Query T0620 INPPL1B, Homo Sapiens, 312 residues
Match_columns 312
No_of_seqs 117 out of 1623
Neff 9.6
Searched_HMMs 22458
Date Thu Jul 22 15:12:33 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0620.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0620.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i9z_A Synaptojanin, phosphati 100.0 0 0 411.4 28.8 283 3-312 23-319 (347)
2 2imq_X Salivary nitrophorin; f 100.0 0 0 321.0 23.4 273 2-310 4-282 (282)
3 2j63_A AP-endonuclease; base e 100.0 1E-37 4.6E-42 235.3 15.8 280 3-308 148-466 (467)
4 1hd7_A DNA-(apurinic or apyrim 100.0 2.2E-32 9.9E-37 204.3 17.5 256 6-308 61-318 (318)
5 3g91_A MTH0212, exodeoxyribonu 100.0 5E-29 2.2E-33 184.9 17.8 256 4-308 1-257 (265)
6 2o3h_A DNA-(apurinic or apyrim 99.9 3.8E-26 1.7E-30 168.2 14.7 256 5-308 27-285 (285)
7 1ako_A Exonuclease III; AP-end 99.9 5.8E-27 2.6E-31 172.9 10.2 254 8-307 2-267 (268)
8 2jc4_A Exodeoxyribonuclease II 99.9 1E-23 4.6E-28 154.1 15.4 249 8-308 2-256 (256)
9 2ddr_A Sphingomyelin phosphodi 99.9 4.6E-23 2.1E-27 150.3 15.8 179 4-195 7-202 (306)
10 1vyb_A ORF2 contains A reverse 99.9 5.5E-23 2.5E-27 149.9 14.2 232 6-307 7-238 (238)
11 2jc5_A Exodeoxyribonuclease; h 99.9 1.6E-22 7E-27 147.2 14.1 257 4-309 1-257 (259)
12 1zwx_A SMCL, sphingomyelinase- 99.9 1.8E-21 8.1E-26 141.1 17.4 180 1-194 7-201 (301)
13 3g6s_A Putative endonuclease/e 99.9 3.7E-20 1.6E-24 133.5 19.7 247 6-310 3-262 (267)
14 1wdu_A TRAS1 ORF2P; four-layer 99.9 9.9E-20 4.4E-24 131.0 18.4 224 7-309 20-244 (245)
15 2voa_A AF_EXO, XTHA, exodeoxyr 99.8 1.1E-19 4.7E-24 130.8 13.7 248 8-308 3-257 (257)
16 3l1w_A Uncharacterized protein 99.8 1.3E-17 5.7E-22 118.7 18.0 159 7-192 1-170 (257)
17 2a40_B Deoxyribonuclease-1; WA 99.7 1.1E-16 4.7E-21 113.4 11.3 164 7-193 1-173 (260)
18 2ei9_A Non-LTR retrotransposon 99.7 1.5E-15 6.6E-20 106.8 16.9 213 7-309 8-220 (240)
19 2f1n_A CDT B, cytolethal diste 99.7 2.7E-17 1.2E-21 116.9 7.7 157 2-192 13-189 (262)
20 1sr4_B CDT B, cytolethal diste 99.5 1.5E-13 6.7E-18 95.1 12.7 162 2-192 2-181 (261)
No 1
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=0 Score=411.43 Aligned_cols=283 Identities=29% Similarity=0.545 Sum_probs=252.8
Q ss_pred CEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECC-CCC-----------HHHHHHHHHHHH
Q ss_conf 73799999861577277012345542321010013452057898899972147-877-----------789999999987
Q T0620 3 DMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQEN-SVG-----------DREWLDLLRGGL 70 (312)
Q Consensus 3 ~~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~-~~~-----------~~~~~~~~~~~l 70 (312)
..++||++|||+|+-.|+..|..||.+.. ...+|||||||||+ .+. ...|...+...|
T Consensus 23 ~~~~~~~~twn~g~~~~~~~l~~wl~p~~----------~~~~Dl~aVg~QE~v~lsa~~v~~~~~~~~~~w~saV~~~L 92 (347)
T 1i9z_A 23 KNVKIFVASYNLNGCSATTKLENWLFPEN----------TPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLL 92 (347)
T ss_dssp EEEEEEEEEEECTTCCCCSCCHHHHSCSS----------SCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCHHHHHHHCCCC----------CCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 55599998623668888677898748788----------88776799862444442234430578853278999999876
Q ss_pred HHCC--CCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCC
Q ss_conf 5317--85089983147540267888525320112445513213426875668783899999848289999710477874
Q T0620 71 KELT--DLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNE 148 (312)
Q Consensus 71 ~~~~--~~~y~~~~~~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~ 148 (312)
+..- ...|..+...+++++.++||+|.++.+.++.+.+.+++||++|.++|||++++++.+++..++|||+||.||..
