T ss_dssp HHHHHTCTTTSCHHHHHHHTTCCGGGGTT
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99997494528899999987909878867
No 401
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=43.73 E-value=13 Score=16.31 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=15.4
Q ss_pred HHHCC--CCCHHHHHHHHCCCCCHHHH
Q ss_conf 97088--99988999986589011458
Q T0617 49 LSSAS--DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 49 l~~~~--~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.++| +.|+.+||+..|++++++.+
T Consensus 21 ~~~~G~~~~s~~~IA~~agvs~~t~Y~ 47 (206)
T 1vi0_A 21 IAENGYHQSQVSKIAKQAGVADGTIYL 47 (206)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 998393407799999995988757986
No 402
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5}
Probab=43.70 E-value=15 Score=16.04 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=12.8
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++-+
T Consensus 22 ~~ti~~IA~~agvs~~tiY~ 41 (179)
T 2eh3_A 22 GTSVEEIVKRANLSKGAFYF 41 (179)
T ss_dssp TCCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCCCHHHH
T ss_conf 17699999987809341545
No 403
>3iuv_A Uncharacterized TETR family protein; APC6223, structural genomics, PSI-2, protein structure initiative; 2.55A {Streptomyces coelicolor A3}
Probab=43.70 E-value=15 Score=16.04 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=21.4
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 99997088--999889999865890114589
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
+..+.++| +.|+.+||+..|++++++.+.
T Consensus 20 ~~l~~~~G~~~~t~~~IA~~aGvs~~~~Y~~ 50 (201)
T 3iuv_A 20 IRVVGQKGIAGLSHRTVAAEADVPLGSTTYH 50 (201)
T ss_dssp HHHHHTTCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHH
T ss_conf 9999984913067999999868994519987
No 404
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3}
Probab=43.67 E-value=15 Score=16.03 Aligned_cols=40 Identities=8% Similarity=0.129 Sum_probs=29.2
Q ss_pred HCCCCHHHHH--HHHHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 7289998999--999997088--999889999865890114589
Q T0617 35 KFGIGMTEWR--IISVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 35 ~~glt~~q~~--iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
+-++|..++. .+..+.++| +.|+.+||+..|++++++-+.
T Consensus 13 ~~~~tr~~Il~aA~~l~~e~G~~~~t~~~IA~~aGvs~~~lY~~ 56 (237)
T 2hxo_A 13 QEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYWH 56 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGT
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 84558999999999999972924067999999979098889888
No 405
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=43.65 E-value=15 Score=16.03 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=27.7
Q ss_pred CCCHHHHH--HHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 89998999--999997088--99988999986589011458999
Q T0617 37 GIGMTEWR--IISVLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 37 glt~~q~~--iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
.+|...+. .+..+.++| +.|+.+||+.+|++++++.+...
T Consensus 5 ~lTR~~Il~AA~~lf~~~G~~~~T~~~IA~~aGvs~~tlY~~F~ 48 (234)
T 2opt_A 5 PLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAHVG 48 (234)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 24299999999999997194416899999997858779999879
No 406
>2rn7_A IS629 ORFA; helix, all alpha, unknown function; NMR {Shigella flexneri}
Probab=43.61 E-value=6.5 Score=18.37 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899988999986589011458999999841321
Q T0617 53 SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
Q Consensus 53 ~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~ 85 (148)
++.++.++|..+||+++++.+.++.....+-..
T Consensus 29 ~g~~~~~VA~~LGI~~~tL~~Wv~~~~~~~~~~ 61 (108)
T 2rn7_A 29 QWATICSIAPKIGCTPETLRVWVRQHERDTGGD 61 (108)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHTTSCCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
T ss_conf 655599999882999999999999972023567
No 407
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=43.27 E-value=15 Score=15.99 Aligned_cols=52 Identities=17% Similarity=0.354 Sum_probs=36.4
Q ss_pred HHHHHHHCCCCHHH--------------HHHHHHHHHCCCCCHHHHHHHHC-CCCCHHHHHHHHHHH
Q ss_conf 99999872899989--------------99999997088999889999865-890114589999998
Q T0617 29 STAYTQKFGIGMTE--------------WRIISVLSSASDCSVQKISDILG-LDKAAVSRTVKKLEE 80 (148)
Q Consensus 29 ~~~~~~~~glt~~q--------------~~iL~~l~~~~~~t~~eLa~~l~-i~~~~vs~~i~~L~~ 80 (148)
.+.+.+.||++..+ ..++....+.-+.+..+|+..+| -+++||...+++.++
T Consensus 7 ~~~Va~~~~v~~~~i~s~~R~~~i~~aR~iamyL~r~~t~~sl~~IG~~fg~RdHsTV~ha~~ki~~ 73 (94)
T 1j1v_A 7 QKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQ 73 (94)
T ss_dssp HHHHHHHTTCCHHHHHSCCCCHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9999989299899986678874888999999999998828999999999689984099999999999
No 408
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA binding protein; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=42.97 E-value=6 Score=18.59 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECC
Q ss_conf 88999889999865890114589999998413212567432230000
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAI 98 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l 98 (148)
.+..+..++++..+++++++...+.+|+++|..--....+.+|...+
T Consensus 38 ~~~~s~~~~a~l~~~~~~~~~~~~~~~e~~g~~~~~~~~g~~~~~~~ 84 (398)
T 3ez2_A 38 YQVYAKAALAKLPLLTRANVDYAVSEMEEKGYVFDKRPAGSSMKYAM 84 (398)
T ss_dssp CCCBCGGGGGGSTTCCHHHHHHHHHHHHHHTCCCCEEECSSSEEECB
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
T ss_conf 57677999987419987999999973112577877666886642245
No 409
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=42.83 E-value=15 Score=16.01 Aligned_cols=29 Identities=10% Similarity=0.306 Sum_probs=16.7
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9997088--9998899998658901145899
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
..++++| +.|+.+||+..|++++++.+.-
T Consensus 22 ~l~~~~G~~~~t~~~IA~~agvs~~~lY~~F 52 (202)
T 2i10_A 22 ELFWRQGYEGTSITDLTKALGINPPSLYAAF 52 (202)
T ss_dssp HHHHHHTTTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 9999869211779999999790999998871
No 410
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=42.69 E-value=15 Score=15.99 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHCCCCCHHH
Q ss_conf 9998899998658901145
Q T0617 54 DCSVQKISDILGLDKAAVS 72 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs 72 (148)
+.|+.+||+..|++++++.
