Query T0619 HmR208A, Haloarcula marismortui, 111 residues
Match_columns 111
No_of_seqs 101 out of 1928
Neff 8.3
Searched_HMMs 22458
Date Thu Jul 22 14:58:59 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0619.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0619.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oxo_A Integrase; DNA-binding 99.5 4E-14 1.8E-18 108.2 10.6 100 1-104 1-101 (103)
2 2key_A Putative phage integras 99.5 1.4E-14 6.2E-19 111.1 6.8 99 2-103 9-108 (112)
3 2kd1_A DNA integration/recombi 99.5 1.5E-13 6.6E-18 104.5 12.0 105 1-107 6-110 (118)
4 2khq_A Integrase; all-alpha, s 99.5 1.6E-13 7.2E-18 104.3 11.5 103 1-107 2-105 (110)
5 1a0p_A Site-specific recombina 99.5 9.5E-14 4.2E-18 105.8 9.3 99 5-104 4-104 (290)
6 2kiw_A INT protein; alpha, str 99.5 3.7E-13 1.6E-17 102.0 10.9 102 2-107 1-102 (111)
7 1xo0_A Recombinase CRE; CRE re 99.5 3.4E-13 1.5E-17 102.2 10.0 92 5-97 3-96 (324)
8 2kkp_A Phage integrase; SAM-li 99.5 1.3E-13 5.8E-18 104.9 7.3 105 1-107 7-112 (117)
9 1z19_A Integrase; protein-DNA 99.4 1.1E-12 4.7E-17 99.1 11.7 101 1-105 1-102 (283)
10 2kob_A Uncharacterized protein 99.4 1.6E-12 7E-17 98.1 11.1 101 1-107 2-103 (108)
11 1z1b_A Integrase; protein-DNA 99.4 8.7E-12 3.9E-16 93.4 11.7 101 1-105 74-175 (356)
12 3lys_A Prophage PI2 protein 01 99.3 8E-12 3.6E-16 93.6 10.4 102 1-106 6-108 (112)
13 2kj8_A Putative prophage CPS-5 99.2 1.8E-10 7.9E-15 85.1 10.8 95 1-99 5-100 (118)
14 2a3v_A Site-specific recombina 99.1 2.9E-10 1.3E-14 83.7 7.5 95 4-103 6-101 (320)
15 2kj5_A Phage integrase; GFT NM 99.1 7.2E-10 3.2E-14 81.2 8.9 103 1-107 7-109 (116)
16 2kj9_A Integrase; DNA_BRE_C su 98.9 3.5E-09 1.6E-13 76.9 8.4 96 2-101 12-107 (118)
17 2kkv_A Integrase; protein stru 98.9 9E-09 4E-13 74.3 8.4 95 1-99 7-101 (121)
18 2khv_A Phage integrase; soluti 98.8 4.4E-08 2E-12 69.9 9.9 92 1-96 1-94 (106)
19 1a0p_A Site-specific recombina 94.7 0.038 1.7E-06 32.3 4.8 35 6-40 52-87 (290)
20 2a3v_A Site-specific recombina 93.3 0.042 1.9E-06 32.1 2.9 35 5-39 48-84 (320)
21 1xo0_A Recombinase CRE; CRE re 93.0 0.13 5.8E-06 29.0 5.0 37 5-41 50-87 (324)
22 2key_A Putative phage integras 92.0 0.26 1.1E-05 27.1 5.4 39 5-43 55-95 (112)
23 2kd1_A DNA integration/recombi 91.0 0.48 2.1E-05 25.4 6.0 42 1-43 51-93 (118)
24 2k29_A Antitoxin RELB; ribbon- 60.5 7.9 0.00035 17.7 4.1 41 48-94 11-51 (53)
25 1zbm_A Hypothetical protein AF 59.6 8.1 0.00036 17.6 7.6 77 18-98 192-278 (280)
26 1p5s_A RAS GTPase-activating-l 40.8 16 0.00072 15.7 5.3 54 26-90 113-166 (203)
27 1ou8_A Stringent starvation pr 36.9 14 0.0006 16.2 2.0 30 76-105 12-45 (111)
28 1ou9_A Stringent starvation pr 35.3 15 0.00066 15.9 2.0 28 76-103 12-43 (129)
29 1yfn_A Stringent starvation pr 33.7 16 0.00073 15.7 2.0 30 76-105 13-46 (118)
30 2jpc_A SSRB; DNA binding prote 30.3 24 0.0011 14.7 2.8 13 18-30 25-37 (61)
31 2czl_A Hypothetical protein TT 29.8 24 0.0011 14.6 8.6 77 16-94 183-267 (272)
32 1p2x_A RNG2 protein, RAS GTPas 28.6 25 0.0011 14.5 4.8 58 22-90 65-122 (159)
33 2vgq_A Maltose-binding peripla 28.2 26 0.0011 14.4 6.4 81 1-91 370-454 (477)
34 1x3u_A Transcriptional regulat 27.3 27 0.0012 14.4 3.1 28 64-91 42-78 (79)
35 3bhw_A Uncharacterized protein 25.9 28 0.0013 14.2 8.2 56 46-104 118-178 (209)
36 2fj6_A Hypothetical UPF0346 pr 25.0 13 0.00057 16.4 0.2 10 49-58 39-48 (82)
37 1wyp_A Calponin 1; CH domain, 24.8 30 0.0013 14.1 4.4 55 24-89 70-124 (136)
38 1c9b_A General transcription f 24.7 30 0.0013 14.1 5.9 90 2-99 101-205 (207)
39 1h0b_A Cellulase; endoglucanas 24.0 31 0.0014 14.0 2.4 18 77-94 180-197 (256)
40 1p4w_A RCSB; solution structur 23.8 31 0.0014 13.9 3.2 31 63-93 59-98 (99)
41 1ujo_A Transgelin; CH domain, 23.7 31 0.0014 13.9 5.6 65 21-96 69-135 (144)
42 2kvv_A Putative excisionase; D 23.7 9.2 0.00041 17.3 -0.7 15 15-29 19-33 (78)
43 1wyn_A Calponin-2; CH domain, 23.2 32 0.0014 13.9 5.7 65 23-99 69-133 (146)
44 2hra_A Glutamyl-tRNA synthetas 21.5 34 0.0015 13.7 6.0 81 4-87 90-174 (209)
45 2qjy_B Cytochrome C1; cytochro 20.7 28 0.0012 14.2 1.2 23 18-40 199-221 (269)
46 1fse_A GERE; helix-turn-helix 20.7 36 0.0016 13.5 5.0 28 64-91 37-73 (74)
47 2rnj_A Response regulator prot 20.6 36 0.0016 13.5 4.5 29 63-91 54-91 (91)
No 1
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=99.54 E-value=4e-14 Score=108.16 Aligned_cols=100 Identities=8% Similarity=0.016 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889999999998-73037889999999977799999775201001268899999998875677779999999999999
Q T0619 1 LSPREARDRYLAHR-QTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKN 79 (111)
Q Consensus 1 i~p~e~ie~yL~~~-~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~ 79 (111)
||..|++++|++.+ ..+++++|++.|...++.+..+++.. .+.+|++.++..|+..+.++| +++|+++..+.|++
T Consensus 1 mTl~~~~~~yl~~~~~~~~~~~T~~~y~~~l~~~~~~~g~~---~i~~it~~~i~~~~~~~~~~~-~~~t~~~~~~~l~~ 76 (103)
T 2oxo_A 1 MTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDA---PLEDITTKEIAAMLNGYIDEG-KAASAKLIRSTLSD 76 (103)
T ss_dssp CBHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSCSC---BGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_conf 95999999999999885899999999999999999998689---875326499999999999848-85789999999889
Q ss_pred HHHHHHHCCCCCCCCHHCCCCCCCC
Q ss_conf 9999986588555703216788998
Q T0619 80 WLEYLARIDVVDEDLPEKVHVPTIL 104 (111)
Q Consensus 80 f~~~l~~~~~i~~np~~~i~~Pk~~ 104 (111)
+|+|++++|+|+.||+++|+.|...
