Query T0618 3NRH, Bacteroides fragilis, 182 residues
Match_columns 182
No_of_seqs 52 out of 54
Neff 4.7
Searched_HMMs 22458
Date Thu Jul 22 14:59:49 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0618.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0618.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5o_A CADD-like protein of un 34.6 16 0.0007 15.9 2.0 22 14-35 46-67 (244)
2 2jif_A Short/branched chain sp 28.7 19 0.00083 15.5 1.6 51 8-58 28-81 (404)
3 2z9e_A Cellulose synthase oper 27.0 28 0.0012 14.4 3.5 60 14-94 22-82 (167)
4 2ds2_A Sweet protein mabinlin- 20.5 28 0.0012 14.4 1.2 24 142-167 2-25 (33)
5 1rx0_A Acyl-COA dehydrogenase 18.1 42 0.0019 13.4 2.4 52 7-58 17-71 (393)
6 3gm3_A Protein tyrosine kinase 13.7 55 0.0024 12.7 3.3 82 76-164 54-135 (153)
7 1k04_A FADK 1, focal adhesion 12.2 61 0.0027 12.4 2.0 82 76-164 64-145 (162)
8 1egd_A Medium chain acyl-COA d 12.2 61 0.0027 12.4 2.6 52 8-59 15-69 (396)
9 2eba_A Putative glutaryl-COA d 11.2 62 0.0028 12.4 1.0 72 8-85 10-84 (385)
10 1toh_A Tyroh, tyrosine hydroxy 10.8 68 0.003 12.1 4.6 56 63-118 62-127 (343)
No 1
>3b5o_A CADD-like protein of unknown function; ZP_00108531.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.35A {Nostoc punctiforme pcc 73102} PDB: 3b5p_A*
Probab=34.57 E-value=16 Score=15.90 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999987863106
Q T0618 14 IEFVTVAAEFCAFLERAESMKR 35 (182)
Q Consensus 14 ~eFv~vA~efC~~vE~~~~~~r 35 (182)
.+|....+.|+.|+..+....+
T Consensus 46 ~~~~~~~~~~~~~l~~~~~~~~ 67 (244)
T 3b5o_A 46 QQYSIFPKELVGFTELARRKAL 67 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999998664
No 2
>2jif_A Short/branched chain specific acyl-COA dehydrogenase; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, acetylation; HET: FAD COS; 2.0A {Homo sapiens}
Probab=28.70 E-value=19 Score=15.45 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 12430899999999999999--87863106-88999999999999988886046
Q T0618 8 IFDKNVIEFVTVAAEFCAFL--ERAESMKR-STFVDTTLKILPLLYLKASMLPK 58 (182)
Q Consensus 8 ~~~~~~~eFv~vA~efC~~v--E~~~~~~r-~d~v~~a~~~Lp~Ly~~~s~LP~ 58 (182)
.|+++-..|...+++||+=. ..+.+..+ ..+.....+.|..+++....+|+
T Consensus 28 ~~seeq~~l~~~vr~F~~~~i~p~a~e~d~~~~~p~~~~~~l~~~Gl~~~~vP~ 81 (404)
T 2jif_A 28 TFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDP 81 (404)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHTCCCHHHHHHHHHTTTTSSSSCG
T ss_pred CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCH
T ss_conf 999999999999999999768387999986599999999999977998548996
No 3
>2z9e_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule ring, cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 2z9f_A
Probab=26.99 E-value=28 Score=14.44 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=35.1
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9999-999999999987863106889999999999999888860464568876654447857899999999875144102
Q T0618 14 IEFV-TVAAEFCAFLERAESMKRSTFVDTTLKILPLLYLKASMLPKCEMIGDESPETYVTEEIYEVLRINLASILAEKDD 92 (182)
Q Consensus 14 ~eFv-~vA~efC~~vE~~~~~~r~d~v~~a~~~Lp~Ly~~~s~LP~~e~~~d~~~e~~v~ee~y~~lr~~la~lL~~~d~ 92 (182)
--|+ ..|.|||.-+.. ..+..|++.+-.-|+. .--||++++. .+ +...|..+|..+||
T Consensus 22 ~~Fl~ala~Ef~~qag~---eelr~fLr~mG~rlA~----r~PLP~~~Tv---------~d-----LE~~IN~vLa~f~W 80 (167)
T 2z9e_A 22 TLFLQTLSWEIDDQVGI---EVRNELLREVGRGMGT----RIMPPPCQTV---------DK-----LQIELNALLALIGW 80 (167)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTT----TBCCCCCSSH---------HH-----HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHH----HCCCCCCCCH---------HH-----HHHHHHHHHHHCCC
T ss_conf 89999999999873099---9999999999999998----5799876759---------99-----99999999997898
Q ss_pred HH
Q ss_conf 44
Q T0618 93 YL 94 (182)
Q Consensus 93 Y~ 94 (182)
=+
T Consensus 81 G~ 82 (167)
T 2z9e_A 81 GT 82 (167)
T ss_dssp CE
T ss_pred CE
T ss_conf 65
No 4
>2ds2_A Sweet protein mabinlin-2 chain A; plant protein, SEED storage protein; 1.70A {Capparis masaikai}
Probab=20.47 E-value=28 Score=14.44 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999978874899999999999998
Q T0618 142 LAICQENFGLLWGQKLVNTMRALHDV 167 (182)
Q Consensus 142 Lw~w~~sf~~~WG~hl~~alraLh~l 167 (182)
||.||-.|..| |++.+..|-+|-.
