Query T0619 HmR208A, Haloarcula marismortui, 111 residues
Match_columns 111
No_of_seqs 101 out of 1928
Neff 8.3
Searched_HMMs 15564
Date Thu Jul 22 15:00:11 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0619.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0619.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a0pa1 a.60.9.1 (A:3-100) Rec 99.8 4.4E-19 2.8E-23 138.5 9.7 93 5-98 4-98 (98)
2 d1a0pa1 a.60.9.1 (A:3-100) Rec 99.8 1E-18 6.4E-23 136.3 9.8 94 4-98 3-98 (98)
3 d1f44a1 a.60.9.1 (A:20-129) Cr 99.4 3.6E-13 2.3E-17 101.1 6.0 84 4-88 2-87 (110)
4 d1a0pa1 a.60.9.1 (A:3-100) Rec 95.8 0.0056 3.6E-07 36.6 4.3 40 50-89 3-43 (98)
5 d1a0pa1 a.60.9.1 (A:3-100) Rec 95.8 0.006 3.9E-07 36.4 4.5 40 50-89 3-43 (98)
6 d1f44a1 a.60.9.1 (A:20-129) Cr 94.6 0.012 7.8E-07 34.5 2.9 36 54-89 6-42 (110)
7 d1vola2 a.74.1.2 (A:208-316) T 48.5 8.5 0.00055 16.5 8.5 91 1-99 2-107 (109)
8 d1ou8a_ b.136.1.1 (A:) Stringe 39.3 8.2 0.00053 16.6 2.0 30 76-105 8-41 (106)
9 d1qcrd2 a.3.1.3 (D:167-195) Cy 34.8 9 0.00058 16.3 1.6 21 18-38 8-28 (29)
10 d1yfna1 b.136.1.1 (A:4-111) St 34.2 11 0.00071 15.8 2.0 30 76-105 10-43 (108)
11 d2isya1 a.4.5.24 (A:2-64) Iron 34.1 14 0.00091 15.1 5.0 58 22-100 6-63 (63)
12 d1stza1 a.4.5.51 (A:14-100) He 33.7 10 0.00066 15.9 1.8 32 64-102 36-67 (87)
13 d1jhfa1 a.4.5.2 (A:2-72) LexA 31.9 15 0.00099 14.8 4.6 48 31-95 12-60 (71)
14 d1ou8a_ b.136.1.1 (A:) Stringe 31.6 13 0.00083 15.3 2.0 29 76-104 8-40 (106)
15 d1e3oc2 a.35.1.1 (C:1-75) Oct- 28.0 18 0.0012 14.4 3.9 44 28-73 7-50 (75)
16 d1zyba1 a.4.5.4 (A:148-220) Pr 26.8 14 0.00091 15.1 1.5 36 46-94 26-61 (73)
17 d1au7a2 a.35.1.1 (A:5-76) Pit- 26.6 19 0.0012 14.3 3.5 44 28-73 3-46 (72)
18 d2ev0a1 a.4.5.24 (A:2-62) Mang 26.4 19 0.0012 14.2 5.0 58 22-100 4-61 (61)
19 d1p4wa_ a.4.6.2 (A:) Transcrip 25.9 20 0.0013 14.2 3.2 30 64-93 48-86 (87)
20 d2dw4a1 a.4.1.18 (A:172-273) L 25.4 20 0.0013 14.1 3.2 67 20-100 33-101 (102)
21 d1b0nb_ a.34.1.1 (B:) SinI ant 23.8 21 0.0014 13.9 3.4 25 3-27 4-28 (31)
22 d1e3oc2 a.35.1.1 (C:1-75) Oct- 23.6 22 0.0014 13.9 3.9 44 28-73 7-50 (75)
23 d2czla1 c.94.1.1 (A:3-272) Hyp 22.2 23 0.0015 13.7 8.6 76 17-94 182-265 (270)
24 d1p2xa_ a.40.1.1 (A:) Ras GTPa 21.1 24 0.0016 13.6 4.9 60 20-90 63-122 (159)
No 1
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=99.78 E-value=4.4e-19 Score=138.53 Aligned_cols=93 Identities=16% Similarity=0.304 Sum_probs=87.4
Q ss_pred HHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987--3037889999999977799999775201001268899999998875677779999999999999999
Q T0619 5 EARDRYLAHRQ--TDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLE 82 (111)
Q Consensus 5 e~ie~yL~~~~--~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~ 82 (111)
+.|+.||.++. +|+|++|+++|+.+|..|++||.+.++. +.+++..+|++|+.++.++|++++|+++++++||+||+
T Consensus 4 ~~ie~fl~~l~~erg~S~~Ti~aY~~dl~~f~~~l~~~~~~-~~~i~~~~i~~yl~~l~~~g~s~~Ti~r~lsalr~ff~ 82 (98)