T Consensus 28 ~~s~~~Ia~~agvs~~tiY 46 (194)
T 3dpj_A 28 QTSFVDISAAVGISRGNFY 46 (194)
T ss_dssp TCCHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHH
T ss_conf 1889999998584956687
No 411
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=42.62 E-value=15 Score=15.93 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=20.9
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9997088--9998899998658901145899
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
..+.++| +.|+.+||+..|++++++.+.-
T Consensus 23 ~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F 53 (192)
T 2fq4_A 23 ELLLESGFKAVTVDKIAERAKVSKATIYKWW 53 (192)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 9999859340779999999890998996346
No 412
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=42.42 E-value=14 Score=16.11 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
++|..+||+..|++++++.+
T Consensus 28 ~~s~~~Ia~~agvs~~tlY~ 47 (194)
T 2g7s_A 28 SFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp GCCHHHHHHHHCCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 18799999987909998847
No 413
>3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680}
Probab=42.33 E-value=15 Score=15.93 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++.+
T Consensus 28 ~~t~~~IA~~aGvs~~~iy~ 47 (190)
T 3jsj_A 28 GIGVEALCKAAGVSKRSMYQ 47 (190)
T ss_dssp TCCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 88299999997909999988
No 414
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, 2Fe-2S; HET: DNA; 2.80A {Escherichia coli K12} PDB: 2zhh_A
Probab=42.30 E-value=14 Score=16.22 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHH
Q ss_conf 8899988999986589011458999999841321256743223000001788
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEM 103 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~ 103 (148)
..-+|++|+|+.+|++..|+ ..-++.|+|.-..++ +....+.-.+-
T Consensus 9 ~~~~tIGevA~~~gvs~~TL----R~YE~~GLl~p~R~~--~g~R~Y~~~dl 54 (154)
T 2zhg_A 9 KALLTPGEVAKRSGVAVSAL----HFYESKGLITSIRNS--GNQRRYKRDVL 54 (154)
T ss_dssp -CCBCHHHHHHHHTSCHHHH----HHHHHTTSSCCEECT--TSCEEBCTTHH
T ss_pred CCCCCHHHHHHHHCCCHHHH----HHHHHCCCCCCCCCC--CCCEEEEHHHH
T ss_conf 44626999999988699999----999988899986378--98066316567
No 415
>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni}
Probab=42.13 E-value=15 Score=15.88 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=17.0
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHH
Q ss_conf 9997088--99988999986589011458
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~ 73 (148)
..+.++| +.|+.+||+..|++++++.+
T Consensus 24 ~lf~~~G~~~~s~~~Ia~~agvs~~tlY~ 52 (210)
T 2qco_A 24 ELFLTKGYQETSLSDIIKLSGGSYSNIYD 52 (210)
T ss_dssp HHHHHTTTTTCCHHHHHHHHCTTCTTCSS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 99997393528899999985889025887
No 416
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=42.04 E-value=15 Score=15.95 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=8.0
Q ss_pred CCCHHHHHHHHCCCCCHHH
Q ss_conf 9998899998658901145
Q T0617 54 DCSVQKISDILGLDKAAVS 72 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs 72 (148)
+.|+.+||+..|++++++.
T Consensus 55 ~~T~~~IA~~aGvs~gt~Y 73 (221)
T 3g7r_A 55 SVGIDRITAEAQVTRATLY 73 (221)
T ss_dssp TSCHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHH
T ss_conf 0789999999791988998
No 417
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia}
Probab=41.93 E-value=15 Score=16.02 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=18.3
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99997088--99988999986589011458
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~ 73 (148)
+..+.++| +.|+.+||+..|++++++.+
T Consensus 21 ~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~ 50 (219)
T 2w53_A 21 EACFHEHGVARTTLEMIGARAGYTRGAVYW 50 (219)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 999998592407799999984889542553
No 418
>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=41.90 E-value=15 Score=16.02 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHCCCCCHHH
Q ss_conf 9998899998658901145
Q T0617 54 DCSVQKISDILGLDKAAVS 72 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs 72 (148)
++|+.+||+..|++++++-
T Consensus 31 ~~ti~~Ia~~agvs~~t~Y 49 (196)
T 3he0_A 31 GLSMQKLANEAGVAAGTIY 49 (196)
T ss_dssp TCCHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHCCCCCCCCC
T ss_conf 0679999998099978651
No 419
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=41.81 E-value=15 Score=16.03 Aligned_cols=33 Identities=6% Similarity=0.092 Sum_probs=24.4
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9997088--99988999986589011458999999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
..+.++| +.|+.+||+..|++++++.+--+.-+
T Consensus 26 ~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~yF~sKe 60 (221)
T 3c2b_A 26 RLLVEGGEKALTTSGLARAANCSKESLYKWFGDRD 60 (221)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf 99997490408799999998909879998879989
No 420
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A
Probab=41.55 E-value=16 Score=15.82 Aligned_cols=47 Identities=13% Similarity=0.336 Sum_probs=33.1
Q ss_pred HHCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHCC-----CCCHHHHHHHHHHH
Q ss_conf 872899989999999970889--998899998658-----90114589999998
Q T0617 34 QKFGIGMTEWRIISVLSSASD--CSVQKISDILGL-----DKAAVSRTVKKLEE 80 (148)
Q Consensus 34 ~~~glt~~q~~iL~~l~~~~~--~t~~eLa~~l~i-----~~~~vs~~i~~L~~ 80 (148)
+...||..||.+|..+..+++ ++-.+|.+.+-- +..++...|.+|-+
T Consensus 28 ~~i~Lt~~E~~lL~~L~~~~~~vvsr~~l~~~vw~~~~~~~~~~i~~~I~rLRk 81 (106)
T 1gxq_A 28 EPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRK 81 (106)
T ss_dssp EECCCCHHHHHHHHHHHHSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 999759999999999986799887999998753076642243649999999999
No 421
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3}
Probab=41.28 E-value=16 Score=15.79 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=28.1
Q ss_pred CCCHHHHH--HHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 89998999--999997088--9998899998658901145899
Q T0617 37 GIGMTEWR--IISVLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 37 glt~~q~~--iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
..|..++. .+..+.+.| +.|+.+||+..|++++++.+..
T Consensus 28 ~~tre~Il~AA~~l~~e~G~~~~T~~~IA~~aGVs~~tlY~hF 70 (241)
T 2hxi_A 28 RWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHF 70 (241)
T ss_dssp CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 0079999999999999829240669999999790998999986
No 422
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=41.13 E-value=13 Score=16.30 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++-+
T Consensus 30 ~~si~~Ia~~agvs~~t~Y~ 49 (196)
T 3col_A 30 GVSTTKVAKRVGIAQSNVYL 49 (196)
T ss_dssp GCCHHHHHHHHTSCHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 28799999997909988858
No 423
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=41.13 E-value=15 Score=15.88 Aligned_cols=28 Identities=4% Similarity=0.078 Sum_probs=17.9
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9997088--999889999865890114589
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..+.++| +.|+.+||+..|++++++.+-
T Consensus 23 ~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 52 (198)
T 3cjd_A 23 AQIEAEGLASLRARELARQADCAVGAIYTH 52 (198)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCCHHH
T ss_conf 999982933132999999858895500241
No 424
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=41.01 E-value=16 Score=15.77 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999999708899988999986-----58901145899999984132125674
Q T0617 41 TEWRIISVLSSASDCSVQKISDIL-----GLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 41 ~q~~iL~~l~~~~~~t~~eLa~~l-----~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
.|..+...|..+.--++.||.+.+ .++.+|+||-++.| |.+. .++.
T Consensus 6 Rq~~I~~li~~~~i~tQ~eL~~~L~~~G~~vTQaTlSRDL~eL---g~vK-v~~~ 56 (64)
T 2p5k_A 6 RHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLVK-VPTN 56 (64)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCEE-EEET
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHC---CCEE-EECC
T ss_conf 9999999998389788999999999859835379989879990---9988-3579
No 425
>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=41.00 E-value=16 Score=15.84 Aligned_cols=20 Identities=5% Similarity=0.248 Sum_probs=10.5
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++.+
T Consensus 29 ~~s~~~IA~~agvs~~~ly~ 48 (209)
T 2gfn_A 29 AVTTRAVAEESGWSTGVLNH 48 (209)
T ss_dssp GCCHHHHHHHHSSCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 07799999996939999999
No 426
>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444}
Probab=40.87 E-value=15 Score=15.96 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=19.8
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9997088--999889999865890114589
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..+.++| +.|+.+||+..|++++++.+.