T Consensus 77 ~f~~Av~~g~i~~NP~~~vk~pk~k 101 (103)
T 2oxo_A 77 AFREAIAEGHITTNHVAATRAAKSE 101 (103)
T ss_dssp HHHHHHHTTSCSSCTTC--------
T ss_pred HHHHHHHCCCCCCCCHHHCCCCCCC
T ss_conf 9999998859276964327667778
No 2
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343}
Probab=99.52 E-value=1.4e-14 Score=111.05 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 8889999999998730378899999999777999997752010012688999999988756-777799999999999999
Q T0619 2 SPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRG-SDVSPATLNGEMQTLKNW 80 (111)
Q Consensus 2 ~p~e~ie~yL~~~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~-~~~s~~Ti~~~l~~lr~f 80 (111)
++.|.++.|++..+++++++|++.|+..++.|..|++.. .+.+|+..++++|+.++.. +|++++|++++++.||+|
T Consensus 9 tf~~~~~~~l~~~~~~~~~~T~~~Y~~~l~~l~~f~~~~---~i~~it~~~i~~f~~~l~~~~~~s~~Ti~~~l~~lr~~ 85 (112)
T 2key_A 9 SFHDFVASYMKTYSRRLEIGTFRHHKSCMRKFKEYCEGL---QFHELTEDFLRDYLIYMKKTLCNADSTAQRNLSTIKIY 85 (112)
T ss_dssp SHHHHHHHHTHHHHTTSCHHHHHHHHHHHHHTTTSCSCC---CTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC---CHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999999983699989999999999998761259---97984988899999999887741806889999999999
Q ss_pred HHHHHHCCCCCCCCHHCCCCCCC
Q ss_conf 99998658855570321678899
Q T0619 81 LEYLARIDVVDEDLPEKVHVPTI 103 (111)
Q Consensus 81 ~~~l~~~~~i~~np~~~i~~Pk~ 103 (111)
|+||+++|+|..||++.+++-..
T Consensus 86 ~~~a~~~g~I~~nPf~~~~i~~~ 108 (112)
T 2key_A 86 VSAAIKKGYMENDPFKDFGLEHH 108 (112)
T ss_dssp HHHHHHTTSCCSCHHHHHTCCCC
T ss_pred HHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 99999888942187201053324
No 3
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=99.52 E-value=1.5e-13 Score=104.53 Aligned_cols=105 Identities=14% Similarity=0.217 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889999999998730378899999999777999997752010012688999999988756777799999999999999
Q T0619 1 LSPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNW 80 (111)
Q Consensus 1 i~p~e~ie~yL~~~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f 80 (111)
+|..++++.|++....+++++|++.|+..++.++.. ..|...+.+|+..++.+|+..+.++|++++|+++.++.|+++
T Consensus 6 ~T~~~~~~~wl~~~~~~~~~~T~~~~~~~~~~~i~~--~~g~~~i~~It~~~i~~~~~~~~~~~~s~~t~~~~~~~l~~~ 83 (118)
T 2kd1_A 6 LSYGEYLESWFNTKRHSVGIQTAKVLKGYLNSRIIP--SLGNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKVIRNS 83 (118)
T ss_dssp SBHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTTHHH--HTTSSBGGGCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--HHCCEEHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 689999999999984738999999999999987628--857807999899999999999886314899999999999999
Q ss_pred HHHHHHCCCCCCCCHHCCCCCCCCCCC
Q ss_conf 999986588555703216788998747
Q T0619 81 LEYLARIDVVDEDLPEKVHVPTILEHH 107 (111)
Q Consensus 81 ~~~l~~~~~i~~np~~~i~~Pk~~~~~ 107 (111)
|+||++.|++..||+..|++|......
T Consensus 84 ~~~av~~~~i~~NP~~~v~~pk~~kke 110 (118)
T 2kd1_A 84 LEHAIDLELITKNVAAKTKLPKADKEE 110 (118)
T ss_dssp HHHHHHTTSCSSCTTTTCCCCSCCCCS
T ss_pred HHHHHHCCCCCCCCHHHCCCCCCCCCC
T ss_conf 999998889563918419289999975
No 4
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=99.51 E-value=1.6e-13 Score=104.32 Aligned_cols=103 Identities=8% Similarity=0.084 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9888999999999-873037889999999977799999775201001268899999998875677779999999999999
Q T0619 1 LSPREARDRYLAH-RQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKN 79 (111)
Q Consensus 1 i~p~e~ie~yL~~-~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~ 79 (111)
||+.|.++.|++. +..+++++|++.|+..++.+..+++. ..+.+|++.++.+|+..+. ++++++|+++.++.|++
T Consensus 2 iTf~e~~~~w~~~~~~~~~~~~T~~~y~~~~~~i~~~~g~---~~i~~It~~~i~~~~~~l~-k~~s~~T~~~~~~~l~~ 77 (110)
T 2khq_A 2 ITFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRH---KLLKDIKRTEYQKFLNEYG-LTHSYETIRKLNSYIRN 77 (110)
T ss_dssp CBHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHCSS---CBGGGCCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCC---CHHHHCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH
T ss_conf 8389999999998642778999999999988601777381---0685436999999999863-01588999999999999
Q ss_pred HHHHHHHCCCCCCCCHHCCCCCCCCCCC
Q ss_conf 9999986588555703216788998747
Q T0619 80 WLEYLARIDVVDEDLPEKVHVPTILEHH 107 (111)
Q Consensus 80 f~~~l~~~~~i~~np~~~i~~Pk~~~~~ 107 (111)
+|+||+++|+|+.||+++|+++......
T Consensus 78 ~~~~Av~~~~I~~NP~~~vki~a~v~~~ 105 (110)
T 2khq_A 78 AFDDAIHEGYVIKNPTYKAELHASVLEH 105 (110)
T ss_dssp HHHHHHHTTCCCCCGGGGCCCCCGGGCC
T ss_pred HHHHHHHCCCCCCCCCCCCEECCCHHHH
T ss_conf 9999998879101987778746431121
No 5
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=99.49 E-value=9.5e-14 Score=105.77 Aligned_cols=99 Identities=16% Similarity=0.307 Sum_probs=90.2
Q ss_pred HHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987--3037889999999977799999775201001268899999998875677779999999999999999
Q T0619 5 EARDRYLAHRQ--TDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLE 82 (111)
Q Consensus 5 e~ie~yL~~~~--~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~ 82 (111)
-.||.||+++. +++|++|+++|+.+|+.|++||+..++. +.+|+..++..|+.++...+++++|++.++++|++|++
T Consensus 4 ~~i~~fl~~l~~er~ls~~Ti~~Y~~~l~~f~~~~~~~~~~-~~~i~~~~i~~f~~~~~~~~~~~~t~~~~l~~l~~~~~ 82 (290)
T 1a0p_A 4 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQ 82 (290)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCC-TTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC-HHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999986908999999999999999999885999-37699999999999998779988999999999987421
Q ss_pred HHHHCCCCCCCCHHCCCCCCCC
Q ss_conf 9986588555703216788998
Q T0619 83 YLARIDVVDEDLPEKVHVPTIL 104 (111)
Q Consensus 83 ~l~~~~~i~~np~~~i~~Pk~~ 104 (111)
|+.+++.+..+|...+..|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~k~~ 104 (290)
T 1a0p_A 83 YLYREKFREDDPSAHLASPKLP 104 (290)
T ss_dssp HHHHTTSSSSCTTSCC------
T ss_pred HHHHCCCCCCCCHHHCCCCCCC
T ss_conf 1222042246703311477765
No 6
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=99.47 E-value=3.7e-13 Score=102.05 Aligned_cols=102 Identities=10% Similarity=0.154 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88899999999987303788999999997779999977520100126889999999887567777999999999999999
Q T0619 2 SPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWL 81 (111)
Q Consensus 2 ~p~e~ie~yL~~~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~ 81 (111)
|+.|+++.||+....+++++|...|...++.++.+++.. .+.+|++.++.+|+..+... .+++|+++.++.|+++|
T Consensus 1 Tf~e~~~~wl~~~~~~~~~~T~~~~~~~~k~~~~~~g~~---~l~~It~~~i~~~~~~l~~~-~s~~t~~~~~~~l~~~f 76 (111)
T 2kiw_A 1 TFKQVADDWLKQYANDVKVSSVRAREKAIQHAIERFNTK---PIQTIKKHDYQRFVDDISAQ-YSKNYVDSIVASTNMIF 76 (111)
T ss_dssp CHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTSS---CGGGCCHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH
T ss_conf 999999999999761189999999999999999998789---29993599999999988644-03999998999999999
Q ss_pred HHHHHCCCCCCCCHHCCCCCCCCCCC
Q ss_conf 99986588555703216788998747
Q T0619 82 EYLARIDVVDEDLPEKVHVPTILEHH 107 (111)
Q Consensus 82 ~~l~~~~~i~~np~~~i~~Pk~~~~~ 107 (111)
+||++.|+|+.||++.|+.|......
