Query T0617 3NRV, Acinetobacter sp. ADP1, 148 residues
Match_columns 148
No_of_seqs 131 out of 6702
Neff 8.8
Searched_HMMs 15564
Date Mon Jul 5 09:08:35 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0617.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0617.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3deua1 a.4.5.28 (A:2-141) Tra 99.9 4.2E-23 2.7E-27 171.8 13.9 139 9-148 1-140 (140)
2 d2fbha1 a.4.5.28 (A:8-144) Tra 99.9 1.5E-22 9.3E-27 168.2 14.6 135 12-147 1-136 (137)
3 d2bv6a1 a.4.5.28 (A:5-140) Tra 99.9 1.1E-22 7.4E-27 168.9 12.8 135 7-143 1-135 (136)
4 d2fbka1 a.4.5.28 (A:8-179) Tra 99.9 7.4E-22 4.8E-26 163.5 14.7 134 13-147 36-172 (172)
5 d1s3ja_ a.4.5.28 (A:) Putative 99.9 1.6E-21 1E-25 161.3 15.6 135 12-147 8-142 (143)
6 d1lj9a_ a.4.5.28 (A:) Transcri 99.9 1.1E-21 7E-26 162.4 14.4 134 13-147 3-136 (144)
7 d1z91a1 a.4.5.28 (A:8-144) Org 99.9 1.6E-22 1E-26 168.0 7.9 137 7-146 1-137 (137)
8 d1lnwa_ a.4.5.28 (A:) MexR rep 99.9 6.4E-21 4.1E-25 157.3 15.7 132 12-143 7-139 (141)
9 d3broa1 a.4.5.28 (A:3-137) Tra 99.9 5.7E-21 3.7E-25 157.6 14.5 132 12-144 2-135 (135)
10 d2a61a1 a.4.5.28 (A:5-143) Tra 99.9 5.6E-21 3.6E-25 157.6 14.0 131 16-147 7-137 (139)
11 d2fbia1 a.4.5.28 (A:5-140) Pro 99.9 3.5E-21 2.3E-25 159.0 11.4 131 12-143 3-133 (136)
12 d2etha1 a.4.5.28 (A:1-140) Put 99.8 7.9E-21 5E-25 156.7 11.1 131 16-147 9-139 (140)
13 d1jgsa_ a.4.5.28 (A:) Multiple 99.8 2.1E-20 1.3E-24 153.9 12.2 128 13-141 8-136 (138)
14 d2hr3a1 a.4.5.28 (A:2-146) Pro 99.8 2E-18 1.3E-22 140.6 12.6 135 8-143 3-139 (145)
15 d2fxaa1 a.4.5.28 (A:6-167) Pro 99.8 1.7E-18 1.1E-22 141.1 9.4 124 7-130 3-131 (162)
16 d2frha1 a.4.5.28 (A:102-216) P 99.7 4.8E-16 3.1E-20 124.8 11.0 111 3-118 1-113 (115)
17 d1p4xa2 a.4.5.28 (A:126-250) S 99.6 1.1E-15 7.2E-20 122.3 11.3 94 26-119 19-114 (125)
18 d1p4xa1 a.4.5.28 (A:1-125) Sta 99.6 9.3E-16 6E-20 122.9 10.0 100 23-122 17-118 (125)
19 d1hsja1 a.4.5.28 (A:373-487) S 99.6 3.7E-16 2.4E-20 125.6 6.5 99 18-117 11-111 (115)
20 d1ku9a_ a.4.5.36 (A:) DNA-bind 99.5 1E-13 6.7E-18 109.2 13.3 127 17-144 4-136 (151)
21 d1ub9a_ a.4.5.28 (A:) Hypothet 99.4 5E-13 3.2E-17 104.7 5.9 82 39-120 15-96 (100)
22 d2d1ha1 a.4.5.50 (A:1-109) Hyp 99.3 1.1E-12 7.1E-17 102.4 5.7 93 30-122 11-104 (109)
23 d1sfxa_ a.4.5.50 (A:) Hypothet 99.3 1.3E-11 8.3E-16 95.3 9.5 100 27-128 8-107 (109)
24 d3ctaa1 a.4.5.28 (A:5-89) Ta10 99.1 6.7E-11 4.3E-15 90.5 6.5 74 42-118 3-82 (85)
25 d1okra_ a.4.5.39 (A:) Methicil 99.1 2.5E-11 1.6E-15 93.4 3.6 105 34-140 1-119 (120)
26 d1sd4a_ a.4.5.39 (A:) Penicill 98.5 4E-07 2.5E-11 65.4 9.3 104 36-142 2-120 (122)
27 d2g9wa1 a.4.5.39 (A:3-124) Hyp 98.5 6.2E-07 4E-11 64.1 10.2 103 37-142 4-121 (122)
28 d1z7ua1 a.4.5.69 (A:1-108) Hyp 98.0 9.4E-06 6E-10 56.2 7.1 79 43-123 22-101 (108)
29 d1ulya_ a.4.5.58 (A:) Hypothet 97.9 3E-05 2E-09 52.8 8.5 64 39-103 18-83 (190)
30 d1yyva1 a.4.5.69 (A:9-122) Put 97.9 1.2E-05 7.5E-10 55.6 5.7 78 41-120 23-103 (114)
31 d2hzta1 a.4.5.69 (A:4-98) Puta 97.9 8.4E-06 5.4E-10 56.5 5.0 76 43-120 14-90 (95)
32 d2fswa1 a.4.5.69 (A:3-104) Hyp 97.9 1E-05 6.6E-10 56.0 5.1 71 43-114 23-94 (102)
33 d2esha1 a.4.5.61 (A:4-117) Hyp 97.8 6.2E-05 4E-09 50.8 8.7 80 40-120 10-99 (114)
34 d2f2ea1 a.4.5.69 (A:5-146) Hyp 97.8 2.7E-05 1.7E-09 53.2 6.7 78 43-123 23-100 (142)
35 d1xmaa_ a.4.5.61 (A:) Predicte 97.8 4.3E-05 2.7E-09 51.8 7.1 79 41-120 8-96 (103)
36 d1u2wa1 a.4.5.5 (A:12-119) Cad 97.8 2.3E-05 1.5E-09 53.6 5.7 69 33-105 25-93 (108)
37 d1r1ta_ a.4.5.5 (A:) SmtB repr 97.7 9.1E-05 5.8E-09 49.7 7.9 67 33-104 17-83 (98)
38 d1mkma1 a.4.5.33 (A:1-75) Tran 97.7 5.7E-05 3.7E-09 51.0 6.6 65 42-112 7-72 (75)
39 d1p6ra_ a.4.5.39 (A:) Penicill 97.7 2.5E-05 1.6E-09 53.3 4.8 61 37-100 6-70 (82)
40 d1jhfa1 a.4.5.2 (A:2-72) LexA 97.7 3.8E-05 2.4E-09 52.2 5.5 59 37-97 2-66 (71)
41 d2p4wa1 a.4.5.64 (A:1-194) Tra 97.6 3.4E-05 2.2E-09 52.5 4.5 65 39-104 14-80 (194)
42 d1r1ua_ a.4.5.5 (A:) Metal-sen 97.6 0.00016 1E-08 48.0 7.7 67 33-104 12-78 (94)
43 d1z05a1 a.4.5.63 (A:10-80) Tra 97.6 3.2E-05 2.1E-09 52.7 3.9 49 41-89 7-55 (71)
44 d2isya1 a.4.5.24 (A:2-64) Iron 97.5 7E-05 4.5E-09 50.4 5.4 53 38-90 3-59 (63)
45 d1yg2a_ a.4.5.61 (A:) Hypothet 97.5 0.00019 1.2E-08 47.5 7.1 93 42-135 3-114 (178)
46 d2ev0a1 a.4.5.24 (A:2-62) Mang 97.5 6E-05 3.9E-09 50.9 4.2 41 50-90 17-57 (61)
47 d1z6ra1 a.4.5.63 (A:12-81) Mlc 97.4 0.00011 6.9E-09 49.2 5.3 48 41-88 6-53 (70)
48 d1r7ja_ a.4.5.49 (A:) Sso10a ( 97.4 0.00059 3.8E-08 44.3 8.4 61 44-113 10-70 (90)
49 d1ixca1 a.4.5.37 (A:1-89) LysR 97.3 0.001 6.6E-08 42.7 8.8 77 38-120 1-77 (89)
50 d2esna1 a.4.5.37 (A:3-91) Prob 97.2 0.00074 4.7E-08 43.6 6.9 84 37-127 5-88 (89)
51 d2cfxa1 a.4.5.32 (A:1-63) Tran 97.1 0.00046 2.9E-08 45.0 5.7 51 38-88 3-53 (63)
52 d1stza1 a.4.5.51 (A:14-100) He 97.1 0.0011 7.3E-08 42.3 7.4 68 38-110 2-76 (87)
53 d2cyya1 a.4.5.32 (A:5-64) Puta 97.0 0.00085 5.4E-08 43.2 5.9 52 38-89 1-52 (60)
54 d1b9ma1 a.4.5.8 (A:-1-126) N-t 97.0 0.002 1.3E-07 40.7 7.9 79 38-120 18-99 (127)
55 d1i1ga1 a.4.5.32 (A:2-61) LprA 97.0 0.0008 5.2E-08 43.3 5.7 51 39-89 2-52 (60)
56 d2hoea1 a.4.5.63 (A:10-71) N-a 97.0 0.00031 2E-08 46.1 3.5 47 45-92 4-50 (62)
57 d2cg4a1 a.4.5.32 (A:4-66) Regu 96.9 0.001 6.5E-08 42.7 5.8 52 37-88 2-53 (63)
58 d1biaa1 a.4.5.1 (A:1-63) Bioti 96.9 0.00092 5.9E-08 43.0 5.3 46 39-84 4-49 (63)
59 d1biaa1 a.4.5.1 (A:1-63) Bioti 96.8 0.0013 8.6E-08 41.9 5.4 48 38-85 3-50 (63)
60 d1xd7a_ a.4.5.55 (A:) Hypothet 96.7 0.0018 1.1E-07 41.1 5.5 64 42-108 6-69 (127)
61 d2bgca1 a.4.5.4 (A:138-237) Li 96.2 0.0061 3.9E-07 37.5 5.9 34 53-86 30-64 (100)
62 d2gaua1 a.4.5.4 (A:152-232) Tr 95.8 0.0083 5.3E-07 36.6 5.0 34 53-86 28-61 (81)
63 d1i5za1 a.4.5.4 (A:138-206) Ca 95.6 0.0037 2.4E-07 38.9 2.8 34 54-87 29-62 (69)
64 d1zara1 a.4.5.56 (A:2-90) Rio2 95.5 0.02 1.3E-06 34.1 6.2 70 37-110 8-81 (89)
65 d1ft9a1 a.4.5.4 (A:134-213) CO 95.5 0.0059 3.8E-07 37.6 3.5 34 54-87 30-63 (80)
66 d1zyba1 a.4.5.4 (A:148-220) Pr 95.5 0.0049 3.1E-07 38.1 2.9 33 54-86 27-59 (73)
67 d1ylfa1 a.4.5.55 (A:5-142) Hyp 95.4 0.012 7.8E-07 35.5 4.7 64 42-108 9-74 (138)
68 d3e5ua1 a.4.5.4 (A:148-227) Ch 95.3 0.0071 4.6E-07 37.0 3.3 33 54-86 30-62 (80)
69 d1j5ya1 a.4.5.1 (A:3-67) Putat 95.0 0.02 1.3E-06 34.0 4.9 46 41-86 8-55 (65)
70 d2obpa1 a.4.5.71 (A:12-92) Put 95.0 0.03 2E-06 32.8 5.8 74 37-112 1-80 (81)
71 d1dpua_ a.4.5.16 (A:) C-termin 94.9 0.021 1.3E-06 33.9 4.8 56 37-92 3-62 (69)
72 d2zcwa1 a.4.5.4 (A:118-199) Tr 94.9 0.009 5.8E-07 36.4 2.8 33 54-86 29-61 (82)
73 d2dk5a1 a.4.5.85 (A:8-85) DNA- 94.8 0.012 7.5E-07 35.6 3.3 64 37-100 10-75 (78)
74 d2p8ta1 a.4.5.72 (A:14-82) Hyp 94.5 0.069 4.4E-06 30.5 6.6 62 44-112 6-68 (69)
75 d1mzba_ a.4.5.42 (A:) Ferric u 94.5 0.11 7E-06 29.1 7.6 61 33-93 7-76 (134)
76 d2v7fa1 a.4.5.84 (A:2-150) Rib 94.3 0.075 4.8E-06 30.2 6.5 69 44-118 56-138 (149)
77 d1xmka1 a.4.5.19 (A:294-366) Z 94.2 0.016 1.1E-06 34.6 3.0 65 38-106 3-68 (73)
78 d1t6sa2 a.4.5.60 (A:86-162) Se 94.1 0.023 1.5E-06 33.7 3.5 68 38-108 7-75 (77)
79 d1yioa1 a.4.6.2 (A:131-200) Re 94.0 0.12 7.7E-06 28.9 6.9 43 37-81 12-54 (70)
80 d2htja1 a.4.5.73 (A:1-73) P fi 93.7 0.053 3.4E-06 31.2 4.8 51 43-93 3-53 (73)
81 d1a04a1 a.4.6.2 (A:150-216) Ni 93.7 0.079 5.1E-06 30.1 5.6 43 37-81 6-48 (67)
82 d1hw1a1 a.4.5.6 (A:5-78) Fatty 93.6 0.027 1.7E-06 33.2 3.1 36 55-90 27-63 (74)
83 d2o3fa1 a.4.1.20 (A:1-83) Puta 93.3 0.068 4.3E-06 30.5 4.7 51 37-87 15-69 (83)
84 d1qzza1 a.4.5.29 (A:10-101) Ac 93.3 0.047 3E-06 31.6 3.9 58 45-107 32-89 (92)
85 d3bwga1 a.4.5.6 (A:5-82) Trans 93.2 0.034 2.2E-06 32.5 3.1 37 54-90 21-58 (78)
86 d1bjaa_ a.4.5.9 (A:) Transcrip 93.0 0.25 1.6E-05 26.7 7.2 75 36-117 12-87 (95)
87 d2hs5a1 a.4.5.6 (A:25-93) Puta 92.6 0.04 2.5E-06 32.1 2.7 37 54-90 25-61 (69)
88 d1fsea_ a.4.6.2 (A:) Germinati 92.5 0.15 9.8E-06 28.2 5.6 43 37-81 4-46 (67)
89 d1sfua_ a.4.5.19 (A:) 34L {Yab 92.2 0.032 2E-06 32.7 1.8 44 47-90 17-60 (70)
90 d1l3la1 a.4.6.2 (A:170-234) Qu 92.1 0.18 1.2E-05 27.6 5.6 44 36-81 3-46 (65)
91 d1tw3a1 a.4.5.29 (A:14-98) Car 91.9 0.051 3.3E-06 31.4 2.6 57 45-108 26-82 (85)
92 d1ldja3 e.40.1.1 (A:411-686) C 91.7 0.093 6E-06 29.6 3.8 57 37-93 192-248 (276)
93 d1wi9a_ a.4.5.47 (A:) Hypothet 91.5 0.082 5.3E-06 30.0 3.3 59 44-105 11-69 (72)
94 d1ldja3 e.40.1.1 (A:411-686) C 91.5 0.093 6E-06 29.6 3.6 56 37-92 192-247 (276)
95 d1p4wa_ a.4.6.2 (A:) Transcrip 90.7 0.34 2.2E-05 25.8 5.8 43 37-81 22-64 (87)
96 d1hlva1 a.4.1.7 (A:1-66) DNA-b 90.5 0.16 1E-05 28.1 4.0 43 37-79 7-50 (66)
97 d1gkub3 e.10.1.1 (B:499-1054) 90.4 0.19 1.2E-05 27.5 4.4 51 56-113 459-513 (556)
98 d1s7oa_ a.4.13.3 (A:) Hypothet 90.4 0.36 2.3E-05 25.7 5.8 42 38-80 17-58 (106)
99 d1pdnc_ a.4.1.5 (C:) Paired pr 90.4 0.36 2.3E-05 25.7 5.7 70 38-111 17-86 (123)
100 d3bz6a2 a.4.5.75 (A:97-180) Hy 89.7 0.47 3E-05 24.9 5.8 63 33-95 2-69 (84)
101 d1in4a1 a.4.5.11 (A:255-329) H 89.7 0.5 3.2E-05 24.7 6.0 65 37-108 2-70 (75)
102 d1mw9x_ e.10.1.1 (X:) DNA topo 89.6 0.34 2.2E-05 25.9 5.1 52 55-113 476-531 (591)
103 d1fp2a1 a.4.5.29 (A:8-108) Iso 89.5 0.25 1.6E-05 26.8 4.3 62 43-108 32-97 (101)
104 d1ijwc_ a.4.1.2 (C:) HIN recom 89.1 0.25 1.6E-05 26.7 4.1 38 37-75 5-42 (47)
105 d1xsva_ a.4.13.3 (A:) Hypothet 89.0 0.66 4.2E-05 23.9 6.2 41 38-79 19-59 (106)
106 d1v4ra1 a.4.5.6 (A:1-100) Tran 88.9 0.045 2.9E-06 31.7 0.1 35 56-90 35-69 (100)
107 d1r71a_ a.4.14.1 (A:) Transcri 88.2 0.85 5.4E-05 23.2 6.3 49 35-84 11-60 (114)
108 d2pg4a1 a.4.5.48 (A:1-92) Unch 88.1 0.93 6E-05 22.9 7.1 62 51-114 25-88 (92)
109 d1tbxa_ a.4.5.48 (A:) Hypothet 88.0 0.94 6E-05 22.9 7.7 73 40-115 6-82 (94)
110 d1rp3a2 a.4.13.2 (A:164-234) S 88.0 0.94 6E-05 22.9 7.3 43 37-80 21-63 (71)
111 d1kyza1 a.4.5.29 (A:13-119) Ca 88.0 0.41 2.7E-05 25.3 4.6 67 42-108 29-104 (107)
112 d2b0la1 a.4.5.66 (A:167-257) G 87.7 0.27 1.7E-05 26.5 3.5 55 37-91 12-71 (91)
113 d1ku3a_ a.4.13.2 (A:) Sigma70 87.0 1 6.4E-05 22.7 6.1 45 37-81 8-55 (61)
114 d1i7da_ e.10.1.1 (A:) DNA topo 86.9 0.32 2E-05 26.0 3.5 43 65-114 521-564 (620)
115 d2ve8a1 a.4.5.67 (A:745-811) D 85.5 0.68 4.4E-05 23.8 4.6 54 45-99 9-62 (67)
116 d1fp1d1 a.4.5.29 (D:19-128) Ch 85.3 0.27 1.7E-05 26.5 2.5 67 42-108 28-106 (110)
117 d1k78a1 a.4.1.5 (A:19-81) Pax- 85.3 0.7 4.5E-05 23.8 4.6 33 53-85 29-61 (63)
118 d1jhga_ a.4.12.1 (A:) Trp repr 84.9 1.4 8.7E-05 21.8 6.3 78 1-80 1-84 (101)
119 d1jhga_ a.4.12.1 (A:) Trp repr 84.8 1.4 8.8E-05 21.8 6.2 77 1-80 1-84 (101)
120 d1uxda_ a.35.1.5 (A:) Fructose 84.5 0.37 2.4E-05 25.6 2.9 23 55-77 1-23 (59)
121 d2icta1 a.35.1.3 (A:8-94) Anti 84.5 0.39 2.5E-05 25.4 3.0 31 46-76 6-36 (87)
122 d1lvaa3 a.4.5.35 (A:511-574) C 83.9 0.61 3.9E-05 24.1 3.8 37 53-89 22-58 (64)
123 d1or7a1 a.4.13.2 (A:120-187) S 83.8 0.96 6.2E-05 22.9 4.8 41 38-79 19-59 (68)
124 d1ixsb1 a.4.5.11 (B:243-318) H 83.6 0.82 5.3E-05 23.3 4.4 66 36-108 1-70 (76)
125 d2a6ca1 a.35.1.13 (A:1-69) HTH 83.6 0.72 4.6E-05 23.7 4.1 33 44-76 9-41 (69)
126 d2o38a1 a.35.1.13 (A:28-116) H 82.8 0.57 3.7E-05 24.4 3.3 33 44-76 14-46 (89)
127 d1u5ta2 a.4.5.54 (A:165-232) V 82.7 0.69 4.4E-05 23.8 3.6 50 38-87 1-50 (68)
128 d2gxba1 a.4.5.19 (A:140-198) Z 82.5 1 6.4E-05 22.7 4.4 46 44-89 3-51 (59)
129 d2j5pa1 a.4.5.67 (A:1261-1329) 81.5 0.9 5.8E-05 23.0 3.9 54 44-98 11-64 (69)
130 d1utxa_ a.35.1.3 (A:) Putative 81.5 0.55 3.5E-05 24.5 2.8 29 47-75 7-35 (66)
131 d1r71a_ a.4.14.1 (A:) Transcri 81.1 1.9 0.00012 20.9 5.4 43 36-79 12-55 (114)
132 d1ttya_ a.4.13.2 (A:) Sigma70 80.9 1.9 0.00012 20.8 6.0 44 37-80 18-64 (87)
133 d1efaa1 a.35.1.5 (A:2-60) Lac 80.4 0.41 2.6E-05 25.3 1.8 24 54-77 2-25 (59)
134 d2ppxa1 a.35.1.3 (A:30-91) Unc 80.3 0.68 4.4E-05 23.8 2.9 28 47-74 5-32 (62)
135 d1qpza1 a.35.1.5 (A:2-58) Puri 80.0 0.58 3.8E-05 24.3 2.5 22 56-77 2-23 (57)
136 d2hsga1 a.35.1.5 (A:2-58) Gluc 79.7 0.47 3E-05 24.9 2.0 23 55-77 2-24 (57)
137 d2co5a1 a.4.5.48 (A:5-93) STIV 79.7 1.7 0.00011 21.1 4.9 76 41-119 6-88 (89)
138 d2croa_ a.35.1.2 (A:) cro 434 79.5 0.7 4.5E-05 23.8 2.8 31 46-76 8-38 (65)
139 d1i7da_ e.10.1.1 (A:) DNA topo 79.1 1.1 7.1E-05 22.5 3.7 42 65-113 521-563 (620)
140 d2axla1 a.4.5.43 (A:1-144) Wer 79.0 0.96 6.2E-05 22.9 3.4 46 65-111 61-106 (144)
141 d1b0na2 a.35.1.3 (A:1-68) SinR 78.6 0.76 4.9E-05 23.5 2.8 31 46-76 6-36 (68)
142 d1lmb3_ a.35.1.2 (3:) lambda C 76.9 1.5 9.4E-05 21.6 3.8 25 50-74 21-45 (87)
143 d1q1ha_ a.4.5.41 (A:) Transcri 76.5 2.2 0.00014 20.5 4.6 56 41-96 19-77 (88)
144 d1y7ya1 a.35.1.3 (A:5-73) Rest 75.8 1.1 7.1E-05 22.5 2.9 31 45-75 13-43 (69)
145 d1gdta1 a.4.1.2 (A:141-183) ga 75.8 0.89 5.7E-05 23.1 2.4 29 48-77 13-41 (43)
146 d2jn6a1 a.4.1.19 (A:1-89) Unch 75.7 1.5 9.9E-05 21.5 3.7 33 50-82 19-51 (89)
147 d1y9qa1 a.35.1.8 (A:4-82) Prob 75.2 1.1 7.1E-05 22.4 2.8 31 46-76 13-43 (79)
148 d1bl0a1 a.4.1.8 (A:9-62) MarA 75.1 1.8 0.00011 21.1 3.8 39 44-82 7-47 (54)
149 d2p7vb1 a.4.13.2 (B:546-613) S 74.7 2.9 0.00018 19.7 5.9 44 37-80 5-51 (68)
150 d2hyec3 e.40.1.1 (C:403-675) C 74.6 0.56 3.6E-05 24.4 1.2 45 38-82 189-233 (273)
151 d2b5aa1 a.35.1.3 (A:1-77) Regu 74.6 1.1 7.3E-05 22.3 2.8 31 46-76 15-45 (77)
152 d1r69a_ a.35.1.2 (A:) 434 C1 r 74.3 1.2 7.6E-05 22.2 2.8 30 46-75 6-35 (63)
153 d1lvaa4 a.4.5.35 (A:575-634) C 74.2 2.7 0.00017 19.9 4.6 50 44-96 8-57 (60)
154 d1x57a1 a.35.1.12 (A:8-85) End 73.7 2.2 0.00014 20.4 4.1 32 44-75 9-40 (78)
155 d2auwa1 a.35.1.10 (A:88-154) H 73.4 1.3 8.3E-05 22.0 2.8 29 46-74 6-34 (67)
156 d1olta_ c.1.28.2 (A:) Oxygen-i 72.3 0.75 4.8E-05 23.6 1.4 72 36-114 358-436 (441)
157 d1oywa1 a.4.5.43 (A:407-516) D 72.3 1.2 7.8E-05 22.2 2.5 42 65-110 57-98 (110)
158 d2r1jl1 a.35.1.2 (L:3-68) P22 69.9 1.3 8.5E-05 21.9 2.2 31 46-76 8-38 (66)
159 d2ofya1 a.35.1.3 (A:3-84) Puta 69.2 3.3 0.00021 19.3 4.1 23 53-75 24-46 (82)
160 d1d5ya1 a.4.1.8 (A:3-56) Rob t 69.1 2 0.00013 20.8 2.9 38 45-82 8-47 (54)
161 d2g7ga1 a.4.1.9 (A:9-73) Putat 67.2 2 0.00013 20.8 2.6 32 45-76 10-41 (65)
162 d2cuja1 a.4.1.18 (A:8-108) Tra 66.5 4.3 0.00028 18.5 7.3 59 28-86 37-100 (101)
163 d1xn7a_ a.4.5.62 (A:) Hypothet 66.1 3.9 0.00025 18.8 4.0 47 47-93 9-55 (78)
164 d1zk8a1 a.4.1.9 (A:6-77) Trans 65.7 3.2 0.00021 19.3 3.5 39 37-75 2-44 (72)
165 d2fnaa1 a.4.5.11 (A:284-356) H 65.6 4.5 0.00029 18.4 4.9 41 45-87 11-57 (73)
166 d1xs9a_ i.11.1.1 (A:) Ternary 65.5 4.5 0.00029 18.4 6.1 53 27-79 43-102 (129)
167 d1ufma_ a.4.5.47 (A:) COP9 sig 61.5 4 0.00026 18.7 3.3 51 43-93 19-69 (84)
168 d1vz0a1 a.4.14.1 (A:116-208) P 58.7 5.9 0.00038 17.6 3.8 35 43-78 9-43 (93)
169 d1umqa_ a.4.1.12 (A:) Photosyn 56.6 6.4 0.00041 17.3 3.7 34 43-77 23-56 (60)
170 d1v7ba1 a.4.1.9 (A:1-74) Trans 55.5 6.7 0.00043 17.2 3.7 31 46-76 14-46 (74)
171 d1t56a1 a.4.1.9 (A:22-94) Ethr 54.5 6.4 0.00041 17.4 3.4 30 47-76 14-45 (73)
172 d2o7ta1 a.4.1.9 (A:1-78) Trans 54.2 6.1 0.00039 17.5 3.2 31 46-76 17-49 (78)
173 d2i10a1 a.4.1.9 (A:10-78) Puta 54.0 5.8 0.00037 17.7 3.1 31 47-77 11-43 (69)
174 d3c07a1 a.4.1.9 (A:15-89) Puta 53.9 7.1 0.00045 17.1 3.5 32 46-77 15-48 (75)
175 d1w5sa1 a.4.5.11 (A:300-409) C 53.6 7.1 0.00046 17.0 4.8 35 67-101 52-88 (110)
176 d2fbqa1 a.4.1.9 (A:2-80) Trans 53.6 6 0.00039 17.5 3.1 31 47-77 15-47 (79)
177 d2iu5a1 a.4.1.9 (A:1-71) Trans 53.5 7.2 0.00046 17.0 3.7 30 47-76 17-48 (71)
178 d1nr3a_ d.236.1.1 (A:) DNA-bin 53.2 1 6.6E-05 22.6 -0.8 67 52-120 3-73 (122)
179 d1b4aa1 a.4.5.3 (A:4-78) Argin 52.5 7.4 0.00048 16.9 4.4 47 41-91 3-54 (75)
180 d2g7sa1 a.4.1.9 (A:3-76) Putat 51.3 5.9 0.00038 17.6 2.8 30 47-76 15-46 (74)
181 d1nr3a_ d.236.1.1 (A:) DNA-bin 50.9 1.2 7.6E-05 22.3 -0.8 67 52-120 3-73 (122)
182 d2fx0a1 a.4.1.9 (A:4-76) Hemol 50.8 7 0.00045 17.1 3.1 32 47-78 15-48 (73)
183 d2gena1 a.4.1.9 (A:6-75) Proba 50.6 7.1 0.00045 17.1 3.1 32 46-77 10-43 (70)
184 d2gfna1 a.4.1.9 (A:4-80) Proba 50.5 6.3 0.0004 17.4 2.8 30 47-76 17-48 (77)
185 d2p5ka1 a.4.5.3 (A:2-64) Argin 50.4 8 0.00051 16.7 4.9 47 41-91 5-56 (63)
186 d2d6ya1 a.4.1.9 (A:7-74) Putat 50.1 7.2 0.00046 17.0 3.1 33 46-78 12-46 (68)
187 d1jt6a1 a.4.1.9 (A:2-72) Multi 49.9 6.8 0.00044 17.2 2.9 30 48-77 13-44 (71)
188 d1sgma1 a.4.1.9 (A:5-77) Putat 49.6 7.7 0.0005 16.8 3.2 28 47-74 13-42 (73)
189 d1fnna1 a.4.5.11 (A:277-388) C 49.4 8.3 0.00053 16.6 5.1 76 37-112 8-103 (112)
190 d1g2ha_ a.4.1.12 (A:) Transcri 48.1 8.5 0.00055 16.5 3.2 39 38-78 18-57 (61)
191 d1rkta1 a.4.1.9 (A:2-82) Hypot 47.7 7.3 0.00047 17.0 2.8 28 48-75 23-52 (81)
192 d2fd5a1 a.4.1.9 (A:1-76) Proba 47.0 9 0.00058 16.4 3.3 28 47-74 18-47 (76)
193 d1gxqa_ a.4.6.1 (A:) PhoB {Esc 46.3 9.2 0.00059 16.3 5.5 47 35-81 28-81 (105)
194 d2oi8a1 a.4.1.9 (A:8-86) Putat 46.0 7.3 0.00047 17.0 2.6 28 47-74 20-49 (79)
195 d1l8qa1 a.4.12.2 (A:290-399) C 45.8 9.4 0.0006 16.2 4.0 37 45-81 49-87 (110)
196 d2hyja1 a.4.1.9 (A:8-82) Putat 45.6 6.5 0.00042 17.3 2.3 29 47-75 16-46 (75)
197 d2id3a1 a.4.1.9 (A:13-80) Puta 45.5 8.2 0.00053 16.6 2.8 31 47-77 17-49 (68)
198 d2fq4a1 a.4.1.9 (A:9-77) Trans 45.2 8.9 0.00057 16.4 2.9 30 47-76 15-46 (69)
199 d2np5a1 a.4.1.9 (A:9-77) Trans 44.9 7.9 0.0005 16.8 2.6 30 46-75 11-42 (69)
200 d2id6a1 a.4.1.9 (A:1-75) Trans 44.9 5.7 0.00037 17.7 1.9 32 46-77 13-46 (75)
201 d1pb6a1 a.4.1.9 (A:14-85) Hypo 44.8 8.6 0.00055 16.5 2.8 25 53-77 23-47 (72)
202 d1ldja1 a.4.5.34 (A:687-776) A 44.5 5.1 0.00033 18.0 1.6 31 60-90 52-82 (90)
203 d1ui5a1 a.4.1.9 (A:5-75) A-fac 44.5 9.8 0.00063 16.1 3.1 31 47-77 16-48 (71)
204 d1s6la1 a.4.5.79 (A:21-80) Alk 43.5 7.4 0.00048 16.9 2.3 51 45-101 7-57 (60)
205 d1vi0a1 a.4.1.9 (A:6-77) Hypot 42.5 9.1 0.00058 16.3 2.6 29 48-76 13-43 (72)
206 d2g7la1 a.4.1.9 (A:16-83) Puta 41.4 9.1 0.00059 16.3 2.5 30 47-76 15-46 (68)
207 d1j1va_ a.4.12.2 (A:) Chromoso 41.4 11 0.0007 15.8 7.3 39 42-80 34-73 (94)
208 d2vkva1 a.4.1.9 (A:6-67) Tetra 40.9 6.9 0.00045 17.1 1.8 31 47-77 10-42 (62)
209 d2hkua1 a.4.1.9 (A:18-87) Puta 40.2 11 0.00073 15.7 2.9 24 54-77 20-43 (70)
210 d1ntca_ a.4.1.12 (A:) DNA-bind 40.1 11 0.00073 15.7 4.3 34 45-79 56-89 (91)
211 d1iuya_ a.4.5.34 (A:) Cullin-3 39.8 4.1 0.00027 18.6 0.5 28 64-91 58-85 (92)
212 d1z0xa1 a.4.1.9 (A:4-71) Trans 39.1 12 0.00076 15.6 3.1 31 45-75 11-44 (68)
213 d2g3ba1 a.4.1.9 (A:2-73) Putat 38.9 7.8 0.0005 16.8 1.8 32 46-77 12-45 (72)
214 d1p2fa1 a.4.6.1 (A:121-217) Re 37.5 13 0.00081 15.4 5.0 47 35-81 23-74 (97)
215 d1cf7a_ a.4.5.17 (A:) Cell cyc 37.5 7.5 0.00048 16.9 1.6 38 52-89 23-61 (67)
216 d1t6sa1 a.4.5.60 (A:1-85) Segr 36.5 13 0.00084 15.3 4.7 38 43-81 12-51 (85)
217 d1ic8a2 a.35.1.1 (A:87-180) He 36.2 13 0.00084 15.3 3.3 39 38-76 22-63 (94)
218 d1j75a_ a.4.5.19 (A:) Dlm-1 {M 34.9 14 0.00088 15.1 3.4 44 42-85 3-47 (57)
219 d2dt5a1 a.4.5.38 (A:4-77) Tran 33.8 14 0.00092 15.0 2.9 37 42-78 11-49 (74)
220 d1kgsa1 a.4.6.1 (A:124-225) Ph 33.2 15 0.00094 15.0 3.8 47 35-81 26-79 (102)
221 d1aisb1 a.74.1.2 (B:1108-1205) 33.1 15 0.00094 15.0 4.7 31 51-81 59-89 (98)
222 d1etxa_ a.4.1.12 (A:) FIS prot 32.8 15 0.00095 14.9 3.8 36 42-78 50-86 (89)
223 d1d1la_ a.35.1.2 (A:) cro lamb 32.4 15 0.00097 14.9 2.6 25 49-76 11-35 (61)
224 d3bz6a1 a.4.5.75 (A:13-96) Hyp 32.0 15 0.00098 14.8 3.6 59 36-97 5-80 (84)
225 d1aisb2 a.74.1.2 (B:1206-1300) 30.5 16 0.001 14.7 4.9 30 52-81 58-87 (95)
226 d1rr7a_ a.4.1.14 (A:) Middle o 30.3 16 0.001 14.7 5.0 34 48-81 60-93 (94)
227 d1t98a1 a.4.5.65 (A:8-118) Chr 29.7 17 0.0011 14.6 3.0 74 37-110 16-106 (111)
228 d2hyec1 a.4.5.34 (C:676-759) C 28.7 17 0.0011 14.5 3.9 29 64-92 50-78 (84)
229 d1ys7a1 a.4.6.1 (A:128-233) Tr 27.9 18 0.0011 14.4 6.0 47 35-81 30-83 (106)
230 d1rzsa_ a.35.1.2 (A:) cro p22 27.8 16 0.001 14.7 1.9 19 56-74 12-30 (61)
231 d1opca_ a.4.6.1 (A:) OmpR {Esc 26.9 19 0.0012 14.3 5.2 47 35-81 22-75 (99)
232 d1nera_ a.35.1.2 (A:) Ner {Bac 24.8 20 0.0013 14.0 2.1 32 43-75 12-43 (74)
233 d1vola2 a.74.1.2 (A:208-316) T 24.4 21 0.0013 14.0 4.1 37 45-81 50-88 (109)
234 d1vola1 a.74.1.2 (A:113-207) T 24.3 21 0.0013 14.0 3.8 30 52-81 60-89 (95)
235 d2np3a1 a.4.1.9 (A:35-99) Puta 24.1 9 0.00058 16.4 0.1 29 47-75 7-37 (65)
236 d1tf5a1 a.162.1.1 (A:227-348) 22.9 22 0.0014 13.8 2.1 24 89-112 24-47 (122)
237 d1r8ea1 a.6.1.3 (A:3-120) Tran 22.4 23 0.0014 13.7 6.1 27 55-85 4-30 (118)
238 d1nd9a_ a.6.1.6 (A:) N-termina 21.6 23 0.0015 13.6 2.4 33 54-92 2-34 (49)
239 d2hgca1 a.4.5.77 (A:5-82) Unch 21.4 24 0.0015 13.6 6.4 64 42-110 3-71 (78)
240 d1kgsa1 a.4.6.1 (A:124-225) Ph 21.1 24 0.0015 13.5 4.0 47 35-81 26-79 (102)
241 d1t33a1 a.4.1.9 (A:1-88) Putat 21.0 24 0.0015 13.5 2.6 22 56-77 33-54 (88)
242 d1aoya_ a.4.5.3 (A:) Arginine 20.9 24 0.0015 13.5 4.4 42 47-92 16-63 (78)
243 d1j9ia_ a.6.1.5 (A:) Terminase 20.6 12 0.00074 15.6 0.1 29 55-87 3-31 (68)
No 1
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=99.90 E-value=4.2e-23 Score=171.79 Aligned_cols=139 Identities=18% Similarity=0.314 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 7764999999999999999999999872899989999999970-889998899998658901145899999984132125
Q T0617 9 IDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 9 le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~-~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