T Consensus 22 ~l~~~~G~~~~t~~~IA~~agvs~~tlY~y 51 (212)
T 2ras_A 22 AIVEERGGAGLTLSELAARAGISQANLSRY 51 (212)
T ss_dssp HHHHHHTSSCCCHHHHHHHHTSCHHHHTTT
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCHHHH
T ss_conf 999973913077999999868591403461
No 427
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=40.82 E-value=16 Score=15.75 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=35.0
Q ss_pred HCCCCHHHHHHHHHHHHCCCC--CHHHHHHHHC-----CCCCHHHHHHHHHHHH
Q ss_conf 728999899999999708899--9889999865-----8901145899999984
Q T0617 35 KFGIGMTEWRIISVLSSASDC--SVQKISDILG-----LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~~--t~~eLa~~l~-----i~~~~vs~~i~~L~~~ 81 (148)
...||..++.+|..|..+++. +-.+|.+.+- .+..++...|.+|-++
T Consensus 29 ~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vwg~~~~~~~~~i~~~I~rLRkk 82 (110)
T 1opc_A 29 PMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRM 82 (110)
T ss_dssp EECCCHHHHHHHHHHHHSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 997599999999999865889970999988840877677747899999999998
No 428
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=40.80 E-value=16 Score=15.74 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHCCCC--CHHHHHHHH-----CCCCCHHHHHHHHHHH
Q ss_conf 28999899999999708899--988999986-----5890114589999998
Q T0617 36 FGIGMTEWRIISVLSSASDC--SVQKISDIL-----GLDKAAVSRTVKKLEE 80 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~~--t~~eLa~~l-----~i~~~~vs~~i~~L~~ 80 (148)
..||..|+.+|..+..+++. |-.+|.+.+ ..+..++...|.+|-+
T Consensus 158 i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vwg~~~~~~~~tvd~~I~rLRk 209 (233)
T 1ys7_A 158 VDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRR 209 (233)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 8636145656765431261786498899997386778885779999999999
No 429
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1
Probab=40.65 E-value=16 Score=15.73 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=18.0
Q ss_pred HHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 997088--999889999865890114589
Q T0617 48 VLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 48 ~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
.+.++| +.|+.+||+..|++++++.+-
T Consensus 30 lf~e~G~~~~s~~~IA~~agvs~~tiY~y 58 (212)
T 1pb6_A 30 TFSQFGFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99985915188999999979498889787
No 430
>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3}
Probab=40.60 E-value=16 Score=15.72 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++-+
T Consensus 29 ~~tv~~IA~~AGvs~~t~y~ 48 (193)
T 2dg8_A 29 RVSHRRIAQRAGVPLGSMTY 48 (193)
T ss_dssp GCCHHHHHHHHTSCTHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 06799999998909999976
No 431
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=40.58 E-value=14 Score=16.13 Aligned_cols=26 Identities=8% Similarity=0.353 Sum_probs=15.1
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHH
Q ss_conf 9997088--9998899998658901145
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVS 72 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs 72 (148)
..+.++| +.|+.+||+..|++++++-
T Consensus 19 ~l~~~~G~~~~t~~~IA~~agvs~~tlY 46 (183)
T 1zk8_A 19 EIADANGVQEVTLASLAQTLGVRSPSLY 46 (183)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHT
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHH
T ss_conf 9999709440579999998588943033
No 432
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=40.47 E-value=16 Score=15.71 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=21.0
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9997088--999889999865890114589
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..+.++| +.|+.+||+..|++++++..-
T Consensus 34 ~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~ 63 (231)
T 2zcx_A 34 ELGTERGIREITLTDIAATVGMHKSALLRY 63 (231)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999970954077999999969598999788
No 433
>2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=40.42 E-value=16 Score=15.71 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=15.8
Q ss_pred HHHHCC--CCCHHHHHHHHCCCCCHHHH
Q ss_conf 997088--99988999986589011458
Q T0617 48 VLSSAS--DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 48 ~l~~~~--~~t~~eLa~~l~i~~~~vs~ 73 (148)
.+..+| +.|+.+||+..|++++++.+
T Consensus 19 l~~~~G~~~~ti~~IA~~aGvs~~siy~ 46 (180)
T 2fd5_A 19 ALLERGAVEPSVGEVMGAAGLTVGGFYA 46 (180)
T ss_dssp HHHHHTTTSCCHHHHHHHTTCCGGGGGG
T ss_pred HHHHHCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 9987095517799999986889424878
No 434
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=40.40 E-value=14 Score=16.15 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=19.4
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHH
Q ss_conf 9997088--99988999986589011458
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~ 73 (148)
..+.++| +.|+.+||+..|++++++.+
T Consensus 27 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 55 (211)
T 3him_A 27 EVFAAKGYGATTTREIAASLDMSPGAVYP 55 (211)
T ss_dssp HHHHHHCSTTCCHHHHHHHTTCCTTSSTT
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCHHC
T ss_conf 99998492507799999996899652222
No 435
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=40.05 E-value=16 Score=15.70 Aligned_cols=27 Identities=7% Similarity=0.183 Sum_probs=16.8
Q ss_pred HHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 997088--999889999865890114589
Q T0617 48 VLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 48 ~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
.+.++| +.|+.+||+..|++++++.+.
T Consensus 38 lf~~~G~~~~s~~~Ia~~agvs~~tiY~~ 66 (217)
T 3mvp_A 38 LFSDKTYFNVTTNEIAKKADVSVGTLYAY 66 (217)
T ss_dssp HHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHCCCCCHHHHC
T ss_conf 99871934278999999878094415542
No 436
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=39.79 E-value=13 Score=16.28 Aligned_cols=39 Identities=8% Similarity=0.157 Sum_probs=27.1
Q ss_pred CCCHHHHH--HHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 89998999--999997088--9998899998658901145899
Q T0617 37 GIGMTEWR--IISVLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 37 glt~~q~~--iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
.+|..+.. .+..+.++| +.|+.+||+..|++++++.+..
T Consensus 18 ~~tR~~Il~AA~~lf~~~G~~~~S~~~IA~~aGvs~~tlY~~F 60 (243)
T 2g7l_A 18 ALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYV 60 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 6499999999999999809330789999999791988898877
No 437
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118}
Probab=39.75 E-value=17 Score=15.64 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=48.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC------CHHHHHHH-HHHHH
Q ss_conf 999999708899988999986---589011458999999841321256743223000001------78889999-99999
Q T0617 44 RIISVLSSASDCSVQKISDIL---GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINL------TEMGQELY-EVASD 113 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l---~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~L------T~~G~~~~-~~~~~ 113 (148)
.++.+|+ ..+.|.++|...| ++++..+..+|++|+..|||- |.|.....+ ...|...+ ..+..
T Consensus 23 ~Al~~Ls-~r~rS~~El~~kL~~kg~~~~~i~~vi~~L~~~gyid------D~ryA~~~v~~~~~~k~~G~~~I~~~L~~ 95 (177)
T 3e3v_A 23 AALNYLS-YQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLIN------DKNYAESYVRTMMNTSDKGPKVIKLNLSK 95 (177)
T ss_dssp HHHHHHH-SSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSC------HHHHHHHHHHHHHHHCCCCHHHHHHHHHT
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999832-6621599999999876999999999999999959989------89999999999976147449999999998
Q ss_pred --HHHHHHHHHHHCCCHH-HHHHHHHHHHHHH
Q ss_conf --9999999998579998-9999999999999
Q T0617 114 --FAIEREKQLLEEFEEA-EKDQLFILLKKLR 142 (148)
Q Consensus 114 --~~~~~~~~~~~~l~~e-e~~~l~~~L~~l~ 142 (148)
+...+.+..++.++++ +......++.+..