T Consensus 77 ~~Av~~~~i~~NP~~~vk~pk~~~~~ 102 (111)
T 2kiw_A 77 KYAYDTRLIKAMPSEGIKRPKKKVSV 102 (111)
T ss_dssp HHHHHTTSCSCCTTTTCCCCSCCCCC
T ss_pred HHHHHCCCCCCCCHHHCCCCCCCCCH
T ss_conf 99999789231818538578888778
No 7
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 2crx_A* 1ouq_A* 1nzb_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A 1pvq_A ...
Probab=99.46 E-value=3.4e-13 Score=102.23 Aligned_cols=92 Identities=9% Similarity=0.093 Sum_probs=80.1
Q ss_pred HHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987--3037889999999977799999775201001268899999998875677779999999999999999
Q T0619 5 EARDRYLAHRQ--TDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLE 82 (111)
Q Consensus 5 e~ie~yL~~~~--~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~ 82 (111)
|..+.+++..+ +++|++|+++|+..++.|..||.+.|+. +.++++.+|.+|+.++.++|++++||++++++|++||+
T Consensus 3 ~~~~~~~~~~~~~~~~s~~T~~~y~~~l~~f~~f~~~~~~~-~~~vt~~~v~~y~~~l~~~g~s~sTi~~~~~~l~~~~~ 81 (324)
T 1xo0_A 3 EVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRK-WFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHR 81 (324)
T ss_dssp HHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHTCC-CSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 89999999999754879999999999999999999974999-67899999999999998779998999999999988899
Q ss_pred HHHHCCCCCCCCHHC
Q ss_conf 998658855570321
Q T0619 83 YLARIDVVDEDLPEK 97 (111)
Q Consensus 83 ~l~~~~~i~~np~~~ 97 (111)
|+...+.+..+|...
T Consensus 82 ~~~~~~~~~~~~~~~ 96 (324)
T 1xo0_A 82 RSGLPRPSDSNAVSL 96 (324)
T ss_dssp HHTSCCGGGSHHHHH
T ss_pred HHHHCCCCCCCCHHH
T ss_conf 987315433532444
No 8
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=99.45 E-value=1.3e-13 Score=104.89 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988899999999987-3037889999999977799999775201001268899999998875677779999999999999
Q T0619 1 LSPREARDRYLAHRQ-TDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKN 79 (111)
Q Consensus 1 i~p~e~ie~yL~~~~-~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~ 79 (111)
+|..|.++.|++... .+++++|++.|+..++.++... -|-..+.+||..++..|+..+.++|++++|+++.++.|++
T Consensus 7 ~T~~~~~~~w~~~~~~~~~~~~T~~~y~~~~~~~i~~~--~g~~~l~~It~~~i~~~~~~l~~~g~s~~ti~~~~~~l~~ 84 (117)
T 2kkp_A 7 ITVEQWLNRWLTDYAKPHLRQSTWESYETVLRLHVIPT--LGSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHE 84 (117)
T ss_dssp SCHHHHHHHHHHHHTSCCCSCCCCSHHHHHHHHHHCCC--CCTSCTTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--HCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 88999999999999877778848999999999877898--6765899967688898999999748652789999999999
Q ss_pred HHHHHHHCCCCCCCCHHCCCCCCCCCCC
Q ss_conf 9999986588555703216788998747
Q T0619 80 WLEYLARIDVVDEDLPEKVHVPTILEHH 107 (111)
Q Consensus 80 f~~~l~~~~~i~~np~~~i~~Pk~~~~~ 107 (111)
+|+||+++|+|+.||++.|++|......
T Consensus 85 ~~~~A~~~~~i~~NP~~~vk~Pk~p~~~ 112 (117)
T 2kkp_A 85 AMSQARESGLLLQNPTEAAKPPRHPLEH 112 (117)
T ss_dssp HHHHHHTTTSCSSCGGGGSCCCCCCCCC
T ss_pred HHHHHHHCCCCCCCHHHHCCCCCCCCCC
T ss_conf 9999998889341937319799998544
No 9
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=99.45 E-value=1.1e-12 Score=99.14 Aligned_cols=101 Identities=8% Similarity=0.010 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988899999999987-3037889999999977799999775201001268899999998875677779999999999999
Q T0619 1 LSPREARDRYLAHRQ-TDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKN 79 (111)
Q Consensus 1 i~p~e~ie~yL~~~~-~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~ 79 (111)
||..|.+++|++... ++++++|++.|+..++.|..|+++. .+.+|+..++.+|+.++.+.| +++|+++++++|++
T Consensus 1 ~Tl~~~l~~y~~~~~~~~~~~~T~~~y~~~l~~~~~~~g~~---~l~~i~~~~i~~~~~~l~~~~-~~~t~~~~~~~l~~ 76 (283)
T 1z19_A 1 MTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDA---PLEDITTKEIAAMLNGYIDEG-KAASAKLIRSTLSD 76 (283)
T ss_dssp CBHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHSCSC---BGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC---CHHHCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_conf 96999999999999875999999999999999999997699---968799999999999998720-58999999998888
Q ss_pred HHHHHHHCCCCCCCCHHCCCCCCCCC
Q ss_conf 99999865885557032167889987
Q T0619 80 WLEYLARIDVVDEDLPEKVHVPTILE 105 (111)
Q Consensus 80 f~~~l~~~~~i~~np~~~i~~Pk~~~ 105 (111)
+|+||+++|+++.||+..++.+....
T Consensus 77 ~~~~a~~~~~i~~np~~~i~~~~~~~ 102 (283)
T 1z19_A 77 AFREAIAEGHITTNHVAATRAAKSKV 102 (283)
T ss_dssp HHHHHHHTTSCSCCTTTTSCCCCCCC
T ss_pred HHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 74244124454221011011222222
No 10
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=99.42 E-value=1.6e-12 Score=98.06 Aligned_cols=101 Identities=12% Similarity=0.176 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988899999999987-3037889999999977799999775201001268899999998875677779999999999999
Q T0619 1 LSPREARDRYLAHRQ-TDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKN 79 (111)
Q Consensus 1 i~p~e~ie~yL~~~~-~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~ 79 (111)
+|+.|..+.||+... .+++++|+..|...++.++.+++.. .+.+|+..+|++|+. +.+++++|+++.++.|++
T Consensus 2 ~Tf~~~~~~wl~~~~~~~~~~~T~~~y~~~~~~~i~~lg~~---~l~~It~~~i~~~l~---~~~~s~~tv~~~~~~l~~ 75 (108)
T 2kob_A 2 DSFGDWAEKFLKSKEADGVSVSQLNSYKNYCRNHLSPLYMK---SLSEILPADIQSIIN---ETKLAKNTLKAIRNTASQ 75 (108)
T ss_dssp CBHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSHHHHTS---BGGGCCHHHHHHHHH---HCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_conf 43999999999975407889999999999999999998667---199930999999998---763029999999999999
Q ss_pred HHHHHHHCCCCCCCCHHCCCCCCCCCCC
Q ss_conf 9999986588555703216788998747
Q T0619 80 WLEYLARIDVVDEDLPEKVHVPTILEHH 107 (111)
Q Consensus 80 f~~~l~~~~~i~~np~~~i~~Pk~~~~~ 107 (111)
+|+|++++|+|+.||+..|++|......
T Consensus 76 if~~Av~~~~I~~NP~~~ik~PK~~pe~ 103 (108)
T 2kob_A 76 IFRLAIENRAIDFNPADYVRIPKIALEH 103 (108)
T ss_dssp HHHHHHHTTSSSSCGGGTCCCCCCCCSS
T ss_pred HHHHHHHCCCCCCCHHHCCCCCCCCCCC
T ss_conf 9999997879131927428689999534
No 11
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=99.36 E-value=8.7e-12 Score=93.35 Aligned_cols=101 Identities=8% Similarity=0.007 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988899999999987-3037889999999977799999775201001268899999998875677779999999999999
Q T0619 1 LSPREARDRYLAHRQ-TDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKN 79 (111)
Q Consensus 1 i~p~e~ie~yL~~~~-~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~ 79 (111)
++..++++.|+.... .+++++|++.|+..++.|..+++.. .+.+|+..++..|+.++.+.| +++|+++++++|++
T Consensus 74 ~t~~~~~~~y~~~~~~~~~~~~T~~~~~~~~~~~~~~~g~~---~l~~i~~~~i~~~~~~~~~~~-~~~t~~~~~~~l~~ 149 (356)
T 1z1b_A 74 VTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDA---PLEDITTKEIAAMLNGYIDEG-KAASAKLIRSTLSD 149 (356)
T ss_dssp CBHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCSC---BGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC---CHHHCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_conf 62999999999998645788879999999999999997689---878812999999999998513-79999999999766
Q ss_pred HHHHHHHCCCCCCCCHHCCCCCCCCC
Q ss_conf 99999865885557032167889987
Q T0619 80 WLEYLARIDVVDEDLPEKVHVPTILE 105 (111)
Q Consensus 80 f~~~l~~~~~i~~np~~~i~~Pk~~~ 105 (111)
+|+||.++|+++.||+..++.|....