T d1a0pa1 4 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQ 82 (98)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCC-TTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999884959999999999999999988761644-11155899999999998524551059999999999999
Q ss_pred HHHHCCCCCCCCHHCC
Q ss_conf 9986588555703216
Q T0619 83 YLARIDVVDEDLPEKV 98 (111)
Q Consensus 83 ~l~~~~~i~~np~~~i 98 (111)
||.++|+|+.||+..|
T Consensus 83 ~l~~~~~i~~nP~~~i 98 (98)
T d1a0pa1 83 YLYREKFREDDPSAHL 98 (98)
T ss_dssp HHHHTTSSSSCTTSCC
T ss_pred HHHHCCCCCCCCCCCC
T ss_conf 9999789376833419
No 2
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=99.77 E-value=1e-18 Score=136.27 Aligned_cols=94 Identities=15% Similarity=0.286 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999987--303788999999997779999977520100126889999999887567777999999999999999
Q T0619 4 REARDRYLAHRQ--TDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWL 81 (111)
Q Consensus 4 ~e~ie~yL~~~~--~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~ 81 (111)
+..|+.||+++. +++|++|+++|+.+|+.|+.||.++++ .+.+++..+|++|+.++.++|++++||++++++||+||
T Consensus 3 ~~~i~~fl~~l~~er~~S~~T~~~Y~~dl~~f~~~l~~~~~-~~~~i~~~~i~~yl~~l~~~~~~~~Ti~r~lsalr~f~ 81 (98)
T d1a0pa1 3 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLF 81 (98)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSC-CTTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC-CHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 88899999999988443588899999999999988643288-75441778999999988630231456999999999999
Q ss_pred HHHHHCCCCCCCCHHCC
Q ss_conf 99986588555703216
Q T0619 82 EYLARIDVVDEDLPEKV 98 (111)
Q Consensus 82 ~~l~~~~~i~~np~~~i 98 (111)
+||+++|+++.||+..|
T Consensus 82 ~~l~~~g~i~~nP~~~i 98 (98)
T d1a0pa1 82 QYLYREKFREDDPSAHL 98 (98)
T ss_dssp HHHHHTTSSSSCTTSCC
T ss_pred HHHHHCCCCCCCCCCCC
T ss_conf 99986687525652339
No 3
>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
Probab=99.37 E-value=3.6e-13 Score=101.11 Aligned_cols=84 Identities=8% Similarity=0.103 Sum_probs=74.8
Q ss_pred HHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999998--7303788999999997779999977520100126889999999887567777999999999999999
Q T0619 4 REARDRYLAHR--QTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWL 81 (111)
Q Consensus 4 ~e~ie~yL~~~--~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~ 81 (111)
+|.++.|+.+. ++++|++|+++|+.+++.|.+||.+.++. +..++..+|..|+.++...|++++||++++++|++|+
T Consensus 2 ~~~~~~~~~~l~~~~~~S~nT~~aY~~dl~~f~~w~~~~~~~-~l~~~~~~v~~yl~~l~~~g~s~sTi~R~lsair~f~ 80 (110)
T d1f44a1 2 DEVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRK-WFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLH 80 (110)
T ss_dssp TTTHHHHHSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 689999999999986538989999999999999988651123-4623453789999999863888408999999999999
Q ss_pred HHHHHCC
Q ss_conf 9998658
Q T0619 82 EYLARID 88 (111)
Q Consensus 82 ~~l~~~~ 88 (111)
+|+-...