T Consensus 96 kGI~~~~i~~al~~~~~~~e~~~a~~l~~k~~ 127 (177)
T 3e3v_A 96 KGIDDNIAEDALILYTDKLQVEKGVTLAEKLA 127 (177)
T ss_dssp TTCCHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 59999999999987582879999999999873
No 438
>3gzi_A Transcriptional regulator, TETR family; YP_001095692.1, TETR family transcriptional regulator, structural genomics; 2.05A {Shewanella loihica pv-4}
Probab=39.72 E-value=17 Score=15.64 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 14589999998413212
Q T0617 70 AVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 70 ~vs~~i~~L~~~gli~r 86 (148)
....++..+.+.|.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~ 156 (218)
T 3gzi_A 140 ENIAIFQRLKDKNLLKD 156 (218)
T ss_dssp CCTTHHHHHHHTTCBCT
T ss_pred HHHHHHHHHHHCCCCCC
T ss_conf 99999999998499888
No 439
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=39.64 E-value=14 Score=16.15 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=16.5
Q ss_pred HHHHCC--CCCHHHHHHHHCCCCCHHHH
Q ss_conf 997088--99988999986589011458
Q T0617 48 VLSSAS--DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 48 ~l~~~~--~~t~~eLa~~l~i~~~~vs~ 73 (148)
.+.++| ++|+.+||+..|++++++.+
T Consensus 28 l~~~~G~~~~t~~~Ia~~aGvs~gtlY~ 55 (216)
T 2oi8_A 28 QIATAGASALSLNAIAKRMGMSGPALYR 55 (216)
T ss_dssp HHHHHCTTSCCHHHHHHHTTCCHHHHHT
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9997194418899999997979869999
No 440
>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP}
Probab=39.63 E-value=17 Score=15.63 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=12.8
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++.+
T Consensus 34 ~~t~~~Ia~~agvs~~tlY~ 53 (212)
T 3knw_A 34 GVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp TCCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 28899999997909999988
No 441
>3lwj_A Putative TETR-family transcriptional regulator; structural genomics, joint center for structural genomics, JCSG; 2.07A {Syntrophomonas wolfei subsp}
Probab=39.46 E-value=17 Score=15.61 Aligned_cols=20 Identities=10% Similarity=0.209 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++.+
T Consensus 32 ~~ti~~Ia~~agvs~~t~Y~ 51 (202)
T 3lwj_A 32 NTSIRDIIALSEVGTGTFYN 51 (202)
T ss_dssp TCCHHHHHHHHCSCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 07699999987908878988
No 442
>2np5_A Transcriptional regulator; TETR family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.39 E-value=16 Score=15.85 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++.+
T Consensus 29 ~~t~~~IA~~agvs~~tlY~ 48 (203)
T 2np5_A 29 GASVREVAKRAGVSIGAVQH 48 (203)
T ss_dssp GCCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 08799999986908988850
No 443
>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=38.99 E-value=16 Score=15.68 Aligned_cols=19 Identities=42% Similarity=0.587 Sum_probs=11.9
Q ss_pred CCCHHHHHHHHCCCCCHHH
Q ss_conf 9998899998658901145
Q T0617 54 DCSVQKISDILGLDKAAVS 72 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs 72 (148)
+.|+.+||+..|++++++.
T Consensus 34 ~~s~~~Ia~~agvs~~tiY 52 (199)
T 3crj_A 34 DLTIQRIADEYGKSTAAVH 52 (199)
T ss_dssp TCCHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHH
T ss_conf 0789999999791999998
No 444
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=38.74 E-value=15 Score=16.02 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++.+
T Consensus 34 ~~ti~~Ia~~agvs~~~lY~ 53 (156)
T 3ljl_A 34 KMSYTTLSQQTGVSRTGISH 53 (156)
T ss_dssp HCCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 07799999986888608988
No 445
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=38.59 E-value=11 Score=16.76 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=7.5
Q ss_pred CCHHHHHHHHCCCCCHHH
Q ss_conf 998899998658901145
Q T0617 55 CSVQKISDILGLDKAAVS 72 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs 72 (148)
.|+.+||+..|++++++.
T Consensus 29 ~t~~~Ia~~agvs~~t~Y 46 (195)
T 3frq_A 29 FTLSGVAKEVGLSRAALI 46 (195)
T ss_dssp CCHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHCCCCCCHH
T ss_conf 779999998789977176
No 446
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=38.59 E-value=16 Score=15.70 Aligned_cols=29 Identities=10% Similarity=0.277 Sum_probs=21.1
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 99997088--999889999865890114589
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
+..+.++| +.|+.+||+..|++++++.+-
T Consensus 33 ~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~ 63 (214)
T 2zb9_A 33 GELLLTEGTAQLTFERVARVSGVSKTTLYKW 63 (214)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHC
T ss_conf 9999983944088999999968785347422
No 447
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=38.53 E-value=17 Score=15.52 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 8999899999999708899988999986-----58901145899999984132125
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDIL-----GLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l-----~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
.++..+..+|..++.. +.+..+++..+ +++.+.+...++.|++.|+|++.
T Consensus 279 ~l~~~~~~il~~la~~-~~~~~~i~~~~~~~~~~~~~~~~~~~L~~L~~~~lI~~~ 333 (350)
T 2qen_A 279 RRSPRYVDILRAIALG-YNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHCHHHHHHHHHHHTT-CCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHCC-CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 0899999999999768-997789999998622799999999999999978997998
No 448
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=38.47 E-value=16 Score=15.71 Aligned_cols=31 Identities=6% Similarity=0.078 Sum_probs=22.0
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99997088--99988999986589011458999
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
+..+.++| +.|+.+||+..|++++++.+--+
T Consensus 45 ~~l~~e~G~~~~si~~IA~~agvs~~tlY~yF~ 77 (237)
T 3kkd_A 45 MRLIVRDGVRAVRHRAVAAEAQVPLSATTYYFK 77 (237)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCTTTC-----
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 999997492508799999998929899988788
No 449
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP}
Probab=38.45 E-value=17 Score=15.51 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++.+
T Consensus 34 ~~ti~~IA~~agvs~~t~Y~ 53 (203)
T 3f1b_A 34 ETSMDAIAAKAEISKPMLYL 53 (203)
T ss_dssp TCCHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 17799999998909889978
No 450
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=38.31 E-value=18 Score=15.49 Aligned_cols=57 Identities=9% Similarity=0.216 Sum_probs=44.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH--H----HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999998728999899999999--7----0889998899998658901145899999984132
Q T0617 28 SSTAYTQKFGIGMTEWRIISVL--S----SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYI 84 (148)
Q Consensus 28 ~~~~~~~~~glt~~q~~iL~~l--~----~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli 84 (148)
....+.....|.+..|..+-.+ . ..+..+-++--....+++.-++++-+-+++.|||
T Consensus 26 ~E~~LC~~lrL~P~~YL~~K~~Li~E~~k~gg~l~k~da~~l~kiD~~K~~rIydfl~~~GWI 88 (88)
T 2elj_A 26 DEQQLCIQLKILPKPYLVLKEVMFRELLKTGGNLSKSACRELLNIDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 999999991999399999999999999983998639999998742648799999999986999
No 451
>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: a.4.1.9 a.121.1.1 PDB: 3g1m_A* 1u9n_A* 1u9o_A*
Probab=38.09 E-value=18 Score=15.47 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=21.0
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 99997088--9998899998658901145899
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
+..+.++| +.|+.+||+..|++++++.+.-
T Consensus 34 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 65 (216)
T 1t56_A 34 ENLLEDRPLADISVDDLAKGAGISRPTFYFYF 65 (216)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCC
T ss_conf 99999709440779999999685866660358
No 452
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=37.74 E-value=18 Score=15.44 Aligned_cols=32 Identities=6% Similarity=0.193 Sum_probs=24.3
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99997088--999889999865890114589999
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
+..+.++| +.|+.+||+..|++++++.+-.+.