T Consensus 150 ~~~~a~~~~~~~~np~~~i~~~~~~~ 175 (356)
T 1z1b_A 150 AFREAIAEGHITTNHVAATRAAKSKV 175 (356)
T ss_dssp HHHHHHHTTSCSSCTTTTSCCCCCCC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 56421100123332222222223344
No 12
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=99.34 E-value=8e-12 Score=93.58 Aligned_cols=102 Identities=12% Similarity=0.143 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9888999999999-873037889999999977799999775201001268899999998875677779999999999999
Q T0619 1 LSPREARDRYLAH-RQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKN 79 (111)
Q Consensus 1 i~p~e~ie~yL~~-~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~ 79 (111)
.+..|.++.|++. +...++++|...|+..++.+..+++.. .+.+|++.++++|+..+. ++++++|+++..+.|++
T Consensus 6 ~t~~d~~e~Wl~~yk~~~~~~~T~~~y~~~~~~i~~~~g~~---~l~~It~~~i~~~~~~l~-k~~s~~tv~~~~~~l~~ 81 (112)
T 3lys_A 6 QEISEYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNV---LISEITASSYQRALNKFA-ETHAKASTKGFHTRVRA 81 (112)
T ss_dssp SBHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHSSSC---BTTTCCHHHHHHHHHHHH-TTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC---CHHHCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
T ss_conf 76999999999997317689999999999999999985868---565589999999999986-22228999999999999
Q ss_pred HHHHHHHCCCCCCCCHHCCCCCCCCCC
Q ss_conf 999998658855570321678899874
Q T0619 80 WLEYLARIDVVDEDLPEKVHVPTILEH 106 (111)
Q Consensus 80 f~~~l~~~~~i~~np~~~i~~Pk~~~~ 106 (111)
.|+||+++|+|..||+.+|++++....
T Consensus 82 ~~~~Av~~~~I~~NP~~~Vki~g~e~~ 108 (112)
T 3lys_A 82 SIQCLIEEGRLQKDFTTRAVVKGLEHH 108 (112)
T ss_dssp HHHHHHHTTSCSSCTTSSTTCCCCCC-
T ss_pred HHHHHHHCCCCCCCCCCCCEECCEECC
T ss_conf 999999885911088888975640135
No 13
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=99.19 E-value=1.8e-10 Score=85.09 Aligned_cols=95 Identities=6% Similarity=-0.043 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9888999999999873037889999999977799-999775201001268899999998875677779999999999999
Q T0619 1 LSPREARDRYLAHRQTDAADASIKSFRYRLKHFV-EWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKN 79 (111)
Q Consensus 1 i~p~e~ie~yL~~~~~~~s~~Ti~~Y~~~l~~f~-~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~ 79 (111)
.|+++..+.|++.+..+++++|...|...++.++ -+++ -..+.+|++.++..++..+..+| ++.|+++.++.|++
T Consensus 5 ~TF~~v~~~Wle~~~~~~~~~t~~~~~~~l~~~i~p~~G---~~~i~~It~~~i~~~l~~l~~~~-~~~ta~r~~~~l~~ 80 (118)
T 2kj8_A 5 NSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIG---GLEIQDIEPMQLLEVIRRFEDRG-AMERANKARRRCGE 80 (118)
T ss_dssp TBHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHT---TSBTTSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC---CCCHHHHCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf 559999999999860418999999999999999788858---78099918999999999999839-94488999999999
Q ss_pred HHHHHHHCCCCCCCCHHCCC
Q ss_conf 99999865885557032167
Q T0619 80 WLEYLARIDVVDEDLPEKVH 99 (111)
Q Consensus 80 f~~~l~~~~~i~~np~~~i~ 99 (111)
.|+|+++.|+|+.||+.+|+
T Consensus 81 if~~Av~~g~i~~NP~~~ik 100 (118)
T 2kj8_A 81 VFRYAIVTGRAKYNPAPDLA 100 (118)
T ss_dssp HHHHHHHTTSCSCCSHHHHH
T ss_pred HHHHHHHCCCHHCCCHHHHH
T ss_conf 99999986883008777898
No 14
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=99.07 E-value=2.9e-10 Score=83.69 Aligned_cols=95 Identities=8% Similarity=0.127 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999987303788999999997779999977520100126889999999887567-7779999999999999999
Q T0619 4 REARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGS-DVSPATLNGEMQTLKNWLE 82 (111)
Q Consensus 4 ~e~ie~yL~~~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~-~~s~~Ti~~~l~~lr~f~~ 82 (111)
-+.++.||. .+++|++|+++|...|+.|+.|+++.+ +.+|+..++.+|+.++..+ +.+++|++++++++++||+
T Consensus 6 l~~~~~yl~--~r~~s~~T~~~Y~~~l~~f~~~~~~~~---~~~i~~~~i~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~ 80 (320)
T 2a3v_A 6 LLSVREFMQ--TRYYAKKTIEAYLHWITRYIHFHNKKH---PSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYK 80 (320)
T ss_dssp HHHHHHHHH--HTTCCHHHHHHHHHHHHHHHTTSSSCC---GGGCCHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHCCCC---HHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999--849899999999999999999971079---444999999999999998389883269999999988875
Q ss_pred HHHHCCCCCCCCHHCCCCCCC
Q ss_conf 998658855570321678899
Q T0619 83 YLARIDVVDEDLPEKVHVPTI 103 (111)
Q Consensus 83 ~l~~~~~i~~np~~~i~~Pk~ 103 (111)
|+...+....++....+.|..
T Consensus 81 ~~~~~~~~~~~~~~~~k~~~~ 101 (320)
T 2a3v_A 81 EILKTPLSLEIRFQRSQLERK 101 (320)
T ss_dssp HTSSCCCCTTCCCCCCCCCCC
T ss_pred HHHCCCCCCCCCCHHHHHHCC
T ss_conf 100012454322001000001
No 15
>2kj5_A Phage integrase; GFT NMR, PSI-2, NESG, structural genomics, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=99.05 E-value=7.2e-10 Score=81.23 Aligned_cols=103 Identities=10% Similarity=0.104 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889999999998730378899999999777999997752010012688999999988756777799999999999999
Q T0619 1 LSPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNW 80 (111)
Q Consensus 1 i~p~e~ie~yL~~~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f 80 (111)
+|..|+++.|++....... .|...++..+..++ +..-|-..+.+|+..++.+|++.+... .++.|+++.++.|+++
T Consensus 7 ~T~~~l~~~w~e~~~~~~~-k~~~~~~~~~~~~i--~p~lG~~~i~~It~~di~~~~~~~~~~-~~~~ta~~~~~~l~~i 82 (116)
T 2kj5_A 7 YTVAQLADEYFERMIAGRW-KHPNIVRSRIEKDI--KPAIGSLKVEDVKPRHIDDVLKAVMKR-GAPSIANDTLRWLKRM 82 (116)
T ss_dssp CBHHHHHHHHHHHHTTTSC-SCHHHHHHHHHHTT--SCSGGGSBSSSCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH--HHHHCCCCHHHHCHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
T ss_conf 5299999999998746788-71999999999897--998879867870647789998887640-2316888999999999
Q ss_pred HHHHHHCCCCCCCCHHCCCCCCCCCCC
Q ss_conf 999986588555703216788998747
Q T0619 81 LEYLARIDVVDEDLPEKVHVPTILEHH 107 (111)
Q Consensus 81 ~~~l~~~~~i~~np~~~i~~Pk~~~~~ 107 (111)
|+||++.|+|..||+..|++|......