+|..+++.|.++++.+...+.+. .+++|+|.+||.+|..|++ +|++|+++|++.++++++++|++|++|+++|||++.
T Consensus 1 me~~ig~~l~r~~r~~~~~~~~~-l~~~glt~~~~~~L~~l~~~~~~~t~~~la~~l~i~~~~vs~~l~~L~~~glI~~~ 79 (140)
T d3deua1 1 LESPLGSDLARLVRIWRALIDHR-LKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQ 79 (140)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHH-TTTTTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 96589999999999999999998-87769799999999999874999569999999787776788999999708977751
Q ss_pred CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6743223000001788899999999999999999985799989999999999999988309
Q T0617 88 GHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQM 148 (148)
Q Consensus 88 ~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~~ 148 (148)
++|.|+|.+.++||++|++++.++.+....+.+.++++++++|+..|.++|.++.+|+.+|
T Consensus 80 ~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~~~~~L~~i~~nl~~l 140 (140)
T d3deua1 80 TCASDRRAKRIKLTEKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNIMEL 140 (140)
T ss_dssp --------CEEEECGGGHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6678988105688988999999999999999999994899999999999999999989749
No 2
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.89 E-value=1.5e-22 Score=168.22 Aligned_cols=135 Identities=14% Similarity=0.232 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 499999999999999999999987289998999999997088-9998899998658901145899999984132125674
Q T0617 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSAS-DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 12 ~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~-~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
|++++|.++++.+...+.+. .+++|||.+||.+|..|..+| ++++++|++.++++++++|++|++|+++|||++.++|
T Consensus 1 y~g~ll~~~~r~~~~~~~~~-l~~~glt~~q~~iL~~l~~~~~~~t~~~la~~~~~~~~~vs~~v~~L~~~gli~r~~~~ 79 (137)
T d2fbha1 1 YFGTLLAQTSRAWRAELDRR-LSHLGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVA 79 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-TGGGCCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCB
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 97999999999999999999-98859799999999999876999769999999897898999999999985772005777
Q ss_pred CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 322300000178889999999999999999998579998999999999999998830
Q T0617 91 EDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 91 ~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
.|+|.+.+.||++|++++.++.+......+.++++|+++|...|..+|.++..++++
T Consensus 80 ~D~R~~~i~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~ 136 (137)
T d2fbha1 80 EDRRAKHIVLTPKADVLIADIEAIAASVRNDVLTGIDESEQALCQQVLLRILANLEN 136 (137)
T ss_dssp TTBCSCEEEECTTHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 888811120689899999999999999999998689999999999999999998768
No 3
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=99.89 E-value=1.1e-22 Score=168.91 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 56776499999999999999999999987289998999999997088999889999865890114589999998413212
Q T0617 7 INIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 7 l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
+++++.++|.|+.+++.+.+.+.+.+.+++|||+.||.+|..|+.+||+|+++|++.++++++++|+++++|+++|||++
T Consensus 1 m~l~~~l~~~l~~~~~~i~~~~~~~~l~~~glt~~q~~vL~~i~~~~~~t~~~la~~l~~~~~~~s~~l~~L~~~Gli~r 80 (136)
T d2bv6a1 1 MNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKR 80 (136)
T ss_dssp CCSTTCHHHHHHHHHHHHHHHHHHHTHHHHTCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 97687899999999999999999998857697999999999997289979999999979788379999999997898797
Q ss_pred CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 567432230000017888999999999999999999857999899999999999999
Q T0617 87 NGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRN 143 (148)
Q Consensus 87 ~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~ 143 (148)
.++|.|+|.+.++||++|+++++++.+....+.+. .+++++|+..|..+|.++.+
T Consensus 81 ~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~--~~l~~~e~~~l~~~L~kli~ 135 (136)
T d2bv6a1 81 ERSEVDQREVFIHLTDKSETIRPELSNASDKVASA--SSLSQDEVKELNRLLGKVIH 135 (136)
T ss_dssp EECSSSTTCEEEEECHHHHHHHHHHTTHHHHHHHH--TTCCHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHC
T ss_conf 43477664032114898999999999999999988--09899999999999999980
No 4
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.88 E-value=7.4e-22 Score=163.51 Aligned_cols=134 Identities=19% Similarity=0.278 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC---CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999987289998999999997088---999889999865890114589999998413212567
Q T0617 13 ATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSAS---DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 13 l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~---~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
..+.|.++++.+.+.+.+.+ .++|||..||.+|..|...+ ++++++||+.++++++++|++|++|+++|||+|.++
T Consensus 36 ~~~ll~r~~~~l~~~~~~~l-~~~gLt~~q~~vL~~L~~~~~~~~lt~~eLa~~l~i~~~tvsr~l~~Le~~GlV~r~~~ 114 (172)
T d2fbka1 36 TLLLLERLHAALGREIERTY-AASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRED 114 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999999999999999999-88697999999999998518999968999999978678579999999986898444135
Q ss_pred CCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4322300000178889999999999999999998579998999999999999998830
Q T0617 90 SEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 90 ~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
|.|+|.+.+.||++|++++.++.+......+.++++|+++|...|..+|.++..++|+
T Consensus 115 ~~DrR~~~i~LT~~G~~l~~~~~~~~~~~~~~~~~~l~~~E~~~l~~~L~kl~~~lee 172 (172)
T d2fbka1 115 ERDRRSASIRLTPQGRALVTHLLPAHLATTQRVLAPLSAQEQRTLEELAGRMLAGLEQ 172 (172)
T ss_dssp ------CCBEECHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 5310467750489999999999999999999999379999999999999999987485
No 5
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=99.88 E-value=1.6e-21 Score=161.28 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 49999999999999999999998728999899999999708899988999986589011458999999841321256743
Q T0617 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 12 ~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
.+...+..+.+.+...+.+.+ +++|||++||.+|..|+.+||+++++||+.++++++++|+++++|+++|||+|.++|.
T Consensus 8 ~~~~~l~~l~~~~~~~~~~~l-~~~glt~~q~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~l~~L~~~glv~r~~~~~ 86 (143)
T d1s3ja_ 8 DIQLSLQALFQKIQPEMLESM-EKQGVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTK 86 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECC
T ss_conf 999999999999999999999-8869799999999999977998999999998969889999999999734001310137
Q ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22300000178889999999999999999998579998999999999999998830
Q T0617 92 DKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 92 D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
|+|.+.+.||++|++++.++.+........++++|+++|+..|..+|.++..+++.
T Consensus 87 D~R~~~v~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~kl~~~le~ 142 (143)
T d1s3ja_ 87 DRRVIDLSLTDEGDIKFEEVLAGRKAIMARYLSFLTEEEMLQAAHITAKLAQAAET 142 (143)
T ss_dssp CTTSEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 88713778898899999999999999999998589999999999999999997766
No 6
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=99.88 E-value=1.1e-21 Score=162.39 Aligned_cols=134 Identities=21% Similarity=0.322 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999999999987289998999999997088999889999865890114589999998413212567432
Q T0617 13 ATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 13 l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
+...+..+++.+...+ +...+++|||.+||.+|..|+++||+++++||+.++++++++|+++++|+++|||++.++|.|
T Consensus 3 l~r~i~~i~R~~~~~~-~~~~~~~~lt~~q~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~~L~~~glI~r~~~~~D 81 (144)
T d1lj9a_ 3 ILREIGMIARALDSIS-NIEFKELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASN 81 (144)
T ss_dssp HHHHHHHHHHHHHHHH-HHHTGGGTCTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999999999999999-999887698999999999998289989999999878247169999999996032010578899
Q ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2300000178889999999999999999998579998999999999999998830
Q T0617 93 KRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 93 ~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
+|.+.++||++|++++.++.+....+...++++++++|+..|..+|.++.+++++
T Consensus 82 ~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 136 (144)
T d1lj9a_ 82 KKIKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSE 136 (144)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9853125688899999999999999999998489999999999999999998999
No 7
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=99.87 E-value=1.6e-22 Score=168.04 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=125.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 56776499999999999999999999987289998999999997088999889999865890114589999998413212
Q T0617 7 INIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 7 l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
+.+++.++|.++.+++.+.+.+.+ +.+++|||++||.+|..|+.+||+|+++||+.++++++++|+.+++|+++|||++
T Consensus 1 m~l~~~l~~~l~~~~~~~~~~~~~-~l~~~gLt~~q~~vL~~l~~~~~~t~~~La~~~~i~~~~vsr~i~~L~~~glv~r 79 (137)
T d1z91a1 1 MKLENQLSFLLYASSREMTKQYKP-LLDKLNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITR 79 (137)
T ss_dssp CCGGGCHHHHHHHHHHHHHTTSHH-HHTTTCCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 960607999999999999999999-9878496999999999987589998999999979688889799999965005477
Q ss_pred CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 567432230000017888999999999999999999857999899999999999999883
Q T0617 87 NGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVD 146 (148)
Q Consensus 87 ~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~ 146 (148)
.++|.|+|.+.+.||++|++++.++.+....... +.+++++|+..|...|.++.+++.
T Consensus 80 ~~~~~D~R~~~i~lT~~G~~~~~~~~~~~~~~~~--~~~~~~ee~~~l~~~L~~l~~~ln 137 (137)
T d1z91a1 80 KRSEEDERSVLISLTEDGALLKEKAVDIPGTILG--LSKQSGEDLKQLKSALYTLLETLH 137 (137)
T ss_dssp CBCSSCTTSBEEEECHHHHSGGGGTTTHHHHHHH--HTCCCTHHHHHHHHHHHHHHHHTC
T ss_pred EECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 2168988857878898999999999999999998--729799999999999999998756
No 8
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.86 E-value=6.4e-21 Score=157.27 Aligned_cols=132 Identities=14% Similarity=0.287 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 499999999999999999999-9872899989999999970889998899998658901145899999984132125674
Q T0617 12 HATAQINMLANKLMLKSSTAY-TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 12 ~l~~~l~~l~~~~~~~~~~~~-~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
.+...+..+.+.+.+.+...+ .+.+|||.+||.+|..|+.+||+++++|++.+++++++||+.|++|+++|||++.++|
T Consensus 7 dl~~~l~~~~~~~~~~~~~~~~~~~~~lt~~q~~vL~~l~~~~~~t~~~la~~l~~~~~~vsr~l~~L~~~G~v~r~~~~ 86 (141)
T d1lnwa_ 7 DLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNP 86 (141)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSSTTCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCC
T ss_conf 19999999999999999999875057989999999999998799899999999784573799999999983230110347
Q ss_pred CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 32230000017888999999999999999999857999899999999999999
Q T0617 91 EDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRN 143 (148)
Q Consensus 91 ~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~ 143 (148)
.|+|.+.+.||++|++++.++.+....+.+.++++++++|...|.++|+++..
T Consensus 87 ~D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~ls~~e~~~l~~~L~kl~a 139 (141)
T d1lnwa_ 87 SDQRSFQLFLTDEGLAIHQHAEAIMSRVHDELFAPLTPVEQATLVHLLDQCLA 139 (141)
T ss_dssp SSSSSEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 88761112068989999999999999999999837999999999999999986
No 9
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=99.86 E-value=5.7e-21 Score=157.59 Aligned_cols=132 Identities=15% Similarity=0.249 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 4999999999999999999999872899989999999970889--99889999865890114589999998413212567
Q T0617 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASD--CSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 12 ~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~--~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
.++++|..+++.+...+.+ ..+.+|||.+||.+|.+|+.+|+ +|+++|++.++++++++|+.|++|+++|||.+.++
T Consensus 2 ~l~~ll~~~~~~~~~~~~~-~l~~~glt~~q~~vL~~l~~~~~~~it~~ela~~~~~~~~~vs~~l~~L~~~g~v~r~~~ 80 (135)
T d3broa1 2 DLGRLLKIASNQMSTRFDI-FAKKYDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVS 80 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHTTTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2999999999999999999-998869999999999999970799999999999989688689999999988888888861
Q ss_pred CCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4322300000178889999999999999999998579998999999999999998
Q T0617 90 SEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNK 144 (148)
Q Consensus 90 ~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~ 144 (148)
|.|+|.+.+.|||+|++++.++.+....+.+.++++++++|...|.++|.++.+|
T Consensus 81 ~~D~R~~~i~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~~~~~L~~l~~N 135 (135)
T d3broa1 81 GKDSRQKCLKLTKKANKLETIILSYMDSDQSQMTSGLNKEEVVFLEKILKRMIES 135 (135)
T ss_dssp SSCTTSEEEEECHHHHTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 0025666520457799999999999999999998689999999999999999729
No 10
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=99.86 E-value=5.6e-21 Score=157.65 Aligned_cols=131 Identities=18% Similarity=0.331 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 99999999999999999987289998999999997088999889999865890114589999998413212567432230
Q T0617 16 QINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRT 95 (148)
Q Consensus 16 ~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~ 95 (148)
.+..+.+.+...... ..+++|||++||.+|..|+.+||+++++||+.++++++++|+++++|+++|||++.++|.|+|.
T Consensus 7 llr~l~~~~~~~~~~-~l~~~glt~~q~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~ 85 (139)
T d2a61a1 7 ILREICFMVKVEGRK-VLRDFGITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRA 85 (139)
T ss_dssp HHHHHHHHHHHHHHT-THHHHTCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEECCCCCCE
T ss_conf 999999999999999-9988697999999999999769989999999839881442699999984572566321688886
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0000178889999999999999999998579998999999999999998830
Q T0617 96 YAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 96 ~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
+.|.||++|++++.++.+....+.+.++++++++|...+..+|.++..++++
T Consensus 86 ~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~le~ 137 (139)
T d2a61a1 86 YFLVITRKGEEVIEKVIERRENFIEKITSDLGKEKSSKILDYLKELKGVMER 137 (139)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 7889898999999999999999999999579999999999999999999861
No 11
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.85 E-value=3.5e-21 Score=158.98 Aligned_cols=131 Identities=20% Similarity=0.302 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 49999999999999999999998728999899999999708899988999986589011458999999841321256743
Q T0617 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 12 ~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
.+++.|.++.+.+...+... .+++|||.+||.+|..|+.+|++++++||+.++++++++|++|++|+++|||++.++|.
T Consensus 3 sL~~~l~~~~~~~~~~~~~~-l~~~glt~~q~~vL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~~ 81 (136)
T d2fbia1 3 SLTLTLLQAREAAMSFFRPS-LNQHGLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPK 81 (136)
T ss_dssp CHHHHHHHHHHHHHTTTHHH-HHHHTCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 78999999999999999999-98849799999999999976998999999998878988999999999889979845576
Q ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 2230000017888999999999999999999857999899999999999999
Q T0617 92 DKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRN 143 (148)
Q Consensus 92 D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~ 143 (148)
|+|.+.++||++|++++.++.+........++++++++|...+..+|.++.+
T Consensus 82 D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~ 133 (136)
T d2fbia1 82 DQRRVYVNLTEKGQQCFVSMSGDMEKNYQRIQERFGEEKLAQLLELLNELKK 133 (136)
T ss_dssp EEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 5750333058989999999999999999999857999999999999999871
No 12
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=99.84 E-value=7.9e-21 Score=156.68 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 99999999999999999987289998999999997088999889999865890114589999998413212567432230
Q T0617 16 QINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRT 95 (148)
Q Consensus 16 ~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~ 95 (148)
.++.+..++...+... ....|||.+||.+|..|+.+||+|+++||+.+++++|++|++|++|+++|||+|.++|.|+|.
T Consensus 9 ~l~~~~~~~~~~~~~~-~~~~~lt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~gli~r~~~~~D~R~ 87 (140)
T d2etha1 9 TLFSLVMRFSSYLPSN-EEISDMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRT 87 (140)
T ss_dssp HHHHHHHHHHTTSCCC-HHHHHSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSC
T ss_pred HHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCH
T ss_conf 9999999999999864-103599999999999999869959999999989698799999999987889666313344532
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0000178889999999999999999998579998999999999999998830
Q T0617 96 YAINLTEMGQELYEVASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
Q Consensus 96 ~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~ 147 (148)
+.+.||++|++++.++.+....+.+.++++++++|...|...|.++.+++++
T Consensus 88 ~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~i~~~l~~ 139 (140)
T d2etha1 88 YRVVLTEKGKEIFGEILSNFESLLKSVLEKFSEEDFKVVSEGFNRMVEALSR 139 (140)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 5540389899999999999999999999679999999999999999998856
No 13
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=99.84 E-value=2.1e-20 Score=153.90 Aligned_cols=128 Identities=21% Similarity=0.312 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999999999987289998999999997088999889999865890114589999998413212567432
Q T0617 13 ATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 13 l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
+++.+..+++.+.+ ..+...+++|||.+||.+|..|+.+|++++++|++.++++++++|++|++|+++|||+|.++|.|
T Consensus 8 lg~l~~~~~~~~~~-~~~~~l~~~~Lt~~q~~vL~~l~~~~~~t~~ela~~~~i~~~~vs~~v~~L~~~glv~r~~~~~D 86 (138)
T d1jgsa_ 8 LGRLIHMVNQKKDR-LLNEYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPND 86 (138)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHTTTTSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTC
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 99999999999999-99999878698999999988687180989999999978788579999998730787798631688
Q ss_pred CCEECCCCCHHHHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 23000001788899999999999-99999998579998999999999999
Q T0617 93 KRTYAINLTEMGQELYEVASDFA-IEREKQLLEEFEEAEKDQLFILLKKL 141 (148)
Q Consensus 93 ~R~~~l~LT~~G~~~~~~~~~~~-~~~~~~~~~~l~~ee~~~l~~~L~~l 141 (148)
+|.+.+.+|++|++++.++.+.. ..+.+.++++|+++|+..|.++|.++
T Consensus 87 ~R~~~i~lT~~G~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~kl 136 (138)
T d1jgsa_ 87 KRGVLVKLTTGGAAICEQCHQLVGQDLHQELTKNLTADEVATLEYLLKKV 136 (138)
T ss_dssp SSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHTT
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 87369898987899999999999999999998079999999999999866
No 14
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.78 E-value=2e-18 Score=140.61 Aligned_cols=135 Identities=13% Similarity=0.142 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 677649999999999999999999998728999899999999708-8999889999865890114589999998413212
Q T0617 8 NIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 8 ~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
+-+..++..|..+.+.+.+.+.+. ...+|||.+||.+|..|+.. |++|+++||+.++++++++|++|++|+++|||+|
T Consensus 3 ~~~~~l~~~L~~~~~~i~~~~~~~-~~~~glt~~q~~vL~~L~~~~g~~t~~~La~~~~~~~~~vs~~i~~L~~~glv~r 81 (145)
T d2hr3a1 3 NQDLQLAAHLRSQVTTLTRRLRRE-AQADPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVR 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 789999999999999999999987-6363989999999999998599979999999979898899999999987698676
Q ss_pred CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 5674322300000178889999999999999999-99857999899999999999999
Q T0617 87 NGHSEDKRTYAINLTEMGQELYEVASDFAIEREK-QLLEEFEEAEKDQLFILLKKLRN 143 (148)
Q Consensus 87 ~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~-~~~~~l~~ee~~~l~~~L~~l~~ 143 (148)
.++|.|+|.+.+.||++|++++.++.+....+.. .+.+.+++++.+.+..++..+..