T Consensus 2 lwrcqrqflqh--qrlracqrfihrr 25 (33)
T 2ds2_A 2 LWRCQRQFLQH--QRLRACQRFIHRR 25 (33)
T ss_dssp --CHHHHHHHT--GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHH
T ss_conf 24899999999--9999999999999
No 5
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=18.08 E-value=42 Score=13.36 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 2124308999999999999--9987863106-88999999999999988886046
Q T0618 7 VIFDKNVIEFVTVAAEFCA--FLERAESMKR-STFVDTTLKILPLLYLKASMLPK 58 (182)
Q Consensus 7 ~~~~~~~~eFv~vA~efC~--~vE~~~~~~r-~d~v~~a~~~Lp~Ly~~~s~LP~ 58 (182)
..++++-..|.+.|++|+. +...+.+..+ ..|+....+.|..+++....+|+
T Consensus 17 ~~Lt~eq~~~~~~~r~f~~~~l~p~a~e~d~~~~~p~e~~~~l~~~Gl~~~~vP~ 71 (393)
T 1rx0_A 17 MGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQT 71 (393)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCG
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCH
T ss_conf 8999999999999999999867023999987599999999999977998667873
No 6
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} PDB: 3gm1_A 3gm2_A
Probab=13.70 E-value=55 Score=12.68 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999875144102445414000367754202466648999999998999985013333689999999978874899
Q T0618 76 YEVLRINLASILAEKDDYLEVFLPDMAYSDEPIKKNISEDLADIYQDIKDFIFVFQLGLNETMNDSLAICQENFGLLWGQ 155 (182)
Q Consensus 76 y~~lr~~la~lL~~~d~Y~evf~p~~~~sd~~~~~~iSdDLaDIy~dL~~gL~~~~~g~~~~~~eALw~w~~sf~~~WG~ 155 (182)
...+-..|+.||+.+|.-.-.|.+.....-+....-||-|++.....+| |+. +-+.++. ...++-+..+-=+-
T Consensus 54 VK~VG~~LR~Ll~svD~~~~~lp~s~~~eIema~k~LskDm~eLi~~Mk--lAq-q~~~ttL----~~eyrr~MLsaaH~ 126 (153)
T 3gm3_A 54 VKNVGLTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMR--LAQ-QNAVTSL----SEECKRQMLTASHT 126 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HTTTSTT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHCCCHH----HHHHHHHHHHHHHH
T ss_conf 9999999999999999876048687758999999999988999999999--999-8554207----99999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q T0618 156 KLVNTMRAL 164 (182)
Q Consensus 156 hl~~alraL 164 (182)
=+.+|-.-|
T Consensus 127 LAmDaKnLl 135 (153)
T 3gm3_A 127 LAVDAKNLL 135 (153)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 984245799
No 7
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix- exchange dimer, transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Probab=12.23 E-value=61 Score=12.42 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999875144102445414000367754202466648999999998999985013333689999999978874899
Q T0618 76 YEVLRINLASILAEKDDYLEVFLPDMAYSDEPIKKNISEDLADIYQDIKDFIFVFQLGLNETMNDSLAICQENFGLLWGQ 155 (182)
Q Consensus 76 y~~lr~~la~lL~~~d~Y~evf~p~~~~sd~~~~~~iSdDLaDIy~dL~~gL~~~~~g~~~~~~eALw~w~~sf~~~WG~ 155 (182)
...+-..|+.||+.+|.-.-.|.+.....-+....-||-|++.....+| |+. +-+.++. ...|+-+..+-=+-
T Consensus 64 VK~VG~~LR~Ll~svD~~~~~lp~s~~~eIema~kvLskDm~eLi~~Mk--lAQ-q~~~ttL----~~eyrr~MLsaaH~ 136 (162)
T 1k04_A 64 VKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMK--LAQ-QYVMTSL----QQEYKKQMLTAAHA 136 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HTTTSSS----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHCCCHH----HHHHHHHHHHHHHH
T ss_conf 9999999999999999875038687758999999999988999999999--999-8554207----99999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q T0618 156 KLVNTMRAL 164 (182)
Q Consensus 156 hl~~alraL 164 (182)
=|.+|-.-|
T Consensus 137 LAmDaKNLl 145 (162)
T 1k04_A 137 LAVDAKNLL 145 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 985156799
No 8
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=12.21 E-value=61 Score=12.41 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1243089999999999999--987863106-889999999999999888860464
Q T0618 8 IFDKNVIEFVTVAAEFCAF--LERAESMKR-STFVDTTLKILPLLYLKASMLPKC 59 (182)
Q Consensus 8 ~~~~~~~eFv~vA~efC~~--vE~~~~~~r-~d~v~~a~~~Lp~Ly~~~s~LP~~ 59 (182)
.++++-.+|...+++|+.= ...+.+..+ ..|.....+.|..+++....+|+.