T Consensus 83 f~~Av~~~~i~~NP~~~i~~~~~g~k~ 109 (116)
T 2kj5_A 83 FNYAIKRHIIEYNPAAAFDPGDAGGKL 109 (116)
T ss_dssp HHHHHHTTSCSSCGGGGSCCCCCCCCC
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999998789567973469723589731
No 16
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=98.93 E-value=3.5e-09 Score=76.89 Aligned_cols=96 Identities=10% Similarity=0.010 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88899999999987303788999999997779999977520100126889999999887567777999999999999999
Q T0619 2 SPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWL 81 (111)
Q Consensus 2 ~p~e~ie~yL~~~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~ 81 (111)
|+++..+.|++. ..+++++|.+.+.+.+..++ +..-|-..+.+|+..++..++..+...| ++.|.++.++.+++.|
T Consensus 12 TF~~va~~W~~~-k~~~~~~t~~~~~~~l~~~i--~P~~G~~~i~~It~~~i~~~l~~i~~~g-~~~ta~r~~~~l~~If 87 (118)
T 2kj9_A 12 AFKTVAKSWFAT-KTTWSEDYQRSVWTRLETYL--FPDIGNKDIAELDTGDLLVPIKKIEKLG-YLEIAMRVKQYATAIM 87 (118)
T ss_dssp BHHHHHHHHHHT-CCSSCHHHHHHHHHHHHHTS--STTGGGSBGGGCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHH
T ss_conf 799999999998-78888879999999999887--8986788599955899999999999907-9288999999999999
Q ss_pred HHHHHCCCCCCCCHHCCCCC
Q ss_conf 99986588555703216788
Q T0619 82 EYLARIDVVDEDLPEKVHVP 101 (111)
Q Consensus 82 ~~l~~~~~i~~np~~~i~~P 101 (111)
+|++..|+|+.||+.+|+..
T Consensus 88 ~~Av~~g~i~~NPa~~ik~~ 107 (118)
T 2kj9_A 88 RYAVQQKMIRFNPAYDLEGA 107 (118)
T ss_dssp HHHHHTTSSSSCHHHHCCSC
T ss_pred HHHHHCCCCCCCCHHHHHHH
T ss_conf 99998788121848889876
No 17
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=98.86 E-value=9e-09 Score=74.29 Aligned_cols=95 Identities=9% Similarity=0.047 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889999999998730378899999999777999997752010012688999999988756777799999999999999
Q T0619 1 LSPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNW 80 (111)
Q Consensus 1 i~p~e~ie~yL~~~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f 80 (111)
+|+++..+.|++.. +.+++.|...|.+.++..+ +..-|-..+.+|+..++..++..+..+| ++.|..+.++.+++.
T Consensus 7 ~TF~~va~eWle~k-~~~~~~t~~~~~~~~~~~i--~P~~G~~~i~~It~~di~~~l~~i~~~g-~~~ta~r~~~~l~~i 82 (121)
T 2kkv_A 7 YTFETIAREWHESN-KRWSEDHRSRVLRYLELYI--FPHIGSSDIRQLKTSHLLAPIKEVDTSG-KHDVAQRLQQRVTAI 82 (121)
T ss_dssp CSHHHHHHHHHTTC-CSSCHHHHHHHHHHHHHHH--SSSSTTSCTTCCCSGGGHHHHHHHHHTT-THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHH--HHHHCCEEHHHHCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_conf 48999999999987-9888869999999999876--2250777599937288999999999928-968999999999999
Q ss_pred HHHHHHCCCCCCCCHHCCC
Q ss_conf 9999865885557032167
Q T0619 81 LEYLARIDVVDEDLPEKVH 99 (111)
Q Consensus 81 ~~~l~~~~~i~~np~~~i~ 99 (111)
|+|+++.|+|..||+..|+
T Consensus 83 ~~~Av~~g~i~~NP~~~i~ 101 (121)
T 2kkv_A 83 MRYAVQNDYIDSNPASDMA 101 (121)
T ss_dssp HHHHHHTTSSCSCSCSSSS
T ss_pred HHHHHHCCCCCCCCHHHHH
T ss_conf 9999987790128687898
No 18
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=98.78 E-value=4.4e-08 Score=69.93 Aligned_cols=92 Identities=7% Similarity=0.067 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988899999999987303-7889999999977799999775201001268899999998875677779999999999999
Q T0619 1 LSPREARDRYLAHRQTDA-ADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKN 79 (111)
Q Consensus 1 i~p~e~ie~yL~~~~~~~-s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~ 79 (111)
||+.|+.++|++.+..++ ++.|...+++.|+..+ +..-|-..+++|++.++.+++.-+. ++ ++.|.++.++.+++
T Consensus 1 iTF~evae~w~e~~~~~wk~~~~~~~~~~~l~~~i--~P~lG~~pI~eI~~~~i~~~~~~~~-~~-~~~ta~r~~~~l~~ 76 (106)
T 2khv_A 1 MTFSECAALYIKAHRSSWKNTKHADQWTNTIKTYC--GPVIGPLSVQDVDTKLIMKVLDPIW-EQ-KPETASRLRGRIES 76 (106)
T ss_dssp CBHHHHHHHHHHTTGGGGTTSTHHHHHHHHHHHHT--HHHHTTSBSSSCCHHHHHHHHHHHH-HH-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHH
T ss_conf 97999999999984204798669999999999873--5234996499976799999999999-63-28999999999999
Q ss_pred HHHHHHHCCCCCC-CCHH
Q ss_conf 9999986588555-7032
Q T0619 80 WLEYLARIDVVDE-DLPE 96 (111)
Q Consensus 80 f~~~l~~~~~i~~-np~~ 96 (111)
.|+|++..|++.. ||++
T Consensus 77 vf~~Ai~~g~i~~~NPA~ 94 (106)
T 2khv_A 77 VLDWATVRGYREGDNPAR 94 (106)
T ss_dssp HHHHHHHHTSSCSCCTTS
T ss_pred HHHHHHHCCCCCCCCHHH
T ss_conf 999999929767898188
No 19
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=94.67 E-value=0.038 Score=32.35 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=17.6
Q ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999987-3037889999999977799999775
Q T0619 6 ARDRYLAHRQ-TDAADASIKSFRYRLKHFVEWAEER 40 (111)
Q Consensus 6 ~ie~yL~~~~-~~~s~~Ti~~Y~~~l~~f~~f~~~~ 40 (111)
.|+.|+..+. .+.+++|+..+...|+.|++|+.+.
T Consensus 52 ~i~~f~~~~~~~~~~~~t~~~~l~~l~~~~~~~~~~ 87 (290)
T 1a0p_A 52 DLQALLAERLEGGYKATSSARLLSAVRRLFQYLYRE 87 (290)
T ss_dssp HHHHHHHSCC-------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999877998899999999998742112220
No 20
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=93.29 E-value=0.042 Score=32.08 Aligned_cols=35 Identities=9% Similarity=0.001 Sum_probs=26.5
Q ss_pred HHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987--303788999999997779999977
Q T0619 5 EARDRYLAHRQ--TDAADASIKSFRYRLKHFVEWAEE 39 (111)
Q Consensus 5 e~ie~yL~~~~--~~~s~~Ti~~Y~~~l~~f~~f~~~ 39 (111)
+-|+.|+.++. .+.+++|+..+...+..|+.++..
T Consensus 48 ~~i~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 84 (320)
T 2a3v_A 48 KEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEILK 84 (320)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999983898832699999999888751000
No 21
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 2crx_A* 1ouq_A* 1nzb_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A 1pvq_A ...
Probab=93.02 E-value=0.13 Score=28.97 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=31.1
Q ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987-30378899999999777999997752
Q T0619 5 EARDRYLAHRQ-TDAADASIKSFRYRLKHFVEWAEERD 41 (111)
Q Consensus 5 e~ie~yL~~~~-~~~s~~Ti~~Y~~~l~~f~~f~~~~~ 41 (111)
+.|+.|+.++. +++|++|+..|...|+.|+.|+...+
T Consensus 50 ~~v~~y~~~l~~~g~s~sTi~~~~~~l~~~~~~~~~~~ 87 (324)
T 1xo0_A 50 EDVRDYLLYLQARGLAVKTIQQHLGQLNMLHRRSGLPR 87 (324)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999998779998999999999988899987315
No 22
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343}
Probab=91.97 E-value=0.26 Score=27.11 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=32.6
Q ss_pred HHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999987--3037889999999977799999775201
Q T0619 5 EARDRYLAHRQ--TDAADASIKSFRYRLKHFVEWAEERDIT 43 (111)
Q Consensus 5 e~ie~yL~~~~--~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~ 43 (111)
..|+.|+.++. +++|++|+..|...|+.|++|+.+.|..
