Query T0618 3NRH, Bacteroides fragilis, 182 residues
Match_columns 182
No_of_seqs 52 out of 54
Neff 4.7
Searched_HMMs 15564
Date Thu Jul 22 15:01:17 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0618.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0618.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ddha2 a.29.3.2 (A:475-655) P 86.0 0.76 4.9E-05 22.7 5.1 122 3-128 36-163 (181)
2 d1w07a2 a.29.3.2 (A:462-659) A 78.4 0.77 5E-05 22.7 2.7 118 7-127 49-172 (198)
3 d1rx0a2 e.6.1.1 (A:10-240) Iso 31.2 14 0.00087 15.3 2.0 21 5-25 6-26 (231)
4 d1buca2 e.6.1.1 (A:1-232) Buty 24.0 14 0.00087 15.3 1.0 18 8-25 4-21 (232)
5 d3c7bb2 d.58.36.2 (B:4-122) Di 14.3 30 0.0019 13.3 0.9 13 13-25 64-76 (119)
6 d1k04a_ a.24.14.1 (A:) FAT dom 13.4 39 0.0025 12.6 2.0 82 76-164 47-128 (142)
7 d1ukwa2 e.6.1.1 (A:32-258) Med 13.3 32 0.0021 13.1 0.9 18 8-25 4-21 (227)
8 d1j8ua_ d.178.1.1 (A:) Phenyla 10.9 47 0.003 12.2 4.8 54 66-119 57-120 (307)
9 d1k04a_ a.24.14.1 (A:) FAT dom 10.7 47 0.003 12.1 2.0 83 76-165 47-129 (142)
10 d2v4jb2 d.58.36.2 (B:2-135) Di 10.3 49 0.0032 12.0 1.3 22 108-129 72-93 (134)
No 1
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=86.03 E-value=0.76 Score=22.75 Aligned_cols=122 Identities=14% Similarity=0.264 Sum_probs=80.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 553321243089999999999999------98786310688999999999999988886046456887665444785789
Q T0618 3 KESQVIFDKNVIEFVTVAAEFCAF------LERAESMKRSTFVDTTLKILPLLYLKASMLPKCEMIGDESPETYVTEEIY 76 (182)
Q Consensus 3 ~~s~~~~~~~~~eFv~vA~efC~~------vE~~~~~~r~d~v~~a~~~Lp~Ly~~~s~LP~~e~~~d~~~e~~v~ee~y 76 (182)
|.....++...++++.+|+-+|.. ++++.... ...+...+..|..||+-..+... .++.-..-.++.++-
T Consensus 36 ~~~~~AwN~~~~~l~~~a~Ah~~~~il~~F~~~i~~~~-~~~~k~vL~~L~~LyaL~~i~~~---~g~fl~~g~ls~~q~ 111 (181)
T d2ddha2 36 KSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLPKIQ-DKAVQAVLRNLCLLYSLYGISQK---GGDFLEGSIITGAQL 111 (181)
T ss_dssp CCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHHHHT---HHHHHHTTSSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCCCHHHH
T ss_conf 99999999889999999999999999999999987378-76799999999999999999986---899982599899999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999875144102445414000367754202466648999999998999
Q T0618 77 EVLRINLASILAEKDDYLEVFLPDMAYSDEPIKKNISEDLADIYQDIKDFIF 128 (182)
Q Consensus 77 ~~lr~~la~lL~~~d~Y~evf~p~~~~sd~~~~~~iSdDLaDIy~dL~~gL~ 128 (182)
..++..+..++...-...-.+..-...+|..+...|.--=.+||..|-+...