T Consensus 82 ~~~~~DrR~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~~ 139 (145)
T d2hr3a1 82 HADPQDGRRTRVSLSSEGRRNLYGNRAKREEWLVRAMHACLDESERALLAAAGPLLTR 139 (145)
T ss_dssp EC------CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 3275401577733678999999999999999999998716999999999999999999
No 15
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=99.76 E-value=1.7e-18 Score=141.07 Aligned_cols=124 Identities=17% Similarity=0.242 Sum_probs=106.6
Q ss_pred CCHHHHH--HHHHHHHHHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 5677649--9999999999999999999---9872899989999999970889998899998658901145899999984
Q T0617 7 INIDRHA--TAQINMLANKLMLKSSTAY---TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 7 l~le~~l--~~~l~~l~~~~~~~~~~~~---~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
.+.++.+ +.++.++++.+++.+.+.+ .+++|||.+||.+|..|+.+|++|+++||+.++++++++|+++++|+++
T Consensus 3 ~~~~e~~~f~~~~~~l~~~l~~~v~~~~~~~lk~~~Lt~~q~~vL~~l~~~~~~t~~~la~~~~l~~~tvs~~i~rL~~~ 82 (162)
T d2fxaa1 3 YDVKEALVFTQKMAQLSKALWKSIEKDWQQWLKPYDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEER 82 (162)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 67788898999999999999999999999872425999899999965211899189999999769940319989999977
Q ss_pred HHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 1321256743223000001788899999999999999999985799989
Q T0617 82 KYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQLLEEFEEAE 130 (148)
Q Consensus 82 gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee 130 (148)
|||++.++|.|+|.+.+.||++|++++.++.+........++.+..+.+
T Consensus 83 gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (162)
T d2fxaa1 83 GYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEFDPTRNAVFKGSQPLY 131 (162)
T ss_dssp TSEEEECC------CEEEECHHHHHHHHHHHHHCCGGGCHHHHHTHHHH
T ss_pred CCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 7723420566572245225776999999999999999999982699699
No 16
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=99.66 E-value=4.8e-16 Score=124.81 Aligned_cols=111 Identities=20% Similarity=0.286 Sum_probs=90.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 321156776499999999999999999999987289998999999997088--999889999865890114589999998
Q T0617 3 AMQKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 3 am~~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
||.+.+- ++.+..+... ...+.+.+.++||||.+||.+|..|+.++ ++++++||+.++++++++|+++++|++
T Consensus 1 ~~~~i~~----~~~l~~~~~~-~~~~~~~~~~~~~Ls~~q~~vL~~l~~~~~~~~t~~~la~~l~~~~~tvs~~i~~Le~ 75 (115)
T d2frha1 1 AITKIND----CFELLSMVTY-ADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 75 (115)
T ss_dssp CCCCCCS----HHHHHHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCHHHHH----HHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9158999----9999999999-9999999887759899999999999808999988999999979788689999999984
Q ss_pred HHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 41321256743223000001788899999999999999
Q T0617 81 KKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIER 118 (148)
Q Consensus 81 ~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~ 118 (148)
+|||++.++|.|+|.+.+.|||+|+++++++.+...+.
T Consensus 76 ~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~ 113 (115)
T d2frha1 76 EDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKR 113 (115)
T ss_dssp TTSSCCBCCSSSSCCCEEECCSHHHHHHHHHHHHHHHH
T ss_pred HHHHEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 66513210136786479898988999999999999856
No 17
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=99.64 E-value=1.1e-15 Score=122.32 Aligned_cols=94 Identities=13% Similarity=0.227 Sum_probs=83.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHC--CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHH
Q ss_conf 999999998728999899999999708--899988999986589011458999999841321256743223000001788
Q T0617 26 LKSSTAYTQKFGIGMTEWRIISVLSSA--SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEM 103 (148)
Q Consensus 26 ~~~~~~~~~~~glt~~q~~iL~~l~~~--~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~ 103 (148)
..+.+.+.+++|||..||.+|.+|+.. +++++++||+.++++++++|++|++|+++|||+|.++|.|+|.+.+.||++
T Consensus 19 ~~~~~~~~k~~~Ls~~q~~vL~~l~~~~~~~~~~~~ia~~l~~~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~ 98 (125)
T d1p4xa2 19 MYFKNIIKKHLTLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDA 98 (125)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHH
T ss_conf 99999999876999999999999998037883699999997898424999999998005776542178887578878999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999
Q T0617 104 GQELYEVASDFAIERE 119 (148)
Q Consensus 104 G~~~~~~~~~~~~~~~ 119 (148)
|++++.++.+...+..
T Consensus 99 G~~~~~~l~~~~~~~i 114 (125)
T d1p4xa2 99 QQDHAEQLLAQVNQLL 114 (125)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999998
No 18
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=99.63 E-value=9.3e-16 Score=122.88 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 9999999999987289998999999997088--99988999986589011458999999841321256743223000001
Q T0617 23 KLMLKSSTAYTQKFGIGMTEWRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINL 100 (148)
Q Consensus 23 ~~~~~~~~~~~~~~glt~~q~~iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~L 100 (148)
..+..+.+.+.+.+|||..||.+|..|+.++ ++++++||+.++++++++|++|++|+++|||+|.+++.|+|.+.++|
T Consensus 17 ~~~~~~~~~~~~~~~Lt~~q~~iL~~l~~~~~~~~t~~eia~~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~l 96 (125)
T d1p4xa1 17 AYMFRFKKKVKPEVDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISI 96 (125)
T ss_dssp HHHHHHHHHHTTTCSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEEC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCEEEEEE
T ss_conf 99999999999874998899999999998436986799999996888243999999999889810212358987379888
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7888999999999999999999
Q T0617 101 TEMGQELYEVASDFAIEREKQL 122 (148)
Q Consensus 101 T~~G~~~~~~~~~~~~~~~~~~ 122 (148)
|++|++.++++.....++...+
T Consensus 97 T~~G~~~~~~~~~~~~~~i~~~ 118 (125)
T d1p4xa1 97 SEEQREKIAERVTLFDQIIKQF 118 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999977
No 19
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=99.61 E-value=3.7e-16 Score=125.56 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 9999999999999999872899989999999970--88999889999865890114589999998413212567432230
Q T0617 18 NMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSS--ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRT 95 (148)
Q Consensus 18 ~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~--~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~ 95 (148)
..+.+.+.+ +.+...++||||.+||.+|..|.. .+++++++||+.++++++++|++|++|+++|||+|.++|.|+|.
T Consensus 11 ~~a~~~~~~-~~~~~~~~~~Lt~~q~~vL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~i~~Le~~gli~r~~~~~D~R~ 89 (115)
T d1hsja1 11 VNATFQVKK-FFRDTKKKFNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERT 89 (115)
T ss_dssp HHHHHHHHH-HHHHHSSSCCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSC
T ss_pred HHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCE
T ss_conf 999999999-9999874559999999999999806899948999999978885359999999998687698760477845
Q ss_pred ECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0000178889999999999999
Q T0617 96 YAINLTEMGQELYEVASDFAIE 117 (148)
Q Consensus 96 ~~l~LT~~G~~~~~~~~~~~~~ 117 (148)
+.+.||++|++++.++.+...+
T Consensus 90 ~~i~LT~~G~~~~~~~~~~~~~ 111 (115)
T d1hsja1 90 VIVYVTDTQKANIQKLISELEE 111 (115)
T ss_dssp CEEECCSSHHHHHHHHHHHHGG
T ss_pred EEEEECHHHHHHHHHHHHHHHH
T ss_conf 8989998999999999999999
No 20
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.54 E-value=1e-13 Score=109.20 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 999999999999999998728999899999999708-8999889999865890114589999998413212567432230
Q T0617 17 INMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRT 95 (148)
Q Consensus 17 l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~~l~~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~ 95 (148)
+....+.+...+.+ ..+.+|++.+++.++..|... +|+|+++||+.++++++++|+.|++|+++|||.+.++|+|+|.
T Consensus 4 l~~~~~~~~~~~~~-~~~~~Gl~~~~~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~l~~L~~~GlV~r~~~~~drr~ 82 (151)
T d1ku9a_ 4 MEEAKKLIIELFSE-LAKIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKN 82 (151)
T ss_dssp HHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSC
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCE
T ss_conf 99999999999999-99983999999999999984898928999999867770249999999998899799874788744
Q ss_pred ECCCCCHHHHH--HHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 00001788899--999---99999999999998579998999999999999998
Q T0617 96 YAINLTEMGQE--LYE---VASDFAIEREKQLLEEFEEAEKDQLFILLKKLRNK 144 (148)
Q Consensus 96 ~~l~LT~~G~~--~~~---~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~ 144 (148)
+.+.+|++|.. +.+ +......+....+.+.+++++...+...+.++...
T Consensus 83 ~~~~~t~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 136 (151)
T d1ku9a_ 83 YYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEEKCNEEEKEFIKQKIKGIERM 136 (151)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHTHH
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 677678888999999999742588999999987439999999999999999999
No 21
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.35 E-value=5e-13 Score=104.66 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999708899988999986589011458999999841321256743223000001788899999999999999
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIER 118 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~ 118 (148)
++.++.||.+|..+|++++++|++.++++++++|+.+++|++.|||++.+++.|+|.+.+.||++|++.+.+..+...+.
T Consensus 15 ~p~r~~IL~~L~~~~~~~~~eLa~~l~is~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~~~~~~~~~~~ 94 (100)
T d1ub9a_ 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKAV 94 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999876047990199999998625432309999882310368887576776534557899999999999999999
Q ss_pred HH
Q ss_conf 99
Q T0617 119 EK 120 (148)
Q Consensus 119 ~~ 120 (148)
.+
T Consensus 95 ~~ 96 (100)
T d1ub9a_ 95 ID 96 (100)
T ss_dssp HH
T ss_pred HH
T ss_conf 97
No 22
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=99.31 E-value=1.1e-12 Score=102.41 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=84.3
Q ss_pred HHHHHHCCCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 9999872899989999999970-889998899998658901145899999984132125674322300000178889999
Q T0617 30 TAYTQKFGIGMTEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 30 ~~~~~~~glt~~q~~iL~~l~~-~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
+.+...|||+..+|.+|..|.. .|++|+++||+.++++++++++.+++|+++|||++.+++.|+|.+.+++|..|.++.
T Consensus 11 ~~l~~~~gLs~~~~~iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~l~~L~~~GlV~r~~~~~d~rg~~~~~~~~~~~~~ 90 (109)
T d2d1ha1 11 DEIRCCYKITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNIL 90 (109)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCHHHH
T ss_conf 99998269599999999999976989889999999885676999999999978997985268889862688840789999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q T0617 109 EVASDFAIEREKQL 122 (148)
Q Consensus 109 ~~~~~~~~~~~~~~ 122 (148)
+.+......+.+.+
T Consensus 91 ~~i~~~~~~~~~k~ 104 (109)
T d2d1ha1 91 EKIRNDLLNCAKRM 104 (109)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999987
No 23
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.28 E-value=1.3e-11 Score=95.29 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=87.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHH
Q ss_conf 99999998728999899999999708899988999986589011458999999841321256743223000001788899
Q T0617 27 KSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQE 106 (148)
Q Consensus 27 ~~~~~~~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~ 106 (148)
.+.+. .+++|||..|+.++..|..+|++|+++||+.+++++++|++.+++|+++|||+|..++.|+|.+.+..++.+ +
T Consensus 8 ~l~~~-L~~lGlt~~e~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~l~~L~~~GlV~r~~~~~~~r~~~~~a~~~~-e 85 (109)
T d1sfxa_ 8 ELVKA-LEKLSFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPE-K 85 (109)
T ss_dssp HHHHH-HHHTCCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHH-H
T ss_pred HHHHH-HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHH-H
T ss_conf 99999-998599999999999988238998999999857983559999999995998798850578850222588879-9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 9999999999999999857999
Q T0617 107 LYEVASDFAIEREKQLLEEFEE 128 (148)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~ 128 (148)
++..+.....+....+...|++
T Consensus 86 ~l~~~~~~~~~~l~eLe~~l~e 107 (109)
T d1sfxa_ 86 VLKEFKSSILGEIERIEKMFTD 107 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999987202
No 24
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=99.11 E-value=6.7e-11 Score=90.50 Aligned_cols=74 Identities=24% Similarity=0.350 Sum_probs=63.2
Q ss_pred HHHHHHHHH------HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999999997------08899988999986589011458999999841321256743223000001788899999999999
Q T0617 42 EWRIISVLS------SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFA 115 (148)
Q Consensus 42 q~~iL~~l~------~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~ 115 (148)
.|.+|..|. ..+++|+++||+.++++++++|++|++|+++|||+| +.|+|.+.+.||++|++++.+..+.+
T Consensus 3 ~~~~l~~l~~~~~~~~~~~lt~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r---~~D~R~~~i~LT~~G~~~l~~~~~~~ 79 (85)
T d3ctaa1 3 YYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITR---TVTKRGQILNITEKGLDVLYTEFADL 79 (85)
T ss_dssp HHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE---EEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE---ECCCCCCCCEECHHHHHHHHHHHHHH
T ss_conf 999999999826015899988999999988788789999999998798043---12455430007899999999999999
Q ss_pred HHH
Q ss_conf 999
Q T0617 116 IER 118 (148)
Q Consensus 116 ~~~ 118 (148)
...
T Consensus 80 ~rl 82 (85)
T d3ctaa1 80 SRI 82 (85)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
No 25
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=99.09 E-value=2.5e-11 Score=93.38 Aligned_cols=105 Identities=17% Similarity=0.325 Sum_probs=77.6
Q ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHH
Q ss_conf 8728999899999999708899988999986----589011458999999841321256743223000001788899999
Q T0617 34 QKFGIGMTEWRIISVLSSASDCSVQKISDIL----GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
Q Consensus 34 ~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l----~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~ 109 (148)
+.++||.+||.||.+||.+||+|+++|.+.+ +++.+||+.++++|+++|||+|.++ +++.++..+.++......
T Consensus 1 K~~~lt~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~r~~~--gr~~~Y~~~~~~~~~~~~ 78 (120)
T d1okra_ 1 KTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD--NKIFQYYSLVEESDIKYK 78 (120)
T ss_dssp CCCCCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE--TTEEEEEESSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEC--CCCEEEEECCCHHHHHHH
T ss_conf 999979999999999985899789999999752128648769999999997898588734--882688636889999999
Q ss_pred HHHHHHHH--------HHHHHH--HCCCHHHHHHHHHHHHH
Q ss_conf 99999999--------999998--57999899999999999
Q T0617 110 VASDFAIE--------REKQLL--EEFEEAEKDQLFILLKK 140 (148)
Q Consensus 110 ~~~~~~~~--------~~~~~~--~~l~~ee~~~l~~~L~~ 140 (148)
........ ....++ .+++++|++.+.++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~el~~L~~lL~~ 119 (120)
T d1okra_ 79 TSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNK 119 (120)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHSCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 99889999981569999999998169899999999999856
No 26
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=98.52 E-value=4e-07 Score=65.39 Aligned_cols=104 Identities=13% Similarity=0.215 Sum_probs=76.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHH----
Q ss_conf 28999899999999708899988999986----5890114589999998413212567432230000017888999----
Q T0617 36 FGIGMTEWRIISVLSSASDCSVQKISDIL----GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQEL---- 107 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l----~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~---- 107 (148)
..||..++.||.+||..||+|++||.+.+ +++.+||..++++|+++|||.+... +|...+...-.=.++
T Consensus 2 i~ls~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~tTv~T~L~rL~~Kg~l~~~~~---gr~~~Y~~~v~~~~~~~~~ 78 (122)
T d1sd4a_ 2 VEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKS---ENIYFYSSNIKEDDIKMKT 78 (122)
T ss_dssp CCCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECC---CCEEEEEECCCHHHHHHHH
T ss_conf 9888999999999984799779999998414589958589999999986102035336---9807886368899999999
Q ss_pred ----HHHHH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHH
Q ss_conf ----99999-9999999999857--99989999999999999
Q T0617 108 ----YEVAS-DFAIEREKQLLEE--FEEAEKDQLFILLKKLR 142 (148)
Q Consensus 108 ----~~~~~-~~~~~~~~~~~~~--l~~ee~~~l~~~L~~l~ 142 (148)
++... .........++++ ++++|++.+.+++++..
T Consensus 79 ~~~~~~~~~~gs~~~lv~~~~~~~~ls~~el~eL~~~l~~~~ 120 (122)
T d1sd4a_ 79 AKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDIS 120 (122)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999996999999999998578999999999999999874
No 27
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.51 E-value=6.2e-07 Score=64.07 Aligned_cols=103 Identities=19% Similarity=0.175 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHCC-CCCHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHH----
Q ss_conf 89998999999997088-999889999865----890114589999998413212567432230000017888999----
Q T0617 37 GIGMTEWRIISVLSSAS-DCSVQKISDILG----LDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQEL---- 107 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~-~~t~~eLa~~l~----i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~---- 107 (148)
-|+..++.||.+||..| |+|++||.+.+. ++.+||..++++|+++|||++... +|...+..+-.=.++
T Consensus 4 ~L~~~E~~IM~~lW~~g~~~t~~eI~~~l~~~~~~~~sTV~T~L~rL~~Kg~l~~~~~---gr~~~Y~~~i~~e~~~~~~ 80 (122)
T d2g9wa1 4 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRD---DRAHRYAPVHGRDELVAGL 80 (122)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC------CCEEEESSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEC---CCEEEEEECCCHHHHHHHH
T ss_conf 8779999999999848999569999998712479958789999999997898778606---9807987378899999999
Q ss_pred HHHHH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999------999999999985799989999999999999
Q T0617 108 YEVAS------DFAIEREKQLLEEFEEAEKDQLFILLKKLR 142 (148)
Q Consensus 108 ~~~~~------~~~~~~~~~~~~~l~~ee~~~l~~~L~~l~ 142 (148)
..+.. .........+++.++++|.+.+.++++++.
T Consensus 81 ~~~~l~~~~~~gs~~~~~~~l~~~ls~~el~~L~~ll~~~e 121 (122)
T d2g9wa1 81 MVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELE 121 (122)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999888718989999999998799999999999998633
No 28
>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}
Probab=98.01 E-value=9.4e-06 Score=56.24 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=65.4
Q ss_pred HHHHHHHHHCCCCCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999708899988999986-589011458999999841321256743223000001788899999999999999999
Q T0617 43 WRIISVLSSASDCSVQKISDIL-GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQ 121 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l-~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~ 121 (148)
..||..|. .|+...+||.+.+ ++++..+|+.++.|++.|+|.|...+.....+.+.||++|+++.+-+.+ ...|-+.
T Consensus 22 ~~Il~~L~-~g~~RF~el~~~l~gIS~~~Ls~rLk~L~~~glv~R~~~~~~p~~veY~LT~~G~~L~pil~~-l~~W~~~ 99 (108)
T d1z7ua1 22 LSLMDELF-QGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDALSS-LCHWGET 99 (108)
T ss_dssp HHHHHHHH-HSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEHHHHCHHHHHHHHHHHH-HHHHHHH
T ss_conf 99999997-599889999977737776689999999997895034315777653211326607789999999-9999999
Q ss_pred HH
Q ss_conf 98
Q T0617 122 LL 123 (148)
Q Consensus 122 ~~ 123 (148)
..
T Consensus 100 ~~ 101 (108)
T d1z7ua1 100 FA 101 (108)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 29
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=97.93 E-value=3e-05 Score=52.82 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC--CCCEECCCCCHH
Q ss_conf 99899999999708899988999986589011458999999841321256743--223000001788
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE--DKRTYAINLTEM 103 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~--D~R~~~l~LT~~ 103 (148)
++....||..|. .+|+|+++||+.+|++++++++.++.|++.|+|+....+. .++.+.+.+|++
T Consensus 18 ~p~R~~Il~~L~-~~~~s~~ela~~lg~s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~ 83 (190)
T d1ulya_ 18 EDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTAD 83 (190)
T ss_dssp SHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSS
T ss_pred CHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCC
T ss_conf 999999999998-199879999999891999999999999988983899860458851389987441
No 30
>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}
Probab=97.89 E-value=1.2e-05 Score=55.61 Aligned_cols=78 Identities=12% Similarity=0.304 Sum_probs=64.0
Q ss_pred HHHH--HHHHHHHCCCCCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8999--99999708899988999986-58901145899999984132125674322300000178889999999999999
Q T0617 41 TEWR--IISVLSSASDCSVQKISDIL-GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIE 117 (148)
Q Consensus 41 ~q~~--iL~~l~~~~~~t~~eLa~~l-~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~ 117 (148)
..|. ||..|. .|+...+||.+.+ ++++..+|..++.|++.|+|+|...+.....+.+.||++|+++..-+.+. ..
T Consensus 23 ~kW~l~Il~~L~-~g~~RF~el~~~l~gis~~~Ls~rL~~Le~~glv~R~~~~~~p~~veY~LT~~G~~L~~il~~l-~~ 100 (114)
T d1yyva1 23 SRWGVLILVALR-DGTHRFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDKVAAL-AD 100 (114)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHH-CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 987999999996-0999999999774033524799989999998887300257888415767517188999999999-99
Q ss_pred HHH
Q ss_conf 999
Q T0617 118 REK 120 (148)
Q Consensus 118 ~~~ 120 (148)
|-.
T Consensus 101 W~~ 103 (114)
T d1yyva1 101 WIE 103 (114)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 31
>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}
Probab=97.89 E-value=8.4e-06 Score=56.53 Aligned_cols=76 Identities=12% Similarity=0.183 Sum_probs=64.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999708899988999986-58901145899999984132125674322300000178889999999999999999
Q T0617 43 WRIISVLSSASDCSVQKISDIL-GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREK 120 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l-~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~ 120 (148)
..||..| ..|+...+||.+.+ ++++...|..++.|++.|+|+|...+.....+.+.||++|+++.+-+.+. ..|-+
T Consensus 14 l~Il~~L-~~g~~rF~el~~~l~gis~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~~G~~L~pil~~l-~~W~~ 90 (95)
T d2hzta1 14 CVILCHL-THGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDML-CAWGA 90 (95)
T ss_dssp HHHHHHH-TTCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHH-HHHHH
T ss_pred HHHHHHH-HCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 9999999-74999799999773267765899999999996877300012455301324446288999999999-99999
No 32
>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}
Probab=97.86 E-value=1e-05 Score=55.96 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=62.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999999708899988999986-58901145899999984132125674322300000178889999999999
Q T0617 43 WRIISVLSSASDCSVQKISDIL-GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l-~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
..||..|. .|+...+||.+.+ ++++...|..++.|++.|+|.|...+.....+.+.||++|+++.+-+.+.
T Consensus 23 l~Il~~L~-~g~~rF~el~~~l~gIs~~~Ls~rLkeL~~~glv~r~~~~~~p~~veY~LT~~G~~L~pil~~l 94 (102)
T d2fswa1 23 LLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIIDEI 94 (102)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHHHH
T ss_pred HHHHHHHC-CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEHHHHHHHHHHHHHHHHHH
T ss_conf 99999983-6998899997657255646899999999988960432458889731326547288999999999
No 33
>d2esha1 a.4.5.61 (A:4-117) Hypothetical protein TM0937 {Thermotoga maritima [TaxId: 2336]}
Probab=97.84 E-value=6.2e-05 Score=50.78 Aligned_cols=80 Identities=10% Similarity=0.098 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC---------CCCCHHHHHHHHHHHHHHHHCCCCCCCCC-EECCCCCHHHHHHHH
Q ss_conf 98999999997088999889999865---------89011458999999841321256743223-000001788899999
Q T0617 40 MTEWRIISVLSSASDCSVQKISDILG---------LDKAAVSRTVKKLEEKKYIEVNGHSEDKR-TYAINLTEMGQELYE 109 (148)
Q Consensus 40 ~~q~~iL~~l~~~~~~t~~eLa~~l~---------i~~~~vs~~i~~L~~~gli~r~~~~~D~R-~~~l~LT~~G~~~~~ 109 (148)
.-...||..|.+ +|.+.-+|.+.+. ++++++-..+++|+++|||+....+.+++ .+.+.+|++|++.+.
T Consensus 10 ~l~~~iL~lL~~-~~~~GYei~~~i~~~~~~~~~~~~~gtiY~~L~rLe~~G~I~~~~~~~~g~~rk~Y~IT~~G~~~l~ 88 (114)
T d2esha1 10 WLASTILLLVAE-KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLR 88 (114)
T ss_dssp HHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECHHHHHHHH
T ss_conf 899999999843-9966999999999964787336997737999999998898499852378988679998988999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q T0617 110 VASDFAIEREK 120 (148)
Q Consensus 110 ~~~~~~~~~~~ 120 (148)
+.........+
T Consensus 89 ~~~~~~~~~~~ 99 (114)
T d2esha1 89 EILRSLEDMKR 99 (114)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 34
>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=97.82 E-value=2.7e-05 Score=53.18 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=61.5
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997088999889999865890114589999998413212567432230000017888999999999999999999
Q T0617 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQL 122 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~~~ 122 (148)
..||..+ ..|+...+||.+.+++++..++.-++.|++.|+|++..++. ...+.+.||++|++++.-+.. +.+|-++.
T Consensus 23 l~Il~~l-~~G~~rf~el~~~lgis~~vLs~rL~~L~~~gLv~r~~~~~-p~r~~Y~LT~~G~~L~pil~~-l~~W~~~~ 99 (142)
T d2f2ea1 23 MLIVRDA-FEGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAES-GSHQEYRLTDKGRALFPLLVA-IRQWGEDY 99 (142)
T ss_dssp HHHHHHH-HTTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS-SSCEEEEECHHHHTTHHHHHH-HHHHHHHH
T ss_pred HHHHHHH-HCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEECCCC-CCEEEEECCCCCCHHHHHHHH-HHHHHHHH
T ss_conf 9999999-74997799999774003889999999999710435545899-975678438384129999999-99999997
Q ss_pred H
Q ss_conf 8
Q T0617 123 L 123 (148)
Q Consensus 123 ~ 123 (148)
+
T Consensus 100 ~ 100 (142)
T d2f2ea1 100 F 100 (142)
T ss_dssp S
T ss_pred C
T ss_conf 7
No 35
>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}
Probab=97.78 E-value=4.3e-05 Score=51.84 Aligned_cols=79 Identities=22% Similarity=0.221 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCEECCCCCHHHHHHHHH
Q ss_conf 899999999708899988999986--------5890114589999998413212567432--230000017888999999
Q T0617 41 TEWRIISVLSSASDCSVQKISDIL--------GLDKAAVSRTVKKLEEKKYIEVNGHSED--KRTYAINLTEMGQELYEV 110 (148)
Q Consensus 41 ~q~~iL~~l~~~~~~t~~eLa~~l--------~i~~~~vs~~i~~L~~~gli~r~~~~~D--~R~~~l~LT~~G~~~~~~ 110 (148)
-+..||..|.+. |++.-+|.+.+ .++++++-..+++|+++|||+......+ +..+.+.+|++|++.+.+
T Consensus 8 l~~~IL~lL~~~-~~~GYei~~~l~~~~~~~~~is~gslY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~iT~~G~~~l~~ 86 (103)
T d1xmaa_ 8 VDTIILSLLIEG-DSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQ 86 (103)
T ss_dssp HHHHHHHHHHHC-CEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHH
T ss_conf 999999998618-9449999999999709853589776599999999889947886316899876699989889999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q T0617 111 ASDFAIEREK 120 (148)
Q Consensus 111 ~~~~~~~~~~ 120 (148)
....+.....
T Consensus 87 ~~~~~~~~~~ 96 (103)
T d1xmaa_ 87 KCEEWELTKK 96 (103)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 36
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=97.77 E-value=2.3e-05 Score=53.61 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=60.2
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHH
Q ss_conf 9872899989999999970889998899998658901145899999984132125674322300000178889
Q T0617 33 TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQ 105 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~ 105 (148)
.+.++ ++....+|..|...|++++++|++.++++++++|..++.|...|+|..++ +||.+.+++.+...
T Consensus 25 ~kaLa-dp~Rl~Il~~L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~~aGlv~~~r---~G~~~~Y~l~~~~i 93 (108)
T d1u2wa1 25 LKAIA-DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRK---EGKLALYSLGDEHI 93 (108)
T ss_dssp HHHHH-SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-------CCEEEESCHHH
T ss_pred HHHHC-CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEE---ECCEEEEEECHHHH
T ss_conf 99948-99999999999868991499999888557257999999999889458998---88889999887999
No 37
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=97.71 E-value=9.1e-05 Score=49.66 Aligned_cols=67 Identities=18% Similarity=0.324 Sum_probs=57.1
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHH
Q ss_conf 987289998999999997088999889999865890114589999998413212567432230000017888
Q T0617 33 TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMG 104 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G 104 (148)
.+..+ .+....||..|. .++.++++|++.++++++++|..++.|.+.|+|..++ +||.+++++++..