T Consensus 49 ~~l~~~~G~~~~T~~~IA~~aGVs~~t~Y~~F~s 82 (214)
T 2guh_A 49 GRAFATRPYREITLKDIAEDAGVSAPLIIKYFGS 82 (214)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 9999984934067999999949498699888288
No 453
>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2tct_A* 2trt_A* 1qpi_A* 1a6i_A 2vkv_A* 3fk7_A* 3fk6_A* 2ns7_A 2ns8_A
Probab=37.72 E-value=17 Score=15.57 Aligned_cols=29 Identities=14% Similarity=0.402 Sum_probs=21.9
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 99997088--999889999865890114589
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
+..+.+.| +.|+.+||+..|++++++.+-
T Consensus 13 ~~lf~~~G~~~~sv~~IA~~aGvs~~tlY~~ 43 (207)
T 2vke_A 13 LELLNETGIDGLTTRKLAQKLGIEQPTLYWH 43 (207)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999973935278999999979198799888
No 454
>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=37.71 E-value=18 Score=15.43 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=19.3
Q ss_pred HHHHCC--CCCHHHHHHHHCCCCCHHHH
Q ss_conf 997088--99988999986589011458
Q T0617 48 VLSSAS--DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 48 ~l~~~~--~~t~~eLa~~l~i~~~~vs~ 73 (148)
.+.++| ..|+++||+..|++++++.+
T Consensus 25 L~~e~G~~~~Tv~~Ia~~agvs~~t~Y~ 52 (195)
T 2iu5_A 25 LMQSNAYHQISVSDIMQTAKIRRQTFYN 52 (195)
T ss_dssp HHHHSCGGGCCHHHHHHHHTSCGGGGGG
T ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9987697406799999987938766768
No 455
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=37.68 E-value=18 Score=15.43 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHCCC
Q ss_conf 8899988999986589-011458999999841321256
Q T0617 52 ASDCSVQKISDILGLD-KAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~-~~~vs~~i~~L~~~gli~r~~ 88 (148)
.+.+...++|..++++ +-.+--+++-|+.-|+|++..
T Consensus 28 ~~~i~l~~aa~~L~v~~kRRiYDI~NVLE~igli~K~~ 65 (76)
T 1cf7_A 28 DGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 98441999999865853046999999985604012557
No 456
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=37.66 E-value=18 Score=15.43 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 899988999986589011458999
Q T0617 53 SDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 53 ~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
.+.|+.+||+..|++++++.+-.+
T Consensus 26 ~~~s~~~IA~~agvs~~~lY~~F~ 49 (235)
T 2fbq_A 26 AETSLRLITSKAGVNLAAVNYHFG 49 (235)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHTC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 407799999997939889999859
No 457
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=37.62 E-value=6.8 Score=18.26 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=20.9
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 6589011458999999841321256743
Q T0617 64 LGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 64 l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
+..+.+.+-+.|..|..++|++|..+..
T Consensus 58 F~p~~~~iK~~Ie~LIekeYi~R~~~d~ 85 (92)
T 1iuy_A 58 FLPSPVVIKKRIEGLIEREYLARTPEDR 85 (92)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEECSSCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8999999999999999777884279998
No 458
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406}
Probab=37.58 E-value=18 Score=15.42 Aligned_cols=18 Identities=22% Similarity=0.494 Sum_probs=7.9
Q ss_pred CCCHHHHHHHHCCCCCHH
Q ss_conf 999889999865890114
Q T0617 54 DCSVQKISDILGLDKAAV 71 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~v 71 (148)
+.|+.+||+..|++++++
T Consensus 31 ~~s~~~IA~~agvs~~tl 48 (216)
T 3f0c_A 31 KTTMNEIASDVGMGKASL 48 (216)
T ss_dssp SCCHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHCCCHHHH
T ss_conf 078999999879198789
No 459
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=37.53 E-value=18 Score=15.41 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=24.7
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9997088--99988999986589011458999999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
..+.+.| +.|+.+||+..|++++++.+--..-.
T Consensus 59 ~lf~e~G~~~vTv~~IA~~AGVs~gtlY~hF~sK~ 93 (260)
T 2of7_A 59 GLIRQQGYEATTVEQIAERAEVSPSTVLRYFPTRE 93 (260)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf 99998194538899999996988989999858999
No 460
>2hyt_A TETR-family transcriptional regulator; YP_049917.1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=37.33 E-value=18 Score=15.39 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=6.3
Q ss_pred CCHHHHHHHHCCCCCHH
Q ss_conf 99889999865890114
Q T0617 55 CSVQKISDILGLDKAAV 71 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~v 71 (148)
.|+.+||+..|++++++
T Consensus 33 ~ti~~Ia~~agvs~~t~ 49 (197)
T 2hyt_A 33 TSMDDLTAQASLTRGAL 49 (197)
T ss_dssp CCHHHHHHHHTCCTTHH
T ss_pred CCHHHHHHHHCCCCCHH
T ss_conf 77999999838392306
No 461
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling protein; NMR {Helicobacter pylori J99}
Probab=37.26 E-value=18 Score=15.45 Aligned_cols=46 Identities=11% Similarity=0.307 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHCCC--CCHHHHHHHH-C----CCCCHHHHHHHHHHHH
Q ss_conf 2899989999999970889--9988999986-5----8901145899999984
Q T0617 36 FGIGMTEWRIISVLSSASD--CSVQKISDIL-G----LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~--~t~~eLa~~l-~----i~~~~vs~~i~~L~~~ 81 (148)
..||..++.+|..|..+++ ++-.+|.+.+ + .+..++...|.+|-++
T Consensus 28 v~Lt~~E~~lL~~L~~~~g~~vsr~~l~~~vw~~~~~~~~~~l~~~I~rLRkk 80 (109)
T 2hqn_A 28 VEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQK 80 (109)
T ss_dssp EECCCSTHHHHHHHHHHTCSEEEHHHHHHHHCCSCGGGCTTHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 96499999999999967999878999999860988775745099999999998
No 462
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=37.25 E-value=18 Score=15.39 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=18.3
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9997088--999889999865890114589
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..+.++| +.|+.+||+..|++++++.+-
T Consensus 28 ~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 57 (207)
T 2rae_A 28 ELFTEQGFDATSVDEVAEASGIARRTLFRY 57 (207)
T ss_dssp HHHHHHCTTTSCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999972903067999999979199899888
No 463
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=36.92 E-value=13 Score=16.45 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99988999986589011458999
Q T0617 54 DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
+.|+.+||+..|++++++.+--+
T Consensus 27 ~~si~~IA~~agvs~~tlY~yF~ 49 (186)
T 2jj7_A 27 GTSIQEIAKEAKVNVAMASYYFN 49 (186)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHHS
T ss_pred CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 18799999987919887778779
No 464
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=36.40 E-value=17 Score=15.54 Aligned_cols=20 Identities=15% Similarity=0.441 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHCCCCCHHHH
Q ss_conf 99988999986589011458
Q T0617 54 DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.|+.+||+..|++++++.+
T Consensus 32 ~~t~~~IA~~agvs~~t~Y~ 51 (200)
T 2hyj_A 32 GITIGRLAEELEMSKSGVHK 51 (200)
T ss_dssp GCCHHHHHHHHTCCHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 47899999987819788956
No 465
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=36.29 E-value=19 Score=15.29 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=21.5
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9997088--9998899998658901145899
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
..+.++| +.|+.+||+..|++++++-+--
T Consensus 28 ~l~~~~G~~~~ti~~Ia~~agvs~~tlY~~F 58 (208)
T 3cwr_A 28 RLLSSGGAAAMTMEGVASEAGIAKKTLYRFA 58 (208)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 9999859140679999998588966502479
No 466
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=36.04 E-value=5.8 Score=18.69 Aligned_cols=53 Identities=11% Similarity=0.304 Sum_probs=37.1
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECC
Q ss_conf 999997088999889999865890114589999998413212567432230000
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAI 98 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l 98 (148)
++.++...+..+.+-|-+++.+--..+.|+++.||+.|+|--... .-.|.+.+
T Consensus 455 a~~~v~~~~~~StS~lQR~l~IGYnRAariid~lE~~Givgp~~g-sk~ReVLv 507 (512)
T 2ius_A 455 AVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGH-NGNREVLA 507 (512)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHCCCEEHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCCEEEC
T ss_conf 999999729671999976325865799999999997779887778-97870708
No 467