T Consensus 81 r~~g~~~ 87 (110)
T d1f44a1 81 RRSGLPR 87 (110)
T ss_dssp HHTTCCC
T ss_pred HHCCCCC
T ss_conf 9869999
No 4
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=95.82 E-value=0.0056 Score=36.60 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8999999988756-777799999999999999999986588
Q T0619 50 GWKLDEYETFRRG-SDVSPATLNGEMQTLKNWLEYLARIDV 89 (111)
Q Consensus 50 ~~~i~~y~~~l~~-~~~s~~Ti~~~l~~lr~f~~~l~~~~~ 89 (111)
...|++|+.++.. +|+|+.|+..|...|+.|+.||.+.+.
T Consensus 3 ~~~i~~fl~~l~~er~~S~~T~~~Y~~dl~~f~~~l~~~~~ 43 (98)
T d1a0pa1 3 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL 43 (98)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88899999999988443588899999999999988643288
No 5
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=95.80 E-value=0.006 Score=36.40 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 899999998875-6777799999999999999999986588
Q T0619 50 GWKLDEYETFRR-GSDVSPATLNGEMQTLKNWLEYLARIDV 89 (111)
Q Consensus 50 ~~~i~~y~~~l~-~~~~s~~Ti~~~l~~lr~f~~~l~~~~~ 89 (111)
...|+.|+.++. ++|+|+.|+..|...|+.|++||..++.
T Consensus 3 ~~~ie~fl~~l~~erg~S~~Ti~aY~~dl~~f~~~l~~~~~ 43 (98)
T d1a0pa1 3 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL 43 (98)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999999988495999999999999999998876164
No 6
>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
Probab=94.57 E-value=0.012 Score=34.49 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=17.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99998875-6777799999999999999999986588
Q T0619 54 DEYETFRR-GSDVSPATLNGEMQTLKNWLEYLARIDV 89 (111)
Q Consensus 54 ~~y~~~l~-~~~~s~~Ti~~~l~~lr~f~~~l~~~~~ 89 (111)
++|+++++ ++++|++|+..|.+.++.|..||...+.
T Consensus 6 ~~~~~~l~~~~~~S~nT~~aY~~dl~~f~~w~~~~~~ 42 (110)
T d1f44a1 6 KNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNR 42 (110)
T ss_dssp HHHHSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999998653898999999999999998865112
No 7
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.52 E-value=8.5 Score=16.49 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH---------------HHHHH
Q ss_conf 988899999999987303788999999997779999977520100126889999999887---------------56777
Q T0619 1 LSPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFR---------------RGSDV 65 (111)
Q Consensus 1 i~p~e~ie~yL~~~~~~~s~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l---------------~~~~~ 65 (111)
|+|.+.|++|...+ ++++...+.- ..++..+.+.++. ..-++..+.+-..|+ ...|.
T Consensus 2 i~~~d~i~Rf~s~L--~L~~~i~~~A----~~i~~~~~~~~~~--~Gr~p~~iaAa~iY~a~r~~~~~~t~~eIa~~~~v 73 (109)
T d1vola2 2 ITTGDFMSRFCSNL--CLPKQVQMAA----THIARKAVELDLV--PGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 73 (109)
T ss_dssp CCGGGTHHHHHHHH--TCCHHHHHHH----HHHHHHHHHTTCS--TTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHC--CCCHHHHHHH----HHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
T ss_conf 79899999999886--9698999999----9999999874985--79988879999999999981899899999999898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCC
Q ss_conf 7999999999999999999865885557032167
Q T0619 66 SPATLNGEMQTLKNWLEYLARIDVVDEDLPEKVH 99 (111)
Q Consensus 66 s~~Ti~~~l~~lr~f~~~l~~~~~i~~np~~~i~ 99 (111)
+..|+.+...-|.....-+...++....|.+.++
T Consensus 74 s~~tI~k~yk~l~~~~~~lip~~~~~~~~~~~lP 107 (109)
T d1vola2 74 ADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLP 107 (109)
T ss_dssp CHHHHHHHHHHHGGGHHHHSCSSCCCSSCGGGSC
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHCC
T ss_conf 9999999999999989873984421568987767
No 8
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]}
Probab=39.26 E-value=8.2 Score=16.59 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHCCCCCC---CCH-HCCCCCCCCC
Q ss_conf 99999999986588555---703-2167889987
Q T0619 76 TLKNWLEYLARIDVVDE---DLP-EKVHVPTILE 105 (111)
Q Consensus 76 ~lr~f~~~l~~~~~i~~---np~-~~i~~Pk~~~ 105 (111)
-||+++.||.++|+.+. |.. +++..|....