T Consensus 55 ~~i~~f~~~l~~~~~~s~~Ti~~~l~~lr~~~~~a~~~g~I 95 (112)
T 2key_A 55 DFLRDYLIYMKKTLCNADSTAQRNLSTIKIYVSAAIKKGYM 95 (112)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88999999998877418068899999999999999988894
No 23
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=90.98 E-value=0.48 Score=25.38 Aligned_cols=42 Identities=14% Similarity=0.254 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9888999999999-873037889999999977799999775201
Q T0619 1 LSPREARDRYLAH-RQTDAADASIKSFRYRLKHFVEWAEERDIT 43 (111)
Q Consensus 1 i~p~e~ie~yL~~-~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~ 43 (111)
|++.+ ++.|+.. ..+++|++|+..+...|+.+++|+...|..
T Consensus 51 It~~~-i~~~~~~~~~~~~s~~t~~~~~~~l~~~~~~av~~~~i 93 (118)
T 2kd1_A 51 LTSLH-MQNYVNSLRDEGLKRGTIEKIIKVIRNSLEHAIDLELI 93 (118)
T ss_dssp CCHHH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89999-99999998863148999999999999999999988895
No 24
>2k29_A Antitoxin RELB; ribbon-helix-helix, repressor, stress response, transcription, transcription regulation; NMR {Escherichia coli}
Probab=60.48 E-value=7.9 Score=17.71 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 68899999998875677779999999999999999998658855570
Q T0619 48 LTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVVDEDL 94 (111)
Q Consensus 48 it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~~i~~np 94 (111)
|+...-++...-+.+-|+++++ +++.|+++.++++.++-.|
T Consensus 11 iD~~lK~~a~~il~~lGls~s~------Ai~~f~~qiv~~~~lPF~~ 51 (53)
T 2k29_A 11 IDDELKARSYAALEKMGVTPSE------ALRLMLEYIADNERLPFKQ 51 (53)
T ss_dssp ECHHHHHHHHHHHHHTTCCHHH------HHHHHHHHHHHHSSCSCCC
T ss_pred CCHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHCCCCCCC
T ss_conf 0999999999999994999999------9999999999938999884
No 25
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1
Probab=59.58 E-value=8.1 Score=17.61 Aligned_cols=77 Identities=10% Similarity=0.108 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-------CCCCCCCCHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 378899999999777999997752-------010012688999999988-7567--777999999999999999999865
Q T0619 18 AADASIKSFRYRLKHFVEWAEERD-------ITAMRELTGWKLDEYETF-RRGS--DVSPATLNGEMQTLKNWLEYLARI 87 (111)
Q Consensus 18 ~s~~Ti~~Y~~~l~~f~~f~~~~~-------~~~l~~it~~~i~~y~~~-l~~~--~~s~~Ti~~~l~~lr~f~~~l~~~ 87 (111)
+.+.+++.....+..-.+|..++- ...-..++...++.|+.. .+.- .++. ....+|+.||+++.+.
T Consensus 192 ~~~e~~~~~~~al~~s~~~a~~~~~e~~~~~~~~~~~l~~e~~~~~~~~Y~~~~~~~l~~----~~~~gL~~f~~~a~~~ 267 (280)
T 1zbm_A 192 LSVEVQEEFLRAMRESIAFAIENPDEAIEYAMKYSRGLDRERAKRFAMMYVNDYTYNMPE----SVDAALKKLYEMAEAK 267 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSHHHHHHHHGGGCTTCCHHHHHHHHHHHSSHHHHSCCH----HHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEECCCH----HHHHHHHHHHHHHHHC
T ss_conf 699999999999999999998799999999999745999999999999755230747999----9999999999999987
Q ss_pred CCCCCCCHHCC
Q ss_conf 88555703216
Q T0619 88 DVVDEDLPEKV 98 (111)
Q Consensus 88 ~~i~~np~~~i 98 (111)
|+|+.-+.+-+
T Consensus 268 Gli~~P~~~~~ 278 (280)
T 1zbm_A 268 GLIKMPKLDIL 278 (280)
T ss_dssp TCC--------
T ss_pred CCCCCCCCCEE
T ss_conf 99999986421
No 26
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=40.85 E-value=16 Score=15.74 Aligned_cols=54 Identities=11% Similarity=0.200 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99997779999977520100126889999999887567777999999999999999999865885
Q T0619 26 FRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVV 90 (111)
Q Consensus 26 Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~~i 90 (111)
....+..|++||.+.|+....-.+..||.. ++ -+...+.+|.++-+++...|+.
T Consensus 113 ~~eNI~~fL~~~~~~Gv~~~~lF~~~DL~e------~k-----N~~~Vl~cL~aL~r~~~~~g~~ 166 (203)
T 1p5s_A 113 HSDNINKFLDFIHGIGLPEIFHFELTDIYE------GK-----NLPKVIYCIHALSYFLSMQDLA 166 (203)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCCHHHHHS------CS-----CHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHC------CC-----CHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999985998614458799870------87-----8689999999999999976998
No 27
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=36.88 E-value=14 Score=16.21 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHCCCCCCC---CH-HCCCCCCCCC
Q ss_conf 999999999865885557---03-2167889987
Q T0619 76 TLKNWLEYLARIDVVDED---LP-EKVHVPTILE 105 (111)
Q Consensus 76 ~lr~f~~~l~~~~~i~~n---p~-~~i~~Pk~~~ 105 (111)
-||+++.||++.|+.+.= .. +++..|....
T Consensus 12 LirA~y~W~~Dn~~TPyl~Vda~~~~v~VP~~~v 45 (111)
T 1ou8_A 12 LLRAYYDWLVDNSFTPYLVVDATYLGVNVPVEYV 45 (111)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTSTTCBCCGGGC
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHC
T ss_conf 3999999998689986799983899981897883
No 28
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=35.28 E-value=15 Score=15.95 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHCCCCCCCCH----HCCCCCCC
Q ss_conf 99999999986588555703----21678899
Q T0619 76 TLKNWLEYLARIDVVDEDLP----EKVHVPTI 103 (111)
Q Consensus 76 ~lr~f~~~l~~~~~i~~np~----~~i~~Pk~ 103 (111)
-||+++.||++.|+.+.=.. .++..|..
T Consensus 12 lira~y~W~~dn~~tPyi~vda~~~~v~VP~~ 43 (129)
T 1ou9_A 12 LLRAYYDWLVDNSFTPYLVVDATYLGVNVPVE 43 (129)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTSTTCBSCGG
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHH
T ss_conf 19999999987889867999968998488468
No 29
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=33.69 E-value=16 Score=15.69 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHCCCCCC---CCH-HCCCCCCCCC
Q ss_conf 99999999986588555---703-2167889987
Q T0619 76 TLKNWLEYLARIDVVDE---DLP-EKVHVPTILE 105 (111)
Q Consensus 76 ~lr~f~~~l~~~~~i~~---np~-~~i~~Pk~~~ 105 (111)
-||+++.||.+.|..+. |.. +++..|....
T Consensus 13 LirA~y~W~~Dn~~TPyl~Vda~~~~v~VP~~~v 46 (118)
T 1yfn_A 13 LLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYA 46 (118)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTSTTCBSCGGGC
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHC
T ss_conf 8999999998789985799994899976897990
No 30
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.30 E-value=24 Score=14.68 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 3788999999997
Q T0619 18 AADASIKSFRYRL 30 (111)
Q Consensus 18 ~s~~Ti~~Y~~~l 30 (111)
.|++|++.|...+
T Consensus 25 iS~~TV~~~~~~i 37 (61)
T 2jpc_A 25 ISIKTVETHRMNM 37 (61)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 9999999999999
No 31
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermophilic bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus HB8} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=29.79 E-value=24 Score=14.62 Aligned_cols=77 Identities=8% Similarity=0.031 Sum_probs=44.7
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3037889999999977799999775201-------001268899999998-87567777999999999999999999865
Q T0619 16 TDAADASIKSFRYRLKHFVEWAEERDIT-------AMRELTGWKLDEYET-FRRGSDVSPATLNGEMQTLKNWLEYLARI 87 (111)
Q Consensus 16 ~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~-------~l~~it~~~i~~y~~-~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~ 87 (111)
++..+..++.....+....+|..++.-. ....++...+++|+. |.+.-.+.- =.....+|..||+++.+.