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=35.98 E-value=19 Score=15.25 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9998899998658901145899
Q T0617 54 DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i 75 (148)
+.|+.+||+..|++++++.+--
T Consensus 26 ~~si~~Ia~~agvs~~tiY~~F 47 (191)
T 1sgm_A 26 ATGLNQIVKESGAPKGSLYHFF 47 (191)
T ss_dssp TCCHHHHHHHHCCCSCHHHHST
T ss_pred CCCHHHHHHHHCCCHHHHHHHC
T ss_conf 0669999998790988998885
No 468
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=35.93 E-value=19 Score=15.25 Aligned_cols=60 Identities=27% Similarity=0.306 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHH
Q ss_conf 9899999999708899988999986-----5890114589999998413212567432230000017888
Q T0617 40 MTEWRIISVLSSASDCSVQKISDIL-----GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMG 104 (148)
Q Consensus 40 ~~q~~iL~~l~~~~~~t~~eLa~~l-----~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G 104 (148)
..|..|...|.+++-.||.||.+.| .++.+|+||-++.| |++. .+++ ++..++..+.+.+
T Consensus 20 ~R~~~I~~lI~~~~I~tQeeL~~~L~~~Gi~vTQATiSRDLkeL---givK-v~~~-~G~~~Y~~~~~~~ 84 (170)
T 3lap_A 20 GRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEEL---GAVK-LRGA-DGGTGIYVVPEDG 84 (170)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCEE-ECCT-TCTTCEEECCC--
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHH---CCEE-EECC-CCCEEEEECCCCC
T ss_conf 99999999997589778999999999859864089989889981---8888-6538-9988999717777
No 469
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=35.65 E-value=19 Score=15.22 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=23.1
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 99997088--9998899998658901145899
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
+..+.++| +.|+.+||+..|++++++.+--
T Consensus 50 ~~l~~e~G~~~~Ti~~IA~~agVs~~tlY~yF 81 (225)
T 2id3_A 50 GDALAADGFDALDLGEIARRAGVGKTTVYRRW 81 (225)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCC
T ss_conf 99999849340779999999691988870107
No 470
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=35.52 E-value=19 Score=15.22 Aligned_cols=37 Identities=11% Similarity=0.265 Sum_probs=25.6
Q ss_pred CCCHHHHH--HHHHHHHCC--CCCHHHHHHHHCCCCCHHHH
Q ss_conf 89998999--999997088--99988999986589011458
Q T0617 37 GIGMTEWR--IISVLSSAS--DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 37 glt~~q~~--iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~ 73 (148)
.++..++. .+..+.++| +.|+.+||+..|++++++-+
T Consensus 24 ~~~Re~Il~AA~~lf~e~G~~~~T~~~IA~~aGvs~~tlY~ 64 (211)
T 3fiw_A 24 KMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYW 64 (211)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 87999999999999998593536599999998938869999
No 471
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=35.51 E-value=19 Score=15.21 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=28.8
Q ss_pred HHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999997088--999889999865890114589999998
Q T0617 45 IISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 45 iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
++..|...| ..+..+||..++++...+.+++.++..
T Consensus 37 lI~~LD~~GyL~~~~~eia~~l~~~~~~ve~vl~~lq~ 74 (76)
T 2k9l_A 37 LLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVLR 74 (76)
T ss_dssp HHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99745988875889999999979099999999999862
No 472
>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP}
Probab=35.17 E-value=20 Score=15.17 Aligned_cols=29 Identities=7% Similarity=0.200 Sum_probs=21.1
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9997088--9998899998658901145899
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
..+.++| +.|+.+||+..|++++++.+.-
T Consensus 33 ~l~~~~G~~~~si~~IA~~agvs~~t~Y~~F 63 (207)
T 3bjb_A 33 ELATEKELARVQMHEVAKRAGVAIGTLYRYF 63 (207)
T ss_dssp HHHHHSCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 9999739030779999999890998997757
No 473
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=35.03 E-value=20 Score=15.16 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=33.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECC
Q ss_conf 999999997088999889999865890114589999998413212567432230000
Q T0617 42 EWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAI 98 (148)
Q Consensus 42 q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l 98 (148)
-..+|..|.+..|.+..+||..++.+...+...+..+- -++. | .|+|..-+
T Consensus 24 ~~~llr~la~G~Pvt~~~lA~~~~~~~~~v~~~L~~~~---~i~~--D-~~G~Iv~y 74 (220)
T 3f2g_A 24 LVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT---STEY--D-KDGNIIGY 74 (220)
T ss_dssp HHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT---TCEE--C-TTSCEEES
T ss_pred HHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCC---CCEE--C-CCCCEEEE
T ss_conf 99999999669999989998760999999999998578---8517--7-99858961
No 474
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=34.90 E-value=20 Score=15.14 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99988999986589011458999
Q T0617 54 DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
+.|+.+||+..|++++++-+--.
T Consensus 39 ~~s~~~IA~~Agvs~~tlY~~F~ 61 (215)
T 2hku_A 39 GVPITQICAAAGAHPNQVTYYYG 61 (215)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHHS
T ss_pred CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 78699999986504236888659
No 475
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, coiled coil, helix-turn helix, domain swapped, condensin, cell cycle; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=34.72 E-value=20 Score=15.12 Aligned_cols=74 Identities=7% Similarity=0.179 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHH------CCCCCHHHHHHHH-------CCCCC----HHHHHHHHHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 899989999999970------8899988999986-------58901----145899999984132125674322300000
Q T0617 37 GIGMTEWRIISVLSS------ASDCSVQKISDIL-------GLDKA----AVSRTVKKLEEKKYIEVNGHSEDKRTYAIN 99 (148)
Q Consensus 37 glt~~q~~iL~~l~~------~~~~t~~eLa~~l-------~i~~~----~vs~~i~~L~~~gli~r~~~~~D~R~~~l~ 99 (148)
.|++..+..|..|.- .+++.-++|-..+ +-++- .++..|++|++.+++.|-.+..--+.-.+.
T Consensus 23 ~L~~erlafL~Aia~~~~e~~d~E~~E~~l~D~fr~V~~~f~q~~et~~~RANNaIn~lv~QrLLsrf~se~~dg~~iYR 102 (287)
T 1t98_A 23 SLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYR 102 (287)
T ss_dssp EECHHHHHHHHHHHHHHHSCCSSCBCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTSEEECC--------CEE
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 68888999999999964400155446358999999998720668611878888899999999999872232115654012
Q ss_pred CCHHHHHHHHH
Q ss_conf 17888999999
Q T0617 100 LTEMGQELYEV 110 (148)
Q Consensus 100 LT~~G~~~~~~ 110 (148)
|||-|..+.+-
T Consensus 103 LT~La~gi~dy 113 (287)
T 1t98_A 103 LTPLGIGITDY 113 (287)
T ss_dssp ECHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 02875112488
No 476
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99}
Probab=34.60 E-value=20 Score=15.11 Aligned_cols=46 Identities=11% Similarity=0.283 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHHCCC--CCHHHHHHHHC-----CCCCHHHHHHHHHHHH
Q ss_conf 2899989999999970889--99889999865-----8901145899999984
Q T0617 36 FGIGMTEWRIISVLSSASD--CSVQKISDILG-----LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~--~t~~eLa~~l~-----i~~~~vs~~i~~L~~~ 81 (148)
..||..+|.+|..|..+++ .+-.+|.+.+- .+..++...|.+|-++
T Consensus 142 v~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vwg~~~~~~~~~ld~~I~rLRkK 194 (223)
T 2hqr_A 142 VEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQK 194 (223)
T ss_dssp ECCCSTTTHHHHHHHHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 22584299999999968991573999999962887788867899999999998
No 477
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=34.56 E-value=20 Score=15.11 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=21.9
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 99997088--999889999865890114589
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
+..+.++| +.|+.+||+..|++++++.+-
T Consensus 41 ~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~y 71 (218)
T 3dcf_A 41 TELFREKGYYATSLDDIADRIGFTKPAIYYY 71 (218)
T ss_dssp HHHHHHTCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999985935177999999979098688687
No 478
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=34.50 E-value=18 Score=15.37 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=19.5
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99889999865890114589999
Q T0617 55 CSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
++.+|+++.+|++++++-+.++.