T Consensus 93 ~~~~~~~~gy~~V~~~~L~gi~l~VFvr~s~~~~v~~V~t~tvatG~ggvlGNKGav~V~~~~~~t~lcFV~~HLAA~~~ 172 (347)
T 1i9z_A 93 NGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYT 172 (347)
T ss_dssp HHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSS
T ss_pred HCCCCCCCCEEEEEEEEEEEEEEEEEEEHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECHHCCCH
T ss_conf 40246787537986412712899999825533234420332465345531146763699999889479999860411661
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 01467899999998730003444556653004644775456545467736899873024601466766567998625411
Q T0620 149 KTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVF 228 (312)
Q Consensus 149 ~~~~R~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 228 (312)
+..+|+.++..|+..+++... +....++++||+||||||++++..+....++.++|+.|++.||++.++..+..|
T Consensus 173 ~~~~RN~d~~eI~~~~r~~~~-----~~~~~~d~~~~~GDLNYR~~~~~~ev~~~i~~~~~~~L~~~DQL~re~~~g~vf 247 (347)
T 1i9z_A 173 NYDERDHDYRTIASGLRFRRG-----RSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVF 247 (347)
T ss_dssp CHHHHHHHHHHHHHHCCCGGG-----CCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHHCCCC-----CCCCCCCEEEEECCCCCEECCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCHH
T ss_conf 554542539999997412588-----653347569995353303307599999998515599887511899998658241
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 43324888536624764878886534345677666677723014666417544037874000277676898557999977
Q T0620 229 LRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEV 308 (312)
Q Consensus 229 ~~~~e~~i~F~ptyk~~~~~~~~~t~~~~~~~~~~~r~p~w~DRIly~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~l 308 (312)
.+|.|++|+|+|||||.+|++.+++ +.++|+|||||||||.+ .+.+.+|.+.+ +..|||+||+|+|++
T Consensus 248 ~gF~Eg~i~F~PTYK~~~Gt~~y~~-------~~KkRvPSwtDRILwrs----~~~~~sy~sv~-l~tSDHkPV~A~Fe~ 315 (347)
T 1i9z_A 248 PFFSELPITFPPTYKFDIGTDIYDT-------SDKHRVPAWTDRILYRG----ELVPHSYQSVP-LYYSDHRPIYATYEA 315 (347)
T ss_dssp TTCBCCCCCSCCCBCBCTTSSCBCC-------STTCCCCBCCEEEEEES----SCEEEEEEECC-CCSSSBCCEEEEEEE
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCC-------HHHCCCCCHHHHEEEEC----CCCCCCCCCCC-EECCCCCCEEEEEEE
T ss_conf 4870577898884552489865450-------32037963422145312----43234455554-023787675557763
Q ss_pred EECC
Q ss_conf 7609
Q T0620 309 GVTS 312 (312)
Q Consensus 309 ~v~~ 312 (312)
+|.+
T Consensus 316 ~~~~ 319 (347)
T 1i9z_A 316 NIVK 319 (347)
T ss_dssp EEEE
T ss_pred CCCC
T ss_conf 2431
No 2
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=0 Score=320.98 Aligned_cols=273 Identities=21% Similarity=0.366 Sum_probs=215.4
Q ss_pred CCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHH------HHHHHHHHHHHCCC
Q ss_conf 973799999861577277012345542321010013452057898899972147877789------99999998753178
Q T0620 2 PDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDRE------WLDLLRGGLKELTD 75 (312)
Q Consensus 2 p~~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~------~~~~~~~~l~~~~~ 75 (312)
|.+++|+|+||||||++++.++..|+ .++...+|||+||||||++..... +....... .+.
T Consensus 4 ~~~~~~~i~TWNVn~~~~~~~~~~~~----------~~~~~~~pDI~Vi~LQE~~~~~~~~~~~~~~~~~~~~~---~~~ 70 (282)
T 2imq_X 4 PAQLSVHTVSWNSGHERAPTNLEELL----------GLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSL---LTS 70 (282)
T ss_dssp CSEEEEEEEEEEEETCCCCSCCHHHH----------TCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHH---HHH
T ss_pred CCEEEEEEEEECCCCCCCCCCHHHHH----------CCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHH---HCC
T ss_conf 97434999988789980871989885----------73546797989999881785611462248999999997---077
Q ss_pred CEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHH
Q ss_conf 50899831475402678885253201124455132134268756687838999998482899997104778740146789
Q T0620 76 LDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQ 155 (312)
Q Consensus 76 ~~y~~~~~~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~ 155 (312)
..|..++..+.+|+|+++|+|.++.... ........|..+..+++|++.+++.+++..+.++|+|++++.....+|..
