Query T0619 HmR208A, Haloarcula marismortui, 111 residues
Match_columns 111
No_of_seqs 101 out of 1928
Neff 8.3
Searched_HMMs 11830
Date Thu Jul 22 15:01:04 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0619.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0619.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02899 Phage_integr_N: Phage 99.5 2.3E-14 1.9E-18 107.9 9.4 82 7-88 1-84 (84)
2 PF02899 Phage_integr_N: Phage 95.2 0.0096 8.1E-07 34.4 4.3 39 53-91 1-40 (84)
3 PF11922 DUF3440: Domain of un 67.9 3 0.00025 18.6 5.0 34 54-88 68-101 (183)
4 PF04221 RelB: RelB antitoxin; 52.1 5.7 0.00048 16.8 4.5 42 48-95 8-49 (83)
5 PF06806 DUF1233: Putative exc 50.5 6 0.00051 16.7 3.6 34 1-39 4-37 (72)
6 PF01726 LexA_DNA_bind: LexA D 49.7 6.2 0.00052 16.6 5.0 49 30-95 12-61 (65)
7 PF10664 NdhM: Cyanobacterial 44.3 7.5 0.00063 16.1 3.6 43 57-99 55-97 (108)
8 PF09339 HTH_IclR: IclR helix- 41.5 5.4 0.00045 17.0 1.9 34 48-94 19-52 (52)
9 PF09674 DUF2400: Protein of u 38.2 7.5 0.00063 16.1 2.3 29 72-100 143-172 (232)
10 PF06039 Mqo: Malate:quinone o 31.0 12 0.001 14.8 4.2 35 65-100 75-109 (488)
11 PF00872 Transposase_mut: Tran 30.5 12 0.001 14.7 5.3 73 17-93 87-160 (381)
12 PF00325 Crp: Bacterial regula 24.1 16 0.0014 14.0 2.6 25 48-78 3-27 (32)
13 PF08849 DUF1819: Putative inn 22.2 18 0.0015 13.7 5.1 56 46-104 114-174 (189)
14 PF01125 G10: G10 protein; In 22.0 12 0.00098 14.9 0.9 26 78-103 73-98 (145)
15 PF09692 Arb1: Argonaute siRNA 20.4 19 0.0016 13.5 3.9 27 66-92 139-165 (402)
No 1
>PF02899 Phage_integr_N: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment , . The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 2oxo_A 1z1g_A 1z1b_B 1z19_B 1p7d_A 1a0p_A.
Probab=99.52 E-value=2.3e-14 Score=107.92 Aligned_cols=82 Identities=22% Similarity=0.456 Sum_probs=76.5
Q ss_pred HHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999987--303788999999997779999977520100126889999999887567777999999999999999999
Q T0619 7 RDRYLAHRQ--TDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYL 84 (111)
Q Consensus 7 ie~yL~~~~--~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l 84 (111)
|+.|++++. +++|++|+++|+.+|+.|++||++.+...+.+|+..++.+|+.++...+++++|+++++++||+||+||
T Consensus 1 i~~fl~~l~~~~~ls~~Ti~~Y~~~l~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~Ti~~~~~~lr~f~~~l 80 (84)
T PF02899_consen 1 IEAFLEYLEVERGLSPNTIRSYRRDLRRFLRFLGEHGIRDWDDITTEDVRAYLRYLRKEGLSPSTINRRLSALRSFFRWL 80 (84)
T ss_dssp HHHHHHHHHHCT-S-HHHHHHHHHHHHHHHHHHHC----BCCC--HHHHHHHHHS-TT----HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98989999884387899999999999999998765102320117799999999998877965999999999999999999
Q ss_pred HHCC
Q ss_conf 8658
Q T0619 85 ARID 88 (111)
Q Consensus 85 ~~~~ 88 (111)
.++|
T Consensus 81 ~~~g 84 (84)
T PF02899_consen 81 KREG 84 (84)
T ss_dssp HHTT
T ss_pred HHCC
T ss_conf 9862
No 2
>PF02899 Phage_integr_N: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment , . The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 2oxo_A 1z1g_A 1z1b_B 1z19_B 1p7d_A 1a0p_A.