T Consensus 11 l~~keV~~~~g~srstiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH
T ss_pred ECHHHHHHHHCCCHHHHHHHHHC
T ss_conf 64999999979789998667318
No 479
>3bhq_A Transcriptional regulator; NP_105615.1, bacterial regulatory proteins, TETR family, structural genomics; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099}
Probab=34.15 E-value=20 Score=15.06 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=6.2
Q ss_pred CCHHHHHHHHCCCCCHH
Q ss_conf 99889999865890114
Q T0617 55 CSVQKISDILGLDKAAV 71 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~v 71 (148)
.|+.+||+..|++++++
T Consensus 33 ~si~~IA~~agvs~~~i 49 (211)
T 3bhq_A 33 TSMEEIATKAGASKQTV 49 (211)
T ss_dssp CCHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHCCCCCHH
T ss_conf 88999999848893306
No 480
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=34.07 E-value=20 Score=15.06 Aligned_cols=29 Identities=7% Similarity=0.159 Sum_probs=20.8
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 99997088--999889999865890114589
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
+..+.++| ++|+.+||+..|++++++.+-
T Consensus 51 ~~Lf~e~G~~~~T~~~IA~~AGvs~~t~Y~h 81 (273)
T 3c07_A 51 MRLFQERGYDRTTMRAIAQEAGVSVGNAYYY 81 (273)
T ss_dssp HHHHHHTCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999984933178999999989199999999
No 481
>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A*
Probab=33.79 E-value=21 Score=15.03 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=18.2
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHH
Q ss_conf 9997088--99988999986589011458
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~ 73 (148)
..+.++| ..|+.+||+..+++++++.+
T Consensus 55 ~lf~~~G~~~~Tv~~IA~~AGVsk~tlY~ 83 (256)
T 3g1l_A 55 NLLEDRPLADISVDDLAKGAGISRPTFYF 83 (256)
T ss_dssp HHTTTSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99998392316299999997909988836
No 482
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=33.74 E-value=21 Score=15.02 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=13.7
Q ss_pred CCHHHHHHHHCCCCCHHHHH
Q ss_conf 99889999865890114589
Q T0617 55 CSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~ 74 (148)
.|+.+||+..|++++++-+.
T Consensus 36 ~Ti~~IA~~agvs~~tlY~~ 55 (199)
T 2rek_A 36 ASLEEIARRAGVGSATLHRH 55 (199)
T ss_dssp CCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHH
T ss_conf 87999999979199999867
No 483
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=33.69 E-value=13 Score=16.33 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCHHH
Q ss_conf 889998899998658901145899999984132125674322300000178889999999999999999998-5799989
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLL-EEFEEAE 130 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~ee 130 (148)
.+-.|..|+|+.+|+++++|.+. +.+..++.... ....+.-...+++.|.- .+........+. .++++.+
T Consensus 29 ~~~lt~~evA~~LGvs~~~V~~~---i~~g~Llav~~-gg~~~~P~~qf~~~g~~-----l~~L~gvl~vL~d~g~~~~~ 99 (148)
T 2kfs_A 29 EPTYDLPRVAELLGVPVSKVAQQ---LREGHLVAVRR-AGGVVIPQVFFTNSGQV-----VKSLPGLLTILHDGGYRDTE 99 (148)
T ss_dssp SCEEEHHHHHHHHTCCHHHHHHH---HHTTSCCCEEE-TTEEEEEGGGBCTTSCB-----CTTHHHHHHHHHHTTCCHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH---HHCCCEEEEEC-CCEEEEEEEEECCCCCC-----CCCCHHHHHHHHHCCCCHHH
T ss_conf 66348999999969888999999---98794799970-99379843787379962-----23417899999856998799
Q ss_pred HHHHH
Q ss_conf 99999
Q T0617 131 KDQLF 135 (148)
Q Consensus 131 ~~~l~ 135 (148)
+..+.
T Consensus 100 ~~~WL 104 (148)
T 2kfs_A 100 IMRWL 104 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99998
No 484
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=33.53 E-value=21 Score=15.00 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHCCC--CCHHHHHHHHC---CCCCHHHHHHHHHHHH
Q ss_conf 899989999999970889--99889999865---8901145899999984
Q T0617 37 GIGMTEWRIISVLSSASD--CSVQKISDILG---LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~--~t~~eLa~~l~---i~~~~vs~~i~~L~~~ 81 (148)
.||..|+.+|..+..+++ .+-.+|.+.+. ++..++...|.+|-++
T Consensus 145 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~v~~~~~~~~tl~~~I~rLRkK 194 (220)
T 1p2f_A 145 HLPKKEFEILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKA 194 (220)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 28999999999998489967868996556506888865799999999997
No 485
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, DNA-binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395}
Probab=33.13 E-value=21 Score=14.96 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=28.1
Q ss_pred HHHHHHHHC--CCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999999708--8999889999865890114589999
Q T0617 44 RIISVLSSA--SDCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 44 ~iL~~l~~~--~~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
.+..+|..+ .+++..++|+.+++++++.++..+.
T Consensus 173 ~i~~~I~~~~~~~~sl~~lA~~~~~S~~~l~r~fK~ 208 (276)
T 3gbg_A 173 KISCLVKSDITRNWRWADICGELRTNRMILKKELES 208 (276)
T ss_dssp HHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999857389999999999979799999999999
No 486
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Enterococcus faecalis V583} SCOP: a.4.1.9 a.121.1.1
Probab=33.10 E-value=21 Score=14.95 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=26.4
Q ss_pred CCCHHHHH--HHHHHHHC-C--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 89998999--99999708-8--999889999865890114589
Q T0617 37 GIGMTEWR--IISVLSSA-S--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 37 glt~~q~~--iL~~l~~~-~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
.+|..++. .+..+.++ | +.|+.+||+.+|++++++.+.
T Consensus 4 ~ltr~~Il~AA~~lf~e~~G~~~~T~~~IA~~aGvs~~tlY~~ 46 (220)
T 1z0x_A 4 KLSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWY 46 (220)
T ss_dssp CCSHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 3459999999999998818942057999999979689899999
No 487
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, transcription regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=33.05 E-value=21 Score=14.95 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=37.7
Q ss_pred HHHHHCC---CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9998728---9998999999997088999889999865890114589999998
Q T0617 31 AYTQKFG---IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 31 ~~~~~~g---lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
.+.+..| |+.....+...=-++|..+..||++.+.+++|+|..-++++.+
T Consensus 234 ~i~~~~gl~~Lp~~L~~~a~lRl~nPdaSL~ELg~~~~isKSgvnhRlrKi~~ 286 (295)
T 3hyi_A 234 LIKENMGLENLPEDLRRVALVRLRNKELSLRELGKKLNLTKSQIYSKLKRIIK 286 (295)
T ss_dssp HHHHHTCGGGSCHHHHHHHHHHHHCTTSCHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99983685439999999999999697778999955679798999799999999
No 488
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=32.64 E-value=22 Score=14.90 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=10.4
Q ss_pred CCCHHHHHHHHCCCCCHHH
Q ss_conf 9998899998658901145
Q T0617 54 DCSVQKISDILGLDKAAVS 72 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs 72 (148)
+.|+.+||+..|++++++-
T Consensus 50 ~~s~~~IA~~agVs~~t~Y 68 (230)
T 2iai_A 50 GTSMEHLSKAAGISKSSIY 68 (230)
T ss_dssp TCCHHHHHHHHTSCHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHH
T ss_conf 3719999998582831253
No 489
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=32.58 E-value=22 Score=14.90 Aligned_cols=44 Identities=7% Similarity=0.187 Sum_probs=35.9
Q ss_pred HHHHHH-HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 999997-08899988999986589011458999999841321256
Q T0617 45 IISVLS-SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 45 iL~~l~-~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
+|..|. ...|+|..|+|..++.+--.....+..|-..|-++++.