T Consensus 17 ~kaL~-~p~Rl~Il~~L~-~~~~~v~ela~~l~is~stvS~HL~~L~~aglV~~~r---~G~~~~Y~l~~~~ 83 (98)
T d1r1ta_ 17 FAVLA-DPNRLRLLSLLA-RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRK---QGRHVYYQLQDHH 83 (98)
T ss_dssp HHHHC-CHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEESSHH
T ss_pred HHHHC-CHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE---ECCEEEEEECHHH
T ss_conf 99958-999999999998-1996799999998929889999999999889248998---8798999988399
No 38
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=97.69 E-value=5.7e-05 Score=51.00 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=52.7
Q ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHH
Q ss_conf 99999999708-899988999986589011458999999841321256743223000001788899999999
Q T0617 42 EWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
Q Consensus 42 q~~iL~~l~~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 112 (148)
-+.||.++..+ +|++.+|||+.++++++++.|+++.|++.||+++. + |++ +.++++..++-..+.
T Consensus 7 ~l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~--~-~g~---y~lG~~l~~lg~~~l 72 (75)
T d1mkma1 7 AFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK--K-DKR---YVPGYKLIEYGSFVL 72 (75)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC--T-TSC---EEECTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC--C-CCC---EEECHHHHHHHHHHH
T ss_conf 99999999857999899999999791999999999999988998889--9-997---863299999999998
No 39
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
Probab=97.68 E-value=2.5e-05 Score=53.34 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 8999899999999708899988999986----589011458999999841321256743223000001
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDIL----GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINL 100 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l----~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~L 100 (148)
.||..++.||.+||..||.+++||.+.+ +.+.+||..++++|+++|+|.+... +|...+..
T Consensus 6 ~Ls~~E~~IM~~lW~~~~~t~~ei~~~l~~~~~~~~tTv~T~L~rL~~KG~l~~~k~---gr~~~Y~p 70 (82)
T d1p6ra_ 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKE---GRVFVYTP 70 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEC---CCEEEEEE
T ss_conf 999999999999995799789999998502369728479999999998898678705---98589974
No 40
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=97.67 E-value=3.8e-05 Score=52.20 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHH----CC-CCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEC
Q ss_conf 899989999999970----88-9998899998658-9011458999999841321256743223000
Q T0617 37 GIGMTEWRIISVLSS----AS-DCSVQKISDILGL-DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYA 97 (148)
Q Consensus 37 glt~~q~~iL~~l~~----~~-~~t~~eLa~~l~i-~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~ 97 (148)
+||+.|-.+|.+|.. +| +.|..||++.+|+ ++++|...|+.|+++|||++.+. ..|...
T Consensus 2 ~LT~rQ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~r~~~--~~R~i~ 66 (71)
T d1jhfa1 2 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSG--ASRGIR 66 (71)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSS--SSSCEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCC--CCCEEE
T ss_conf 87999999999999999982889889999977299999999999999999759306899--985167
No 41
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=97.60 E-value=3.4e-05 Score=52.51 Aligned_cols=65 Identities=23% Similarity=0.224 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC--CCCCCEECCCCCHHH
Q ss_conf 998999999997088999889999865890114589999998413212567--432230000017888
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH--SEDKRTYAINLTEMG 104 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~--~~D~R~~~l~LT~~G 104 (148)
++.-..||..|.. +++|+++||+.+++++++|++.++.|++.|+|+.... +..+..+.+.+|+.|
T Consensus 14 ~~~R~~Il~~L~~-~~~~~~ela~~l~~s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~ 80 (194)
T d2p4wa1 14 NETRRRILFLLTK-RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (194)
T ss_dssp SHHHHHHHHHHHH-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCC
T ss_conf 9999999999980-898799999998909989999999999889707997424898755899954664
No 42
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=97.59 E-value=0.00016 Score=48.01 Aligned_cols=67 Identities=25% Similarity=0.393 Sum_probs=57.0
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHH
Q ss_conf 987289998999999997088999889999865890114589999998413212567432230000017888
Q T0617 33 TQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMG 104 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G 104 (148)
.+..+ .+..+.||..|.. +++++++|++.++++++++|+.++.|.+.|+|..++ +||.+.+.|++..
T Consensus 12 fkaL~-d~~Rl~Il~~L~~-~~~~v~el~~~l~~s~~~vS~HL~~L~~~glv~~~r---~G~~~~Y~l~~~~ 78 (94)
T d1r1ua_ 12 FKALG-DYNRIRIMELLSV-SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKR---QGQSMIYSLDDIH 78 (94)
T ss_dssp HHHTC-SHHHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEESSHH
T ss_pred HHHHC-CHHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE---ECCEEEEEECCHH
T ss_conf 99838-9999999999972-995699999998878778999999999889537998---8789999989199
No 43
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=97.56 E-value=3.2e-05 Score=52.68 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8999999997088999889999865890114589999998413212567
Q T0617 41 TEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 41 ~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
....||..|..+|++|..|||+.+++++++|++.++.|++.|+|+....
T Consensus 7 N~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~l~~L~~~Glv~e~~~ 55 (71)
T d1z05a1 7 NAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETTV 55 (71)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 9999999999859948999999988788789999999998898797167
No 44
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.54 E-value=7e-05 Score=50.41 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHH---H-HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999899999999---7-0889998899998658901145899999984132125674
Q T0617 38 IGMTEWRIISVL---S-SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 38 lt~~q~~iL~~l---~-~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
||.+.=..|..| . ..++.+.++||+.+++++|+||.+|++|.++|||...++.
T Consensus 3 ls~s~EdYL~~I~~L~~~~~~v~~~~iA~~L~vs~~SVt~mvkrL~~~Glv~~~~y~ 59 (63)
T d2isya1 3 LVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDR 59 (63)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCC
T ss_conf 867899999999999855897709999999689944399999999988898876898
No 45
>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae [TaxId: 666]}
Probab=97.50 E-value=0.00019 Score=47.52 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=66.0
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHH--------CCCCCHHHHHHHHHHHHHHHHCCCCCCCCC--EECCCCCHHHHHHHHHH
Q ss_conf 99999999708899988999986--------589011458999999841321256743223--00000178889999999
Q T0617 42 EWRIISVLSSASDCSVQKISDIL--------GLDKAAVSRTVKKLEEKKYIEVNGHSEDKR--TYAINLTEMGQELYEVA 111 (148)
Q Consensus 42 q~~iL~~l~~~~~~t~~eLa~~l--------~i~~~~vs~~i~~L~~~gli~r~~~~~D~R--~~~l~LT~~G~~~~~~~ 111 (148)
.+.||..|.. +|++.-+|.+.+ .++.+++-..+++|+++|||+....+.+++ .+.+.+|++|++.+.+.
T Consensus 3 ~~~iLg~L~~-~~~~GYei~~~~~~~~~~~w~~s~g~iY~~L~kLe~~Gli~~~~~~~~~~~~rk~Y~iT~~Gr~~l~~w 81 (178)
T d1yg2a_ 3 PHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEW 81 (178)
T ss_dssp HHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHH
T ss_conf 9999999860-899899999999998488417997709999999997898477853058997763778788899999999
Q ss_pred HHHH-------HHHHHH--HHHCCCHHHHHHHH
Q ss_conf 9999-------999999--98579998999999
Q T0617 112 SDFA-------IEREKQ--LLEEFEEAEKDQLF 135 (148)
Q Consensus 112 ~~~~-------~~~~~~--~~~~l~~ee~~~l~ 135 (148)
.... ..+.-. +++.+++++.....
T Consensus 82 l~~~~~~~~~~~~~~~kl~f~~~l~~~~~~~~L 114 (178)
T d1yg2a_ 82 FDQPTAHPTVRDEFSAKLMACSVQSAEPYRLQL 114 (178)
T ss_dssp HHSCCCCCCCCCHHHHHHHGGGTSCHHHHHHHH
T ss_pred HHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 855656875403699999985129989999999
No 46
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=97.46 E-value=6e-05 Score=50.86 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=36.8
Q ss_pred HHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 70889998899998658901145899999984132125674
Q T0617 50 SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 50 ~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
...|+.+.++||+.+++++++||.++++|+++|||...+..
T Consensus 17 ~~~~~v~~~~iA~~L~vs~~SVs~mikrL~~~GlV~~~~Y~ 57 (61)
T d2ev0a1 17 EEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYR 57 (61)
T ss_dssp HHHSSCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred HCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCC
T ss_conf 35897509999999589951599999999888997770677
No 47
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.44 E-value=0.00011 Score=49.19 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 899999999708899988999986589011458999999841321256
Q T0617 41 TEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 41 ~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
....||..|..+|++|-.+||+.+++++++|+++++.|++.|+|+...
T Consensus 6 N~~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~~L~~~glv~e~g 53 (70)
T d1z6ra1 6 NAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQELE 53 (70)
T ss_dssp HHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 999999999994992899999998949999999999999889978608
No 48
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=97.38 E-value=0.00059 Score=44.26 Aligned_cols=61 Identities=25% Similarity=0.205 Sum_probs=50.2
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 9999997088999889999865890114589999998413212567432230000017888999999999
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
.+|..+ .+|++.+.|....+++...+++.++.|+++|||+. +...+.+|++|.++++....
T Consensus 10 DIL~~~--~~g~~kT~i~~~aNLs~~~~~kyl~~L~~~GLI~~-------~~~~Y~iT~kG~~~L~~~~~ 70 (90)
T d1r7ja_ 10 AILEAC--KSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQ-------EGKQYMLTKKGEELLEDIRK 70 (90)
T ss_dssp HHHHHH--TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-------ETTEEEECHHHHHHHHHHHH
T ss_pred HHHHHH--HCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCEEE-------CCCEEEECCCHHHHHHHHHH
T ss_conf 999997--67998207789719999999999999998889663-------69878988218999999999
No 49
>d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=97.29 E-value=0.001 Score=42.66 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99989999999970889998899998658901145899999984132125674322300000178889999999999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIE 117 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~~ 117 (148)
++..++.++..+.+.| +.+.-|+.+++++|++|+.|+.||+.==+.- -++....+.+|+.|..++..+......
T Consensus 1 Mdl~~L~~f~~v~e~g--s~~~AA~~L~isq~avs~~i~~LE~~lg~~L----f~R~~~~~~lT~~G~~l~~~a~~il~~ 74 (89)
T d1ixca1 1 MEFRQLKYFIAVAEAG--NMAAAAKRLHVSQPPITRQMQALEADLGVVL----LERSHRGIELTAAGHAFLEDARRILEL 74 (89)
T ss_dssp CCHHHHHHHHHHHHHS--SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC----BC-----CCBCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHCCCCEE----EEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9889999999999809--9999999858992788999999986379600----575699647537699999999999999
Q ss_pred HHH
Q ss_conf 999
Q T0617 118 REK 120 (148)
Q Consensus 118 ~~~ 120 (148)
+.+
T Consensus 75 ~~~ 77 (89)
T d1ixca1 75 AGR 77 (89)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 50
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=97.15 E-value=0.00074 Score=43.59 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 89998999999997088999889999865890114589999998413212567432230000017888999999999999
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAI 116 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~ 116 (148)
.++..++.++..+.+.| +.+.-|+.++++.+++|+.|+.||+.==.. --++....+.+|+.|+.++..+.....
T Consensus 5 ~ldl~~L~~f~~v~~~g--s~t~AA~~l~isq~avs~~l~~lE~~~g~~----Lf~R~~~~~~lT~~g~~l~~~~~~~l~ 78 (89)
T d2esna1 5 RLDLNLLLVFDALYRHR--NVGTAASELAISASAFSHALGRLRQGLDDE----LFLRQGNRMQPTQRAEHLAAAVAAALR 78 (89)
T ss_dssp TSCTTHHHHHHHHHHHS--SHHHHHHHHTCCHHHHHHHHHHHHHHHTSC----CEEEETTEEEECHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--CHHHHHHHHCCCCCHHHHHHHHHHHCCCCE----EEEECCCCEEECHHHHHHHHHHHHHHH
T ss_conf 58999999999999809--999999987799847559999998657730----078779944388999999999999999
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999985799
Q T0617 117 EREKQLLEEFE 127 (148)
Q Consensus 117 ~~~~~~~~~l~ 127 (148)
.+.+. ++.++
T Consensus 79 ~l~~~-~~e~~ 88 (89)
T d2esna1 79 ALGEG-LEEWR 88 (89)
T ss_dssp HHHHH-TGGGS
T ss_pred HHHHH-HHHCC
T ss_conf 99999-98739
No 51
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=97.13 E-value=0.00046 Score=44.99 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 999899999999708899988999986589011458999999841321256
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
|...+..+|..|..++..+.++||+.+|+++++|.+-+++|++.|+|.+..
T Consensus 3 lD~~D~~IL~~L~~n~r~s~~~iA~~lgis~~tv~~Ri~~L~~~giI~~~~ 53 (63)
T d2cfxa1 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYT 53 (63)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 789999999999983999999999998968789999999999889856577
No 52
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=97.09 E-value=0.0011 Score=42.35 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHH-----HCCCCCHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHH
Q ss_conf 9998999999997-----088999889999865--890114589999998413212567432230000017888999999
Q T0617 38 IGMTEWRIISVLS-----SASDCSVQKISDILG--LDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
Q Consensus 38 lt~~q~~iL~~l~-----~~~~~t~~eLa~~l~--i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~ 110 (148)
||..|-.||..|. ...|++.++|++.++ +++++|...++.|+++|||++ +...-+| ..|++|-+++-+
T Consensus 2 Lt~Rq~~IL~~Ive~y~~~g~Pv~s~~i~~~~~l~~S~aTIRn~m~~LE~~G~l~~-~h~s~Gr----iPT~~g~r~yv~ 76 (87)
T d1stza1 2 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQ-PHTSAGR----IPTDKGLRFYYE 76 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEEC-CSSCSCB----EECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-CCCCCCC----CCCHHHHHHHHH
T ss_conf 49899999999999999809846799999870889898999999999998786248-8877877----605889999999
No 53
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=96.99 E-value=0.00085 Score=43.20 Aligned_cols=52 Identities=23% Similarity=0.409 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9998999999997088999889999865890114589999998413212567
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
|...++.+|..|..++..+..+||+.++++.++|.+-+++|++.|.|.+..-
T Consensus 1 lD~~D~~Il~~L~~n~r~s~~eiA~~l~ls~~~v~~Ri~~L~~~giI~~~~~ 52 (60)
T d2cyya1 1 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTA 52 (60)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9889999999999828999999999989399999999999998897475777
No 54
>d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=96.99 E-value=0.002 Score=40.68 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH---HHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 99989999999970889998899998658901145899999984---132125674322300000178889999999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK---KYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~---gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
+++.+..++..|.+.| +.+.-|+.+++++|++|+.|+.||+. -++.|.+... ...-+.||+.|++++..+...
T Consensus 18 ~~~~~l~~~~ai~~~g--s~~~AA~~l~~sq~avs~~i~~lE~~lg~~Lf~R~~~g~--~~~~~~LT~~G~~ll~~a~~i 93 (127)
T d1b9ma1 18 ADPRRISLLKHIALSG--SISQGAKDAGISYKSAWDAINEMNQLSEHILVERATGGK--GGGGAVLTRYGQRLIQLYDLL 93 (127)
T ss_dssp ECHHHHHHHHHHHHHS--SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEECCCC-------EEECHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCC--CCCCHHHHHHHHHHHHHHHHH
T ss_conf 3999999999999959--958999881587629999999999981981799626876--442001128999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q T0617 115 AIEREK 120 (148)
Q Consensus 115 ~~~~~~ 120 (148)
.....+
T Consensus 94 ~~~~~~ 99 (127)
T d1b9ma1 94 AQIQQK 99 (127)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999888
No 55
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=96.98 E-value=0.0008 Score=43.35 Aligned_cols=51 Identities=29% Similarity=0.371 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 998999999997088999889999865890114589999998413212567
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
...+..+|..|..+|..+..+||+.+|++++++.+-+++|++.|+|.+...
T Consensus 2 D~~D~kIl~~L~~n~r~s~~~lA~~~gls~~~v~~Ri~~L~~~giI~~~~~ 52 (60)
T d1i1ga1 2 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTI 52 (60)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCCC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 889999999998849999999999989299999999999998897576887
No 56
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=96.97 E-value=0.00031 Score=46.12 Aligned_cols=47 Identities=26% Similarity=0.295 Sum_probs=40.2
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999997088999889999865890114589999998413212567432
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
||..|.+ +|+|..|||+.+++++++|+++++.|++.|+|........
T Consensus 4 Il~~i~~-~pisr~eLa~~~gls~~TVs~~v~~L~~~GlV~e~~~~~~ 50 (62)
T d2hoea1 4 ILKRIMK-SPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKDSPK 50 (62)
T ss_dssp SHHHHHH-SCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEECCC-
T ss_pred HHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf 9999997-8969999999989399999999999998898787798899
No 57
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=96.92 E-value=0.001 Score=42.70 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 8999899999999708899988999986589011458999999841321256
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~ 88 (148)
-+...+..+|..|..++..+..+||+.++++++++.+-+++|++.|.|.+..
T Consensus 2 ~lD~~D~~IL~~L~~~~r~s~~eiA~~l~ls~~~v~~Ri~rL~~~GiI~~~~ 53 (63)
T d2cg4a1 2 LIDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGAR 53 (63)
T ss_dssp CCCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9888999999999983899999999998939999999999999889857688
No 58
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} SCOP: d1biba1 d2ewna1 d1hxda1
Probab=96.87 E-value=0.00092 Score=42.95 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9989999999970889998899998658901145899999984132
Q T0617 39 GMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYI 84 (148)
Q Consensus 39 t~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli 84 (148)
+..++.+|..|.+++.++..+||+.+++|++||.+-++.|++.|++
T Consensus 4 ~~~~~~IL~~L~~~~~~s~~eLa~~l~vS~~Tv~r~i~~L~~~G~~ 49 (63)
T d1biaa1 4 NTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVD 49 (63)
T ss_dssp CHHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCE
T ss_conf 0688999999982898377899987099983578999999876981
No 59
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=96.75 E-value=0.0013 Score=41.87 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999899999999708899988999986589011458999999841321
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~ 85 (148)
.+..++.+|..|.+.+..+..+||+.+++|+++|.+-|+.|++.|+..
T Consensus 3 ~~~~~~~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~i~~L~~~G~~I 50 (63)
T d1biaa1 3 DNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (63)
T ss_dssp CCHHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCE
T ss_conf 647999999999978958799999998939999999999999879937
No 60
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=96.67 E-value=0.0018 Score=41.06 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=51.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 9999999970889998899998658901145899999984132125674322300000178889999
Q T0617 42 EWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 42 q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
..++|.+|..+++++..+||+.++++++.+.++++.|.+.|+|+..+.+.-+ + +.-.|+-..++
T Consensus 6 Av~~L~~la~~~~~ss~~IA~~~~~~~~~v~kIl~~L~~aglV~s~rG~~GG--y-Lar~p~~Itl~ 69 (127)
T d1xd7a_ 6 AIHILSLISMDEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGA--S-LKKDPADISLL 69 (127)
T ss_dssp HHHHHHHHHTCSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSC--E-ESSCGGGCBHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--C-CCCCHHHCCHH
T ss_conf 9999999864999899999988695999999999999980765126899985--1-06897869299
No 61
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=96.19 E-value=0.0061 Score=37.47 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHC
Q ss_conf 899988999986589-0114589999998413212
Q T0617 53 SDCSVQKISDILGLD-KAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 53 ~~~t~~eLa~~l~i~-~~~vs~~i~~L~~~gli~r 86 (148)
+++|+.|||..+|++ +.+|||+++.|.+.|+|+.
T Consensus 30 ~~lTqeeLA~~lG~s~ReTVsR~L~~L~~~GlI~~ 64 (100)
T d2bgca1 30 DNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY 64 (100)
T ss_dssp SCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 66699999988387448899999999987978897
No 62
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=95.75 E-value=0.0083 Score=36.59 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 8999889999865890114589999998413212
Q T0617 53 SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 53 ~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
-++|+.+||..+|+++.+||+.+++|++.|+|+.
T Consensus 28 ~~lt~~eLA~~~G~sretvsr~L~~l~~~glI~~ 61 (81)
T d2gaua1 28 IYLSREELATLSNMTVSNAIRTLSTFVSERMLAL 61 (81)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 0689999999979989999999999998997896
No 63
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=95.63 E-value=0.0037 Score=38.93 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9998899998658901145899999984132125
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
++|+.+||..+|+++.+|||.++.|++.|+|+..
T Consensus 29 ~lt~~~lA~~~G~sRetvsr~L~~l~~~glI~~~ 62 (69)
T d1i5za1 29 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 62 (69)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 7899999989799799999999999988988976
No 64
>d1zara1 a.4.5.56 (A:2-90) Rio2 serine protein kinase N-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=95.52 E-value=0.02 Score=34.10 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHH----CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHH
Q ss_conf 899989999999970----88999889999865890114589999998413212567432230000017888999999
Q T0617 37 GIGMTEWRIISVLSS----ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
Q Consensus 37 glt~~q~~iL~~l~~----~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~ 110 (148)
-|+..+|++|..|.. ++=.+...|+...+++.+.+...+++|.+.++|.+...+-|+ +.||-.|-++++-
T Consensus 8 ~L~~~dfRvL~aiE~gmrnhE~VP~~lI~~~a~l~~~~~~~~L~~L~k~kLv~~~~~~Y~G----YrLT~~GYD~LAL 81 (89)
T d1zara1 8 KMGKHSWRIMDAIFKNLWDYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQNRQKDYEG----STFTFIGLSLYSL 81 (89)
T ss_dssp TCCHHHHHHHHHHHTTTTTCSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSSSCE----EEECHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCE----EEEECCCHHHHHH
T ss_conf 7488789999999952356762549999999788887899999999876884235898632----8862157479999
No 65
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=95.49 E-value=0.0059 Score=37.58 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9998899998658901145899999984132125
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
++|..+||..+|+++.++++.++.|.+.|+|+..
T Consensus 30 ~~t~~eiA~~lG~sretvsr~l~~l~~~g~I~~~ 63 (80)
T d1ft9a1 30 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQ 63 (80)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 7899999999798899999999999988988978
No 66
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=95.45 E-value=0.0049 Score=38.14 Aligned_cols=33 Identities=18% Similarity=0.397 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 999889999865890114589999998413212
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
++++.+||..+|+++.++||.++.|++.|+|+.
T Consensus 27 ~lt~~elA~~lg~sr~tvsr~l~~l~~~g~I~~ 59 (73)
T d1zyba1 27 KVKMDDLARCLDDTRLNISKTLNELQDNGLIEL 59 (73)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEE
T ss_pred ECCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 069999998979889999999999998898996
No 67
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=95.37 E-value=0.012 Score=35.48 Aligned_cols=64 Identities=13% Similarity=0.235 Sum_probs=47.8
Q ss_pred HHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 999999997088--9998899998658901145899999984132125674322300000178889999
Q T0617 42 EWRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 42 q~~iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
-.++|.++..++ +++..+||+.++++++.+.++++.|.+.|||...+.+ .+ . .+.-.|+-..+.
T Consensus 9 Av~~L~~la~~~~~~vss~~IA~~~~i~~~~l~kil~~L~~aGlv~S~rG~-GG-~-~L~~~p~~ItL~ 74 (138)
T d1ylfa1 9 AVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP-GG-A-GLLKDLHEITLL 74 (138)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CC-E-EESSCGGGCBHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC-CC-C-EECCCHHHCCHH
T ss_conf 999999998589986849999999796999999999999888986853499-98-3-314787446899
No 68
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=95.28 E-value=0.0071 Score=37.04 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 999889999865890114589999998413212
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
++|+.+||..+|+++.+|++.+++|.+.|+|+.
T Consensus 30 ~lt~~elA~~~g~sretvsr~l~~l~~~glI~~ 62 (80)
T d3e5ua1 30 PLSQKSIGEITGVHHVTVSRVLASLKRENILDK 62 (80)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 799999999988778899999999998996996
No 69
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=94.99 E-value=0.02 Score=34.00 Aligned_cols=46 Identities=15% Similarity=0.269 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHC
Q ss_conf 899999999708-8999889999865890114589999998413-212
Q T0617 41 TEWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKY-IEV 86 (148)
Q Consensus 41 ~q~~iL~~l~~~-~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gl-i~r 86 (148)
.+..+|..|.++ ++++..+||+.+++|+.||-+-++.|++.|+ |..
T Consensus 8 R~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~L~~~G~~I~~ 55 (65)
T d1j5ya1 8 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 55 (65)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999985997859999999798999999999999987992799
No 70
>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}
Probab=94.96 E-value=0.03 Score=32.83 Aligned_cols=74 Identities=24% Similarity=0.282 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHH
Q ss_conf 8999899999999708------8999889999865890114589999998413212567432230000017888999999
Q T0617 37 GIGMTEWRIISVLSSA------SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
Q Consensus 37 glt~~q~~iL~~l~~~------~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~ 110 (148)
||.+.-..+|..|++. ++.+...|+++-++.-|+.-|++-.|.+.|++...-+. |+|. .-.||+.|+++..+
T Consensus 1 glDP~lvavL~~L~eA~~e~~g~~WSLaklsKra~~PMS~LRR~LTqL~~aGl~~t~~~e-dG~G-~A~Lt~~G~~lca~ 78 (81)
T d2obpa1 1 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEA-DGRG-HASLTQEGAALAAQ 78 (81)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECT-TSCE-EEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECC-CCCC-EEECCHHHHHHHHH
T ss_conf 987699999999999831689997638898866179689999999998506845566535-7753-11104879999998
Q ss_pred HH
Q ss_conf 99
Q T0617 111 AS 112 (148)
Q Consensus 111 ~~ 112 (148)
+.
T Consensus 79 LF 80 (81)
T d2obpa1 79 LF 80 (81)
T ss_dssp HC
T ss_pred HC
T ss_conf 77
No 71
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.92 E-value=0.021 Score=33.94 Aligned_cols=56 Identities=11% Similarity=0.277 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHC---CCCCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8999899999999708---899988999986-5890114589999998413212567432
Q T0617 37 GIGMTEWRIISVLSSA---SDCSVQKISDIL-GLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 37 glt~~q~~iL~~l~~~---~~~t~~eLa~~l-~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
||++.|-.|+.+|... .|+++.+|+..+ +++.+.|...++.|...|+|-.+.|...
T Consensus 3 GLs~~q~~V~~~i~s~~~~eGi~~~el~~~l~~~~~~~i~~aid~L~~eG~IYsTiDddH 62 (69)
T d1dpua_ 3 GLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDH 62 (69)
T ss_dssp CSCHHHHHHHHHHHHCCCTTTEEHHHHHHHSTTSCHHHHHHHHHHHHHTTSEEECSSTTE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCCCCH
T ss_conf 898999999999983888568389999988169999999999999983785551036541
No 72
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=94.86 E-value=0.009 Score=36.37 Aligned_cols=33 Identities=15% Similarity=0.391 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 999889999865890114589999998413212
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
++|+.+||..+|+++.++++.++.|.+.|+|+.
T Consensus 29 ~lt~~elA~~lg~sr~tv~r~L~~l~~~gli~~ 61 (82)
T d2zcwa1 29 KATHDELAAAVGSVRETVTKVIGELAREGYIRS 61 (82)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 589999999989889999999999998998896
No 73
>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.80 E-value=0.012 Score=35.60 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 89998999999997088--99988999986589011458999999841321256743223000001
Q T0617 37 GIGMTEWRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINL 100 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~L 100 (148)
|++..|..|...|...| |+...+|....++..+.+.+.++.|+.++||.-..+-..+..+.+.|
T Consensus 10 ~l~~~E~lVY~~I~~ag~~GIW~~dir~ktnL~~~~l~K~LK~Lesk~lIK~VksV~~~~rK~YmL 75 (78)
T d2dk5a1 10 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYML 75 (78)
T ss_dssp CSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEE
T ss_conf 799899999999997165662499999873999899999999997368715441457887179973
No 74
>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=94.46 E-value=0.069 Score=30.46 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=51.0
Q ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHH
Q ss_conf 99999970-8899988999986589011458999999841321256743223000001788899999999
Q T0617 44 RIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
Q Consensus 44 ~iL~~l~~-~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 112 (148)
.++..+.. +.|+--+.||+.++++-..+-..++.|-+.|+|+..+. -..+|++|++++.++.
T Consensus 6 ~vl~~l~ll~qPiGRr~La~~L~l~Er~vRte~~~Lk~~gLI~~~~~-------Gm~lTe~G~~~l~~L~ 68 (69)
T d2p8ta1 6 DVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQR-------GHFLTLKGKEIRDKLL 68 (69)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---------CEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECC-------CCEECHHHHHHHHHHH
T ss_conf 99999999718845899999829819999999999988898666079-------8778784899999973
No 75
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=94.45 E-value=0.11 Score=29.13 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=49.3
Q ss_pred HHHCC--CCHHHHHHHHHHHHC-C-CCCHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 98728--999899999999708-8-99988999986-----58901145899999984132125674322
Q T0617 33 TQKFG--IGMTEWRIISVLSSA-S-DCSVQKISDIL-----GLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 33 ~~~~g--lt~~q~~iL~~l~~~-~-~~t~~eLa~~l-----~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
+++.| +|++...||..|... + +.|+.+|-+.+ .++.+||-|.++.|++.|+|.+...+.+.