T Consensus 8 LiRA~y~W~~Dn~~TP~l~Vda~~~~v~VP~~~v 41 (106)
T d1ou8a_ 8 LLRAYYDWLVDNSFTPYLVVDATYLGVNVPVEYV 41 (106)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTSTTCBCCGGGC
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHC
T ss_conf 3999999998789987699995899884897990
No 9
>d1qcrd2 a.3.1.3 (D:167-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=34.79 E-value=9 Score=16.33 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 378899999999777999997
Q T0619 18 AADASIKSFRYRLKHFVEWAE 38 (111)
Q Consensus 18 ~s~~Ti~~Y~~~l~~f~~f~~ 38 (111)
-.|+|+.....++..|+.|..
T Consensus 8 Gt~at~~q~a~DV~~FL~WaA 28 (29)
T d1qcrd2 8 GTPATMSQVAKDVCTFLRWAA 28 (29)
T ss_pred CCCCCHHHHHHHHHHHHHHHC
T ss_conf 983869999999999998862
No 10
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=34.16 E-value=11 Score=15.76 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHCCCCCC---CCH-HCCCCCCCCC
Q ss_conf 99999999986588555---703-2167889987
Q T0619 76 TLKNWLEYLARIDVVDE---DLP-EKVHVPTILE 105 (111)
Q Consensus 76 ~lr~f~~~l~~~~~i~~---np~-~~i~~Pk~~~ 105 (111)
-||+++.||.++|..+. |.. +++..|....
T Consensus 10 liRA~y~W~~Dn~~TPyl~Vda~~~~v~VP~~~v 43 (108)
T d1yfna1 10 LLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYA 43 (108)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTSTTCBSCGGGC
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHC
T ss_conf 3999999998789987799994899976997990
No 11
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=34.15 E-value=14 Score=15.08 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCC
Q ss_conf 9999999977799999775201001268899999998875677779999999999999999998658855570321678
Q T0619 22 SIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVVDEDLPEKVHV 100 (111)
Q Consensus 22 Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~~i~~np~~~i~~ 100 (111)
|.+.|-..+-.+. +.+ ..+...+|..++ |.+++|+...+..|. +.|+|...|...|.+
T Consensus 6 s~EdYL~~I~~L~----~~~----~~v~~~~iA~~L------~vs~~SVt~mvkrL~-------~~Glv~~~~y~~i~L 63 (63)
T d2isya1 6 TTEMYLRTIYDLE----EEG----VTPLRARIAERL------DQSGPTVSQTVSRME-------RDGLLRVAGDRHLEL 63 (63)
T ss_dssp HHHHHHHHHHHHH----HTT----CCCCHHHHHHHH------TCCHHHHHHHHHHHH-------HTTSEEECTTSCEEE
T ss_pred HHHHHHHHHHHHH----HCC----CCCCHHHHHHHH------CCCCHHHHHHHHHHH-------HCCCEEECCCCCEEC
T ss_conf 8999999999998----558----977099999996------899443999999999-------888988768984149
No 12
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=33.75 E-value=10 Score=15.94 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCC
Q ss_conf 777999999999999999999865885557032167889
Q T0619 64 DVSPATLNGEMQTLKNWLEYLARIDVVDEDLPEKVHVPT 102 (111)
Q Consensus 64 ~~s~~Ti~~~l~~lr~f~~~l~~~~~i~~np~~~i~~Pk 102 (111)
++|++||++.++.|. +.|+|...-...-+.|.