Probab=95.15 E-value=0.0096 Score=34.37 Aligned_cols=39 Identities=18% Similarity=0.456 Sum_probs=31.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999998875-677779999999999999999998658855
Q T0619 53 LDEYETFRR-GSDVSPATLNGEMQTLKNWLEYLARIDVVD 91 (111)
Q Consensus 53 i~~y~~~l~-~~~~s~~Ti~~~l~~lr~f~~~l~~~~~i~ 91 (111)
|++|+.++. ..++|++|+..|...|+.|+.||...+..+
T Consensus 1 i~~fl~~l~~~~~ls~~Ti~~Y~~~l~~f~~~~~~~~~~~ 40 (84)
T PF02899_consen 1 IEAFLEYLEVERGLSPNTIRSYRRDLRRFLRFLGEHGIRD 40 (84)
T ss_dssp HHHHHHHHHHCT-S-HHHHHHHHHHHHHHHHHHHC----B
T ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9898999988438789999999999999999876510232
No 3
>PF11922 DUF3440: Domain of unknown function (DUF3440)
Probab=67.88 E-value=3 Score=18.58 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99998875677779999999999999999998658
Q T0619 54 DEYETFRRGSDVSPATLNGEMQTLKNWLEYLARID 88 (111)
Q Consensus 54 ~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~ 88 (111)
++|..+|... +.+.|.+.|+.-|..|+.|....|
T Consensus 68 k~Y~~FLL~s-lP~~~r~~Y~~Ki~~~i~~w~~~g 101 (183)
T PF11922_consen 68 KSYMEFLLSS-LPEKTREHYRNKIAVSIKWWRKKG 101 (183)
T ss_pred HHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999971-899999999999999999999738
No 4
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes , . RelB stably binds RelE, presumably deactivating it.; PDB: 2kc8_B 2k29_B.
Probab=52.09 E-value=5.7 Score=16.84 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 688999999988756777799999999999999999986588555703
Q T0619 48 LTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVVDEDLP 95 (111)
Q Consensus 48 it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~~i~~np~ 95 (111)
|+...-.....-+..-|+++++ +++.|++++++++.|+-++.
T Consensus 8 id~~lK~~a~~vl~~~Gls~s~------Ai~~f~~qiv~~~~iPF~~~ 49 (83)
T PF04221_consen 8 IDEELKEEAEAVLEELGLSMSD------AIRMFLKQIVREQGIPFELS 49 (83)
T ss_dssp --HHHHHHHHHHHHH----HHH------HHHHHHHHHHHHSS-S----
T ss_pred CCHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHCCCCCCCCC
T ss_conf 4999999999999992999999------99999999998089999767
No 5
>PF06806 DUF1233: Putative excisionase (DUF1233); InterPro: IPR009634 This family consists of several putative phage excisionase proteins of around 80 residues in length.
Probab=50.52 E-value=6 Score=16.68 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988899999999987303788999999997779999977
Q T0619 1 LSPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEE 39 (111)
Q Consensus 1 i~p~e~ie~yL~~~~~~~s~~Ti~~Y~~~l~~f~~f~~~ 39 (111)
|.|.+.+..-+---..|+++.|++.||.. .|++.
T Consensus 4 i~p~kWV~e~~L~a~tGl~~~tI~~~R~k-----~W~eG 37 (72)
T PF06806_consen 4 IVPSKWVSEEVLMALTGLTPGTIKRYRQK-----SWMEG 37 (72)
T ss_pred ECHHHHHHHHHHHHHHCCCHHHHHHHHHH-----HHHHC
T ss_conf 45356550889999878998899999998-----87611
No 6
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif . This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0008992 repressor LexA activity, 0006508 proteolysis; PDB: 1lea_A 1jhh_A 1jhf_A 1leb_A.