T Consensus 15 ~lt~eq~~l~~~~r~f~~~~i~p~a~e~d~~~~~p~~~~~~l~~~Gl~~l~vP~~ 69 (396)
T 1egd_A 15 EFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPEN 69 (396)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHH
T ss_conf 9999999999999999998585007889862999999999999779986689820
No 9
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, structural genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus HB8}
Probab=11.18 E-value=62 Score=12.38 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 124308999999999999--998786310-68899999999999998888604645688766544478578999999998
Q T0618 8 IFDKNVIEFVTVAAEFCA--FLERAESMK-RSTFVDTTLKILPLLYLKASMLPKCEMIGDESPETYVTEEIYEVLRINLA 84 (182)
Q Consensus 8 ~~~~~~~eFv~vA~efC~--~vE~~~~~~-r~d~v~~a~~~Lp~Ly~~~s~LP~~e~~~d~~~e~~v~ee~y~~lr~~la 84 (182)
.++++...|...|++|+. +...+++.. ...+.....+.|..+++....+| .++.+......+... +-+.++
T Consensus 10 ~Ls~e~~~l~~~~r~f~~~~l~p~~~e~d~~~~~p~~~~~~l~~~G~~~~~iP-~~~GG~g~~~~~~~~-----~~~~la 83 (385)
T 2eba_A 10 LLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLP-PEYGGAGVSSAAYGL-----ICYELE 83 (385)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCGGGHHHHHHHTCSSTTSC-GGGTCCCCCHHHHHH-----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC-HHHCCCCCCHHHHHH-----HHHHHH
T ss_conf 28999999999999999975803389999709999999999997799866899-667899999999999-----999876
Q ss_pred H
Q ss_conf 7
Q T0618 85 S 85 (182)
Q Consensus 85 ~ 85 (182)
.
T Consensus 84 ~ 84 (385)
T 2eba_A 84 R 84 (385)
T ss_dssp H
T ss_pred H
T ss_conf 5
No 10
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, pterin CO-substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A*
Probab=10.76 E-value=68 Score=12.13 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHH---HHHHHHHHHHHHCCC--CCHHHHHHCHH-----HCCCCCCCHHHHHHHHHH
Q ss_conf 876654447857---899999999875144--10244541400-----036775420246664899
Q T0618 63 GDESPETYVTEE---IYEVLRINLASILAE--KDDYLEVFLPD-----MAYSDEPIKKNISEDLAD 118 (182)
Q Consensus 63 ~d~~~e~~v~ee---~y~~lr~~la~lL~~--~d~Y~evf~p~-----~~~sd~~~~~~iSdDLaD 118 (182)
|+.-|...+|++ .|..|++++..++.. ...|++.|.-- +..+.-|.-..||+-|..
T Consensus 62 g~piP~v~YT~eE~~tW~~l~~~l~~l~~~~Ac~eyl~gl~~L~~~~g~~~d~IPql~dvs~~L~~ 127 (343)
T 1toh_A 62 GEPIPHVEYTAEEIATWKEVYVTLKGLYATHACREHLEGFQLLERYCGYREDSIPQLEDVSRFLKE 127 (343)
T ss_dssp TSCCCCCCCCHHHHHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHSCCBTTBCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 998988676989999999999999988756315999999999887239986679998999899997
Done!