T Consensus 71 ~~~~~v~~~~~~~~g~~i~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~in~hl~~~~~~~~~~~~ 148 (282)
T 2imq_X 71 KGYTKLKNTITETMGLTVYCLEKHLDQN--TLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKY 148 (282)
T ss_dssp TTEEEEEEEECSSEEEEEEEEGGGCCTT--TCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTSSSS
T ss_pred CCEEEEEEEEECCCEEEEEECCCCCCCC--CEEEEEEECCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 8368988754127588999755324566--14555685357755677569999998999999837876410367888889
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999987300034445566530046447754565454677368998730246014667665679986254114332488
Q T0620 156 NYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEE 235 (312)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~ 235 (312)
...............+.++++||||++................+..++.+|+.... .....+.+|.|.+
T Consensus 149 ----------~~~~~~~~~~~~~~~~~vi~~GD~N~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~e~~ 217 (282)
T 2imq_X 149 ----------AYDTRLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKA-KEQKLFDGWTEPQ 217 (282)
T ss_dssp ----------SCCGGGCTTSSSSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHH-HHTTSSTTCBCCC
T ss_pred ----------HHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCCCCCCCCC
T ss_conf ----------99875443311564450123368530235430355776503577778887999874-2456201638587
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEE
Q ss_conf 853662476487888653434567766667772301466641754403787400027767689855799997776
Q T0620 236 ISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGV 310 (312)
Q Consensus 236 i~F~ptyk~~~~~~~~~t~~~~~~~~~~~r~p~w~DRIly~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~l~v 310 (312)
..|.|+|++...... +...|.|+|||||||.......+++.+|++++++.+|||+||+|+|+|+|
T Consensus 218 ~~f~p~~~~~~~~~~----------~~~~R~~~~~D~Il~~~~~~~~i~~~~y~~~~~~~~SDH~PV~a~F~l~~ 282 (282)
T 2imq_X 218 VTFKPTYKFKPNTDE----------YDLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp CCSCCCBCBCTTSSC----------BCTTSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred CCCCCCCCCCCCCCC----------CCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHEEEEEEEC
T ss_conf 465998777786576----------78863885664999999757874797988888989887852399999989
No 3
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=1e-37 Score=235.28 Aligned_cols=280 Identities=15% Similarity=0.112 Sum_probs=159.7
Q ss_pred CEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCC-EEEEE
Q ss_conf 73799999861577277012345542321010013452057898899972147877789999999987531785-08998
Q T0620 3 DMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDL-DYRPI 81 (312)
Q Consensus 3 ~~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~-~y~~~ 81 (312)
+|+| |+||||||++... ......+..++...+||| ||||||++..+.+... ..+....++ .|...
T Consensus 148 ~mmK--IiSWNVNGLR~~~--------kk~~~~l~~~L~~~~pDI--IcLQEtK~~~~~~~~~--~~~~~~~gY~~~~~~ 213 (467)
T 2j63_A 148 RMYK--FITWNVAGLRGLL--------KKNASALRAFMEAEKPDV--LCLQETKLNVDEADAN--ATLGVVDGYSFVDHP 213 (467)
T ss_dssp TEEE--EEEEECSCHHHHH--------HHCTTHHHHHHHHHCCSE--EEEECCCCCTTCHHHH--HTSSCCTTEEEEEEC
T ss_pred CEEE--EEEEEECCHHHHH--------HCCHHHHHHHHHHCCCCE--EEEEEECCCHHHCCHH--HHHHCCCCCCEEEEC
T ss_conf 3579--9999324556654--------215389999998559998--9998631683446977--787424885068733
Q ss_pred ECCCCCEEEEEEEECCCCCCCCCCCCC---------------CCEEECCCCCCCCCCCEEEEEEE-------CCEEEEEE
Q ss_conf 314754026788852532011244551---------------32134268756687838999998-------48289999
Q T0620 82 AMQSLWNIKVAVLVKPEHENRISHVST---------------SSVKTGIANTLGNKGAVGVSFMF-------NGTSFGFV 139 (312)
Q Consensus 82 ~~~~~~~~gv~vf~r~~~~~~i~~~~~---------------~~~~~g~~~~~~~kG~v~i~~~~-------~~~~i~~i 139 (312)
...+.++.|+++|+|+++......... ........+..+.+|++...... ....+.++
T Consensus 214 ~~~~kgysGVAi~sr~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~egR~i~~~~~~~~~~~~~~~~~~l~ 293 (467)
T 2j63_A 214 CAFKRGYSGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALV 293 (467)
T ss_dssp CSSSTTSCCEEEEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCCEEEEEECSSCCC----CCEEEE
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEE
T ss_conf 45654203089998377543343210112544567665443445334565556655532688840454333555888999
Q ss_pred EEECCCCCCCHHH---HHHHHH----HHHHHHCCCHH------HHHHHHHHHCCCCEEEECCCCCCCCCCHHH-HHHHHC
Q ss_conf 7104778740146---789999----99987300034------445566530046447754565454677368-998730
Q T0620 140 NCHLTSGNEKTAR---RNQNYL----DILRLLSLGDR------QLNAFDISLRFTHLFWFGDLNYRLDMDIQE-ILNYIS 205 (312)
Q Consensus 140 n~hl~a~~~~~~~---R~~~~~----~i~~~~~~~~~------~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~-~~~~~~ 205 (312)
|+|+|++....++ |...+. .+++.+..... ............++|+|||||......+.. ......
T Consensus 294 nvy~Pn~~~~~e~~~~r~~~~d~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~vIl~GDfNv~~~~~D~~~~~~~~~ 373 (467)
T 2j63_A 294 NTYVANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKS 373 (467)
T ss_dssp EEECCCCCTTSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHCCHHHHH
T ss_conf 97068887653026777899999999999999876643101210344554047876688445513551221111110220
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEE-ECCCCCE
Q ss_conf 246014667665679986254114332488853662476487-88865343456776666777230146664-1754403
Q T0620 206 RKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERG-SRDTYAWHKQKPTGVRTNVPSWCDRILWK-SYPETHI 283 (312)
Q Consensus 206 ~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~ptyk~~~~-~~~~~t~~~~~~~~~~~r~p~w~DRIly~-~~~~~~~ 283 (312)
+....++.+. ++.+|..+.+ ...|.|+||+.++ ..+.||||+++.+++.+|. || ||||+ .++.+..