Probab=49.73 E-value=6.2 Score=16.60 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 777999997752010012688999999988756777-799999999999999999986588555703
Q T0619 30 LKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDV-SPATLNGEMQTLKNWLEYLARIDVVDEDLP 95 (111)
Q Consensus 30 l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~-s~~Ti~~~l~~lr~f~~~l~~~~~i~~np~ 95 (111)
|.-..+|+.+.|.. -+...|.+-+ |+ |++||..++.+|. +.|+|..+|-
T Consensus 12 L~~I~~~~~~~G~~----Pt~rEI~~~~------gl~S~~tV~~~L~~Le-------~kG~I~r~~~ 61 (65)
T PF01726_consen 12 LDFIKDYIREHGYP----PTVREIAEAL------GLKSPSTVHKHLKALE-------KKGYITRDPG 61 (65)
T ss_dssp HHHHHHHHHH----------HHHHHHH----------SHHHHHHHHHHHH-------H---EE----
T ss_pred HHHHHHHHHHCCCC----CCHHHHHHHC------CCCCCHHHHHHHHHHH-------HCCCEECCCC
T ss_conf 99999999983889----8899999881------9998099999999999-------9829516899
No 7
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M
Probab=44.27 E-value=7.5 Score=16.07 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCC
Q ss_conf 9887567777999999999999999999865885557032167
Q T0619 57 ETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVVDEDLPEKVH 99 (111)
Q Consensus 57 ~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~~i~~np~~~i~ 99 (111)
++...+..++.-+..+.=+-|-.|.+.|.+.|.|+.||-..|-
T Consensus 55 Ve~~~G~~LtdYnLRrIGSdLE~~IR~LLq~GeisYN~~~RVl 97 (108)
T PF10664_consen 55 VESYAGEDLTDYNLRRIGSDLEHFIRSLLQAGEISYNLDSRVL 97 (108)
T ss_pred HHHHCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 9973489720345877531789999999977831117776234
No 8
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N-terminus that is similar to that of other DNA-binding proteins .; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2ia2_C 2g7u_D 2o0y_D 1mkm_B.
Probab=41.45 E-value=5.4 Score=17.00 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 68899999998875677779999999999999999998658855570
Q T0619 48 LTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVVDEDL 94 (111)
Q Consensus 48 it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~~i~~np 94 (111)
++..+|. ..-|++.+|+.+++.+|. +.|++..||
T Consensus 19 ~t~~eia------~~~gl~~st~~r~l~~L~-------~~g~v~~d~ 52 (52)
T PF09339_consen 19 LTLSEIA------RALGLPKSTVHRLLQTLE-------EAGFVERDP 52 (52)
T ss_dssp EEHHHHH------HHTT--HHHHHHHHHHHH-------HT--EEE--
T ss_pred CCHHHHH------HHHCCCHHHHHHHHHHHH-------HCCCEEECC
T ss_conf 8999999------998919999999999999-------991942092
No 9
>PF09674 DUF2400: Protein of unknown function (DUF2400)
Probab=38.15 E-value=7.5 Score=16.07 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHCCC-CCCCCHHCCCC
Q ss_conf 999999999999986588-55570321678
Q T0619 72 GEMQTLKNWLEYLARIDV-VDEDLPEKVHV 100 (111)
Q Consensus 72 ~~l~~lr~f~~~l~~~~~-i~~np~~~i~~ 100 (111)
.-...+.-|++|++|.+- |+-+....|.+
T Consensus 143 Sa~KRlnMfLRWMVR~d~gVD~GlW~~i~p 172 (232)
T PF09674_consen 143 SACKRLNMFLRWMVRKDDGVDFGLWKSISP 172 (232)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 669999998997402788878746688878
No 10
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle
Probab=31.03 E-value=12 Score=14.75 Aligned_cols=35 Identities=11% Similarity=0.285 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCC
Q ss_conf 779999999999999999998658855570321678
Q T0619 65 VSPATLNGEMQTLKNWLEYLARIDVVDEDLPEKVHV 100 (111)
Q Consensus 65 ~s~~Ti~~~l~~lr~f~~~l~~~~~i~~np~~~i~~ 100 (111)
-++..||..+..-|+|+.|++++|.+. ||-+.|..
T Consensus 75 ~KA~~Ine~FeiSrqfWa~lv~~g~l~-~p~~FI~~ 109 (488)
T PF06039_consen 75 SKAVKINEQFEISRQFWAYLVEKGILP-DPESFINP 109 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHCCC
T ss_conf 888999999999999999998678878-86885357
No 11
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families , , . The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase .; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=30.49 E-value=12 Score=14.70 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 0378899999999777999997752010012688999999988756-7777999999999999999999865885557
Q T0619 17 DAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRG-SDVSPATLNGEMQTLKNWLEYLARIDVVDED 93 (111)
Q Consensus 17 ~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~-~~~s~~Ti~~~l~~lr~f~~~l~~~~~i~~n 93 (111)
+..|.-+..|++....+-+.+-.. .+.-++..++..-+..+-+ .++|++||.+....+..-..=+..+.+ +..