T Consensus 7 Lr~~GlR~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli~~~~~~~~~ 76 (134)
T d1mzba_ 7 LRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGH 76 (134)
T ss_dssp HHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSS
T ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_conf 9986999798999999999848999999999999999738884479999999999741378888606871
No 76
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]}
Probab=94.33 E-value=0.075 Score=30.21 Aligned_cols=69 Identities=12% Similarity=0.226 Sum_probs=45.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCC--------------CCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHH
Q ss_conf 999999708899988999986589--------------011458999999841321256743223000001788899999
Q T0617 44 RIISVLSSASDCSVQKISDILGLD--------------KAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~--------------~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~ 109 (148)
.+|..|+.+||+-+..|....|-. .+-+-.+++.||+.|||++.+ ..+| .||++|+..++
T Consensus 56 SilRkiY~~gpvGv~~Lr~~YGg~k~rG~~P~h~~~~Sg~iiR~~LQqLE~~glVek~~--~~GR----~lT~~G~~~LD 129 (149)
T d2v7fa1 56 SILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP--GKGR----VITPKGRSFLD 129 (149)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEET--TTEE----EECHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECC--CCCC----EECHHHHHHHH
T ss_conf 99999987089638899999788988999998767776389999999998688866769--9994----77888999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q T0617 110 VASDFAIER 118 (148)
Q Consensus 110 ~~~~~~~~~ 118 (148)
++......-
T Consensus 130 ~iA~~v~~~ 138 (149)
T d2v7fa1 130 KIATELKKE 138 (149)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 77
>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.24 E-value=0.016 Score=34.61 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHH
Q ss_conf 99989999999970889998899998658901-1458999999841321256743223000001788899
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKA-AVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQE 106 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~-~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~ 106 (148)
++..+-.|+.+|...|+.+.-+||..+|++++ -|.+.+-.|+++|.|.+...... .-.||+++++
T Consensus 3 ~~d~eekI~~~L~~~g~~~Al~iak~lGl~kakeVN~~LY~L~k~g~v~k~~~tPP----~W~L~~~~~E 68 (73)
T d1xmka1 3 MAEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPP----IWHLTDKKRE 68 (73)
T ss_dssp HHHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSC----EEEECHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCCC----CEEEECCHHH
T ss_conf 67899999999997598439999999499707887599999998778012799899----5453202105
No 78
>d1t6sa2 a.4.5.60 (A:86-162) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=94.10 E-value=0.023 Score=33.69 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC-CCCCCCCEECCCCCHHHHHHH
Q ss_conf 99989999999970889998899998658901145899999984132125-674322300000178889999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN-GHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~-~~~~D~R~~~l~LT~~G~~~~ 108 (148)
|+.....+|.+|+-+.|+|..+|.+.-|++.+ ..++.|..+|||+.. ..+..+|...+..|++-.+.+
T Consensus 7 Ls~aalEtLaiIAY~QPiTr~eI~~IRGv~s~---~~l~~L~~~glI~~~gr~~~pGrp~ly~tT~~Fl~~F 75 (77)
T d1t6sa2 7 LSRSMLEVLAVVAWHQPVTKGEIQQIRGASPD---YSIDRLLARGLIEVRGRADSPGRPLQYGTTEVFLDLF 75 (77)
T ss_dssp HHHHHHHHHHHHHHHCSEEHHHHHHHHTCCCC---SHHHHHHHTTSEEEEEECSSTTCCEEEEECHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCH---HHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHC
T ss_conf 48999999999998398479999875688917---8999999999999818788999844302259999872
No 79
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=93.96 E-value=0.12 Score=28.88 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999984
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
+||+.|..||..+.. |.+.++||..++++..||...+.++-++
T Consensus 12 ~LT~rE~~vl~~l~~--G~s~~eIA~~l~iS~~TV~~~~~~i~~K 54 (70)
T d1yioa1 12 SLTGREQQVLQLTIR--GLMNKQIAGELGIAEVTVKVHRHNIMQK 54 (70)
T ss_dssp TSCHHHHHHHHHHTT--TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 089999999999982--8999999989797999999999999998
No 80
>d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
Probab=93.73 E-value=0.053 Score=31.22 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=45.4
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999999970889998899998658901145899999984132125674322
Q T0617 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
-.||.++..++++..+|||++++++.-.+-.-+-.|++.|.|.|.|-....
T Consensus 3 n~Il~fl~~~~~~~T~EIAea~gvsaYQARyYL~~Lekegki~RsPlRrGa 53 (73)
T d2htja1 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGM 53 (73)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 089999884489637899999633899999999998771570148454005
No 81
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=93.69 E-value=0.079 Score=30.06 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999984
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
.||+.|..||..+.. |.+..+||+.++++..||...+.++-++
T Consensus 6 ~LT~rE~~vl~ll~~--G~s~~eIA~~l~iS~~TV~~~~~~i~~K 48 (67)
T d1a04a1 6 QLTPRERDILKLIAQ--GLPNKMIARRLDITESTVKVHVKHMLKK 48 (67)
T ss_dssp GSCHHHHHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 279999999999996--7998999999788888999999999998
No 82
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=93.60 E-value=0.027 Score=33.18 Aligned_cols=36 Identities=8% Similarity=0.424 Sum_probs=32.7
Q ss_pred C-CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9-98899998658901145899999984132125674
Q T0617 55 C-SVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 55 ~-t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
+ +..+||+.+++++++|.+.++.|++.|||.+.+..
T Consensus 27 LPs~~eLa~~~~vSr~tvr~Al~~L~~~G~i~~~~g~ 63 (74)
T d1hw1a1 27 LPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGK 63 (74)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 8349999999897989999999999988918998084
No 83
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=93.28 E-value=0.068 Score=30.52 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHCC----CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 89998999999997088----9998899998658901145899999984132125
Q T0617 37 GIGMTEWRIISVLSSAS----DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~----~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
.||+.+-.|-.+|-.++ ..+.++||+..++++++|+|.+++|-=.||-+-+
T Consensus 15 ~Ls~~e~~ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e~k 69 (83)
T d2o3fa1 15 KLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLK 69 (83)
T ss_dssp GSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHH
T ss_pred HCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 5789999999999829999988319999999798998999999995899899999
No 84
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}
Probab=93.27 E-value=0.047 Score=31.59 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=45.2
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHH
Q ss_conf 999997088999889999865890114589999998413212567432230000017888999
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQEL 107 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~ 107 (148)
+.-.|. .||.|..+||..+++++..+.++++-|...|++++..+. ...+.+|+.|.-+
T Consensus 32 ifd~L~-~gp~t~~eLA~~~g~~~~~l~rLlr~L~a~gll~~~~d~----~~~~~~t~~g~lL 89 (92)
T d1qzza1 32 LVDHLL-AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQ----GRPLRPTRLGMLL 89 (92)
T ss_dssp HHHHHH-TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-----CCCCEECTTGGGG
T ss_pred CHHHHH-CCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCC----CCEECCCHHHHHC
T ss_conf 348880-899999999988783916999999999877983640698----7335353888860
No 85
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=93.16 E-value=0.034 Score=32.49 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=33.3
Q ss_pred CC-CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99-98899998658901145899999984132125674
Q T0617 54 DC-SVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 54 ~~-t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
.+ +..+||+.+++++++|.+.++.|+..|+|++.+..
T Consensus 21 ~LPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 58 (78)
T d3bwga1 21 KLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGS 58 (78)
T ss_dssp BCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 99379999999887989999999999988938997185
No 86
>d1bjaa_ a.4.5.9 (A:) Transcription factor MotA, activation domain {Bacteriophage T4 [TaxId: 10665]}
Probab=92.96 E-value=0.25 Score=26.74 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 289998999999997088999889999-8658901145899999984132125674322300000178889999999999
Q T0617 36 FGIGMTEWRIISVLSSASDCSVQKISD-ILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~~t~~eLa~-~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
-.|+...-.++..+..+.=+|..++++ .-....+.+..-|.-|.++|||++.- |+ +-.|..|..++.++...
T Consensus 12 ~~lnekta~I~i~iaKk~FiTa~ev~e~~~~~~~avvnSNIGVliKKgliEKSG---DG----~v~T~e~~~il~~AA~l 84 (95)
T d1bjaa_ 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVEKSG---DG----LIITGEAQDIISNAATL 84 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEEEET---TE----EEECHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCEEEEEECCHHHCCC---CC----EEEECCHHHHHHHHHHH
T ss_conf 123000357889888750333999998768851201214500445303110158---81----68606288999999999
Q ss_pred HHH
Q ss_conf 999
Q T0617 115 AIE 117 (148)
Q Consensus 115 ~~~ 117 (148)
+.+
T Consensus 85 ~a~ 87 (95)
T d1bjaa_ 85 YAQ 87 (95)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 875
No 87
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=92.58 E-value=0.04 Score=32.08 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9998899998658901145899999984132125674
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
.++..+||+.+++++++|.+.++.|++.|+|++.+..
T Consensus 25 ~l~~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~~~ 61 (69)
T d2hs5a1 25 RLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNR 61 (69)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 6699999999897989999999999988968997597
No 88
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=92.49 E-value=0.15 Score=28.18 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999984
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
-||+.|..+|..+. .|.+.+|||+.++++..||...+.++-++
T Consensus 4 ~LT~rE~~vl~l~~--~G~s~~eIA~~L~is~~TV~~~~~~i~~K 46 (67)
T d1fsea_ 4 LLTKREREVFELLV--QDKTTKEIASELFISEKTVRNHISNAMQK 46 (67)
T ss_dssp CCCHHHHHHHHHHT--TTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 88899999999998--36989999999888888999999999998
No 89
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=92.21 E-value=0.032 Score=32.70 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=37.8
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99970889998899998658901145899999984132125674
Q T0617 47 SVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 47 ~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
..|...+..|..+||+.+|+++..|.+.+=+|+++|.|.+....
T Consensus 17 ~~L~~~~~~tA~~LAk~Lg~~Kk~VNr~LY~L~~~G~v~~~~~t 60 (70)
T d1sfua_ 17 LSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSN 60 (70)
T ss_dssp HTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred HHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCC
T ss_conf 74587777049999999598898988999999987985127996
No 90
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=92.11 E-value=0.18 Score=27.64 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 2899989999999970889998899998658901145899999984
Q T0617 36 FGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
..||+.|..+|..+.. |.+.+|||+.++++..||...++++-++
T Consensus 3 ~~Lt~rE~~vl~l~~~--G~s~~eIA~~l~iS~~TV~~~~~~i~~K 46 (65)
T d1l3la1 3 AWLDPKEATYLRWIAV--GKTMEEIADVEGVKYNSVRVKLREAMKR 46 (65)
T ss_dssp CCCCHHHHHHHHHHTT--TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 4048999999999993--6988899999788899999999999998
No 91
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=91.93 E-value=0.051 Score=31.36 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=44.8
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 9999970889998899998658901145899999984132125674322300000178889999
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
+.-.| ..||.|..|||+.+++++..+.|+++-|...|+++...+ -.+.+|+.|..+.
T Consensus 26 ifd~l-~~gp~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e~~~------~~y~lt~~s~~L~ 82 (85)
T d1tw3a1 26 LVDHI-LAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAP------GEFVPTEVGELLA 82 (85)
T ss_dssp HHHHH-HTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEET------TEEEECTTGGGGS
T ss_pred CHHHH-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC------CEEECCHHHHHHH
T ss_conf 28776-549999999998849292699999999987797574699------9385699899863
No 92
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.69 E-value=0.093 Score=29.59 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 899989999999970889998899998658901145899999984132125674322
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
.++.-|..||....+.+.+|..+|+..++++...+.+.+..|.+.+++.....+.+.
T Consensus 192 ~vs~~Qa~ILllFN~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~kll~~~~~~~~~ 248 (276)
T d1ldja3 192 QASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANV 248 (276)
T ss_dssp ECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEECSCTTCCT
T ss_pred EECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCC
T ss_conf 878999999986157776579999998791999999999999868977853799886
No 93
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=91.48 E-value=0.082 Score=29.96 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=50.7
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHH
Q ss_conf 99999970889998899998658901145899999984132125674322300000178889
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQ 105 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~ 105 (148)
..+.+|..+.-...-+||..+++..+.+-.-|+.|++.|-+.-..|. |.+.+++||.|-
T Consensus 11 ~FI~~Ik~~Kvv~LedLAa~F~lktqd~i~RIq~Le~~g~ltGViDD---RGKfIyIS~s~~ 69 (72)
T d1wi9a_ 11 EFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDD---RGKFIYITPSGP 69 (72)
T ss_dssp HHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECT---TCCEEECCCSSC
T ss_pred HHHHHHHHCCEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECC---CCCEEEECCCCC
T ss_conf 99999998787639999988299679999999999987986557858---988899737999
No 94
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1u6ga3
Probab=91.47 E-value=0.093 Score=29.61 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 89998999999997088999889999865890114589999998413212567432
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
.++..|..||....+++.+|..+|+..++++...+.+.+..|.+.+++.....+.+
T Consensus 192 ~~s~~Qa~ILllFN~~~~lt~~~l~~~~~i~~~~l~~~L~~L~~~kil~~~~~~~~ 247 (276)
T d1ldja3 192 QASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENAN 247 (276)
T ss_dssp ECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEECSCTTCC
T ss_pred EECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCC
T ss_conf 87279999999862899747789998858899899999888751882664267886
No 95
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=90.68 E-value=0.34 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 899989999999970889998899998658901145899999984
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
.||+.|+.||..+.. |.+.++||..++++..||...++++-++
T Consensus 22 ~LT~rE~~vl~ll~~--G~s~~eIA~~l~iS~~TV~~~~~~i~~K 64 (87)
T d1p4wa_ 22 RLSPKESEVLRLFAE--GFLVTEIAKKLNRSIKTISSQKKSAMMK 64 (87)
T ss_dssp SCCHHHHHHHHHHHH--TCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 899999999999992--8999999878697999999999999998
No 96
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.48 E-value=0.16 Score=28.06 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=33.9
Q ss_pred CCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 899989-9999999708899988999986589011458999999
Q T0617 37 GIGMTE-WRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 37 glt~~q-~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
-||..+ ..++..+...|.+.+.|||..+|+.++||+.+++.=+
T Consensus 7 ~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKnK~ 50 (66)
T d1hlva1 7 QLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKR 50 (66)
T ss_dssp CCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 37799999999999808721099999995997647999998799
No 97
>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=90.45 E-value=0.19 Score=27.49 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=37.6
Q ss_pred CHHHHHHHH---CC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 988999986---58-90114589999998413212567432230000017888999999999
Q T0617 56 SVQKISDIL---GL-DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 56 t~~eLa~~l---~i-~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
|...|-..| || +++|-+.+|..|.++|||++. ...+.+|+.|..+++-+..
T Consensus 459 TEasLI~~ME~~GIGTpATrA~IIe~L~~R~Yv~~k-------~~~l~pT~~G~~li~~L~~ 513 (556)
T d1gkub3 459 TQSEIIQMMKERGIGRPSTYATIVDRLFMRNYVVEK-------YGRMIPTKLGIDVFRFLVR 513 (556)
T ss_dssp CHHHHHHHHHHHTCCCTTTHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEE-------CCEEEECHHHHHHHHHHHH
T ss_conf 989999999858999611579999989738959944-------9988151679999999997
No 98
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=90.43 E-value=0.36 Score=25.69 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9998999999997088999889999865890114589999998
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
|++.|-.++..- ..++++..|||+.+|++.++|...+.+-.+
T Consensus 17 Lp~~qR~v~~L~-y~~~ls~~EIA~~lgiS~~aV~~~l~RA~~ 58 (106)
T d1s7oa_ 17 LTDKQMNYIELY-YADDYSLAEIADEFGVSRQAVYDNIKRTEK 58 (106)
T ss_dssp SCHHHHHHHHHH-HHTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999998989-991999999999989699999999999999
No 99
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=90.42 E-value=0.36 Score=25.71 Aligned_cols=70 Identities=16% Similarity=0.036 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHH
Q ss_conf 99989999999970889998899998658901145899999984132125674322300000178889999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVA 111 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~ 111 (148)
|+...-.-+..+.+ .|++..++|+.+++++++|++++++..+.|-+.-.+...++.. .+|+.-.+.+...
T Consensus 17 Ls~dlR~rIv~~~~-~G~s~r~iA~~~~VS~~tV~k~l~r~~~~G~~~~~~~~~~rpr---~~t~~~~~~I~~~ 86 (123)
T d1pdnc_ 17 LPNNIRLKIVEMAA-DGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---IATPEIENRIEEY 86 (123)
T ss_dssp CCHHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCC---SSCSTHHHHHHHT
T ss_pred CCHHHHHHHHHHHH-HCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCHHHHHHHHHH
T ss_conf 98999999999998-0489999999989699999999999871587676777899998---7788999999999
No 100
>d3bz6a2 a.4.5.75 (A:97-180) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=89.65 E-value=0.47 Score=24.94 Aligned_cols=63 Identities=10% Similarity=0.095 Sum_probs=50.6
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 987289998999999997088999889999865-----890114589999998413212567432230
Q T0617 33 TQKFGIGMTEWRIISVLSSASDCSVQKISDILG-----LDKAAVSRTVKKLEEKKYIEVNGHSEDKRT 95 (148)
Q Consensus 33 ~~~~glt~~q~~iL~~l~~~~~~t~~eLa~~l~-----i~~~~vs~~i~~L~~~gli~r~~~~~D~R~ 95 (148)
.+.++++..|..+|..+.-.||.|+.||-.+.+ -+-..|-..++.|..++||.+-+....+|.
T Consensus 2 d~~L~l~~~~~All~~LlLRGpQT~GELRtRs~Rm~~F~dv~~Ve~~L~~L~~~~lV~~Lpr~pG~RE 69 (84)
T d3bz6a2 2 DKGLELVPAQVILTGLLLLRGPQTVSELLTRSNRMHDFEDSEQVVHQLERLIARGLATLVPRQSGQRE 69 (84)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCSBCHHHHHHHHTTTSCCSSHHHHHHHHHHHHHHTSEEEECCCTTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCH
T ss_conf 63337887899999999963789768999878606656899999999998704885100489999641
No 101
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=89.65 E-value=0.5 Score=24.75 Aligned_cols=65 Identities=14% Similarity=0.272 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 899989999999970---88999889999865890114589999-9984132125674322300000178889999
Q T0617 37 GIGMTEWRIISVLSS---ASDCSVQKISDILGLDKAAVSRTVKK-LEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 37 glt~~q~~iL~~l~~---~~~~t~~eLa~~l~i~~~~vs~~i~~-L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
||...+..+|..|.+ .||.-...||..++.++.|+--.+.. |.+.|||.|.+. +| .+|++|.+.+
T Consensus 2 GLd~~Dr~yL~~l~~~f~ggPvGl~tlAa~l~e~~~TiEdviEPyLiq~G~i~RTpR---GR----~~T~~~~~hl 70 (75)
T d1in4a1 2 GLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR---GR----IVTEKAYKHL 70 (75)
T ss_dssp CCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETT---EE----EECHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC---HH----HHHHHHHHHC
T ss_conf 988999999999999838998749999999868751899983479999607754896---38----7689999991
No 102
>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=89.61 E-value=0.34 Score=25.85 Aligned_cols=52 Identities=13% Similarity=0.323 Sum_probs=38.9
Q ss_pred CCHHHHHHHH---CCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 9988999986---589-0114589999998413212567432230000017888999999999
Q T0617 55 CSVQKISDIL---GLD-KAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 55 ~t~~eLa~~l---~i~-~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
.|.+.|-+.| |+- ++|-+.+|..|.++|||++.. ..+..|+.|+.+++-+..
T Consensus 476 yTeatLi~~ME~~GIGTpATra~iIe~L~~R~Yi~~~~-------k~l~pT~~G~~li~~l~~ 531 (591)
T d1mw9x_ 476 FSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVEN-------RRFYAEKMGEIVTDRLEE 531 (591)
T ss_dssp CCHHHHHHHHHHTTCCCTTTHHHHHHHHHHTTSEEEET-------TEEEECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECC-------CEEEECHHHHHHHHHHHH
T ss_conf 89999999998379997365899999998689899309-------888564779999999987
No 103
>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=89.50 E-value=0.25 Score=26.79 Aligned_cols=62 Identities=19% Similarity=0.322 Sum_probs=44.6
Q ss_pred HHHHHHHHH-CCCCCHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 999999970-8899988999986589011---45899999984132125674322300000178889999
Q T0617 43 WRIISVLSS-ASDCSVQKISDILGLDKAA---VSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 43 ~~iL~~l~~-~~~~t~~eLa~~l~i~~~~---vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
..+--.|.. .||+|..|||+.+++.++. +.|+++-|...|+++.... .++ .+.+||.++-++
T Consensus 32 Lgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~-~~~---~Y~lt~~s~~Lv 97 (101)
T d1fp2a1 32 MNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITK-EEE---SYALTVASELLV 97 (101)
T ss_dssp TTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEES-SSE---EEEECHHHHTTS
T ss_pred CCCHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEECC-CCC---EEECCHHHHHHH
T ss_conf 486889987689999999998749987651589999999975795144328-998---273489899750
No 104
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=89.09 E-value=0.25 Score=26.70 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 899989999999970889998899998658901145899
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
-||..|+.-...+-..| .++++||..+|++++|+.+-+
T Consensus 5 ~lt~~q~~~a~~l~~~G-~s~~~iA~~~gVSr~TiYry~ 42 (47)
T d1ijwc_ 5 AINKHEQEQISRLLEKG-HPRQQLAIIFGIGVSTLYRYF 42 (47)
T ss_dssp SSCHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHC
T ss_conf 59999999999999889-979999999796999998557
No 105
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=89.00 E-value=0.66 Score=23.95 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999899999999708899988999986589011458999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
|++.|-.++. +....+++.+|||+.+|+|+++|...+.+-.
T Consensus 19 Lpe~QR~vl~-L~~~e~ls~~EIA~~lgiS~~aV~~~l~Ra~ 59 (106)
T d1xsva_ 19 LTNKQRNYLE-LFYLEDYSLSEIADTFNVSRQAVYDNIRRTG 59 (106)
T ss_dssp SCHHHHHHHH-HHHTSCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999999-9999087599999998959999999999999
No 106
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=88.87 E-value=0.045 Score=31.73 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=32.3
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98899998658901145899999984132125674
Q T0617 56 SVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 56 t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
+..+||+.+++++++|.+.++.|++.|||+..+..
T Consensus 35 s~r~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 69 (100)
T d1v4ra1 35 SVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGAL 69 (100)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 69999999887989999999999988968996487
No 107
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} SCOP: d1r71b_ d1r71d_ d1r71c_
Probab=88.24 E-value=0.85 Score=23.21 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=35.2
Q ss_pred HCCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7289998999-9999970889998899998658901145899999984132
Q T0617 35 KFGIGMTEWR-IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYI 84 (148)
Q Consensus 35 ~~glt~~q~~-iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli 84 (148)
+-+|++.+-. .+..+... |.|+.+||..+|.+++.|++.++-+.--..|
T Consensus 11 R~dL~p~E~A~a~~rl~~~-g~t~~eiA~~lGks~s~Vs~~l~Ll~lp~~i 60 (114)
T d1r71a_ 11 RNELTPREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLLDLPEKI 60 (114)
T ss_dssp TTCCCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHGGGSCCHHH
T ss_pred HCCCCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 2489988999999999884-1688899999841389999999884688888
No 108
>d2pg4a1 a.4.5.48 (A:1-92) Uncharacterized protein APE0880.1 {Aeropyrum pernix [TaxId: 56636]}
Probab=88.06 E-value=0.93 Score=22.93 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=47.9
Q ss_pred HCC-CCCHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 088-9998899998658901145-899999984132125674322300000178889999999999
Q T0617 51 SAS-DCSVQKISDILGLDKAAVS-RTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 51 ~~~-~~t~~eLa~~l~i~~~~vs-~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
..| +.+..+|.++.|++.-+.- .+-++|...|+|.-..-+ -|.+.+.||++|+.+.+-....
T Consensus 25 kkgyepslaeivkasgvsektffmglkdrliraglvkeetls--yrvktlkltekgrrlaeclekc 88 (92)
T d2pg4a1 25 KKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLS--YRVKTLKLTEKGRRLAECLEKC 88 (92)
T ss_dssp HTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEE--TTEEEEEECHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 626883199999872853667754438899995102576766--6554200405325899999987
No 109
>d1tbxa_ a.4.5.48 (A:) Hypothetical protein F93 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=88.04 E-value=0.94 Score=22.92 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHH
Q ss_conf 989999999970889998899998658----9011458999999841321256743223000001788899999999999
Q T0617 40 MTEWRIISVLSSASDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFA 115 (148)
Q Consensus 40 ~~q~~iL~~l~~~~~~t~~eLa~~l~i----~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~~ 115 (148)
.++..+|..|.+++|+..-+|-...+- +..+.--.-+-|...|+|+-++. +..+.+.||++|+-+.-.+.+..
T Consensus 6 ypeaivl~y~ydnegiatydlykkvna~fpmstatfydakkfliqegfi~e~qe---~gek~~yltekgklfaislk~~i 82 (94)
T d1tbxa_ 6 YPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQE---RGEKRLYLTEKGKLFAISLKTAI 82 (94)
T ss_dssp CHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCEEHHHHHHHHCCCCCCCHHEEHHHHHHHHHHHHHHHHHH---CCCEEEEEECCCEEEEEEECHHH
T ss_conf 732068899963887111437877446686531010446888888774788876---67436888127708999833278
No 110
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=88.00 E-value=0.94 Score=22.90 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 89998999999997088999889999865890114589999998
Q T0617 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 37 glt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
.|++.+-.++..- ...++|..|||+.+|++.++|...+.+-.+
T Consensus 21 ~L~~~~r~v~~l~-~~~~~s~~eIA~~lgis~~tv~~~~~ra~~ 63 (71)
T d1rp3a2 21 KLPEREKLVIQLI-FYEELPAKEVAKILETSVSRVSQLKAKALE 63 (71)
T ss_dssp TSCHHHHHHHHHH-HTSCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHHHCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 7999999999999-868489999999979899999999999999
No 111
>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=88.00 E-value=0.41 Score=25.28 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=48.1
Q ss_pred HHHHHHHHHHCC---CCCHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHCCCC-CCCCC-EECCCCCHHHHHHH
Q ss_conf 999999997088---9998899998658901----14589999998413212567-43223-00000178889999
Q T0617 42 EWRIISVLSSAS---DCSVQKISDILGLDKA----AVSRTVKKLEEKKYIEVNGH-SEDKR-TYAINLTEMGQELY 108 (148)
Q Consensus 42 q~~iL~~l~~~~---~~t~~eLa~~l~i~~~----~vs~~i~~L~~~gli~r~~~-~~D~R-~~~l~LT~~G~~~~ 108 (148)
+..|.-.|+.+| +++..||+..+..+.+ .+-|++.-|...|.++.... +.|+. ...+.|||.|+-++
T Consensus 29 eLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~~~dg~~~~~Y~LTpvsk~Lv 104 (107)
T d1kyza1 29 ELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLV 104 (107)
T ss_dssp HTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHS
T ss_pred HCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCHHHHHHC
T ss_conf 8187999987389988899999975688897414899999999885575577631379997466783336677640
No 112
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=87.72 E-value=0.27 Score=26.51 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHC-----CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8999899999999708-----899988999986589011458999999841321256743
Q T0617 37 GIGMTEWRIISVLSSA-----SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 37 glt~~q~~iL~~l~~~-----~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
.|+.++......|.+. |-+..+.+|++.|+++|.+...+.+++..|.|+.+.-.-
T Consensus 12 tLSySEleAv~hIf~eL~g~EGllvASkiADrvgiTRSVIVNALRK~ESAGvIEsrSlGM 71 (91)
T d2b0la1 12 SLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGM 71 (91)
T ss_dssp TSCHHHHHHHHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHCCEEEECCCCC
T ss_conf 637879999999999738976547415554651853999999998764346044114777
No 113
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=87.02 E-value=1 Score=22.73 Aligned_cols=45 Identities=9% Similarity=0.243 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHH---HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 89998999999997---0889998899998658901145899999984
Q T0617 37 GIGMTEWRIISVLS---SASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 37 glt~~q~~iL~~l~---~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
.|+..+-.|+..-+ ..++.|..+||+.+|+|+..|.++.++-.++
T Consensus 8 ~L~~rer~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~~~al~k 55 (61)
T d1ku3a_ 8 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRK 55 (61)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 099999999999847789997789998899798899999999999998
No 114
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli [TaxId: 562]} SCOP: d1d6ma_
Probab=86.86 E-value=0.32 Score=26.05 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=33.7
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
Q ss_conf 58-901145899999984132125674322300000178889999999999
Q T0617 65 GL-DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
Q Consensus 65 ~i-~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 114 (148)
|| +++|-+.+|..|.++|||++. ...+..|+.|..+++.+...