T Consensus 374 ~~~~~g~~~~--------ER~~~~~~l~-~~glvD~fR~~hP~~~~~YT~W~~r~~~r~~N~-G~--RIDyilvS~~l~~ 441 (467)
T 2j63_A 374 MQECSGFAPE--------ERMSFRETMQ-RTNSVDIFRQLYPQAGPVYSFWSQRINGRPRNL-GW--RLDYFVVSSRLAS 441 (467)
T ss_dssp HTTSTTSCHH--------HHHHHHHHHH-HTTEEEHHHHHCTTBCSCCSBCCTTTTTTTTTC-CB--CCEEEEEEGGGGG
T ss_pred CCCCCCCCHH--------HHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CC--CCEEEEECHHHHH
T ss_conf 2577777989--------9999999997-779899221127998996656278778453798-67--0168996779981
Q ss_pred EEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 7874000277676898557999977
Q T0620 284 ICNSYGCTDDIVTSDHSPVFGTFEV 308 (312)
Q Consensus 284 ~~~~y~~~~~~~~SDH~PV~a~f~l 308 (312)
++.++.++++.++||||||+++++.
T Consensus 442 ~V~~~~I~~~~~gSDH~PV~l~L~~ 466 (467)
T 2j63_A 442 YVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp GEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred HCCEEEECCCCCCCCCCCEEEEEEC
T ss_conf 2228887689998880465999867
No 4
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 2isi_A
Probab=100.00 E-value=2.2e-32 Score=204.33 Aligned_cols=256 Identities=12% Similarity=0.041 Sum_probs=144.5
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 99999861577277012345542321010013452057898899972147877789999999987531785089983147
Q T0620 6 SVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQS 85 (312)
Q Consensus 6 ~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~ 85 (312)
++.|+||||||++.. .++.+.+++...+||| |||||+++....++..+...+ .....|.......
T Consensus 61 ~mkiiSwNVnGir~~-----------~~k~~~~~Ik~~~pDI--i~LQE~k~~~~~~~~~~~~~~--g~~~~y~~~~~~~ 125 (318)
T 1hd7_A 61 TLKICSWNVDGLRAW-----------IKKKGLDWVKEEAPDI--LCLQETKCSENKLPAELQELP--GLSHQYWSAPSDK 125 (318)
T ss_dssp CEEEEEEECSSHHHH-----------HHTTHHHHHHHHCCSE--EEEECCCCCC-------------CCCEEEEECC---
T ss_pred CEEEEEEECCCHHHH-----------HHCCHHHHHHHCCCCE--EEEEECCCCHHHCCHHHHHHC--CCCCEEEEEECCC
T ss_conf 779999983898985-----------5547999997679958--999856469276898889607--9973499986687
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 54026788852532011244551321342687566878389999984828999971047787401467899999998730
Q T0620 86 LWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLS 165 (312)
Q Consensus 86 ~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i~~~~~ 165 (312)
.++.|+++|+|.++....... .........+.+.....+..+ ++++.++......+... ......
T Consensus 126 ~~~~Gvai~~k~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~--~~~~~~-- 190 (318)
T 1hd7_A 126 EGYSGVGLLSRQCPLKVSYGI---------GDEEHDQEGRVIVAEFDSFVL--VTAYVPNAGRGLVRLEY--RQRWDE-- 190 (318)
T ss_dssp --CCCEEEEESSCCSEEEESC---------SCGGGSSSSCEEEEECSSCEE--EEEECCCCCGGGTTHHH--HHHHHH--
T ss_pred CCCCCEEEEEECCCCCCCCCC---------CCCCCCHHHEEEEEEECCEEE--EEEECCCCCCCCHHHHH--HHHHHH--
T ss_conf 675561379712510122221---------345545002158999588799--99957776676178899--999888--
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00344455665300464477545654546773689987302460146676656799862541143324888536624764
Q T0620 166 LGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYE 245 (312)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~ptyk~~ 245 (312)
.............+++++||||.......................+.+. |..+.+ ..+|.|+||..
T Consensus 191 ---~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~~~~~~~~~~~~e~~~----------l~~~~~-~~gl~D~~r~~ 256 (318)
T 1hd7_A 191 ---AFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQG----------FGELLQ-AVPLADSFRHL 256 (318)
T ss_dssp ---HHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHHHHH----------HHHHHH-HTTCEEHHHHH
T ss_pred ---HHHHHHHHHHCCCCEEECCCCCCCCCHHHHCCHHHCCCCCCCCHHHHHH----------HHHHHH-HCCCCCCCHHH
T ss_conf ---9999988862277537506634465165522555503554456277787----------888987-26884434411
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-ECCCCCEEEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf -8788865343456776666777230146664-17544037874000277676898557999977
Q T0620 246 -RGSRDTYAWHKQKPTGVRTNVPSWCDRILWK-SYPETHIICNSYGCTDDIVTSDHSPVFGTFEV 308 (312)
Q Consensus 246 -~~~~~~~t~~~~~~~~~~~r~p~w~DRIly~-~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~l 308 (312)
++..+.||||+++.+++.++. || ||||+ .++.....+.++.+.....+|||+||.++++|
T Consensus 257 ~p~~~~~yT~w~~~~~~~~~~~-G~--RIDyIlvS~~l~~~v~~~~i~~~~~~SDH~PV~v~L~l 318 (318)
T 1hd7_A 257 YPNTPYAYTFWTYMMNARSKNV-GW--RLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318 (318)
T ss_dssp CTTCTTCCSBCCSGGGHHHHTC-CB--CCEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCC-CE--EEEEEEECHHHHHHEEEEEECCCCCCCCCCCEEEEEEC
T ss_conf 7999984020365568651589-87--66899957378622168998889999980168999969
No 5
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease, 2'-desoxyuridine endonuclease; HET: PG4; 1.23A {Methanothermobacterthermautotrophicus} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.97 E-value=5e-29 Score=184.89 Aligned_cols=256 Identities=15% Similarity=0.080 Sum_probs=148.3
Q ss_pred EEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 37999998615772770123455423210100134520578988999721478777899999999875317850899831
Q T0620 4 MISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAM 83 (312)
Q Consensus 4 ~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~ 83 (312)
|.++.|+||||||++. ...+.+.+++...+||| |||||++.....+... +....+..+.....