T Consensus 183 r~~~~~~~~~~~~a~~~s~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~l~~Y~~~~~y~l--~~~~~~gL~~f~~~a~~~ 260 (272)
T 2czl_A 183 RDLGEGLIRALDEAVRRSVAYALAHPEEALDYMRAHAQELSDEVIWAHVHTYVNAFSLDV--GEEGERAVARLFAEAEAR 260 (272)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHSGGGGHHHHHHHCTTSCHHHHHHHHHHHCSHHHHCC--HHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHC
T ss_conf 134889999999999986999997879899999998520999999999999986545179--989999999999999987
Q ss_pred CCCCCCC
Q ss_conf 8855570
Q T0619 88 DVVDEDL 94 (111)
Q Consensus 88 ~~i~~np 94 (111)
|.++.-|
T Consensus 261 Gl~~~~p 267 (272)
T 2czl_A 261 GLAAPSP 267 (272)
T ss_dssp TSSCCCS
T ss_pred CCCCCCC
T ss_conf 9999998
No 32
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=28.63 E-value=25 Score=14.50 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999997779999977520100126889999999887567777999999999999999999865885
Q T0619 22 SIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVV 90 (111)
Q Consensus 22 Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~~i 90 (111)
+.-.....+..|++||.+.|+....-++..|+.. ++ . ....+.+|.++-+.+...|+-
T Consensus 65 ~~~~~~eNi~~fL~~~~~~gv~~~~~f~~~DL~e------~~--n---~~~V~~~L~~L~~~~~~~g~~ 122 (159)
T 1p2x_A 65 LQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYE------GK--N---LPKVIYCIHALSYFLSMQDLA 122 (159)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCCGGGCCCHHHHSS------CS--C---HHHHHHHHHHHHHHHHTTTSS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC------CC--C---HHHHHHHHHHHHHHHHHCCCC
T ss_conf 3279999999999999985998726307178746------98--8---789999999999999976998
No 33
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=28.20 E-value=26 Score=14.45 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889999999998730378899999999777999997752---010012688999999988756777799999999999
Q T0619 1 LSPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEERD---ITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTL 77 (111)
Q Consensus 1 i~p~e~ie~yL~~~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~---~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~l 77 (111)
.||+|+++.=-+. ..-+...-++|+....+|.+||...- +-.+..+|..+-......+ |+.+...+|
T Consensus 370 ~TpeeAl~~aQ~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 439 (477)
T 2vgq_A 370 QTVDEALKDAQTN--SAMAFAEDKTYKYICRNFSNFCNVDVVEILPYLPCLTARDQDRLRATC--------TLSGNRDTL 439 (477)
T ss_dssp SCHHHHHHHHHHH--HHHHHHHHHHHHHHHHTGGGGTTCCHHHHGGGCTTSCHHHHHHHHHHH--------HHHCHHHHH
T ss_pred CCHHHHHHHHHHH--HHHHHHHHCCCCEEEECHHCCCCCCHHHHCCCCCCCCCCCHHHHHHEE--------EECCCCHHH
T ss_conf 9899999999999--999998735884754100123563442201655334201253361335--------623771349
Q ss_pred HHHHHHHHHC-CCCC
Q ss_conf 9999999865-8855
Q T0619 78 KNWLEYLARI-DVVD 91 (111)
Q Consensus 78 r~f~~~l~~~-~~i~ 91 (111)
-.+|+.+.++ ||++
T Consensus 440 ~~~~~~~~~~~~~~~ 454 (477)
T 2vgq_A 440 WHLFNTLQRRPGWVE 454 (477)
T ss_dssp HHHHHHHTTSTTHHH
T ss_pred HHHHHHHHCCCCHHH
T ss_conf 999877613874699
No 34
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=27.34 E-value=27 Score=14.35 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHCCCCC
Q ss_conf 777999999999999---------9999998658855
Q T0619 64 DVSPATLNGEMQTLK---------NWLEYLARIDVVD 91 (111)
Q Consensus 64 ~~s~~Ti~~~l~~lr---------~f~~~l~~~~~i~ 91 (111)
++|++||..+++.+. .++.++.+.|+++
T Consensus 42 ~iS~~TV~~h~~~i~~Klgv~~r~elv~~a~~~Gl~P 78 (79)
T 1x3u_A 42 DISPRTVEVHRANVMAKMKAKSLPHLVRMALAGGFGP 78 (79)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf 9789999999999999828999999999999949998
No 35
>3bhw_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.50A {Magnetospirillum magneticum amb-1}
Probab=25.88 E-value=28 Score=14.19 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCC
Q ss_conf 126889999999887567-----77799999999999999999986588555703216788998
Q T0619 46 RELTGWKLDEYETFRRGS-----DVSPATLNGEMQTLKNWLEYLARIDVVDEDLPEKVHVPTIL 104 (111)
Q Consensus 46 ~~it~~~i~~y~~~l~~~-----~~s~~Ti~~~l~~lr~f~~~l~~~~~i~~np~~~i~~Pk~~ 104 (111)
.+|+..++..|+..+... .+|.+|+.+-. ..+++.|.+-|+++++-...+.+|...
T Consensus 118 ~~L~~~d~~~F~~~k~~~~~~l~~wSdsT~kKl~---q~~~~~L~eaG~L~~~~~~~i~~~~l~ 178 (209)
T 3bhw_A 118 PDLPRKMWDQYLEQCRNRDPLMPVWQDSTANKLA---DCVYRILVEVGYITDSKTYRLKSVRIS 178 (209)
T ss_dssp CBCCHHHHHHHHHHHHHHCTTC----CHHHHHHH---HHHHHHHHHHTCCC----CBCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHHHHHHHCCCCCCCCCCCEECCCCC
T ss_conf 7779888999999986528640452999999999---999999999287666567802068689
No 36
>2fj6_A Hypothetical UPF0346 protein YOZE; SR391, structure, autostructure, northeast structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.60.15.1
Probab=24.97 E-value=13 Score=16.36 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=3.4
Q ss_pred CHHHHHHHHH
Q ss_conf 8899999998
Q T0619 49 TGWKLDEYET 58 (111)
Q Consensus 49 t~~~i~~y~~ 58 (111)
+-.-|..|+.
T Consensus 39 d~~eis~YLe 48 (82)
T 2fj6_A 39 DYHEISSYLE 48 (82)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 8899999999
No 37
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=24.84 E-value=30 Score=14.06 Aligned_cols=55 Identities=9% Similarity=-0.035 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999777999997752010012688999999988756777799999999999999999986588
Q T0619 24 KSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDV 89 (111)
Q Consensus 24 ~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~~ 89 (111)
-.++..+..|+++|..-|+....-.+..|+.. ++ . ..+.+.+|.++-+.+...|.