T Consensus 521 GIGtpAT~a~iI~~L~~R~Yv~~~-------~k~l~pT~~G~~l~~~l~~~ 564 (620)
T d1i7da_ 521 GLGTEATRAGIIELLFKRGFLTKK-------GRYIHSTDAGKALFHSLPEM 564 (620)
T ss_dssp SSSCTTTHHHHHHHHHHTTSEEES-------SSEEEECHHHHHHHHHSCHH
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEE-------CCEEEECHHHHHHHHHHHHH
T ss_conf 899876507899997408727880-------88675248999999987875
No 115
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas aeruginosa [TaxId: 287]}
Probab=85.53 E-value=0.68 Score=23.83 Aligned_cols=54 Identities=9% Similarity=0.182 Sum_probs=43.3
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 9999970889998899998658901145899999984132125674322300000
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAIN 99 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~ 99 (148)
+..++...+-.+.+-|-+++++--..+.++++.|++.|+|.- .+....|.+.+.
T Consensus 9 a~~~V~~~~kaS~S~lQR~l~IGYnRAariid~LE~~GiVsp-~~g~~~ReVL~~ 62 (67)
T d2ve8a1 9 AVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTP-MNTNGSREVIAP 62 (67)
T ss_dssp HHHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCC-CCTTSCCCBCSC
T ss_pred HHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC-CCCCCCCEEECC
T ss_conf 999999808634899999971150799999999998759888-779988867489
No 116
>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=85.32 E-value=0.27 Score=26.50 Aligned_cols=67 Identities=13% Similarity=0.231 Sum_probs=47.3
Q ss_pred HHHHHHHHHHCCC----CCHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHCCCC--CCCCCEECCCCCHHHHHHH
Q ss_conf 9999999970889----99889999865890------114589999998413212567--4322300000178889999
Q T0617 42 EWRIISVLSSASD----CSVQKISDILGLDK------AAVSRTVKKLEEKKYIEVNGH--SEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 42 q~~iL~~l~~~~~----~t~~eLa~~l~i~~------~~vs~~i~~L~~~gli~r~~~--~~D~R~~~l~LT~~G~~~~ 108 (148)
+..|.-+|+.+|+ +|..||+..+..+. +.+-|++.-|...|.+..... ++++-...+.|||.++-++
T Consensus 28 eLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~~~~~~~~g~~e~~Y~Ltpvsk~Lv 106 (110)
T d1fp1d1 28 DLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLV 106 (110)
T ss_dssp HTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGS
T ss_pred HCCCHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHHC
T ss_conf 9387999997078988789999998678877794077999999999988176102455689997566783335667433
No 117
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=85.28 E-value=0.7 Score=23.77 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899988999986589011458999999841321
Q T0617 53 SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
Q Consensus 53 ~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~ 85 (148)
++++..++|+.++++++++++++++-.+.|-|.
T Consensus 29 ~G~s~r~aA~rf~VS~s~v~k~l~r~reTG~i~ 61 (63)
T d1k78a1 29 QGVRPCDISRQLRVSHGCVSKILGRYYETGSIK 61 (63)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 599899999995977999999999999726889
No 118
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=84.89 E-value=1.4 Score=21.85 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=46.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH---HHH---HCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 97321156776499999999999999999999987289998999999---997---088999889999865890114589
Q T0617 1 SNAMQKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIIS---VLS---SASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 1 ~~am~~l~le~~l~~~l~~l~~~~~~~~~~~~~~~~glt~~q~~iL~---~l~---~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
+.||.+..-+++-.+ +..+...-.......+.... +|+.+...|. .|. ..|..++.+|++.+|++..||+|.
T Consensus 1 ~~~m~~~~~~~w~~f-~~ll~~~~~~~~~~~fl~dL-lT~~E~~~la~R~~ia~~L~~G~~s~reI~~~~gvs~aTItR~ 78 (101)
T d1jhga_ 1 SAAMAEQRHQEWLRF-VDLLKNAYQNDLHLPLLNLM-LTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG 78 (101)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 910255513689999-99999706888999999993-9999999999999999999908967999999969875778899
Q ss_pred HHHHHH
Q ss_conf 999998
Q T0617 75 VKKLEE 80 (148)
Q Consensus 75 i~~L~~ 80 (148)
-+-|..
T Consensus 79 s~~Lk~ 84 (101)
T d1jhga_ 79 SNSLKA 84 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999872
No 119
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]} SCOP: d1co0a_ d1troa_ d3wrpa_ d1rcsa_ d2oz9r1 d1p6zr_ d1trra_ d1mi7r_ d1trog_ d1troc_ d1p6zn_ d1troe_
Probab=84.84 E-value=1.4 Score=21.83 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=46.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHH---HH---HCCCCCHHHHHHHHCCCCCHHHH
Q ss_conf 9732115677649999999999999-99999999872899989999999---97---08899988999986589011458
Q T0617 1 SNAMQKINIDRHATAQINMLANKLM-LKSSTAYTQKFGIGMTEWRIISV---LS---SASDCSVQKISDILGLDKAAVSR 73 (148)
Q Consensus 1 ~~am~~l~le~~l~~~l~~l~~~~~-~~~~~~~~~~~glt~~q~~iL~~---l~---~~~~~t~~eLa~~l~i~~~~vs~ 73 (148)
+.||++-.-+++-. +.-+...+. ..-...+.... +|+.+...|.. |. ..|+.|+.+|+..+|++-.||+|
T Consensus 1 ~~~m~e~~~e~w~~--l~~ll~~~~~~~~~~~fl~dL-lT~~E~~~la~R~~ia~~Ll~g~~syreIa~~~gvs~aTItR 77 (101)
T d1jhga_ 1 SAAMAEQRHQEWLR--FVDLLKNAYQNDLHLPLLNLM-LTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITR 77 (101)
T ss_dssp CHHHHHHHHHHHHH--HHHHHHHHHHTTCHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCCCCHHH--HHHHHHHHCCHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHH
T ss_conf 96557788614699--999998516988999998883-799899999999999999984899888899985785235678
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q T0617 74 TVKKLEE 80 (148)
Q Consensus 74 ~i~~L~~ 80 (148)
.-+-|..
T Consensus 78 gs~~Lk~ 84 (101)
T d1jhga_ 78 GSNSLKA 84 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
T ss_conf 8998752
No 120
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=84.55 E-value=0.37 Score=25.59 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=20.7
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99889999865890114589999
Q T0617 55 CSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
+|.+|||+..|++++|||+.++.
T Consensus 1 vTl~diA~~agvS~sTVSrvLn~ 23 (59)
T d1uxda_ 1 MKLDEIARLAGVSRTTASYVING 23 (59)
T ss_dssp CCHHHHHHHHTSCTTHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 97999999979699999999849
No 121
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=84.54 E-value=0.39 Score=25.44 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=24.8
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999708899988999986589011458999
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
|..+...-++|+.+||+.+|+++++++++++
T Consensus 6 lke~r~~~glsq~~LA~~lGvs~~~is~ie~ 36 (87)
T d2icta1 6 IQESLDELNVSLREFARAMEIAPSTASRLLT 36 (87)
T ss_dssp HHHHHHHHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHCHHHHHHHHH
T ss_conf 9999998699999999997246999999998
No 122
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=83.95 E-value=0.61 Score=24.14 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8999889999865890114589999998413212567
Q T0617 53 SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 53 ~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
.|.+++|+++.++++...+..+++.|...|.+.+..+
T Consensus 22 ~PP~vrdl~~~l~~~e~~~~~lL~~l~~~G~lvkI~~ 58 (64)
T d1lvaa3 22 QPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKIND 58 (64)
T ss_dssp SCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 9995999998919999999999999997897798536
No 123
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=83.79 E-value=0.96 Score=22.85 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999899999999708899988999986589011458999999
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
|+..+-.+ ..+....+.+..|||+.+|++.++|...+.+-.
T Consensus 19 Lp~~~r~v-~~l~~~~~~s~~eIA~~lgis~~tv~~~l~ra~ 59 (68)
T d1or7a1 19 LPEDLRMA-ITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAR 59 (68)
T ss_dssp SCHHHHHH-HHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999-999999098999999998949999999999999
No 124
>d1ixsb1 a.4.5.11 (B:243-318) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=83.64 E-value=0.82 Score=23.30 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 2899989999999970---88999889999865890114589999-9984132125674322300000178889999
Q T0617 36 FGIGMTEWRIISVLSS---ASDCSVQKISDILGLDKAAVSRTVKK-LEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~---~~~~t~~eLa~~l~i~~~~vs~~i~~-L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
.||...+..+|..|.+ .||.-...||..++-++.|+--++.. |.+.|||.|.+. +| .+|++|.+.+
T Consensus 1 lGLd~~Dr~~L~~l~~~f~ggPVGl~tlA~~lgE~~~TiEdviEPyLiq~G~i~RTpr---GR----~~T~~a~~hL 70 (76)
T d1ixsb1 1 LGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPR---GR----VATELAYRHL 70 (76)
T ss_dssp TCCCHHHHHHHHTTTSSSCSSCCCSHHHHGGGSSCTTHHHHTSHHHHHHTTSEEECSS---SE----EECHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC---HH----HHHHHHHHHC
T ss_conf 9988899999999999828997509999999838752888871489999707865897---28----8689999981
No 125
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=83.59 E-value=0.72 Score=23.68 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 999999708899988999986589011458999
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
..+..+...-++|+.++|+.+|++++.+|++..
T Consensus 9 ~~i~~~r~~~gltq~elA~~~gv~~~~is~ie~ 41 (69)
T d2a6ca1 9 IVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMR 41 (69)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHC
T ss_conf 999999999699999999998747847999976
No 126
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=82.78 E-value=0.57 Score=24.36 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=27.0
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 999999708899988999986589011458999
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
.-|..+...-|+|+.++|+.+|++++++|++.+
T Consensus 14 ~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~ 46 (89)
T d2o38a1 14 YALNAVIDRARLSQAAAAARLGINQPKVSALRN 46 (89)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999599999999999733708999984
No 127
>d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=82.66 E-value=0.69 Score=23.82 Aligned_cols=50 Identities=10% Similarity=0.195 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99989999999970889998899998658901145899999984132125
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
|+.-|-.||......|-.|++.|...++-++..+...++.|.+.|++=-.
T Consensus 1 Ls~Dqt~vLe~a~~~G~Vt~s~l~~~lgW~~~Ra~~aLd~lv~eGl~WvD 50 (68)
T d1u5ta2 1 LTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWID 50 (68)
T ss_dssp CCTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEE
T ss_pred CCCHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 98168999999997495539999988499899999999999966957876
No 128
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.52 E-value=1 Score=22.73 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=37.6
Q ss_pred HHHHHH---HHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999---7088999889999865890114589999998413212567
Q T0617 44 RIISVL---SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 44 ~iL~~l---~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
.+|.++ ......+..+||..+++.+--|.+.+=.|+++|.+.+...
T Consensus 3 ~vl~~l~~lg~~~~~tA~~LA~kl~vpKk~iNr~LYsL~~kgkl~k~~g 51 (59)
T d2gxba1 3 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG 51 (59)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECS
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCC
T ss_conf 7999999628852034999999968869999999999997552653689
No 129
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]}
Probab=81.53 E-value=0.9 Score=23.02 Aligned_cols=54 Identities=7% Similarity=0.220 Sum_probs=42.9
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECC
Q ss_conf 9999997088999889999865890114589999998413212567432230000
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAI 98 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l 98 (148)
.+..++...+..+.+-|-+++.+--..++++++.|+..|+|.-. +....|.+.+
T Consensus 11 ~a~~~V~~~~kaS~S~lQR~l~IGYnRAariid~LE~~GiVsp~-~~~~~ReVL~ 64 (69)
T d2j5pa1 11 QAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQ-GHNGNREVLA 64 (69)
T ss_dssp HHHHHHHHTTEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSBCCC-CSSSEEEBCS
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC-CCCCCCEECC
T ss_conf 99999998086448999999712522999999999988768877-7997996728
No 130
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=81.47 E-value=0.55 Score=24.48 Aligned_cols=29 Identities=7% Similarity=0.248 Sum_probs=23.8
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 99970889998899998658901145899
Q T0617 47 SVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 47 ~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
..+....++|+.++|+.+|++++++++..
T Consensus 7 ~~lR~~~g~tq~elA~~~gis~~~is~~e 35 (66)
T d1utxa_ 7 KLIREKKKISQSELAALLEVSRQTINGIE 35 (66)
T ss_dssp HHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHCCCCHHHHHHHH
T ss_conf 99999859999999886355798999998
No 131
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=81.07 E-value=1.9 Score=20.89 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=33.0
Q ss_pred CCCCHHHH-HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 28999899-999999708899988999986589011458999999
Q T0617 36 FGIGMTEW-RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 36 ~glt~~q~-~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
-+||+.+- ..+..+... |.++.+||+.+|.+++.|++.++-+.
T Consensus 12 ~~L~p~e~A~a~~~l~~~-g~s~~eiA~~~G~s~~~V~~~l~L~~ 55 (114)
T d1r71a_ 12 NELTPREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLLD 55 (114)
T ss_dssp TCCCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHGGGS
T ss_pred CCCCHHHHHHHHHHHHHH-CCCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 689999999999999880-99899999997772999999999967
No 132
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=80.93 E-value=1.9 Score=20.84 Aligned_cols=44 Identities=5% Similarity=0.111 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHH---HHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 8999899999999---7088999889999865890114589999998
Q T0617 37 GIGMTEWRIISVL---SSASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 37 glt~~q~~iL~~l---~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
.|++.+-.|+..- ...+|.|..+||..+|+|+..|..+-++-.+
T Consensus 18 ~L~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrERVRQie~~al~ 64 (87)
T d1ttya_ 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 39999999999972778999688999999959889999999999999
No 133
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=80.39 E-value=0.41 Score=25.33 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999889999865890114589999
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
++|+.|||+..|++++|||+.++.
T Consensus 2 ~~Ti~diA~~agvS~sTVSr~l~~ 25 (59)
T d1efaa1 2 PVTLYDVAEYAGVSYQTVSRVVNQ 25 (59)
T ss_dssp CCCHHHHHHTTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 888999998979799999999779
No 134
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=80.26 E-value=0.68 Score=23.85 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=23.3
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9997088999889999865890114589
Q T0617 47 SVLSSASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 47 ~~l~~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..+...-|+|+.++|+.+|++++++++.
T Consensus 5 k~~R~~~gltQ~elA~~lGvs~~tvs~~ 32 (62)
T d2ppxa1 5 KIIRRALKLTQEEFSARYHIPLGTLRDW 32 (62)
T ss_dssp HHHHHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999996999999999969899999988
No 135
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=79.98 E-value=0.58 Score=24.28 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=19.9
Q ss_pred CHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9889999865890114589999
Q T0617 56 SVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 56 t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
|.+|+|+..|++.+|||+.++.
T Consensus 2 Ti~dvA~~agVS~sTVSr~ln~ 23 (57)
T d1qpza1 2 TIKDVAKRANVSTTTVSHVINK 23 (57)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHCC
T ss_conf 8999999989599999999779
No 136
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=79.73 E-value=0.47 Score=24.89 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.8
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99889999865890114589999
Q T0617 55 CSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
.|.+|+|+..|++.+|||+.++.
T Consensus 2 vTi~dvA~~agvS~~TVSr~Ln~ 24 (57)
T d2hsga1 2 VTIYDVAREASVSMATVSRVVNG 24 (57)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 69999998989599999999689
No 137
>d2co5a1 a.4.5.48 (A:5-93) STIV F93 {Sulfolobus turreted icosahedral virus [TaxId: 269145]}
Probab=79.70 E-value=1.7 Score=21.14 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHCCC-----CCHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 89999999970889-----998899998658--90114589999998413212567432230000017888999999999
Q T0617 41 TEWRIISVLSSASD-----CSVQKISDILGL--DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 41 ~q~~iL~~l~~~~~-----~t~~eLa~~l~i--~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
.-|.+|.++.-+|. ---+++-+++.+ +.+..-.+++.|..+..++-...|+ .+.++||++|.+-++++.+
T Consensus 6 nyyiilkvlvingsrlekkrlrseilkrfdidisdgvlyplidsliddkilreeeapd---gkvlfltekgmkefeelhe 82 (89)
T d2co5a1 6 NYYIILKVLVINGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPD---GKVLFLTEKGMKEFEELHE 82 (89)
T ss_dssp HHHHHHHHHHHTTTEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECCTT---SCEEEECHHHHHHHHHHHH
T ss_pred EEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCCCC---CEEEEEEHHHHHHHHHHHH
T ss_conf 8898999999716167688889999987287743676035578775077762310898---6099985110578999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q T0617 114 FAIERE 119 (148)
Q Consensus 114 ~~~~~~ 119 (148)
..+.+.
T Consensus 83 ffkkiv 88 (89)
T d2co5a1 83 FFKKIV 88 (89)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 998654
No 138
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=79.47 E-value=0.7 Score=23.77 Aligned_cols=31 Identities=6% Similarity=0.090 Sum_probs=24.9
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999708899988999986589011458999
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
|..+...-++++.++|+.+|++++++++..+
T Consensus 8 lr~~R~~~gltq~~lA~~~gvs~~ti~~~E~ 38 (65)
T d2croa_ 8 LKKRRIALKMTQTELATKAGVKQQSIQLIEA 38 (65)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999998499999999997867949998787
No 139
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli [TaxId: 562]}
Probab=79.10 E-value=1.1 Score=22.45 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=32.5
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHH
Q ss_conf 58-90114589999998413212567432230000017888999999999
Q T0617 65 GL-DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
Q Consensus 65 ~i-~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 113 (148)
|| +++|-+.+|..|.++|||++. ...+..|+.|..+++.+..
T Consensus 521 GIGtpaT~a~iI~~L~~R~Yv~~~-------~k~l~pT~~G~~l~~~l~~ 563 (620)
T d1i7da_ 521 GLGTEATRAGIIELLFKRGFLTKK-------GRYIHSTDAGKALFHSLPE 563 (620)
T ss_dssp SSSCTTTHHHHHHHHHHTTSEEES-------SSEEEECHHHHHHHHHSCH
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEC-------CCEEEECHHHHHHHHHHHH
T ss_conf 888626699999999757869940-------9888033789999999998
No 140
>d2axla1 a.4.5.43 (A:1-144) Werner syndrome ATP-dependent helicase WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.97 E-value=0.96 Score=22.85 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHH
Q ss_conf 58901145899999984132125674322300000178889999999
Q T0617 65 GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVA 111 (148)
Q Consensus 65 ~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~ 111 (148)
+.+..-..+++..|...||+..... ...-...+.||++|++++...
T Consensus 61 ~~s~~~w~~li~qli~~G~L~e~~~-~~~~~~~l~lt~kg~~~L~g~ 106 (144)
T d2axla1 61 DQTESWWKAFSRQLITEGFLVEVSR-YNKFMKICALTKKGRNWLHKA 106 (144)
T ss_dssp GSCHHHHHHHHHHHHHHSSEEEETT-SCTTTCEEEECHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCEEECC-CCCCEEEEEECHHHHHHHHCC
T ss_conf 6899999999999998586014002-485010355778899998056
No 141
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=78.65 E-value=0.76 Score=23.53 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=24.9
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999708899988999986589011458999
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
|..+...-++|+.++|+.+|+++++++++.+
T Consensus 6 ik~~R~~~gltq~~la~~~gis~~~i~~~E~ 36 (68)
T d1b0na2 6 IKQYRKEKGYSLSELAEKAGVAKSYLSSIER 36 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999998299999999897979999999985
No 142
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=76.86 E-value=1.5 Score=21.62 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=20.1
Q ss_pred HHCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 7088999889999865890114589
Q T0617 50 SSASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 50 ~~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
...-|+|+.++|+.+|+++++++++
T Consensus 21 R~~~gltq~~lA~~lgis~~~is~~ 45 (87)
T d1lmb3_ 21 KNELGLSQESVADKMGMGQSGVGAL 45 (87)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9993999999998867228889999
No 143
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=76.54 E-value=2.2 Score=20.46 Aligned_cols=56 Identities=13% Similarity=0.271 Sum_probs=43.3
Q ss_pred HHHHHHHHHH-HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--CCCCCCCCCEE
Q ss_conf 8999999997-08899988999986589011458999999841321--25674322300
Q T0617 41 TEWRIISVLS-SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE--VNGHSEDKRTY 96 (148)
Q Consensus 41 ~q~~iL~~l~-~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~--r~~~~~D~R~~ 96 (148)
.-..++..+- ..+..|--+||+.+++....|-+++-.|-..|++. |.+|+..+.-.
T Consensus 19 ~~~~v~~~L~~~~~evtDe~iA~~tgi~in~VRk~Ly~L~~~~L~~y~R~kd~~~gw~~ 77 (88)
T d1q1ha_ 19 DVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFI 77 (88)
T ss_dssp TTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCE
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEE
T ss_conf 89999999886367678999999969969999999999986896688873448888389
No 144
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=75.80 E-value=1.1 Score=22.45 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=24.4
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999970889998899998658901145899
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
-|..+...-++|+.++|+.+|+++++++++-
T Consensus 13 ~ik~~R~~~gltq~~lA~~~gis~~~i~~~E 43 (69)
T d1y7ya1 13 RLRELRTAKGLSQETLAFLSGLDRSYVGGVE 43 (69)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999839999999868299898999998
No 145
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=75.77 E-value=0.89 Score=23.07 Aligned_cols=29 Identities=10% Similarity=0.262 Sum_probs=24.1
Q ss_pred HHHHCCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 997088999889999865890114589999
Q T0617 48 VLSSASDCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 48 ~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
.|. ..|+.+++||+.|++++++|-|+++.
T Consensus 13 ~L~-~~G~gat~IAk~lgI~R~SVYR~L~~ 41 (43)
T d1gdta1 13 NMW-QQGLGASHISKTMNIARSTVYKVINE 41 (43)
T ss_dssp HHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHH-HCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999-94898999999979879999999860
No 146
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=75.73 E-value=1.5 Score=21.47 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=27.3
Q ss_pred HHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 708899988999986589011458999999841
Q T0617 50 SSASDCSVQKISDILGLDKAAVSRTVKKLEEKK 82 (148)
Q Consensus 50 ~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~g 82 (148)
...+|.+++++|..+||+++++.+.++.....|
T Consensus 19 ~~~~g~s~~~vA~~lGIs~~tl~~W~k~~~~~~ 51 (89)
T d2jn6a1 19 ENSDGASLQQIANDLGINRVTLKNWIIKYGSNH 51 (89)
T ss_dssp TTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 982998599999997989889999999984424
No 147
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=75.16 E-value=1.1 Score=22.45 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=22.9
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999708899988999986589011458999
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
|..+...-++|+.+||+.+|+++++++++.+
T Consensus 13 lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~ 43 (79)
T d1y9qa1 13 LKNLRKSRGLSLDATAQLTGVSKAMLGQIER 43 (79)
T ss_dssp HHHHHHHTTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999998299999999987711648999986
No 148
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=75.11 E-value=1.8 Score=21.06 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=31.7
Q ss_pred HHHHHHHHC--CCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 999999708--899988999986589011458999999841
Q T0617 44 RIISVLSSA--SDCSVQKISDILGLDKAAVSRTVKKLEEKK 82 (148)
Q Consensus 44 ~iL~~l~~~--~~~t~~eLa~~l~i~~~~vs~~i~~L~~~g 82 (148)
.++.+|..+ .++++.+||+.++++++..++..++.-...
T Consensus 7 ~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~t 47 (54)
T d1bl0a1 7 SILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHS 47 (54)
T ss_dssp HHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 99999986547999999999998939999999999999919
No 149
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=74.73 E-value=2.9 Score=19.67 Aligned_cols=44 Identities=9% Similarity=0.243 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHH---HCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 89998999999997---088999889999865890114589999998
Q T0617 37 GIGMTEWRIISVLS---SASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
Q Consensus 37 glt~~q~~iL~~l~---~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~ 80 (148)
.|++.+-.|+..-. ..++.|..+||..+|+|+..|.++-.+-.+
T Consensus 5 ~L~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrerVrqie~~al~ 51 (68)
T d2p7vb1 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 39999999999980889998688999999979789999999999999
No 150
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.57 E-value=0.56 Score=24.40 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 999899999999708899988999986589011458999999841
Q T0617 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKK 82 (148)
Q Consensus 38 lt~~q~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~g 82 (148)
++..|..+|....+.++.|..+|+..++++...+.+.+..|...+
T Consensus 189 ~s~~Qa~ILl~fn~~~~~t~~~i~~~~~i~~~~l~~~L~~L~~~k 233 (273)
T d2hyec3 189 VSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGK 233 (273)
T ss_dssp EEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred ECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 729999999975478877699999997919999999999987302
No 151
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=74.57 E-value=1.1 Score=22.34 Aligned_cols=31 Identities=16% Similarity=0.407 Sum_probs=23.5
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999708899988999986589011458999
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
|..+....++|+.++|+.+|+++++++++.+
T Consensus 15 ik~~R~~~gltq~~lA~~~gis~~~i~~~e~ 45 (77)
T d2b5aa1 15 LKKIRTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999998099999999897979999999986
No 152
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=74.28 E-value=1.2 Score=22.23 Aligned_cols=30 Identities=3% Similarity=0.098 Sum_probs=24.0
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 999970889998899998658901145899
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
|..+...-++|+.++|+.++++++++++..
T Consensus 6 ik~~R~~~g~sq~elA~~~gvs~~~is~~E 35 (63)
T d1r69a_ 6 VKSKRIQLGLNQAELAQKVGTTQQSIEQLE 35 (63)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999849969999998373999999987
No 153
>d1lvaa4 a.4.5.35 (A:575-634) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=74.21 E-value=2.7 Score=19.88 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=42.0
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 99999970889998899998658901145899999984132125674322300
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTY 96 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~ 96 (148)
.++..+..++++++++.-+.+++++-.+-.++..+-+.|+..|. +|.|..
T Consensus 8 ~~i~~l~~~g~~~v~~frd~~g~sRK~ai~lLE~~D~~~~T~R~---gd~Rvl 57 (60)
T d1lvaa4 8 EVIKNLASTGPFGLAEARDALGSSRKYVLPLLEYLDQVKFTRRV---GDKRVV 57 (60)
T ss_dssp HHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE---CCEEEE
T ss_conf 99998776698839999999785198999999998644985762---999772
No 154
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.72 E-value=2.2 Score=20.38 Aligned_cols=32 Identities=3% Similarity=0.086 Sum_probs=25.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 99999970889998899998658901145899
Q T0617 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 44 ~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
..|..+...-++|+.+||+.++++.++++++-
T Consensus 9 ~~I~~~R~~~gltq~~lA~~~gis~~~is~~E 40 (78)
T d1x57a1 9 KVIQQGRQSKGLTQKDLATKINEKPQVIADYE 40 (78)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHH
T ss_conf 99999999859972678871887899999998
No 155
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=73.37 E-value=1.3 Score=21.99 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=23.4
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHH
Q ss_conf 99997088999889999865890114589
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~ 74 (148)
+..+...-++|+.++|+.+|+++.++++.
T Consensus 6 ~k~~R~~~gltQ~elA~~LGvs~~ti~~y 34 (67)
T d2auwa1 6 FGDWMHRNNLSLTTAAEALGISRRMVSYY 34 (67)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999995999999999959989999999
No 156
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}
Probab=72.35 E-value=0.75 Score=23.56 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=51.4
Q ss_pred CCCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 28999899---999999708899988999986589011----45899999984132125674322300000178889999
Q T0617 36 FGIGMTEW---RIISVLSSASDCSVQKISDILGLDKAA----VSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
Q Consensus 36 ~glt~~q~---~iL~~l~~~~~~t~~eLa~~l~i~~~~----vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~ 108 (148)
+-+|..+. .++.-|.-..++...++.+..+++... .-..++.|++.|||+...+ .+.+|++|+-++
T Consensus 358 ~~Ls~~d~~~~~vi~~L~~~~~ld~~~~~~~fg~~~~~~f~~~~~~L~~l~~~GLv~~~~~-------~l~lT~~Gr~l~ 430 (441)
T d1olta_ 358 IALTRDDCIRRDVIKSLICNFRLDYSPIEQQWDLLFADYFAEDLKLLAPLAKDGLVDVDEK-------GIQVTAKGRLLI 430 (441)
T ss_dssp EECCHHHHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHTHHHHHHHHHHHHTTSEEECSS-------EEEECTTTGGGH
T ss_pred EECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECC-------EEEECHHHHHHH
T ss_conf 1488889999999998998689287999999798888987999999999997898999899-------999998389999
Q ss_pred HHHHHH
Q ss_conf 999999
Q T0617 109 EVASDF 114 (148)
Q Consensus 109 ~~~~~~ 114 (148)
..+...