T Consensus 1 ~~~lki~twNv~g~~~-----------~~~~~~~~~i~~~~~DI--i~lQEv~~~~~~~~~~----~~~~~~~~~~~~~~ 63 (265)
T 3g91_A 1 MAVLKIISWNVNGLRA-----------VHRKGFLKWFMEEKPDI--LCLQEIKAAPEQLPRK----LRHVEGYRSFFTPA 63 (265)
T ss_dssp -CEEEEEEEECSCHHH-----------HHHHTHHHHHHHHCCSE--EEEECCCSCGGGSCHH----HHCCTTCEEEEECB
T ss_pred CCCCEEEEEECCCHHH-----------HHHHHHHHHHHHCCCCE--EEEECCCCCCCCCCHH----HHHCCCCEEEEEEC
T ss_conf 9861999999397145-----------56758999998579969--9999240761100477----65216850567304
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 47540267888525320112445513213426875668783899999848289999710477874014678999999987
Q T0620 84 QSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRL 163 (312)
Q Consensus 84 ~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i~~~ 163 (312)
...++.|+++|+|.++.......... .....+.+ +. .....+.++++|++++..+.+.+......+...
T Consensus 64 ~~~~~~G~ailsr~~~~~~~~~~~~~--------~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 3g91_A 64 ERKGYSGVAMYTKVPPSSLREGFGVE--------RFDTEGRI-QI--ADFDDFLLYNIYFPNGAMSEERLKYKLEFYDAF 132 (265)
T ss_dssp SSTTSCCEEEEESSCCSEEECCCSCH--------HHHSBSCE-EE--EECSSCEEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCEEEECCCCC--------CCCCCEEE-EE--EECCCEEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 78874359999952650157625887--------65653389-99--971999999999668767447789999999999
Q ss_pred HCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHH-HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 300034445566530046447754565454677368-9987302460146676656799862541143324888536624
Q T0620 164 LSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQE-ILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTY 242 (312)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~-~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~pty 242 (312)
. ...........++|++||||......+.. .......... .....+.+.. +. ...+.+++
T Consensus 133 ~------~~~~~~~~~~~~~il~GDfN~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~----------~~--~~g~~d~~ 193 (265)
T 3g91_A 133 L------EDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGF-LPVERAWIDK----------FI--ENGYVDTF 193 (265)
T ss_dssp H------HHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTS-CHHHHHHHHH----------HH--HTTEEETH
T ss_pred H------HHHHHHHCCCCCEEEECCCCCCCCHHHHCCHHHHCCCCCC-CHHHHHHHHH----------HH--HCCCEEEE
T ss_conf 9------9999865158988996630247756664276664688666-8799999998----------86--33864021
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 764878886534345677666677723014666417544037874000277676898557999977
Q T0620 243 RYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEV 308 (312)
Q Consensus 243 k~~~~~~~~~t~~~~~~~~~~~r~p~w~DRIly~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~l 308 (312)
+...+....||+|.+..+.+.++.++..|+|++ ++....++..+.+.++..+|||+||+++|+|
T Consensus 194 ~~~~~~~~~~T~~~~~~~~~~~~~~~rID~Il~--s~~~~~~~~~~~i~~~~~~SDH~PV~~~l~l 257 (265)
T 3g91_A 194 RMFNSDPGQYTWWSYRTRARERNVGWRLDYFFV--NEEFKGKVKRSWILSDVMGSDHCPIGLEIEL 257 (265)
T ss_dssp HHHCCCSCCCSBCCSSTTTTTTTCCBCCEEEEE--EGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred HHCCCCCCCEEECCCCCCCCCCCCCEEEEEEEE--CCHHHHHCCEEEECCCCCCCCCCCEEEEEEE
T ss_conf 102689997022078788655799745899998--4379533139999569988999017999997
No 6
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.94 E-value=3.8e-26 Score=168.20 Aligned_cols=256 Identities=11% Similarity=-0.008 Sum_probs=134.1
Q ss_pred EEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEE-EEEC
Q ss_conf 799999861577277012345542321010013452057898899972147877789999999987531785089-9831
Q T0620 5 ISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYR-PIAM 83 (312)
Q Consensus 5 l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~-~~~~ 83 (312)
-++.|+||||||++. ..++.+.+++...+||| |||||+++...+....+.. ..++..+. ....