T Consensus 112 ~~i~~~i~~L~~~lrp~Av~LVDaF~~~D~~L~S~lG~~DG~vYe~l~~~a~ 163 (181)
T d2ddha2 112 SQVNARILELLTLIRPNAVALVDAFDFKDMTLGSVLGRYDGNVYENLFEWAK 163 (181)
T ss_dssp HHHHHHHHHHHHHHGGGHHHHHHTTCCCHHHHTCSTTCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHCCCCHHHHHHHHHHH
T ss_conf 9999999999999999999886703797888733875457859999999998
No 2
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=78.38 E-value=0.77 Score=22.71 Aligned_cols=118 Identities=15% Similarity=0.200 Sum_probs=75.0
Q ss_pred CCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 2124308999999999999------9987863106889999999999999888860464568876654447857899999
Q T0618 7 VIFDKNVIEFVTVAAEFCA------FLERAESMKRSTFVDTTLKILPLLYLKASMLPKCEMIGDESPETYVTEEIYEVLR 80 (182)
Q Consensus 7 ~~~~~~~~eFv~vA~efC~------~vE~~~~~~r~d~v~~a~~~Lp~Ly~~~s~LP~~e~~~d~~~e~~v~ee~y~~lr 80 (182)
..++.-..+++++|+-+|. |++.+........+...+..|..||+-..+.... ++.-....++.++...++
T Consensus 49 ~awn~~~~~l~~~A~Ah~~~~i~~~F~~~i~~~~~~~~~k~vL~~L~~LyaL~~i~~~~---g~fl~~~~ls~~q~~~l~ 125 (198)
T d1w07a2 49 QGFQELLADLVEAAIAHCQLIVVSKFIAKLEQDIGGKGVKKQLNNLCYIYALYLLHKHL---GDFLSTNCITPKQASLAN 125 (198)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSTTHHHHHHHHHHHHHHHHHHHTH---HHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCHHHHHHHH
T ss_conf 14999999999999999899999999999860379868999999999999999999978---999865987899999999
Q ss_pred HHHHHHCCCCCHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99987514410244541400036775420246664899999999899
Q T0618 81 INLASILAEKDDYLEVFLPDMAYSDEPIKKNISEDLADIYQDIKDFI 127 (182)
Q Consensus 81 ~~la~lL~~~d~Y~evf~p~~~~sd~~~~~~iSdDLaDIy~dL~~gL 127 (182)
+.+..++...-.....+..-...+|......|.--=.+||..|-+-.
T Consensus 126 ~~i~~L~~~Lrp~Av~LVDAF~~pD~~L~SaLG~~DG~vYe~l~~~a 172 (198)
T d1w07a2 126 DQLRSLYTQVRPNAVALVDAFNYTDHYLNSVLGRYDGNVYPKLFEEA 172 (198)
T ss_dssp HHHHHHHHHHGGGHHHHHHTTCCCHHHHTCSTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHCCCCHHHHHHHHHH
T ss_conf 99999999998889888653599878766374067878999999999
No 3
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.19 E-value=14 Score=15.35 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 332124308999999999999
Q T0618 5 SQVIFDKNVIEFVTVAAEFCA 25 (182)
Q Consensus 5 s~~~~~~~~~eFv~vA~efC~ 25 (182)
...-++++-..|.+.+++||.
T Consensus 6 ~~~~Lt~e~~~l~~~~r~F~~ 26 (231)
T d1rx0a2 6 PSMGLNEEQKEFQKVAFDFAA 26 (231)
T ss_dssp TTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
T ss_conf 999989999999999999999
No 4
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}
Probab=24.05 E-value=14 Score=15.33 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 124308999999999999
Q T0618 8 IFDKNVIEFVTVAAEFCA 25 (182)
Q Consensus 8 ~~~~~~~eFv~vA~efC~ 25 (182)
.++++..+|...|++||.
T Consensus 4 ~lt~~~~~l~~~~r~f~~ 21 (232)
T d1buca2 4 NLTDIQQDFLKLAHDFGE 21 (232)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 898999999999999999
No 5
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=14.26 E-value=30 Score=13.33 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999999
Q T0618 13 VIEFVTVAAEFCA 25 (182)
Q Consensus 13 ~~eFv~vA~efC~ 25 (182)
+-+|+.||++||.