T Consensus 8 LLallaSvrQGMTaGEVAAhf~w~L~~ar~aLEqLfs~G~LRKRs 52 (68)
T 3i71_A 8 LLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRS 52 (68)
T ss_dssp HHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCC
T ss_conf 999999998345199999997786899999999998654044204
No 490
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=32.54 E-value=14 Score=16.12 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=20.3
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9997088--999889999865890114589
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..+.++| +.|+.+|++..|++++++.+.
T Consensus 41 ~lf~~~G~~~~Tv~~Ia~~aGvs~~tlY~~ 70 (226)
T 2pz9_A 41 EEFARHGIAGARVDRIAKQARTSKERVYAY 70 (226)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999985935288999999969487479788
No 491
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=31.71 E-value=13 Score=16.35 Aligned_cols=11 Identities=27% Similarity=0.072 Sum_probs=3.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q T0617 131 KDQLFILLKKL 141 (148)
Q Consensus 131 ~~~l~~~L~~l 141 (148)
...+...+..+
T Consensus 172 ~~~~~~~i~~l 182 (189)
T 3geu_A 172 KSQFKDEVYSL 182 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 492
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=31.39 E-value=7.7 Score=17.88 Aligned_cols=27 Identities=7% Similarity=0.295 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999889999865890114589999998
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
|.+..|+|+.++++.-.+.+..+.+.+
T Consensus 186 prtl~eia~~~~i~~k~l~r~~k~~~~ 212 (345)
T 3k7a_M 186 ARTFKEIQSLIHVKTKEFGKTLNIMKN 212 (345)
T ss_dssp SCCHHHHHHSSSCCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 977999998869889999999999999
No 493
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa}
Probab=31.04 E-value=18 Score=15.46 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=6.9
Q ss_pred CCHHHHHHHHCCCCCHH
Q ss_conf 99889999865890114
Q T0617 55 CSVQKISDILGLDKAAV 71 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~v 71 (148)
+|+.+||+..|++++++
T Consensus 35 ~si~~Ia~~agvs~~t~ 51 (215)
T 3e7q_A 35 ASVRKICAEAGVSVGLI 51 (215)
T ss_dssp CCHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
T ss_conf 77999999979488889
No 494
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=30.96 E-value=15 Score=16.00 Aligned_cols=29 Identities=10% Similarity=0.349 Sum_probs=19.6
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 99997088--999889999865890114589
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
+..+.++| +.|+.+||+..|++++++.+.
T Consensus 14 ~~lf~e~G~~~~s~~~IA~~aGvs~~tlY~~ 44 (207)
T 2vpr_A 14 LILLNEVGIEGLTTRKLAQKIGVEQPTLYWH 44 (207)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCHHHHTTT
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999971955288999999968687789998
No 495
>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Shigella flexneri}
Probab=30.87 E-value=21 Score=14.92 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHHH---------HHHHHHHHCCCHHHH
Q ss_conf 0017888999999999999---------999999857999899
Q T0617 98 INLTEMGQELYEVASDFAI---------EREKQLLEEFEEAEK 131 (148)
Q Consensus 98 l~LT~~G~~~~~~~~~~~~---------~~~~~~~~~l~~ee~ 131 (148)
+.||+||+++|+++..... ......|..|++.+.
T Consensus 296 ~ALTpkGR~LYD~ll~~a~~~~~~~~~~~~l~~~f~~fPd~~~ 338 (455)
T 2rjb_A 296 VALTPKGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFPDSEF 338 (455)
T ss_dssp BCBCHHHHHHHHHHHTTC--------CHHHHHHHGGGSCCSHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 2038547999999998631377706799999999987899999
No 496
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA- binding domain, transcription; 1.90A {Enterococcus faecalis V583}
Probab=30.62 E-value=23 Score=14.69 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=33.1
Q ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHC-----CCCCHHHHHHHHHHHH
Q ss_conf 72899989999999970889--99889999865-----8901145899999984
Q T0617 35 KFGIGMTEWRIISVLSSASD--CSVQKISDILG-----LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~--~t~~eLa~~l~-----i~~~~vs~~i~~L~~~ 81 (148)
...||..++.+|..+..+++ ++-.+|.+.+- .+..++...|.+|-++
T Consensus 41 ~i~Lt~~E~~lL~~L~~~~~~vvsr~~L~~~vw~~~~~~~~~sl~~~I~rLRkk 94 (121)
T 2hwv_A 41 KIELTHREFELLYYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREK 94 (121)
T ss_dssp EEECCHHHHHHHHHHHHTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCCCEEEHHHHHHHHH
T ss_conf 997799999999999867995497999999973865546775764789999998
No 497
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=30.57 E-value=17 Score=15.56 Aligned_cols=17 Identities=6% Similarity=0.188 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 11458999999841321
Q T0617 69 AAVSRTVKKLEEKKYIE 85 (148)
Q Consensus 69 ~~vs~~i~~L~~~gli~ 85 (148)
..+...+......|.+.
T Consensus 127 ~~~~~~l~~~~~~g~~~ 143 (208)
T 2g3b_A 127 SEIADAIVQAQATGEIS 143 (208)
T ss_dssp HHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 99999999999859999
No 498
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, protein-DNA complex, , DNA binding protein/DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=28.56 E-value=25 Score=14.46 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=0.0
Q ss_pred CHHHHHHHHCCCCCHHHHHHH
Q ss_conf 988999986589011458999
Q T0617 56 SVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 56 t~~eLa~~l~i~~~~vs~~i~ 76 (148)
++.++|+.+++++++|+++++
T Consensus 137 S~~eaa~~~gvs~~~Is~~~~ 157 (174)
T 1u3e_M 137 STKCACEELGLTRGKVTDVLK 157 (174)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHC
T ss_conf 999999997989889999976
No 499
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis H37RV}
Probab=28.48 E-value=25 Score=14.45 Aligned_cols=44 Identities=27% Similarity=0.295 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHCCC--CCHHHHHHHH-----CCCCCHHHHHHHHHHHH
Q ss_conf 99989999999970889--9988999986-----58901145899999984
Q T0617 38 IGMTEWRIISVLSSASD--CSVQKISDIL-----GLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~--~t~~eLa~~l-----~i~~~~vs~~i~~L~~~ 81 (148)
||..+|.+|..+..+++ ++-.+|.+.+ ..+..++...|.+|-++
T Consensus 35 Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkk 85 (110)
T 2pmu_A 35 LSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRK 85 (110)
T ss_dssp CCHHHHHHHHHHHHTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 589999999999977997637999997503777788868999999999998
No 500
>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406}
Probab=28.42 E-value=19 Score=15.31 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHCC--CCCHHHHHHHHCCCCCHH
Q ss_conf 9999997088--999889999865890114
Q T0617 44 RIISVLSSAS--DCSVQKISDILGLDKAAV 71 (148)
Q Consensus 44 ~iL~~l~~~~--~~t~~eLa~~l~i~~~~v 71 (148)
..+..+.+.| +.|..+||+..|++++++
T Consensus 19 aa~~lf~~~G~~~~t~~~Ia~~agvs~~~i 48 (204)
T 3eup_A 19 STAPVFNVKGLAGTSLTDLTEATNLTKGSI 48 (204)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHH
T ss_conf 999999973946288999999979099999
Done!