T Consensus 87 ~f~p~i~~~y~R~~~~l~~~i~~l---y~~GvStr~i~~~l~~l~g~~~~S~s~vS~i~~~~~~~~~~w~~R~L-~~~ 160 (381)
T PF00872_consen 87 SFEPQIVPKYQRRESALEALIISL---YLKGVSTRDIQEALEELYGEVAVSPSTVSRITDKLDEEVKAWQNRPL-EEE 160 (381)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC-CCC
T ss_conf 526000330431206888889998---85021134676789987533225805445578887899999974435-657
No 12
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA , . Within this family, the HTH motif is situated towards the C-terminus. ; GO: 0003700 transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2gzw_A 1o3q_A 1lb2_A 1i6x_A 1ruo_B 1hw5_B 1zrf_A 1i5z_B 1j59_B 1o3s_A ....
Probab=24.07 E-value=16 Score=13.97 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6889999999887567777999999999999
Q T0619 48 LTGWKLDEYETFRRGSDVSPATLNGEMQTLK 78 (111)
Q Consensus 48 it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr 78 (111)
++.+++.+++ |.++.|+++.++.++
T Consensus 3 lt~~elA~~~------G~tretvsR~l~~l~ 27 (32)
T PF00325_consen 3 LTHQELADLL------GTTRETVSRILSRLR 27 (32)
T ss_dssp --HHHHHHHC------TC-HHHHHHHHHHHH
T ss_pred CCHHHHHHHH------CCCHHHHHHHHHHHH
T ss_conf 7999999886------986999999999999
No 13
>PF08849 DUF1819: Putative inner membrane protein (DUF1819); InterPro: IPR014948 These proteins are functionally uncharacterised. Several are annotated as putative inner membrane proteins. ; PDB: 3bhw_B.
Probab=22.19 E-value=18 Score=13.74 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCC
Q ss_conf 126889999999887567-----77799999999999999999986588555703216788998
Q T0619 46 RELTGWKLDEYETFRRGS-----DVSPATLNGEMQTLKNWLEYLARIDVVDEDLPEKVHVPTIL 104 (111)
Q Consensus 46 ~~it~~~i~~y~~~l~~~-----~~s~~Ti~~~l~~lr~f~~~l~~~~~i~~np~~~i~~Pk~~ 104 (111)
.+|+..++..|++.+... .++.+|+.+-. ..+++.|.+-|++++.-...|.+|...
T Consensus 114 ~~l~~~d~~~F~~~k~~~~~~la~wsdsT~~Kl~---q~~~~iL~eaglL~~~~~~~i~~~~l~ 174 (189)
T PF08849_consen 114 LDLTKEDWDAFFERKREQHPELASWSDSTRKKLR---QVLFRILREAGLLESSRNKRIQPVFLS 174 (189)
T ss_dssp -B--HHHHHHHHHHHHHH-TTS----HHHHHHHH---HHHHHHHHH---BS-TTT-BB------
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH---HHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 5789899999999987639201335899999999---999999998287466666841256128
No 14
>PF01125 G10: G10 protein; InterPro: IPR001748 A Xenopus protein known as G10 has been found to be highly conserved in a wide range of eukaryotic species. The function of G10 is still unknown. G10 is a protein of about 17 to 18 kDa (143 to 157 residues) which is hydrophilic and whose C-terminal half is rich in cysteines and could be involved in metal-binding.; GO: 0005634 nucleus
Probab=21.98 E-value=12 Score=14.87 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=21.2
Q ss_pred HHHHHHHHHCCCCCCCCHHCCCCCCC
Q ss_conf 99999998658855570321678899
Q T0619 78 KNWLEYLARIDVVDEDLPEKVHVPTI 103 (111)
Q Consensus 78 r~f~~~l~~~~~i~~np~~~i~~Pk~ 103 (111)
+.+|+||.++++++.+...+=+.|..
T Consensus 73 keLYd~ll~~~~aD~~LIaKWkk~GY 98 (145)
T PF01125_consen 73 KELYDWLLKEKYADANLIAKWKKPGY 98 (145)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999847527999998724458
No 15
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1
Probab=20.37 E-value=19 Score=13.50 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 799999999999999999986588555
Q T0619 66 SPATLNGEMQTLKNWLEYLARIDVVDE 92 (111)
Q Consensus 66 s~~Ti~~~l~~lr~f~~~l~~~~~i~~ 92 (111)
...-+.-...++|.|++|+..++.++.
T Consensus 139 ~ee~v~lat~tIrNFLnYlL~HdVCPE 165 (402)
T PF09692_consen 139 GEEMVKLATDTIRNFLNYLLYHDVCPE 165 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 599999999999999999996135800
Done!