T Consensus 36 ~~S~aTIRn~m~~LE-------~~G~l~~~h~s~GriPT 67 (87)
T d1stza1 36 EFSSATIRNDMKKLE-------YLGYIYQPHTSAGRIPT 67 (87)
T ss_dssp CSCHHHHHHHHHHHH-------HTTSEECCSSCSCBEEC
T ss_pred CCCHHHHHHHHHHHH-------HCCCCCCCCCCCCCCCC
T ss_conf 989899999999999-------87862488877877605
No 13
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=31.93 E-value=15 Score=14.85 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 77999997752010012688999999988756777-799999999999999999986588555703
Q T0619 31 KHFVEWAEERDITAMRELTGWKLDEYETFRRGSDV-SPATLNGEMQTLKNWLEYLARIDVVDEDLP 95 (111)
Q Consensus 31 ~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~-s~~Ti~~~l~~lr~f~~~l~~~~~i~~np~ 95 (111)
.-..+|..+.|.. .+...|.. .-|+ |++||..++.+|. +.|+|..+|.
T Consensus 12 ~~I~~~~~~~G~~----Ps~rei~~------~~g~~S~stv~~~l~~Le-------~kG~I~r~~~ 60 (71)
T d1jhfa1 12 DLIRDHISQTGMP----PTRAEIAQ------RLGFRSPNAAEEHLKALA-------RKGVIEIVSG 60 (71)
T ss_dssp HHHHHHHHHHSSC----CCHHHHHH------HTTCSSHHHHHHHHHHHH-------HTTSEEECSS
T ss_pred HHHHHHHHHHCCC----CCHHHHHH------HCCCCCHHHHHHHHHHHH-------HCCCEECCCC
T ss_conf 9999999982889----88999997------729999999999999999-------9759306899
No 14
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]} SCOP: d1ou9b_ d1ou9c_ d1oula_ d1ou9a_ d1twba_ d1oulb_ d1yfna1 d1yfnb1
Probab=31.63 E-value=13 Score=15.34 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHCCCCCCC---CH-HCCCCCCCC
Q ss_conf 999999999865885557---03-216788998
Q T0619 76 TLKNWLEYLARIDVVDED---LP-EKVHVPTIL 104 (111)
Q Consensus 76 ~lr~f~~~l~~~~~i~~n---p~-~~i~~Pk~~ 104 (111)
-||+++.|+.+.|..+-= .. .+|..|...
T Consensus 8 lira~~~Wi~Dn~~tPyi~Vda~~~gV~VP~~~ 40 (106)
T d1ou8a_ 8 LLRAYYDWLVDNSFTPYLVVDATYLGVNVPVEY 40 (106)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTSTTCBCCGGG
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHC
T ss_conf 677788998608999779998049980725320
No 15
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.97 E-value=18 Score=14.42 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9977799999775201001268899999998875677779999999
Q T0619 28 YRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGE 73 (111)
Q Consensus 28 ~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ 73 (111)
..|..|..-+..+.+. +. +|..|+..-+.-+.+..+|.+||.+-
T Consensus 7 ~Ele~Fa~~fk~rRi~-LG-~TQ~dVG~al~~l~g~~~SQttIcRF 50 (75)
T d1e3oc2 7 EELEQFAKTFKQRRIK-LG-FTQGDVGLAMGKLYGNDFSQTTISRF 50 (75)
T ss_dssp HHHHHHHHHHHHHHHH-TT-CCHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-CC-CCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999999987884-36-55899999999871750258899999
No 16
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=26.84 E-value=14 Score=15.09 Aligned_cols=36 Identities=8% Similarity=0.054 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 1268899999998875677779999999999999999998658855570
Q T0619 46 RELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVVDEDL 94 (111)
Q Consensus 46 ~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~~i~~np 94 (111)
-.++..++.+++ |.++.|+++.++.++ ++|+|..+.