T Consensus 70 f~~~eNI~~FL~~~~~~Gv~~~~lF~~~DL~e------~k--n---~~~V~~cL~aL~~~a~~~g~ 124 (136)
T 1wyp_A 70 WHQLENIGNFIKAITKYGVKPHDIFEANDLFE------NT--N---HTQVQSTLLALASMAKTKGN 124 (136)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCCHHHHHS------CS--C---SHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHC------CC--C---HHHHHHHHHHHHHHHHHCCC
T ss_conf 58999999999999993989612567168881------77--8---69999999999999998289
No 38
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=24.72 E-value=30 Score=14.05 Aligned_cols=90 Identities=11% Similarity=0.018 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH---HHHHH------------HHHHHH
Q ss_conf 888999999999873037889999999977799999775201001268899999---99887------------567777
Q T0619 2 SPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDE---YETFR------------RGSDVS 66 (111)
Q Consensus 2 ~p~e~ie~yL~~~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~---y~~~l------------~~~~~s 66 (111)
.|.+.+.+|.... ++++.....-..- ++.+.+.++. ..=++..+.+ |+... ...|.+
T Consensus 101 ~p~~~i~r~~~~L--~l~~~~~~~~~~i----~~~~~~~~l~--~gr~P~siaaa~Iy~a~~~~~~~~~~~~Ia~~~~vs 172 (207)
T 1c9b_A 101 TTGDFMSRFCSNL--CLPKQVQMAATHI----ARKAVELDLV--PGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVA 172 (207)
T ss_dssp CTHHHHHHHHHHT--TCCHHHHHHHHHH----HHHHHHTTCS--TTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHC--CCCHHHHHHHHHH----HHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf 8788899998852--5638789999999----9999987675--599806699999999999978999999999997988
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCC
Q ss_conf 999999999999999999865885557032167
Q T0619 67 PATLNGEMQTLKNWLEYLARIDVVDEDLPEKVH 99 (111)
Q Consensus 67 ~~Ti~~~l~~lr~f~~~l~~~~~i~~np~~~i~ 99 (111)
..||++...-|......+...++....|.+.++
T Consensus 173 ~~TI~~~yk~l~~~~~~l~~~~~~~~~~~~~lp 205 (207)
T 1c9b_A 173 DVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLP 205 (207)
T ss_dssp HHHHHHHHHHHGGGHHHHSCSSCCCSSCSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHCC
T ss_conf 999999999999999981988764258965468
No 39
>1h0b_A Cellulase; endoglucanase, hydrolase; HET: EPE; 1.8A {Rhodothermus marinus} SCOP: b.29.1.11
Probab=23.95 E-value=31 Score=13.96 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=13.9
Q ss_pred HHHHHHHHHHCCCCCCCC
Q ss_conf 999999998658855570
Q T0619 77 LKNWLEYLARIDVVDEDL 94 (111)
Q Consensus 77 lr~f~~~l~~~~~i~~np 94 (111)
|+.|++||+.+|++..+-
T Consensus 180 Lk~fIdYlva~g~l~~~e 197 (256)
T 1h0b_A 180 LKAFIDDAVARGYIRPEW 197 (256)
T ss_dssp HHHHHHHHHHTTSSCTTS
T ss_pred HHHHHHHHHHCCCCCHHH
T ss_conf 899899999718988356
No 40
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=23.84 E-value=31 Score=13.94 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHCCCCCCC
Q ss_conf 77779999999999999---------99999865885557
Q T0619 63 SDVSPATLNGEMQTLKN---------WLEYLARIDVVDED 93 (111)
Q Consensus 63 ~~~s~~Ti~~~l~~lr~---------f~~~l~~~~~i~~n 93 (111)
-++|.+||..++..+.. ++.|+.+.|+++.|
T Consensus 59 L~iS~~TV~~~~~~i~~KLgv~~~~elv~~a~~~Gli~~d 98 (99)
T 1p4w_A 59 LNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSMTPVD 98 (99)
T ss_dssp HTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTCSSCC
T ss_pred HCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
T ss_conf 7969999999999999982899999999999996899888
No 41
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=23.74 E-value=31 Score=13.93 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCHH
Q ss_conf 899999999777999997752010012688999999988756777799999999999999999986--5885557032
Q T0619 21 ASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLAR--IDVVDEDLPE 96 (111)
Q Consensus 21 ~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~--~~~i~~np~~ 96 (111)
.+.-..+..+..|++||...|+....-.+..|+.. ++ . +.+.+.+|.++-+.+.. .+....+|..
T Consensus 69 ~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e------~k--n---~~~Vi~cL~aL~~~a~~~~~~~~~g~P~~ 135 (144)
T 1ujo_A 69 SMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYE------GK--D---MAAVQRTLMALGSLAVTKNDGNYRGDPNW 135 (144)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHT------CS--C---HHHHHHHHHHHHHHHHHHCSSCCSSCSTT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH------CC--C---HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 63007999999999999991898535445278871------77--8---89999999999999997067888899875
No 42
>2kvv_A Putative excisionase; DNA binding, WHTH motif, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Klebsiella pneumoniae}
Probab=23.70 E-value=9.2 Score=17.27 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=12.5
Q ss_pred HHCCCHHHHHHHHHH
Q ss_conf 730378899999999
Q T0619 15 QTDAADASIKSFRYR 29 (111)
Q Consensus 15 ~~~~s~~Ti~~Y~~~ 29 (111)
..|++++||+.||..
T Consensus 19 ~tGL~~gtI~~aR~~ 33 (78)
T 2kvv_A 19 RTGLGARQIESYRQG 33 (78)
T ss_dssp HHCCCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHH
T ss_conf 977887799999998
No 43
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=23.19 E-value=32 Score=13.87 Aligned_cols=65 Identities=9% Similarity=-0.011 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCC
Q ss_conf 99999997779999977520100126889999999887567777999999999999999999865885557032167
Q T0619 23 IKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVVDEDLPEKVH 99 (111)
Q Consensus 23 i~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~~i~~np~~~i~ 99 (111)
.-.++..+..|+++|.+-|+....-.+..|+.. ++ -+...+.+|.++-+.+...|. ...|.-+++
T Consensus 69 ~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e------~k-----n~~qV~~cL~aL~r~a~~~g~-~~~p~lg~k 133 (146)
T 1wyn_A 69 NWHQLENLSNFIKAMVSYGMNPVDLFEANDLFE------SG-----NMTQVQVSLLALAGKAKTKGL-QSGVDIGVK 133 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHT------CS-----CSHHHHHHHHHHHHHHGGGTS-CCCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC------CC-----CHHHHHHHHHHHHHHHHHCCC-CCCCCCCCC
T ss_conf 088999999999999981999536156521643------78-----879999999999999998299-889979973
No 44
>2hra_A Glutamyl-tRNA synthetase, cytoplasmic; GST-fold, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2hrk_A 2hsm_A
Probab=21.51 E-value=34 Score=13.65 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--C-CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 899999999987303788999999997779999977520100--1-268899999998875677779999-999999999
Q T0619 4 REARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAM--R-ELTGWKLDEYETFRRGSDVSPATL-NGEMQTLKN 79 (111)
Q Consensus 4 ~e~ie~yL~~~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l--~-~it~~~i~~y~~~l~~~~~s~~Ti-~~~l~~lr~ 79 (111)
+..++.||......+.+.-.+.-...|..+-.+|..+ ..+ . .+|.+|+.-|-.. +........+ +.....|..
T Consensus 90 ~a~v~~Wl~fa~~~l~~~~~~~l~~~L~~Ld~~L~~r--tyLvgg~~lTlADi~v~~~l-~~~~~~~~~~~~~~y~nv~R 166 (209)
T 2hra_A 90 KEQVAKWVNLAQKELVIKNFAKLSQSLETLDSQLNLR--TFILGGLKYSAADVACWGAL-RSNGMCGSIIKNKVDVNVSR 166 (209)
T ss_dssp HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTSSC--SSTTCCSSCCHHHHHHHHHH-HHCTTHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC--CEEECCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHCHHHHH
T ss_conf 9999999999873024213999999999999987319--56636861778999999999-98576311555301736999
Q ss_pred HHHHHHHC
Q ss_conf 99999865
Q T0619 80 WLEYLARI 87 (111)
Q Consensus 80 f~~~l~~~ 87 (111)
||+++...
T Consensus 167 W~~~i~~~ 174 (209)
T 2hra_A 167 WYTLLEMD 174 (209)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHC
T ss_conf 99999857
No 45
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=20.72 E-value=28 Score=14.22 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37889999999977799999775
Q T0619 18 AADASIKSFRYRLKHFVEWAEER 40 (111)
Q Consensus 18 ~s~~Ti~~Y~~~l~~f~~f~~~~ 40 (111)
.++.|...+..+|..|+.|..+.
T Consensus 199 gt~a~~~q~a~DVv~FL~w~aEP 221 (269)
T 2qjy_B 199 GHDASVHAMAEDVSAFLMWAAEP 221 (269)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 76135999999999999987086
No 46
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.65 E-value=36 Score=13.54 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHCCCCC
Q ss_conf 777999999999999---------9999998658855
Q T0619 64 DVSPATLNGEMQTLK---------NWLEYLARIDVVD 91 (111)
Q Consensus 64 ~~s~~Ti~~~l~~lr---------~f~~~l~~~~~i~ 91 (111)
|++++||..+++.+. ....++.+.|+|+
T Consensus 37 ~is~~TV~~~~~~i~~Klgv~~r~~lv~~a~~~Gli~ 73 (74)
T 1fse_A 37 FISEKTVRNHISNAMQKLGVKGRSQAVVELLRMGELE 73 (74)
T ss_dssp TSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf 8987799999999999858999999999999956956
No 47
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=20.57 E-value=36 Score=13.53 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHCCCCC
Q ss_conf 7777999999999999---------9999998658855
Q T0619 63 SDVSPATLNGEMQTLK---------NWLEYLARIDVVD 91 (111)
Q Consensus 63 ~~~s~~Ti~~~l~~lr---------~f~~~l~~~~~i~ 91 (111)
-+++++||.++++.+. .+..|+.+.|+|+
T Consensus 54 L~iS~~TV~~~~~~i~~Kl~v~~r~elv~~a~~~gli~ 91 (91)
T 2rnj_A 54 SHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ 91 (91)
T ss_dssp HTCCHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHTCCC
T ss_pred HCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
T ss_conf 78888799999999999809999999999999948989
Done!