T Consensus 27 ~~mkiiSwNvnGl~~-----------~~~~~~~~~i~~~~pDI--i~LQEv~~~~~~~~~~~~~---~~~~~~~~~~~~~ 90 (285)
T 2o3h_A 27 ATLKIASWNVDGLRA-----------WIKKKGLDWVKEEAPDI--LCLQETKCSENKLPAELQE---LPGLSHQYWSAPS 90 (285)
T ss_dssp CCEEEEEEECSSHHH-----------HHHTTHHHHHHHHCCSE--EEEECCCCCTTSCCGGGGG---CGGGCEEEEECBC
T ss_pred CCEEEEEEECCCHHH-----------HHHCCHHHHHHHCCCCE--EEEEEEECCHHHCCHHHHH---CCCCCEEEEEECC
T ss_conf 867999998388777-----------32345899997579988--9998643782448886861---5787346775105
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 47540267888525320112445513213426875668783899999848289999710477874014678999999987
Q T0620 84 QSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRL 163 (312)
Q Consensus 84 ~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i~~~ 163 (312)
...+..+.+++++........... .......+ ...........+..++++.++..............
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 157 (285)
T 2o3h_A 91 DKEGYSGVGLLSRQCPLKVSYGIG--------DEEHDQEG-RVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDE---- 157 (285)
T ss_dssp --CCSCCEEEEESSCCSEEEESCS--------CGGGSSBC-CEEEEECSSCEEEEEECCCCCGGGTTHHHHHHHHH----
T ss_pred CCCCCCCCCEEECCCCEEEEECCC--------CCCCCCCC-EEEEEEECCEEEEEEEECCCCCCCCCHHHHHHHHH----
T ss_conf 666554421142368714674578--------77444412-07999852606899983687665300566543022----
Q ss_pred HCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 30003444556653004644775456545467736899873024601466766567998625411433248885366247
Q T0620 164 LSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYR 243 (312)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~ptyk 243 (312)
..............++++||||.......................+...+..... ...+.++|+
T Consensus 158 -----~~~~~~~~~~~~~~~i~~gd~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~~r 221 (285)
T 2o3h_A 158 -----AFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQ-----------AVPLADSFR 221 (285)
T ss_dssp -----HHHHHHHHHHTTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHHHHHHHHHHH-----------HTTCEEHHH
T ss_pred -----HHHHHHHHCCCCCEEEECCCCCCCCCHHHCCCHHHHHHHCCCCCHHHHHHHHHHH-----------CCCCCCCEE
T ss_conf -----1110112204552389604302387343214756612101367288887999984-----------137752102
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-ECCCCCEEEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf 64-8788865343456776666777230146664-17544037874000277676898557999977
Q T0620 244 YE-RGSRDTYAWHKQKPTGVRTNVPSWCDRILWK-SYPETHIICNSYGCTDDIVTSDHSPVFGTFEV 308 (312)
Q Consensus 244 ~~-~~~~~~~t~~~~~~~~~~~r~p~w~DRIly~-~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~l 308 (312)
.. +.....||||+++..++.++.+. ||||. +++....++.++.+..+..+|||+||.++++|
T Consensus 222 ~~~p~~~~~yT~~~~~~~~~~~~~g~---RIDyi~vs~~l~~~v~~~~v~~~~~~SDH~PV~~eL~l 285 (285)
T 2o3h_A 222 HLYPNTPYAYTFWTYMMNARSKNVGW---RLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 285 (285)
T ss_dssp HHCTTCCSCCSBCCSSTTHHHHTCCB---CCEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEECC
T ss_pred EECCCCCCCEEECCCCCCCCCCCCCE---EEEEEEECHHHHHHEEEEEECCCCCCCCCCCEEEEEEC
T ss_conf 33389998346157778855379856---65899988489712247998789999982258999979
No 7
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli K12} SCOP: d.151.1.1
Probab=99.94 E-value=5.8e-27 Score=172.94 Aligned_cols=254 Identities=16% Similarity=0.132 Sum_probs=133.6
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 99986157727701234554232101001345205789889997214787778999999998753178508998314754
Q T0620 8 FIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLW 87 (312)
Q Consensus 8 ~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~~~ 87 (312)
.|+||||||++.. .+.+.+++...+||| |||||+++.+..+... .+...++ .+.... ...
T Consensus 2 kiiSwNVnGlr~r------------~~~~~~~i~~~~pDI--icLQE~k~~~~~~~~~---~~~~~gy-~~~~~~--~~~ 61 (268)
T 1ako_A 2 KFVSFNINGLRAR------------PHQLEAIVEKHQPDV--IGLQETKVHDDMFPLE---EVAKLGY-NVFYHG--QKG 61 (268)
T ss_dssp EEEEEECSCGGGC------------HHHHHHHHHHHCCSE--EEEECCCCCGGGCCHH---HHHHTTC-EEEEEE--ETT
T ss_pred EEEEEEEHHHHHH------------HHHHHHHHHHCCCCE--EEEEECCCCCCCCCHH---HHHHCCC-EEEECC--CCC
T ss_conf 8999970029877------------988999997689988--9999552790008977---8875695-476337--666
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 02678885253201124455132134268756687838999998482899997104778740146789999999873000
Q T0620 88 NIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLG 167 (312)
Q Consensus 88 ~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i~~~~~~~ 167 (312)
..|++++++..+............. ................+.++++|.+.+................ .