T Consensus 26 i~lt~~elA~~l------g~sr~tvsr~l~~l~-------~~g~I~~~~ 61 (73)
T d1zyba1 26 FKVKMDDLARCL------DDTRLNISKTLNELQ-------DNGLIELHR 61 (73)
T ss_dssp EECCHHHHHHHH------TSCHHHHHHHHHHHH-------HTTSCEEET
T ss_pred EECCHHHHHHHH------CCCHHHHHHHHHHHH-------HCCCEEECC
T ss_conf 506999999897------988999999999999-------889899629
No 17
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.55 E-value=19 Score=14.26 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9977799999775201001268899999998875677779999999
Q T0619 28 YRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGE 73 (111)
Q Consensus 28 ~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ 73 (111)
..|..|..-+..+.+. + .+|..|+..-+.-+.+..+|.+||.+-
T Consensus 3 ~Ele~Fa~~fk~rRi~-L-G~TQ~dVG~al~~l~g~~~SQttIcRF 46 (72)
T d1au7a2 3 RALEQFANEFKVRRIK-L-GYTQTNVGEALAAVHGSEFSQTTICRF 46 (72)
T ss_dssp HHHHHHHHHHHHHHHH-H-TCCHHHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-C-CCCHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 8899999999987742-6-862999999999861865550377888
No 18
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=26.36 E-value=19 Score=14.24 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCC
Q ss_conf 9999999977799999775201001268899999998875677779999999999999999998658855570321678
Q T0619 22 SIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVVDEDLPEKVHV 100 (111)
Q Consensus 22 Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~~i~~np~~~i~~ 100 (111)
+.+.|-..+-.+. .+. ..+...+|.+++ |.+++|++..+..|. +.|+|...|..+|.+
T Consensus 4 s~EdYLk~I~~l~---~~~-----~~v~~~~iA~~L------~vs~~SVs~mikrL~-------~~GlV~~~~Y~~i~L 61 (61)
T d2ev0a1 4 SMEDYIEQIYMLI---EEK-----GYARVSDIAEAL------AVHPSSVTKMVQKLD-------KDEYLIYEKYRGLVL 61 (61)
T ss_dssp HHHHHHHHHHHHH---HHH-----SSCCHHHHHHHH------TCCHHHHHHHHHHHH-------HTTSEEC----CCEE
T ss_pred CHHHHHHHHHHHH---HCC-----CCCCHHHHHHHH------CCCCHHHHHHHHHHH-------HCCCEEECCCCCEEC
T ss_conf 2999999999998---358-----975099999995------899515999999998-------889977706777569
No 19
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=25.94 E-value=20 Score=14.19 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHCCCCCCC
Q ss_conf 777999999999999---------999999865885557
Q T0619 64 DVSPATLNGEMQTLK---------NWLEYLARIDVVDED 93 (111)
Q Consensus 64 ~~s~~Ti~~~l~~lr---------~f~~~l~~~~~i~~n 93 (111)
++|.+||..++..+. .++.|+.+.|+++.+
T Consensus 48 ~iS~~TV~~~~~~i~~Kl~~~~~~~lv~~a~~~gl~~~~ 86 (87)
T d1p4wa_ 48 NRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSMTPVD 86 (87)
T ss_dssp TSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTCSSCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 979999999999999984999999999999996899878
No 20
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.38 E-value=20 Score=14.13 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHH-H-HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHC
Q ss_conf 889999999977799-9-99775201001268899999998875677779999999999999999998658855570321
Q T0619 20 DASIKSFRYRLKHFV-E-WAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVVDEDLPEK 97 (111)
Q Consensus 20 ~~Ti~~Y~~~l~~f~-~-f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~~i~~np~~~ 97 (111)
..|.+.|.. +++++ + |.... -..||..++...+.. ... .....++..++||.+.|+|.-+.+..
T Consensus 33 ~~~~~~Yl~-iRN~Il~~w~~np----~~~Lt~~~~~~~l~~---~~~------~d~~li~ri~~FL~~~G~INfGv~~r 98 (102)
T d2dw4a1 33 QQTQKVFLF-IRNRTLQLWLDNP----KIQLTFEATLQQLEA---PYN------SDTVLVHRVHSYLERHGLINFGIYKR 98 (102)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHCT----TBCCCHHHHHHHSCT---TGG------GCHHHHHHHHHHHHHTTSSSCSSCBC
T ss_pred CCCHHHHHH-HHHHHHHHHHHCC----CEEEEHHHHHHHCCC---CCC------CCHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 977899999-9999999998197----856509999966555---555------55999999999999829541176767
Q ss_pred CCC
Q ss_conf 678
Q T0619 98 VHV 100 (111)
Q Consensus 98 i~~ 100 (111)
+++
T Consensus 99 ~~P 101 (102)
T d2dw4a1 99 IKP 101 (102)
T ss_dssp CSC
T ss_pred CCC
T ss_conf 789
No 21
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=23.80 E-value=21 Score=13.94 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 8899999999987303788999999
Q T0619 3 PREARDRYLAHRQTDAADASIKSFR 27 (111)
Q Consensus 3 p~e~ie~yL~~~~~~~s~~Ti~~Y~ 27 (111)
.+|.++.-.+.++.+.||.-++.|.