T Consensus 64 iR~iadIAdKY~~ 76 (119)
T d3c7bb2 64 VRELCDIADKYSD 76 (119)
T ss_dssp HHHHHHHHHHHST
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999686
No 6
>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.45 E-value=39 Score=12.64 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999875144102445414000367754202466648999999998999985013333689999999978874899
Q T0618 76 YEVLRINLASILAEKDDYLEVFLPDMAYSDEPIKKNISEDLADIYQDIKDFIFVFQLGLNETMNDSLAICQENFGLLWGQ 155 (182)
Q Consensus 76 y~~lr~~la~lL~~~d~Y~evf~p~~~~sd~~~~~~iSdDLaDIy~dL~~gL~~~~~g~~~~~~eALw~w~~sf~~~WG~ 155 (182)
...+-..|+.||+.+|.-.-.|.+.....-+....-||-|++.....+ .|+. +-+.++. ...|+-+..+--+-
T Consensus 47 VK~VG~~Lr~Ll~svD~~~~~lp~~~~~eIema~klLskDm~eLi~~M--klAq-q~~~ttl----~~eyrr~MLsaaH~ 119 (142)
T d1k04a_ 47 VKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM--KLAQ-QYVMTSL----QQEYKKQMLTAAHA 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HTTTSSS----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHCCCHH----HHHHHHHHHHHHHH
T ss_conf 999999999999989987514868775899999999998899999999--9999-9554207----99999999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q T0618 156 KLVNTMRAL 164 (182)
Q Consensus 156 hl~~alraL 164 (182)
=|.+|-.-|
T Consensus 120 LA~DaKnLl 128 (142)
T d1k04a_ 120 LAVDAKNLL 128 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 985156799
No 7
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}
Probab=13.27 E-value=32 Score=13.10 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 124308999999999999
Q T0618 8 IFDKNVIEFVTVAAEFCA 25 (182)
Q Consensus 8 ~~~~~~~eFv~vA~efC~ 25 (182)
.++++-..|...+++||+
T Consensus 4 ~Lteeq~~l~~~~r~f~~ 21 (227)
T d1ukwa2 4 SLTEEQRQLQALARRFAK 21 (227)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 889999999999999999
No 8
>d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo sapiens) [TaxId: 9606]} SCOP: d2paha_ d1mmka_ d1mmta_ d3paha_ d1kw0a_ d1tdwa_ d1phza2 d1toha_ d2toha_ d1mlwa_
Probab=10.90 E-value=47 Score=12.16 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=28.8
Q ss_pred CCCCCCCH---HHHHHHHHHHHHHCCC--CCHHHHHHCH-----HHCCCCCCCHHHHHHHHHHH
Q ss_conf 65444785---7899999999875144--1024454140-----00367754202466648999
Q T0618 66 SPETYVTE---EIYEVLRINLASILAE--KDDYLEVFLP-----DMAYSDEPIKKNISEDLADI 119 (182)
Q Consensus 66 ~~e~~v~e---e~y~~lr~~la~lL~~--~d~Y~evf~p-----~~~~sd~~~~~~iSdDLaDI 119 (182)
-|...+|+ ..|..+++++..++.. ...|++.|.- .+..+.-|.-..||+-|...
T Consensus 57 iP~v~YT~eE~~tW~~l~~~l~~~~~~~Ac~eyl~gl~~L~~~~g~~~d~IPql~dvn~~L~~~ 120 (307)
T d1j8ua_ 57 IPRVEYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQTC 120 (307)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHHCCBTTBCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 8855799889999999999999872133518999999999986188713368989999999871
No 9
>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1k05c_ d1ow8b_ d1ow8c_ d1ow6b_ d1k05a_ d1ow6a_ d1ktma_ d1pv3a_ d1qvxa_ d1k40a_
Probab=10.72 E-value=47 Score=12.12 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999875144102445414000367754202466648999999998999985013333689999999978874899
Q T0618 76 YEVLRINLASILAEKDDYLEVFLPDMAYSDEPIKKNISEDLADIYQDIKDFIFVFQLGLNETMNDSLAICQENFGLLWGQ 155 (182)
Q Consensus 76 y~~lr~~la~lL~~~d~Y~evf~p~~~~sd~~~~~~iSdDLaDIy~dL~~gL~~~~~g~~~~~~eALw~w~~sf~~~WG~ 155 (182)
...+-..|+.||+..|.-...|+.--+..-+....-||-||+....-+ +|+- +-+.++. --.|+-+..+--+.
T Consensus 47 VK~Vg~~LR~Ll~svd~~~~~lp~s~~~eVema~klL~~Dl~eLi~~M--klaQ-q~~~tsl----~~e~rr~mL~aaH~ 119 (142)
T d1k04a_ 47 VKEVGLALRTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKM--KLAQ-QYVMTSL----QQEYKKQMLTAAHA 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HTTTSSS----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHCCHHH----HHHHHHHHHHHHHH
T ss_conf 999999999999999887611672013678999999999899999999--8988-7023667----99999999999778
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q T0618 156 KLVNTMRALH 165 (182)
Q Consensus 156 hl~~alraLh 165 (182)
=|.++-.-|.
T Consensus 120 LA~daKnLld 129 (142)
T d1k04a_ 120 LAVDAKNLLD 129 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9863568999
No 10
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=10.30 E-value=49 Score=12.03 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2024666489999999989999
Q T0618 108 IKKNISEDLADIYQDIKDFIFV 129 (182)
Q Consensus 108 ~~~~iSdDLaDIy~dL~~gL~~ 129 (182)
++..--..||||...-.+|..+
T Consensus 72 lS~~~lR~iadIAdkYg~G~lr 93 (134)
T d2v4jb2 72 MSITHIREMCDIADKYCGGHLR 93 (134)
T ss_dssp EEHHHHHHHHHHHHHHSTTEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEE
T ss_conf 4899999999999997878221
Done!