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~----~ 130 (268)
T 1ako_A 62 HYGVALLTKETPIAVRRGFPGDDEE-------AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFY----Q 130 (268)
T ss_dssp EEEEEEEESSCCSEEEESSTTCCHH-------HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHH----H
T ss_pred CCCCEEEECCCCHHHCCCCCCCCCC-------CCCCEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH----H
T ss_conf 7762365113532210377633322-------2231233211013587678865316886410446667888999----9
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCHH-----HHH--HHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 3444556653004644775456545467736-----899--873024601466766567998625411433248885366
Q T0620 168 DRQLNAFDISLRFTHLFWFGDLNYRLDMDIQ-----EIL--NYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPP 240 (312)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~-----~~~--~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~p 240 (312)
..............+++++||||......+. ... .......+.. .....+..+.+ ..+.|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~gd~n~~~~~~D~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~D 197 (268)
T 1ako_A 131 NLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLP-----------EEREWMDRLMS--WGLVD 197 (268)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCH-----------HHHHHHHHHHH--TTEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHCCHHHCCHHHCCCCCCCCCH-----------HHHHHHHHHHH--CCCCC
T ss_conf 999999998845896201132431841765336344020101357545788-----------99999999972--89942
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEC----CCCCCCCCCCEEEEEE
Q ss_conf 247648-788865343456776666777230146664175440378740002----7767689855799997
Q T0620 241 TYRYER-GSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCT----DDIVTSDHSPVFGTFE 307 (312)
Q Consensus 241 tyk~~~-~~~~~~t~~~~~~~~~~~r~p~w~DRIly~~~~~~~~~~~~y~~~----~~~~~SDH~PV~a~f~ 307 (312)
+||... ....++|||+++...+.++.+.++|+|+ ++++...++.++.+. +...+|||+||+|+|+
T Consensus 198 ~~r~~~~~~~~~~t~~~~~~~~~~~~~g~RIDyi~--~S~~l~~~~~~~~i~~~~~~~~~~SDH~PV~~~lr 267 (268)
T 1ako_A 198 TFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLL--ASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp HHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEE--EEHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred EEHHHCCCCCCCCEECCCCCCCCCCCCCEEEEEEE--ECHHHHHHCEEEEEEHHHCCCCCCCCCEEEEEEEE
T ss_conf 00221688887631146657763279978868999--67789724038888566318999998245799997
No 8
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.91 E-value=1e-23 Score=154.08 Aligned_cols=249 Identities=14% Similarity=0.114 Sum_probs=132.3
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 99986157727701234554232101001345205789889997214787778999999998753178508998314754
Q T0620 8 FIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLW 87 (312)
Q Consensus 8 ~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~~~ 87 (312)
.|+||||||++. +.+.+.+++...+||| |||||+++.+..++.. .+...+. .+.... ...
T Consensus 2 Ki~S~NvnG~r~------------r~~~i~~~i~~~~~DI--i~LQE~k~~~~~~~~~---~~~~~~~-~~~~~~--~~~ 61 (256)
T 2jc4_A 2 KITTWNVNSLNV------------RLPQVQNLLADNPPDI--LVLQELKLDQDKFPAA---ALQMMGW-HCVWSG--QKT 61 (256)
T ss_dssp EEEEEECSCHHH------------HHHHHHHHHHSSCCSE--EEEECCCSCGGGSCHH---HHHTTTC-EEEEEC--CSS
T ss_pred EEEEEEECCHHH------------HHHHHHHHHHHCCCCE--EEEEEEECCHHCCCHH---HHHCCCC-EEEECC--CCC
T ss_conf 899998485999------------9999999998589979--9999677571008977---8600465-045415--566
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 02678885253201124455132134268756687838999998482899997104778740146789999999873000
Q T0620 88 NIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLG 167 (312)
Q Consensus 88 ~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i~~~~~~~ 167 (312)
..+.++.++..+.... .+......+...+.+.+...+ +.++++|+|+.......+....... ..
T Consensus 62 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 125 (256)
T 2jc4_A 62 YNGVAIVSRSVPQDVH---------FGLPALPDDPQRRVIAATVSG--VRVINVYCVNGEALDSPKFKYKEQW-----FA 125 (256)
T ss_dssp SCCEEEEESSCCEEEE---------ESCTTSTTCCSCCEEEEEETT--EEEEEEECCCCCSTTSHHHHHHHHH-----HH
T ss_pred CCCCEEEEEECCCCCC---------CCCCCCCCCCCEEEEEEEECC--EEEEEEECCCCCCCCHHHHHHHHHH-----HH
T ss_conf 5672057630663100---------146888778660699996199--8999972588876300556788898-----99
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHH-HHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3444556653004644775456545467736899-873024601466766567998625411433248885366247648
Q T0620 168 DRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEIL-NYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYER 246 (312)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~ptyk~~~ 246 (312)
...............++++||||........... .......+... ..... ..+. ...+.++|+...