T Consensus 4 dqewvelmveakeanispeeirkyl 28 (31)
T d1b0nb_ 4 DQEWVELMVEAKEANISPEEIRKYL 28 (31)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 1999999999987479999999988
No 22
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]} SCOP: d1cqta2 d1o4xa2 d1gt0c2 d1octc2 d1hf0a2
Probab=23.64 E-value=22 Score=13.92 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9977799999775201001268899999998875677779999999
Q T0619 28 YRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGE 73 (111)
Q Consensus 28 ~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ 73 (111)
..|..|..-+..+.+. +. +|..|+..-+..+.+..+|.+||.+.
T Consensus 7 ~Ele~FA~~fk~rRI~-LG-~TQ~dVG~al~~l~G~~~SQttIcRF 50 (75)
T d1e3oc2 7 EELEQFAKTFKQRRIK-LG-FTQGDVGLAMGKLYGNDFSQTTISRF 50 (75)
T ss_dssp HHHHHHHHHHHHHHHH-TT-CCHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-CC-CCHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 8899999999886876-38-86778999999762665320566665
No 23
>d2czla1 c.94.1.1 (A:3-272) Hypothetical protein TTHA1568 {Thermus thermophilus [TaxId: 274]}
Probab=22.18 E-value=23 Score=13.74 Aligned_cols=76 Identities=8% Similarity=0.040 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 037889999999977799999775201-------001268899999998-875677779999999999999999998658
Q T0619 17 DAADASIKSFRYRLKHFVEWAEERDIT-------AMRELTGWKLDEYET-FRRGSDVSPATLNGEMQTLKNWLEYLARID 88 (111)
Q Consensus 17 ~~s~~Ti~~Y~~~l~~f~~f~~~~~~~-------~l~~it~~~i~~y~~-~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~ 88 (111)
++.+.........++...++..++.-. .-..++...++.|+. |.++-.+. -=.....+|+.||+++.+.|
T Consensus 182 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Y~n~l~y~--l~~~~~~gL~~F~~~a~~~G 259 (270)
T d2czla1 182 DLGEGLIRALDEAVRRSVAYALAHPEEALDYMRAHAQELSDEVIWAHVHTYVNAFSLD--VGEEGERAVARLFAEAEARG 259 (270)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHSGGGGHHHHHHHCTTSCHHHHHHHHHHHCSHHHHC--CHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEC--CCHHHHHHHHHHHHHHHHCC
T ss_conf 4487899999999998499998689999999999863099899999999998566508--99899999999999999779
Q ss_pred CCCCCC
Q ss_conf 855570
Q T0619 89 VVDEDL 94 (111)
Q Consensus 89 ~i~~np 94 (111)
.++.-|
T Consensus 260 li~~~p 265 (270)
T d2czla1 260 LAAPSP 265 (270)
T ss_dssp SSCCCS
T ss_pred CCCCCC
T ss_conf 999998
No 24
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=21.15 E-value=24 Score=13.61 Aligned_cols=60 Identities=10% Similarity=0.153 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88999999997779999977520100126889999999887567777999999999999999999865885
Q T0619 20 DASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVV 90 (111)
Q Consensus 20 ~~Ti~~Y~~~l~~f~~f~~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~l~~lr~f~~~l~~~~~i 90 (111)
+.+.-.....+..|++||.+.|+....-.+..|+.. ++ . +...+.+|.++-+.+...|.-
T Consensus 63 ~~~~~~~~eNi~~fL~~~~~~gv~~~~~f~~~DL~e------~~--n---~~~V~~~l~~l~~~~~~~~~~ 122 (159)
T d1p2xa_ 63 NELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYE------GK--N---LPKVIYCIHALSYFLSMQDLA 122 (159)
T ss_dssp SSCCTTHHHHHHHHHHHHHHTTCCGGGCCCHHHHSS------CS--C---HHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHC------CC--C---HHHHHHHHHHHHHHHHHCCCC
T ss_conf 961688999999999999985997400476578871------88--8---899999999999999976999
Done!