T Consensus 431 ~~I~~~ 436 (441)
T d1olta_ 431 RNICMC 436 (441)
T ss_dssp HHHHHT
T ss_pred HHHHHH
T ss_conf 999998
No 157
>d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=72.33 E-value=1.2 Score=22.16 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHH
Q ss_conf 5890114589999998413212567432230000017888999999
Q T0617 65 GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
Q Consensus 65 ~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~ 110 (148)
+.++.-..++++.|...||+....+ +.-.+.+|++|++++..
T Consensus 57 ~~~~~~w~~li~qLv~~g~L~~~~~----~y~~l~lt~~g~~~l~g 98 (110)
T d1oywa1 57 DKSHEHWVSVIRQLIHLGLVTQNIA----QHSALQLTEAARPVLRG 98 (110)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEGG----GTTEEEECGGGHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCEECCC----CCCEEEECHHHHHHHCC
T ss_conf 8899999999999998498200567----68858999779999679
No 158
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=69.92 E-value=1.3 Score=21.92 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=24.0
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999708899988999986589011458999
Q T0617 46 ISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 46 L~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
|..+...-++|+.++|+.+++++++++++.+
T Consensus 8 ik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~ 38 (66)
T d2r1jl1 8 IRARRKKLKIRQAALGKMVGVSNVAISQWER 38 (66)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999998599999999997989999999986
No 159
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=69.17 E-value=3.3 Score=19.26 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 89998899998658901145899
Q T0617 53 SDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 53 ~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
.+.++.+||+..|++++++|++-
T Consensus 24 ~~~t~~eLA~~~Gvs~~~ls~iE 46 (82)
T d2ofya1 24 GDMSMVTVAFDAGISVETLRKIE 46 (82)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHH
T ss_pred HCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 80799999989717999999998
No 160
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=69.14 E-value=2 Score=20.79 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=30.4
Q ss_pred HHHHHHH--CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9999970--8899988999986589011458999999841
Q T0617 45 IISVLSS--ASDCSVQKISDILGLDKAAVSRTVKKLEEKK 82 (148)
Q Consensus 45 iL~~l~~--~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~g 82 (148)
++.+|.+ ..+++..+||+.++++++..+|..++.....
T Consensus 8 i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~Fk~~~g~t 47 (54)
T d1d5ya1 8 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHA 47 (54)
T ss_dssp HHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 9999987448999999999998929999999999999909
No 161
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=67.25 E-value=2 Score=20.75 Aligned_cols=32 Identities=9% Similarity=0.268 Sum_probs=24.8
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99999708899988999986589011458999
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
.+..+..+|+.|+.+||+..+++++++.+--+
T Consensus 10 a~~l~~~~G~~ti~~Ia~~agvs~~~iY~~F~ 41 (65)
T d2g7ga1 10 ALELVDRDGDFRMPDLARHLNVQVSSIYHHAK 41 (65)
T ss_dssp HHHHHHHHSSCCHHHHHHHTTSCHHHHHTTSC
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCHHHCCC
T ss_conf 99999786797899999885706131311589
No 162
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=66.46 E-value=4.3 Score=18.49 Aligned_cols=59 Identities=8% Similarity=0.071 Sum_probs=46.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH-----HHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 9999998728999899999999-----7088999889999865890114589999998413212
Q T0617 28 SSTAYTQKFGIGMTEWRIISVL-----SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEV 86 (148)
Q Consensus 28 ~~~~~~~~~glt~~q~~iL~~l-----~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r 86 (148)
....+.....|.+..|..+..+ ...++.+.++--....++..-++++.+-+++.|||.+
T Consensus 37 ~E~~LC~~lrL~P~~YL~~K~~l~~E~~k~g~l~k~da~~~~kiD~~K~~rIydfl~~~GWi~~ 100 (101)
T d2cuja1 37 KEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREGYITK 100 (101)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999919995999999999999999859986999988725567889999999998668506
No 163
>d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]}
Probab=66.09 E-value=3.9 Score=18.78 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99970889998899998658901145899999984132125674322
Q T0617 47 SVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 47 ~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
-.|.-+|....++|+..+....|-|-.++.+|+..|=++|..-..++
T Consensus 9 D~iAL~G~~da~qlS~qL~~P~Plv~AMLerL~aMGK~erie~d~~g 55 (78)
T d1xn7a_ 9 DLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDG 55 (78)
T ss_dssp HHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECCCCCC
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEECCCCCCC
T ss_conf 99997171339999888748847999999999972020131135564
No 164
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=65.70 E-value=3.2 Score=19.34 Aligned_cols=39 Identities=10% Similarity=0.324 Sum_probs=27.0
Q ss_pred CCCHHHHH--HHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 89998999--999997088--9998899998658901145899
Q T0617 37 GIGMTEWR--IISVLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 37 glt~~q~~--iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
|+|..++. ....+.+.| +.|+++||+..|++++++.+.-
T Consensus 2 g~t~e~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF 44 (72)
T d1zk8a1 2 GLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHV 44 (72)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 7239999999999999869775669999999597999998988
No 165
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=65.64 E-value=4.5 Score=18.39 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=29.5
Q ss_pred HHHHHHHCCCCCHHHHHHHH----C--CCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99999708899988999986----5--8901145899999984132125
Q T0617 45 IISVLSSASDCSVQKISDIL----G--LDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l----~--i~~~~vs~~i~~L~~~gli~r~ 87 (148)
||..++ .| .+=++|-+.+ | ++-++.+.+++.|++.|||++.
T Consensus 11 ILkaia-~G-~rWs~IK~yle~~~G~~I~d~~ls~lL~nL~k~~~iek~ 57 (73)
T d2fnaa1 11 IMRTLS-KC-GKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE 57 (73)
T ss_dssp HHHHHT-TC-BCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHH-CC-CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 999998-44-969999999999708878858999999999875764515
No 166
>d1xs9a_ i.11.1.1 (A:) Ternary complex formed between MarA, the alpha-CTD of RNA polymerase and DNA {Escherichia coli [TaxId: 562]}
Probab=65.53 E-value=4.5 Score=18.38 Aligned_cols=53 Identities=11% Similarity=0.246 Sum_probs=37.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHH------HCCCCCHHHHHHHHCC-CCCHHHHHHHHHH
Q ss_conf 999999987289998999999997------0889998899998658-9011458999999
Q T0617 27 KSSTAYTQKFGIGMTEWRIISVLS------SASDCSVQKISDILGL-DKAAVSRTVKKLE 79 (148)
Q Consensus 27 ~~~~~~~~~~glt~~q~~iL~~l~------~~~~~t~~eLa~~l~i-~~~~vs~~i~~L~ 79 (148)
.+.+.+.+.+|+|+.+|.-...+. ..++.++.+||..+|. +.+..++..++..
T Consensus 43 ~l~r~Fk~~~g~s~~~~~~~~Rl~~A~~lL~~~~~si~~Ia~~~Gf~~~s~F~r~Fk~~~ 102 (129)
T d1xs9a_ 43 HLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYF 102 (129)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTCSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999998566388999999999999988730215899999717788788999999973
No 167
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=61.55 E-value=4 Score=18.71 Aligned_cols=51 Identities=8% Similarity=0.111 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999999970889998899998658901145899999984132125674322
Q T0617 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~ 93 (148)
-.++.+..-.--++...||+.++++...+-..+.+|+..|-|.-+.|..++
T Consensus 19 hni~~is~~Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~i~akIDq~~g 69 (84)
T d1ufma_ 19 HNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDG 69 (84)
T ss_dssp HHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTT
T ss_pred HHHHHHHHHHCEEEHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_conf 989999883025669999999787999999999999856958999908999
No 168
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=58.68 E-value=5.9 Score=17.59 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999970889998899998658901145899999
Q T0617 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L 78 (148)
......+.+. +.|+.+||+.+|.++++|+..++-|
T Consensus 9 A~a~~~L~e~-g~t~~~iA~~~Gks~~~V~~~LrLl 43 (93)
T d1vz0a1 9 ARGYQALLEM-GLTQEEVARRVGKARSTVANALRLL 43 (93)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHHGG
T ss_pred HHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999984-9999999999851469999999899
No 169
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=56.56 E-value=6.4 Score=17.35 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99999997088999889999865890114589999
Q T0617 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
-.|...|..+++ ++++-|+.+||++.|+-+.+++
T Consensus 23 ~~I~~aL~~~~g-n~~~aA~~LGIsR~TL~rkmkk 56 (60)
T d1umqa_ 23 EHIQRIYEMCDR-NVSETARRLNMHRRTLQRILAK 56 (60)
T ss_dssp HHHHHHHHHTTS-CHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999668-5999999989889999999997
No 170
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=55.49 E-value=6.7 Score=17.24 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=23.7
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99997088--99988999986589011458999
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
+..+.++| +.|+.+||+..|++++++-+..+
T Consensus 14 ~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 46 (74)
T d1v7ba1 14 IDYIGEYSLETLSYDSLAEATGLSKSGLIYHFP 46 (74)
T ss_dssp HHHHHHSCSTTCCHHHHHHHHCSCHHHHHHHCS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC
T ss_conf 999998595635799999884969223855079
No 171
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=54.53 E-value=6.4 Score=17.36 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=23.4
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9997088--99988999986589011458999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
..+..+| +.|+.+||+..|++++++.+...
T Consensus 14 ~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 45 (73)
T d1t56a1 14 NLLEDRPLADISVDDLAKGAGISRPTFYFYFP 45 (73)
T ss_dssp HHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99997591507799999986988889988884
No 172
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=54.15 E-value=6.1 Score=17.52 Aligned_cols=31 Identities=13% Similarity=0.277 Sum_probs=23.6
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99997088--99988999986589011458999
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
+..+...| ++|+.+||+..|++++++.+..+
T Consensus 17 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~~F~ 49 (78)
T d2o7ta1 17 CNLYRTHHHDSLTMENIAEQAGVGVATLYRNFP 49 (78)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 999998491406799999883998879999886
No 173
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=54.03 E-value=5.8 Score=17.66 Aligned_cols=31 Identities=10% Similarity=0.276 Sum_probs=23.5
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9997088--999889999865890114589999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
..+...| +.|+.+||+..|++++++-+--+.
T Consensus 11 ~lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~ 43 (69)
T d2i10a1 11 ELFWRQGYEGTSITDLTKALGINPPSLYAAFGS 43 (69)
T ss_dssp HHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 999987906277999999868786299888859
No 174
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=53.86 E-value=7.1 Score=17.06 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=24.1
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99997088--999889999865890114589999
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
+..+..+| +.|+.+||+..+++++++.+.-..
T Consensus 15 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~~ 48 (75)
T d3c07a1 15 MRLFQERGYDRTTMRAIAQEAGVSVGNAYYYFAG 48 (75)
T ss_dssp HHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 9999974914077999999879398799989859
No 175
>d1w5sa1 a.4.5.11 (A:300-409) CDC6-like protein APE0152, C-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=53.63 E-value=7.1 Score=17.04 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCC--CCCCEECCCCC
Q ss_conf 901145899999984132125674--32230000017
Q T0617 67 DKAAVSRTVKKLEEKKYIEVNGHS--EDKRTYAINLT 101 (148)
Q Consensus 67 ~~~~vs~~i~~L~~~gli~r~~~~--~D~R~~~l~LT 101 (148)
+...++..++.|+..|+|..+... ..+|.+.+.+.
T Consensus 52 ~~t~~~~~l~~Le~lGiI~~r~~~~G~rGrt~~isl~ 88 (110)
T d1w5sa1 52 GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 88 (110)
T ss_dssp CHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEC
T ss_conf 3989999999998769768875058999970488627
No 176
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=53.56 E-value=6 Score=17.55 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=23.3
Q ss_pred HHHHHC--CCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999708--8999889999865890114589999
Q T0617 47 SVLSSA--SDCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 47 ~~l~~~--~~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
..+..+ .++|+.+||+..|++++++.+-...
T Consensus 15 ~~~~~~G~~~~ti~~Ia~~agvs~~s~y~~F~~ 47 (79)
T d2fbqa1 15 QLFAEKGFAETSLRLITSKAGVNLAAVNYHFGS 47 (79)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 999986935040999999988285578787769
No 177
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=53.55 E-value=7.2 Score=17.03 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=22.5
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9997088--99988999986589011458999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
..+.++| ++|+.+||+..|++++++.+--.
T Consensus 17 ~l~~~~G~~~~sv~~Ia~~agvs~~t~Y~~F~ 48 (71)
T d2iu5a1 17 DLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQ 48 (71)
T ss_dssp HHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCS
T ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCC
T ss_conf 99998496407799999875716458977767
No 178
>d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=53.22 E-value=1 Score=22.65 Aligned_cols=67 Identities=22% Similarity=0.208 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC----CCCCEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 889998899998658901145899999984132125674----322300000178889999999999999999
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS----EDKRTYAINLTEMGQELYEVASDFAIEREK 120 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~----~D~R~~~l~LT~~G~~~~~~~~~~~~~~~~ 120 (148)
..|++|+|||+.+|.|+++||-+-++-- .-|++.... ..-.......-++|-++++--..+..+..+
T Consensus 3 ~kGltQ~eIA~~LgTSraNIs~IEk~A~--eNIekAr~Tl~~~~~l~Ap~~i~i~~GtDl~~iP~~v~~~aD~ 73 (122)
T d1nr3a_ 3 ERGWSQKKIARELKTTRQNVSAIERKAM--ENIEKSRNTLDFVKSLKSPVRILCRRGDTLDEIIKRLLEESNK 73 (122)
T ss_dssp CCSCSSCSTHHHHHHCCSSSCCHHHHHH--TTCSSSSCHHHHHHHHCCCEEEEECCGGGHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 2567799999997765889999999999--9999999999999966898899977999288807999998887
No 179
>d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=52.48 E-value=7.4 Score=16.92 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 899999999708899988999986-----589011458999999841321256743
Q T0617 41 TEWRIISVLSSASDCSVQKISDIL-----GLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 41 ~q~~iL~~l~~~~~~t~~eLa~~l-----~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
.|..|...|..++-.++.||.+.+ .++.+|+||-++.| |.+. .+++.
T Consensus 3 R~~~I~~li~~~~i~tQ~eL~~~L~~~Gi~vTQaTlSRDL~eL---g~vK-v~~~~ 54 (75)
T d1b4aa1 3 RHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEM---QLVK-VPMAN 54 (75)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHT---TCEE-EECSS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHH---CCEE-EECCC
T ss_conf 7999999998689778999999999859863089999799992---9888-14799
No 180
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=51.35 E-value=5.9 Score=17.60 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=22.7
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9997088--99988999986589011458999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
..+.++| ++|+.+||+..|++++++-+...
T Consensus 15 ~l~~~~G~~~~s~~~Ia~~agvs~~~iY~~F~ 46 (74)
T d2g7sa1 15 TLIIRGGYNSFSYADISQVVGIRNASIHHHFP 46 (74)
T ss_dssp HHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC
T ss_conf 99998591506799999987818416988883
No 181
>d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=50.90 E-value=1.2 Score=22.26 Aligned_cols=67 Identities=22% Similarity=0.191 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC----CCCEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899988999986589011458999999841321256743----22300000178889999999999999999
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSE----DKRTYAINLTEMGQELYEVASDFAIEREK 120 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~----D~R~~~l~LT~~G~~~~~~~~~~~~~~~~ 120 (148)
..|++|+|||+.+|.|+++||-+-++- ..-|++....- .--......-++|.++++--..+..+..+
T Consensus 3 ~kG~tQ~eIA~~LgTSraNIs~IEkrA--~eNIekAr~Tl~~~~~l~Ap~~i~i~~GtDl~~iP~~i~~~aD~ 73 (122)
T d1nr3a_ 3 ERGWSQKKIARELKTTRQNVSAIERKA--MENIEKSRNTLDFVKSLKSPVRILCRRGDTLDEIIKRLLEESNK 73 (122)
T ss_dssp CCSCSSCSTHHHHHHCCSSSCCHHHHH--HTTCSSSSCHHHHHHHHCCCEEEEECCGGGHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 678898899998556565799999998--88899999999999860897899976998678888999987645
No 182
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=50.83 E-value=7 Score=17.08 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=24.2
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9997088--9998899998658901145899999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVKKL 78 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L 78 (148)
..+..+| +.|+.+||+..|++++++.+--+..
T Consensus 15 ~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~~K 48 (73)
T d2fx0a1 15 KKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGK 48 (73)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTSCHHHHHHHHTSH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCH
T ss_conf 9999869351769999998784864999888499
No 183
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=50.62 E-value=7.1 Score=17.07 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=24.0
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99997088--999889999865890114589999
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
+..+.++| ++|+.+|++..+++++++-+.-..
T Consensus 10 ~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~s 43 (70)
T d2gena1 10 LACFSEHGVDATTIEMIRDRSGASIGSLYHHFGN 43 (70)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 9999985924087999999879587799989879
No 184
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=50.46 E-value=6.3 Score=17.41 Aligned_cols=30 Identities=3% Similarity=0.212 Sum_probs=22.9
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9997088--99988999986589011458999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
..+.++| ++|+.+||+..|++++++.+--.
T Consensus 17 ~l~~~~G~~~~s~~~Ia~~agvs~~~lY~~F~ 48 (77)
T d2gfna1 17 ALIAREGISAVTTRAVAEESGWSTGVLNHYFG 48 (77)
T ss_dssp HHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99998590405799999987888779988883
No 185
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=50.42 E-value=8 Score=16.71 Aligned_cols=47 Identities=21% Similarity=0.358 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 899999999708899988999986-----589011458999999841321256743
Q T0617 41 TEWRIISVLSSASDCSVQKISDIL-----GLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 41 ~q~~iL~~l~~~~~~t~~eLa~~l-----~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
.+..|...|..++-.++.||.+.+ .++.+|+||-++.| |.+. .+++.
T Consensus 5 Rq~~I~~li~~~~i~tQ~eL~~~L~~~G~~vTQaTlSRDL~eL---g~vK-v~~~~ 56 (63)
T d2p5ka1 5 RHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLVK-VPTNN 56 (63)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCEE-EEETT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHH---CCEE-EECCC
T ss_conf 9999999998489788999999999869875289988789991---9888-35799
No 186
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=50.08 E-value=7.2 Score=17.02 Aligned_cols=33 Identities=6% Similarity=0.101 Sum_probs=24.6
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99997088--9998899998658901145899999
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKL 78 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L 78 (148)
+..+..+| +.|+.+|++..+++++++.+.-..-
T Consensus 12 ~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~K 46 (68)
T d2d6ya1 12 VAEFARHGIAGARIDRIAAEARANKQLIYAYYGNK 46 (68)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCH
T ss_conf 99999859250679999988784662898887499
No 187
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=49.87 E-value=6.8 Score=17.16 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=23.1
Q ss_pred HHHHCC--CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 997088--999889999865890114589999
Q T0617 48 VLSSAS--DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 48 ~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
.+.+.| +.|+.+||+..|++++++.+--..
T Consensus 13 l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~~ 44 (71)
T d1jt6a1 13 LFIKNGYNATTTGEIVKLSESSKGNLYYHFKT 44 (71)
T ss_dssp HHHHHCTTTCCHHHHHHHTTCCHHHHHHHHSS
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 99985914067999999878587599888849
No 188
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=49.60 E-value=7.7 Score=16.81 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=21.5
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9997088--999889999865890114589
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..+...| +.|+.+||+..+++++++..-
T Consensus 13 ~l~~~~G~~~~si~~Ia~~agvs~~~iy~~ 42 (73)
T d1sgma1 13 RLSQLQGYHATGLNQIVKESGAPKGSLYHF 42 (73)
T ss_dssp HHHHHHCTTTCCHHHHHHHHCCCSCHHHHS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999984924177999999868887799998
No 189
>d1fnna1 a.4.5.11 (A:277-388) CDC6, C-terminal domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=49.38 E-value=8.3 Score=16.60 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHH------CCCCCHH-------HHHHHHCCC---CCHHHHHHHHHHHHHHHHCCCC---CC-CCCEE
Q ss_conf 899989999999970------8899988-------999986589---0114589999998413212567---43-22300
Q T0617 37 GIGMTEWRIISVLSS------ASDCSVQ-------KISDILGLD---KAAVSRTVKKLEEKKYIEVNGH---SE-DKRTY 96 (148)
Q Consensus 37 glt~~q~~iL~~l~~------~~~~t~~-------eLa~~l~i~---~~~vs~~i~~L~~~gli~r~~~---~~-D~R~~ 96 (148)
+++..|-.+|..|.. .++++.+ ++++..+++ ...++.+++.|+..|+|..+.. .+ -+|.+
T Consensus 8 ~Lp~h~klvL~ai~~~~~~~~~~~ittgevy~~Y~~lc~~~~~~pls~rr~~~~l~~Le~lGiI~~r~~~~g~G~rGrt~ 87 (112)
T d1fnna1 8 GLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTT 87 (112)
T ss_dssp HSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CE
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCE
T ss_conf 48998999999999998537988750999999999999981952454999999999998679744332156878888504
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 0001788899999999
Q T0617 97 AINLTEMGQELYEVAS 112 (148)
Q Consensus 97 ~l~LT~~G~~~~~~~~ 112 (148)
.|.+..--...++...
T Consensus 88 ~Isl~~~~~~~l~~~i 103 (112)
T d1fnna1 88 LISIGTEPLDTLEAVI 103 (112)
T ss_dssp EEECCSSCHHHHHHHH
T ss_pred EEEECCCHHHHHHHHH
T ss_conf 8862688089999999
No 190
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=48.14 E-value=8.5 Score=16.53 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=27.3
Q ss_pred CCHHHHHHH-HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999899999-99970889998899998658901145899999
Q T0617 38 IGMTEWRII-SVLSSASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
Q Consensus 38 lt~~q~~iL-~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L 78 (148)
+..-|-.++ ..|..+| +.++.|+.+|++++++.+-++++
T Consensus 18 ~~~~Er~~I~~aL~~~g--n~~~aA~~Lgisr~tL~rKlkk~ 57 (61)
T d1g2ha_ 18 IGFYEAQVLKLFYAEYP--STRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp CSHHHHHHHHHHHHHSC--SHHHHHHHTTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCC--CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999999878--99999999798899999999996
No 191
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=47.65 E-value=7.3 Score=16.97 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=21.6
Q ss_pred HHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 997088--9998899998658901145899
Q T0617 48 VLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 48 ~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
.+...| +.|+.+||+..|++++++.+-.
T Consensus 23 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 52 (81)
T d1rkta1 23 VFKRKGFELTTMKDVVEESGFSRGGVYLYF 52 (81)
T ss_dssp HHHHHCSTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 999859251779999998694988998888
No 192
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=46.98 E-value=9 Score=16.36 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=21.3
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9997088--999889999865890114589
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..+.++| .+|+.+||+..+++++++-+-
T Consensus 18 ~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~ 47 (76)
T d2fd5a1 18 QALLERGAVEPSVGEVMGAAGLTVGGFYAH 47 (76)
T ss_dssp HHHHHHTTTSCCHHHHHHHTTCCGGGGGGT
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCHHHC
T ss_conf 999984913056999999838995500420
No 193
>d1gxqa_ a.4.6.1 (A:) PhoB {Escherichia coli [TaxId: 562]}
Probab=46.30 E-value=9.2 Score=16.30 Aligned_cols=47 Identities=13% Similarity=0.365 Sum_probs=35.3
Q ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHC-----CCCCHHHHHHHHHHHH
Q ss_conf 72899989999999970889--99889999865-----8901145899999984
Q T0617 35 KFGIGMTEWRIISVLSSASD--CSVQKISDILG-----LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~--~t~~eLa~~l~-----i~~~~vs~~i~~L~~~ 81 (148)
...||..++.+|..|..++| ++-.+|.+.+- .+..++...|.+|-++
T Consensus 28 ~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkK 81 (105)
T d1gxqa_ 28 PLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKA 81 (105)
T ss_dssp ECCCCHHHHHHHHHHHHSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 998268877999999857544344999954114788889886558999999988
No 194
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=45.99 E-value=7.3 Score=16.97 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=21.7
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHH
Q ss_conf 9997088--999889999865890114589
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~ 74 (148)
..+.++| +.|+.+||+..|++++++.+.
T Consensus 20 ~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~ 49 (79)
T d2oi8a1 20 EQIATAGASALSLNAIAKRMGMSGPALYRY 49 (79)
T ss_dssp HHHHHHCTTSCCHHHHHHHTTCCHHHHHTT
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCHHHH
T ss_conf 999986903067999999867997744551
No 195
>d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
Probab=45.77 E-value=9.4 Score=16.24 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=29.7
Q ss_pred HHHHHH-HCCCCCHHHHHHHHC-CCCCHHHHHHHHHHHH
Q ss_conf 999997-088999889999865-8901145899999984
Q T0617 45 IISVLS-SASDCSVQKISDILG-LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 45 iL~~l~-~~~~~t~~eLa~~l~-i~~~~vs~~i~~L~~~ 81 (148)
+..+|. +.-+.+..+|+..+| -+++||...+++.++.
T Consensus 49 ia~yL~r~~t~~sl~~IG~~fg~rdHsTV~~a~kki~~~ 87 (110)
T d1l8qa1 49 IAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEE 87 (110)
T ss_dssp HHHHHHHHHHCCCHHHHHHHSSCCCSTHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 999999987089999999995899710999999999999
No 196
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=45.60 E-value=6.5 Score=17.29 Aligned_cols=29 Identities=14% Similarity=0.359 Sum_probs=22.0
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9997088--9998899998658901145899
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
..+..+| +.|..+|++..|++++++.+-.
T Consensus 16 ~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F 46 (75)
T d2hyja1 16 EIASEEGLDGITIGRLAEELEMSKSGVHKHF 46 (75)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTCCHHHHHTTC
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 9999759030769999998890989998888
No 197
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=45.49 E-value=8.2 Score=16.63 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=23.1
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9997088--999889999865890114589999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
..+.++| ++|+.+||+..+++++++.+-...
T Consensus 17 ~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~F~~ 49 (68)
T d2id3a1 17 DALAADGFDALDLGEIARRAGVGKTTVYRRWGT 49 (68)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 999984934077999999978688799999859
No 198
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=45.21 E-value=8.9 Score=16.40 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=22.5
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9997088--99988999986589011458999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
..+.+.| +.|+.+||+..|++++++-+...
T Consensus 15 ~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~ 46 (69)
T d2fq4a1 15 ELLLESGFKAVTVDKIAERAKVSKATIYKWWP 46 (69)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99998392407799999997858879999987
No 199
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=44.92 E-value=7.9 Score=16.76 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=22.5
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 99997088--9998899998658901145899
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
+..+.++| +.|+.+||+..|++++++-.--
T Consensus 11 ~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F 42 (69)
T d2np5a1 11 FDVAAESGLEGASVREVAKRAGVSIGAVQHHF 42 (69)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99999849140679999988398887998888
No 200
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=44.92 E-value=5.7 Score=17.67 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=24.0
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99997088--999889999865890114589999
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
+..+..+| ++|+.+||+..|++++++.+--..
T Consensus 13 ~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F~~ 46 (75)
T d2id6a1 13 VEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKN 46 (75)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 9999983935167999998849988899888879
No 201
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=44.81 E-value=8.6 Score=16.52 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 8999889999865890114589999
Q T0617 53 SDCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 53 ~~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
.+.|+.+|++..|++++++.+.-..
T Consensus 23 ~~~ti~~Ia~~agvs~~t~y~~F~~ 47 (72)
T d1pb6a1 23 HGTRLEQIAELAGVSKTNLLYYFPS 47 (72)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHSSS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 5067999999869786799988869
No 202
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.53 E-value=5.1 Score=18.00 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=22.9
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9998658901145899999984132125674
Q T0617 60 ISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
Q Consensus 60 La~~l~i~~~~vs~~i~~L~~~gli~r~~~~ 90 (148)
+...+..+.+.+-+.|..|..+||++|..+.
T Consensus 52 l~~~F~p~~~~iK~~Ie~LIereYi~R~~~~ 82 (90)
T d1ldja1 52 LSSRFKPRVPVIKKCIDILIEKEYLERVDGE 82 (90)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHTTSEEECSSS
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7465899989999999999865787358999
No 203
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=44.47 E-value=9.8 Score=16.11 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=23.2
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9997088--999889999865890114589999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
..+...| +.|+.+||+..|++++++-.....
T Consensus 16 ~l~~~~G~~~~si~~Ia~~agvs~~~~y~~F~s 48 (71)
T d1ui5a1 16 DLFDRRGYESTTLSEIVAHAGVTKGALYFHFAA 48 (71)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 999985946267999999879487699989829
No 204
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=43.51 E-value=7.4 Score=16.94 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=37.3
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCC
Q ss_conf 999997088999889999865890114589999998413212567432230000017
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLT 101 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT 101 (148)
+|..|....|.|...||..++.+..-|...+..+-. .-..+|+|.+-+-||
T Consensus 7 LLr~LA~G~PVs~~~LA~alg~~~~eV~~aL~~~p~------tEyD~~G~ivG~GLT 57 (60)
T d1s6la1 7 LLRELAKGRPVSRTTLAGILDWPAERVAAVLEQATS------TEYDKDGNIIGYGLT 57 (60)
T ss_dssp HHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHTTCCS------SCEETTTEECCCCSS
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCC------CEECCCCCEEEEEEE
T ss_conf 999994799858999998958999999999985888------616689978855300
No 205
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=42.55 E-value=9.1 Score=16.34 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=22.2
Q ss_pred HHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 997088--99988999986589011458999
Q T0617 48 VLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 48 ~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
.+..+| +.|+.+|++..|++++++.+--.
T Consensus 13 l~~~~G~~~~ti~~Ia~~agvs~~~~y~~F~ 43 (72)
T d1vi0a1 13 VIAENGYHQSQVSKIAKQAGVADGTIYLYFK 43 (72)
T ss_dssp HHHHHCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 9998590415599999987949879988883
No 206
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=41.42 E-value=9.1 Score=16.33 Aligned_cols=30 Identities=10% Similarity=0.243 Sum_probs=22.2
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9997088--99988999986589011458999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
..+.+.| ++|+.+||+.++++++++-+..+
T Consensus 15 ~l~~~~g~~~~si~~ia~~~gvs~~~~y~hF~ 46 (68)
T d2g7la1 15 ALMRAEGLEKVTMRRLAQELDTGPASLYVYVA 46 (68)
T ss_dssp HHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCC
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf 99998490307899999997828767628775
No 207
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=41.39 E-value=11 Score=15.80 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=30.5
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHC-CCCCHHHHHHHHHHH
Q ss_conf 999999997088999889999865-890114589999998
Q T0617 42 EWRIISVLSSASDCSVQKISDILG-LDKAAVSRTVKKLEE 80 (148)
Q Consensus 42 q~~iL~~l~~~~~~t~~eLa~~l~-i~~~~vs~~i~~L~~ 80 (148)
...++..+.+.-+.+..+|++.+| -+++||...+++.++
T Consensus 34 R~va~yL~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kki~~ 73 (94)
T d1j1va_ 34 RQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQ 73 (94)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 9999999999838999999999589970199999999999
No 208
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=40.93 E-value=6.9 Score=17.12 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=23.0
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9997088--999889999865890114589999
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
..+.+.| +.|+.+||+..+++++++.+-.+.
T Consensus 10 ~l~~~~G~~~~s~~~Ia~~agvs~~tiy~~F~~ 42 (62)
T d2vkva1 10 ELGNEVGIEGLTTRKLAQKLGVEQPTLYWHVKN 42 (62)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSCC
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 999983935178999998809888899988879
No 209
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=40.25 E-value=11 Score=15.69 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999889999865890114589999
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
+.|+.+|++..|++++++.+--+.
T Consensus 20 ~~t~~~Ia~~agvs~~~~Y~~F~~ 43 (70)
T d2hkua1 20 GVPITQICAAAGAHPNQVTYYYGS 43 (70)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHHSS
T ss_pred CCHHHHHHHHHCCCHHHHHHCCCC
T ss_conf 744999998878885368730899
No 210
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=40.12 E-value=11 Score=15.68 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=26.6
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999708899988999986589011458999999
Q T0617 45 IISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
Q Consensus 45 iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~ 79 (148)
|-..|..++| ++++-|+.+|+++.|+.+-++++-
T Consensus 56 I~~aL~~~~G-n~~~AA~~LGI~R~TL~~Klk~~g 89 (91)
T d1ntca_ 56 LTTALRHTQG-HKQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHHHHHHTTT-CTTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9999999599-599999997988999999999878
No 211
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.83 E-value=4.1 Score=18.63 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=21.5
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 6589011458999999841321256743
Q T0617 64 LGLDKAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
Q Consensus 64 l~i~~~~vs~~i~~L~~~gli~r~~~~~ 91 (148)
+..+.+.+-+.|..|..+||++|..+..
T Consensus 58 F~p~~~~iK~~Ie~LIekeYi~R~~~d~ 85 (92)
T d1iuya_ 58 FLPSPVVIKKRIEGLIEREYLARTPEDR 85 (92)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEECSSCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8999999999999998634662179999
No 212
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=39.12 E-value=12 Score=15.57 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=22.9
Q ss_pred HHHHHHH-CC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999970-88--9998899998658901145899
Q T0617 45 IISVLSS-AS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 45 iL~~l~~-~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
.+..+.+ +| +.|+.+||+..|++++++-+..
T Consensus 11 a~~l~~e~~G~~~~t~~~Ia~~agvs~~~iy~hF 44 (68)
T d1z0xa1 11 AFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYF 44 (68)
T ss_dssp HHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 9999987679231679999998772656899962
No 213
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=38.89 E-value=7.8 Score=16.78 Aligned_cols=32 Identities=9% Similarity=0.269 Sum_probs=23.7
Q ss_pred HHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99997088--999889999865890114589999
Q T0617 46 ISVLSSAS--DCSVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 46 L~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
+..+..+| +.|+.+|++..+++++++..--..
T Consensus 12 ~~l~~~~G~~~~ti~~Ia~~agvs~~~ly~~F~~ 45 (72)
T d2g3ba1 12 ATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKD 45 (72)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHCS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 9999983924077999998859697799988839
No 214
>d1p2fa1 a.4.6.1 (A:121-217) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=37.51 E-value=13 Score=15.41 Aligned_cols=47 Identities=13% Similarity=0.330 Sum_probs=33.8
Q ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH---CCCCCHHHHHHHHHHHH
Q ss_conf 72899989999999970889--9988999986---58901145899999984
Q T0617 35 KFGIGMTEWRIISVLSSASD--CSVQKISDIL---GLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~--~t~~eLa~~l---~i~~~~vs~~i~~L~~~ 81 (148)
...||..++.+|..+..+++ ++-.+|.+.+ ..+..++...|.+|-++
T Consensus 23 ~i~Lt~~E~~lL~~L~~~~g~vvsr~~l~~~vw~~~~~~~~l~~~I~rLR~k 74 (97)
T d1p2fa1 23 RIHLPKKEFEILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKA 74 (97)
T ss_dssp ECCCCHHHHHHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 9975899999999876301122446541114650013776511499999999
No 215
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.45 E-value=7.5 Score=16.88 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 889998899998658-90114589999998413212567
Q T0617 52 ASDCSVQKISDILGL-DKAAVSRTVKKLEEKKYIEVNGH 89 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i-~~~~vs~~i~~L~~~gli~r~~~ 89 (148)
.|..+..+.|..+++ .+-.+--+++-||.-|+|++..-
T Consensus 23 ~~~~~L~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~K 61 (67)
T d1cf7a_ 23 DGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSK 61 (67)
T ss_dssp TTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEET
T ss_pred CCEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 983529999999658540247788998815013220567
No 216
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=36.47 E-value=13 Score=15.31 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHC--CCCCHHHHHHHHHHHH
Q ss_conf 99999997088999889999865--8901145899999984
Q T0617 43 WRIISVLSSASDCSVQKISDILG--LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l~--i~~~~vs~~i~~L~~~ 81 (148)
...+.+.+ ..|++..+|++.++ +++..+...++.|.++
T Consensus 12 IEAlLFas-~~Pls~~~L~~~l~~~~~~~~i~~~l~~L~~~ 51 (85)
T d1t6sa1 12 LEALIFSS-EEPVNLQTLSQITAHKFTPSELQEAVDELNRD 51 (85)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999954-89989999999875589999999999999999
No 217
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.20 E-value=13 Score=15.28 Aligned_cols=39 Identities=15% Similarity=0.462 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHH---HCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9998999999997---08899988999986589011458999
Q T0617 38 IGMTEWRIISVLS---SASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 38 lt~~q~~iL~~l~---~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
+...+|.+...|. ....++++++|+..|++.|.+|..++
T Consensus 22 lr~d~~~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~ 63 (94)
T d1ic8a2 22 LQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLN 63 (94)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 965999999999999998688599999998015999999982
No 218
>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.91 E-value=14 Score=15.14 Aligned_cols=44 Identities=16% Similarity=0.321 Sum_probs=37.1
Q ss_pred HHHHHHHHHHCC-CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999997088-99988999986589011458999999841321
Q T0617 42 EWRIISVLSSAS-DCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
Q Consensus 42 q~~iL~~l~~~~-~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~ 85 (148)
+-.||-+|.+.| |....+|++...+++-.+.+++-+|-+.+-|.
T Consensus 3 EQkILQVL~dagspvk~~ql~k~cqVpkk~lNqVL~rlkke~kVs 47 (57)
T d1j75a_ 3 EQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVS 47 (57)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 899999999459834799999997887889999999997555514
No 219
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=33.81 E-value=14 Score=15.03 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=26.2
Q ss_pred HHHHHHHHHHCC--CCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999997088--9998899998658901145899999
Q T0617 42 EWRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKL 78 (148)
Q Consensus 42 q~~iL~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i~~L 78 (148)
-+++|..+...| -++..+||+.++++++.|-+=+.-+
T Consensus 11 Ylr~L~~l~~~g~~~vSS~~La~~~gi~~~qVRKDls~f 49 (74)
T d2dt5a1 11 YLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYF 49 (74)
T ss_dssp HHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999879915969999999796999999879986
No 220
>d1kgsa1 a.4.6.1 (A:124-225) PhoB {Thermotoga maritima [TaxId: 2336]}
Probab=33.22 E-value=15 Score=14.97 Aligned_cols=47 Identities=15% Similarity=0.298 Sum_probs=33.2
Q ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHC-----CCCCHHHHHHHHHHHH
Q ss_conf 72899989999999970889--99889999865-----8901145899999984
Q T0617 35 KFGIGMTEWRIISVLSSASD--CSVQKISDILG-----LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~--~t~~eLa~~l~-----i~~~~vs~~i~~L~~~ 81 (148)
...||+.++.+|..|..+++ ++-.+|.+.+- .+..++...|.+|-++
T Consensus 26 ~v~Lt~~E~~lL~~L~~~~g~vvs~~~l~~~vw~~~~~~~~~~l~~~I~rLRkk 79 (102)
T d1kgsa1 26 EIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKK 79 (102)
T ss_dssp EECCCHHHHHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 998668898999998743433458899987401877555242799999999998
No 221
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=33.11 E-value=15 Score=14.95 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=27.1
Q ss_pred HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 0889998899998658901145899999984
Q T0617 51 SASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 51 ~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
..-|.+++|+|+..+++..++.+..+.+.+.
T Consensus 59 ~~~~~t~~eIa~~~~is~~ti~k~yk~i~~~ 89 (98)
T d1aisb1 59 LKVPRTLDEIADIARVDKKEIGRSYRFIARN 89 (98)
T ss_dssp HTCCCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 3999889999999798899999999999998
No 222
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=32.83 E-value=15 Score=14.92 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=26.4
Q ss_pred HHHHH-HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999-99970889998899998658901145899999
Q T0617 42 EWRII-SVLSSASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
Q Consensus 42 q~~iL-~~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L 78 (148)
+-.++ ..+...+ -++++-|+.+|++++++.+.++++
T Consensus 50 E~~~i~~aL~~~~-gn~~~aA~~LGisR~tL~~klk~~ 86 (89)
T d1etxa_ 50 EQPLLDMVMQYTR-GNATRAALMMGINRGTLRKKLKKY 86 (89)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999929-969999999897899999999986
No 223
>d1d1la_ a.35.1.2 (A:) cro lambda repressor {Bacteriophage lambda [TaxId: 10710]}
Probab=32.35 E-value=15 Score=14.87 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=20.4
Q ss_pred HHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9708899988999986589011458999
Q T0617 49 LSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
Q Consensus 49 l~~~~~~t~~eLa~~l~i~~~~vs~~i~ 76 (148)
+..+| |...|+.+|+..+++|+.+.
T Consensus 11 v~~~G---QaKaA~~LGv~Q~AIsKAir 35 (61)
T d1d1la_ 11 AMRFG---QTKTAKDLGVYQSAINKAIH 35 (61)
T ss_dssp HHHHC---HHHHHHHHTCCTHHHHHHHH
T ss_pred HHHHC---HHHHHHHCCCCHHHHHHHHH
T ss_conf 99977---59899982964889999996
No 224
>d3bz6a1 a.4.5.75 (A:13-96) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=32.03 E-value=15 Score=14.84 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHC----C---CCCHHHHHHH----------HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEC
Q ss_conf 28999899999999708----8---9998899998----------6589011458999999841321256743223000
Q T0617 36 FGIGMTEWRIISVLSSA----S---DCSVQKISDI----------LGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYA 97 (148)
Q Consensus 36 ~glt~~q~~iL~~l~~~----~---~~t~~eLa~~----------l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~ 97 (148)
..|+..|.+||.+|-+. | |+|...|... |.++-+.|...++.|.++|+|....+ .|...
T Consensus 5 ~~Ls~~E~RVlG~LiEK~~TTPd~YPLsLNaL~~aCNQKsnR~PVm~l~E~eV~~ald~L~~~~Lv~~~~g---sRv~k 80 (84)
T d3bz6a1 5 LQLNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRLVMG---SRADR 80 (84)
T ss_dssp CCBCHHHHHHHHHHHHHHHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEEEECC---SSCCE
T ss_pred CCCCHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC---CCCCC
T ss_conf 10588897788752000235877676269999988716466676505899999999999987888686306---77644
No 225
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=30.53 E-value=16 Score=14.68 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 889998899998658901145899999984
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
+-+.+++|+++..+++..++.+..+.|.+.
T Consensus 58 ~~~~t~~eIa~~~~vs~~tI~~~yk~l~~~ 87 (95)
T d1aisb2 58 GEKRTQREVAEVARVTEVTVRNRYKELVEK 87 (95)
T ss_dssp TCCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999689999999898899999999999998
No 226
>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]}
Probab=30.34 E-value=16 Score=14.65 Aligned_cols=34 Identities=9% Similarity=0.277 Sum_probs=28.4
Q ss_pred HHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9970889998899998658901145899999984
Q T0617 48 VLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 48 ~l~~~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
+..+..|.+..+||...++|..++-++|+++.+.
T Consensus 60 I~~ef~G~n~~eLA~kY~lS~~~I~~Ii~~~rk~ 93 (94)
T d1rr7a_ 60 IWNDFNGRNVSELTTRYGVTFNTVYKAIRRMRRL 93 (94)
T ss_dssp HHHHCCSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 9999089989999999897799999999997723
No 227
>d1t98a1 a.4.5.65 (A:8-118) Chromosome partition protein MukF (KicB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.68 E-value=17 Score=14.58 Aligned_cols=74 Identities=7% Similarity=0.179 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHH------CCCCCHHHHHHHHC-------CCC----CHHHHHHHHHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 899989999999970------88999889999865-------890----1145899999984132125674322300000
Q T0617 37 GIGMTEWRIISVLSS------ASDCSVQKISDILG-------LDK----AAVSRTVKKLEEKKYIEVNGHSEDKRTYAIN 99 (148)
Q Consensus 37 glt~~q~~iL~~l~~------~~~~t~~eLa~~l~-------i~~----~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~ 99 (148)
.|+......|..|+- .|++.-.+|-+.+. -+. ..++..|+.|++..++.|-.+..--+.-.+.
T Consensus 16 ~L~terLaFLlaIa~~n~er~d~e~~E~~LiD~F~~Vs~~feq~~et~~~RANnAINdlv~QRlLnRf~se~~~g~~iYr 95 (111)
T d1t98a1 16 SLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYR 95 (111)
T ss_dssp EECHHHHHHHHHHHHHHHSCCSSCBCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTSEEECC--------CEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCEEE
T ss_conf 38689999999999980164413101448999999998644322005989988899999999999970201016612144
Q ss_pred CCHHHHHHHHH
Q ss_conf 17888999999
Q T0617 100 LTEMGQELYEV 110 (148)
Q Consensus 100 LT~~G~~~~~~ 110 (148)
|||-|..+.+-
T Consensus 96 LTpLgigI~dY 106 (111)
T d1t98a1 96 LTPLGIGITDY 106 (111)
T ss_dssp ECHHHHHHHHH
T ss_pred ECHHHHHHHHH
T ss_conf 13123016776
No 228
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.68 E-value=17 Score=14.47 Aligned_cols=29 Identities=10% Similarity=0.395 Sum_probs=21.7
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 65890114589999998413212567432
Q T0617 64 LGLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 64 l~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
+..+++.+-+.|..|..++|++|..+..+
T Consensus 50 f~~~~~~iK~~Ie~LIereYi~R~~~~~~ 78 (84)
T d2hyec1 50 FPVKPGDLKKRIESLIDRDYMERDKDNPN 78 (84)
T ss_dssp SCCCHHHHHHHHHHHHHTTSCBCCSSCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 89998999999999986227624899996
No 229
>d1ys7a1 a.4.6.1 (A:128-233) Transcriptional regulatory protein PrrA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.92 E-value=18 Score=14.38 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=34.3
Q ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHC-C----CCCHHHHHHHHHHHH
Q ss_conf 72899989999999970889--99889999865-8----901145899999984
Q T0617 35 KFGIGMTEWRIISVLSSASD--CSVQKISDILG-L----DKAAVSRTVKKLEEK 81 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~--~t~~eLa~~l~-i----~~~~vs~~i~~L~~~ 81 (148)
...||..+|.+|.++..+++ ++-.+|.+.+- - +..++...|.+|-++
T Consensus 30 ~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkk 83 (106)
T d1ys7a1 30 DVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRK 83 (106)
T ss_dssp ECCCCHHHHHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 997778896899988630134445899886514877777722199999999998
No 230
>d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]}
Probab=27.83 E-value=16 Score=14.71 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.0
Q ss_pred CHHHHHHHHCCCCCHHHHH
Q ss_conf 9889999865890114589
Q T0617 56 SVQKISDILGLDKAAVSRT 74 (148)
Q Consensus 56 t~~eLa~~l~i~~~~vs~~ 74 (148)
+...+|..+|+++++|++.
T Consensus 12 ~~~k~A~algis~~AVsqW 30 (61)
T d1rzsa_ 12 TQRAVAKALGISDAAVSQW 30 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHC
T ss_pred CHHHHHHHHCCCHHHHHHH
T ss_conf 7999999969989999988
No 231
>d1opca_ a.4.6.1 (A:) OmpR {Escherichia coli [TaxId: 562]}
Probab=26.88 E-value=19 Score=14.26 Aligned_cols=47 Identities=13% Similarity=0.223 Sum_probs=33.4
Q ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHHC-----CCCCHHHHHHHHHHHH
Q ss_conf 72899989999999970889--99889999865-----8901145899999984
Q T0617 35 KFGIGMTEWRIISVLSSASD--CSVQKISDILG-----LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~--~t~~eLa~~l~-----i~~~~vs~~i~~L~~~ 81 (148)
...||+.++.+|..+..+++ ++-.+|.+.+- .+..++...|.+|-++
T Consensus 22 ~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vwg~~~~~~~~~l~~~I~rLRkk 75 (99)
T d1opca_ 22 PMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRM 75 (99)
T ss_dssp EECCCHHHHHHHHHHHHSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHCCCEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 997699999999999743640213999998752876554434188999999998
No 232
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=24.80 E-value=20 Score=14.01 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 999999970889998899998658901145899
Q T0617 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 43 ~~iL~~l~~~~~~t~~eLa~~l~i~~~~vs~~i 75 (148)
..|+..|...| .|..+|+..-|++++++...+
T Consensus 12 adI~AaL~krG-~sLa~lsr~~gls~stl~naL 43 (74)
T d1nera_ 12 ADVIAGLKKRK-LSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp HHHHHHHTTSS-CCHHHHHHHHSCCHHHHHHTT
T ss_pred HHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999968-879999999099878999998
No 233
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.38 E-value=21 Score=13.96 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=28.6
Q ss_pred HHHHHHH--CCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9999970--889998899998658901145899999984
Q T0617 45 IISVLSS--ASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 45 iL~~l~~--~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
++...+. .-+.|+.|+++..+++..++.+..+.|...
T Consensus 50 ~iY~a~r~~~~~~t~~eIa~~~~vs~~tI~k~yk~l~~~ 88 (109)
T d1vola2 50 AIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPR 88 (109)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999981899899999999898999999999999998
No 234
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.32 E-value=21 Score=13.96 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 889998899998658901145899999984
Q T0617 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
Q Consensus 52 ~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~ 81 (148)
.-|.++.|+++..+++..++.+..+.+.+.
T Consensus 60 ~~p~t~~eIa~~~~i~~~~i~k~~k~i~~~ 89 (95)
T d1vola1 60 GVPRTFKEICAVSRISKKEIGRCFKLILKA 89 (95)
T ss_dssp TCCCCHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 777889999989699799999999999999
No 235
>d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=24.13 E-value=9 Score=16.37 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=22.1
Q ss_pred HHHHHCC--CCCHHHHHHHHCCCCCHHHHHH
Q ss_conf 9997088--9998899998658901145899
Q T0617 47 SVLSSAS--DCSVQKISDILGLDKAAVSRTV 75 (148)
Q Consensus 47 ~~l~~~~--~~t~~eLa~~l~i~~~~vs~~i 75 (148)
..+.++| ..|+.+||+..+++++++-+--
T Consensus 7 ~l~~~~G~~~~s~~~IA~~agvs~~~ly~~F 37 (65)
T d2np3a1 7 VCFAERGFDATSLRRIAETAGVDQSLVHHFY 37 (65)
T ss_dssp HHC---------------------------C
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 9999879040779999998786887999888
No 236
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=22.86 E-value=22 Score=13.77 Aligned_cols=24 Identities=38% Similarity=0.270 Sum_probs=18.7
Q ss_pred CCCCCCEECCCCCHHHHHHHHHHH
Q ss_conf 743223000001788899999999
Q T0617 89 HSEDKRTYAINLTEMGQELYEVAS 112 (148)
Q Consensus 89 ~~~D~R~~~l~LT~~G~~~~~~~~ 112 (148)
..-|.+.+.+.||++|.+.+++..
T Consensus 24 Y~iDek~rsV~LTe~G~~~vE~~l 47 (122)
T d1tf5a1 24 YTYDIKTKAVQLTEEGMTKAEKAF 47 (122)
T ss_dssp BCCCSSSCCCCBCHHHHHHHHHHT
T ss_pred EEEECCCCEEEEECCHHHHHHHHC
T ss_conf 898637667666403899998851
No 237
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=22.40 E-value=23 Score=13.71 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9988999986589011458999999841321
Q T0617 55 CSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~ 85 (148)
-+.+++|+.+|+++.++ ..-++.|++.
T Consensus 4 ytI~evA~~~gvs~~tl----R~Ye~~GLl~ 30 (118)
T d1r8ea1 4 YSIGEVSKLANVSIKAL----RYYDKIDLFK 30 (118)
T ss_dssp EEHHHHHHHHTCCHHHH----HHHHHTTSSC
T ss_pred CCHHHHHHHHCCCHHHH----HHHHHCCCCC
T ss_conf 01999999989699999----9999858855
No 238
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=21.59 E-value=23 Score=13.61 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999889999865890114589999998413212567432
Q T0617 54 DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 54 ~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
.+|++++|..++++ +-+++..|...|+- + ++.|
T Consensus 2 dvTVk~lA~~v~~~---vd~Ll~Ql~~AGl~-k--s~~D 34 (49)
T d1nd9a_ 2 DVTIKTLAAERQTS---VERLVQQFADAGIR-K--SADD 34 (49)
T ss_dssp EECTTHHHHHHSSS---HHHHHHHHHHHTSC-C--SSSS
T ss_pred CCCHHHHHHHHCCC---HHHHHHHHHHCCCC-C--CCCC
T ss_conf 44499999998959---99999999983899-9--9888
No 239
>d2hgca1 a.4.5.77 (A:5-82) Uncharacterized protein YjcQ {Bacillus subtilis [TaxId: 1423]}
Probab=21.39 E-value=24 Score=13.58 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=46.9
Q ss_pred HHHHHHHHHH-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECC----CCCHHHHHHHHH
Q ss_conf 9999999970-88999889999865890114589999998413212567432230000----017888999999
Q T0617 42 EWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAI----NLTEMGQELYEV 110 (148)
Q Consensus 42 q~~iL~~l~~-~~~~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l----~LT~~G~~~~~~ 110 (148)
.|.+|..|.+ +-|++-.+ +|++.-..--.|+-|.+.|||.-.-.++|+ -..+ .||++|..++.+
T Consensus 3 ryailkeifegntplsend----igvtedqfddavnflkregyiigvhysddr-phlyklgpeltekgenylke 71 (78)
T d2hgca1 3 RYAILKEIFEGNTPLSEND----IGVTEDQFDDAVNFLKREGYIIGVHYSDDR-PHLYKLGPELTEKGENYLKE 71 (78)
T ss_dssp HHHHHHHHHHHCSCCCHHH----HTSCHHHHHHHHHHHHHHTSEECCEESSSS-EECCSSCCEECHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHHHHHHHCCEEEEEECCCCC-HHHHHHCHHHHHHHHHHHHH
T ss_conf 5899999971899775245----475366765899988753758877616897-08776283666767878863
No 240
>d1kgsa1 a.4.6.1 (A:124-225) PhoB {Thermotoga maritima [TaxId: 2336]} SCOP: d1ys7a1 d1gxqa_ d1qqia_ d1gxpa_ d1gxpb_ d1gxpe_ d1p2fa1
Probab=21.13 E-value=24 Score=13.54 Aligned_cols=47 Identities=15% Similarity=0.329 Sum_probs=32.9
Q ss_pred HCCCCHHHHHHHHHHHHCCC--CCHHHHHHHH-C----CCCCHHHHHHHHHHHH
Q ss_conf 72899989999999970889--9988999986-5----8901145899999984
Q T0617 35 KFGIGMTEWRIISVLSSASD--CSVQKISDIL-G----LDKAAVSRTVKKLEEK 81 (148)
Q Consensus 35 ~~glt~~q~~iL~~l~~~~~--~t~~eLa~~l-~----i~~~~vs~~i~~L~~~ 81 (148)
...||+.++.+|..+..++| ++-.+|.+.+ + .+..++...|.+|-++
T Consensus 26 ~i~Lt~~E~~lL~~L~~~~g~vvsr~~l~~~vW~~~~~~~~~~i~~~I~rLRkk 79 (102)
T d1kgsa1 26 EIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKK 79 (102)
T ss_dssp EECCCHHHHHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 876088999999999836687889899986217866544124698999999997
No 241
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=21.04 E-value=24 Score=13.53 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=18.6
Q ss_pred CHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9889999865890114589999
Q T0617 56 SVQKISDILGLDKAAVSRTVKK 77 (148)
Q Consensus 56 t~~eLa~~l~i~~~~vs~~i~~ 77 (148)
|..+||...|++++++.+--..
T Consensus 33 t~~~Ia~~agvs~~~~Y~~F~s 54 (88)
T d1t33a1 33 TTRDIAALAGQNIAAITYYFGS 54 (88)
T ss_dssp CHHHHHHHHTSCHHHHHHHHSS
T ss_pred CHHHHHHHHCCCHHHHHCCCCC
T ss_conf 7999998839984431001989
No 242
>d1aoya_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=20.94 E-value=24 Score=13.52 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=27.4
Q ss_pred HHHHHCCCCCHHHHHHHH---C---CCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999708899988999986---5---890114589999998413212567432
Q T0617 47 SVLSSASDCSVQKISDIL---G---LDKAAVSRTVKKLEEKKYIEVNGHSED 92 (148)
Q Consensus 47 ~~l~~~~~~t~~eLa~~l---~---i~~~~vs~~i~~L~~~gli~r~~~~~D 92 (148)
..|..++-.++.||.+.+ | ++.+|+||-++.| |.+. .+++..
T Consensus 16 ~li~~~~i~tQ~eL~~~L~~~G~~~vTQaTiSRDL~eL---g~vK-v~~~~g 63 (78)
T d1aoya_ 16 ALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKF---GAVR-TRNAKM 63 (78)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHTCSSCCHHHHHHHHHHH---TCEE-EECTTS
T ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH---CCEE-EECCCC
T ss_conf 99984886789999999998398501098899999992---9888-347999
No 243
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=20.63 E-value=12 Score=15.64 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=22.3
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 998899998658901145899999984132125
Q T0617 55 CSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
Q Consensus 55 ~t~~eLa~~l~i~~~~vs~~i~~L~~~gli~r~ 87 (148)
.+..+||+.+|++..|++..++ .|+=...
T Consensus 3 Vnk~~lA~iFGVS~~TI~~W~~----~G~Pv~~ 31 (68)
T d1j9ia_ 3 VNKKQLADIFGASIRTIQNWQE----QGMPVLR 31 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTT----TTCCCSS
T ss_pred CCHHHHHHHHCCCHHHHHHHHH----CCCCEEC
T ss_conf 6899999996998899999998----8998422
Done!