T Consensus 126 ~~~~~~~~~~~~~~~~i~~gd~n~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~--~~~~~D~~r~~~ 192 (256)
T 2jc4_A 126 ALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSV---ERQWF--------QNLL--DLGLTDSLRQVH 192 (256)
T ss_dssp HHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGGTTCTTSCHH---HHHHH--------HHHH--TTTCEEHHHHHC
T ss_pred HHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHCCHHHHCCCCCCCHH---HHHHH--------HHHH--HCCCEEEEEEEC
T ss_conf 9999999862136653303443268627663271430023335789---99998--------8765--257368763305
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-ECCCCCEEEEEEEECC----CCCCCCCCCEEEEEEE
Q ss_conf 788865343456776666777230146664-1754403787400027----7676898557999977
Q T0620 247 GSRDTYAWHKQKPTGVRTNVPSWCDRILWK-SYPETHIICNSYGCTD----DIVTSDHSPVFGTFEV 308 (312)
Q Consensus 247 ~~~~~~t~~~~~~~~~~~r~p~w~DRIly~-~~~~~~~~~~~y~~~~----~~~~SDH~PV~a~f~l 308 (312)
+....++||++..+.+.++.+ + ||||+ ++++...++.++.+.. ...+|||+||.++|+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~g-~--RIDyi~~S~~~~~~v~~~~v~~~~~~~~~~SDH~PV~~~~~~ 256 (256)
T 2jc4_A 193 PEGAFYTWFDYRGAMFQRKLG-L--RIDHILVSPAMAAALKDVRVDLETRALERPSDHAPVTAEFDW 256 (256)
T ss_dssp CSSCCCCBCCTTTTHHHHTCC-B--CCEEEEECHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEECC
T ss_pred CCCCCEEECCCCCCCCCCCCC-E--EEEEEEECHHHHHHCEEEEEEECCCCCCCCCCCCCEEEEEEC
T ss_conf 899863732787885425897-0--569999786997233399997224579999983168999969
No 9
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.91 E-value=4.6e-23 Score=150.32 Aligned_cols=179 Identities=15% Similarity=0.023 Sum_probs=96.5
Q ss_pred EEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCC-------
Q ss_conf 3799999861577277012345542321010013452057898899972147877789999999987531785-------
Q T0620 4 MISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDL------- 76 (312)
Q Consensus 4 ~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~------- 76 (312)
.-++.|+||||...+... .+......+.+.+...+...+||| |||||+..... .+.+...|......
T Consensus 7 ~~~lkv~t~Ni~~~~~~~--~~~~~~~~r~~~i~~~i~~~~~DI--I~LQEV~~~~~--~~~l~~~l~~~~~~~~~~~~~ 80 (306)
T 2ddr_A 7 NDTLKVMTHNVYMLSTNL--YPNWGQTERADLIGAADYIKNQDV--VILNEVFDNSA--SDRLLGNLKKEYPNQTAVLGR 80 (306)
T ss_dssp CCEEEEEEEEEEECCTTT--CTTSCHHHHHHHHHHCSTTCSCSE--EEEEEECCHHH--HHHHHHHHTTTCCEECCCTTS
T ss_pred CCCEEEEEEECCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCCCH--HHHHHHHHHHHCCCEEEEEEC
T ss_conf 998799998678565677--887068899999999997679998--99983777641--799999988757740343103
Q ss_pred ------EEEE--EECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCC
Q ss_conf ------0899--83147540267888525320112445513213426875668783899999848289999710477874
Q T0620 77 ------DYRP--IAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNE 148 (312)
Q Consensus 77 ------~y~~--~~~~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~ 148 (312)
.... .........|+++++|.++............ .......++.+.++....+..+.++|+||+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~g~~~~sk~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~n~Hl~~~~~ 157 (306)
T 2ddr_A 81 SSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGC---GPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDS 157 (306)
T ss_dssp CCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEEEEEECSCCC-------CCCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCEEEEECCC---CCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCC
T ss_conf 5677653144213344112643799987523333002310235---6542231069999980699189999932433555
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 014678999999987300034445--56653004644775456545467
Q T0620 149 KTARRNQNYLDILRLLSLGDRQLN--AFDISLRFTHLFWFGDLNYRLDM 195 (312)
Q Consensus 149 ~~~~R~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~v~~~GD~N~~~~~ 195 (312)
...++....... .+...... .......+.++|++||||.....
T Consensus 158 ~~~~~~~~~~r~----~q~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~ 202 (306)
T 2ddr_A 158 MCGKTSPASVRT----NQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKIN 202 (306)
T ss_dssp -----CHHHHHH----HHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTT
T ss_pred CCCCCHHHHHHH----HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 522101378998----888877666654212566618998347889762
No 10
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.90 E-value=5.5e-23 Score=149.87 Aligned_cols=232 Identities=16% Similarity=0.072 Sum_probs=125.5
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 99999861577277012345542321010013452057898899972147877789999999987531785089983147
Q T0620 6 SVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQS 85 (312)
Q Consensus 6 ~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~ 85 (312)
.+.|+||||+|++... ....+.+++...+||| +||||++........ + ......|.......
T Consensus 7 ~~kv~twNv~g~~~~~----------~~~~l~~~i~~~~~DI--i~LQE~~~~~~~~~~-----~-~~~~~~~~~~~~~~ 68 (238)
T 1vyb_A 7 HITILTLNINGLNSAI----------KRHRLASWIKSQDPSV--CCIQETHLTCRDTHR-----L-KIKGWRKIYQANGK 68 (238)
T ss_dssp CEEEEEEECSCCCSHH----------HHHHHHHHHHHHCCSE--EEEECCCCCTTSGGG-----C-CCTTCCEEEEECCS
T ss_pred CCEEEEEECCCCCCHH----------HHHHHHHHHHHCCCCE--EEEECCCCCCCCCCH-----H-HHCCCCCCCCCCCC
T ss_conf 8699999938862245----------4789999998769909--999846136555403-----3-32144430000002
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 54026788852532011244551321342687566878389999984828999971047787401467899999998730
Q T0620 86 LWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLS 165 (312)
Q Consensus 86 ~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i~~~~~ 165 (312)
.++.|+++++|.++....... .. ....-.+.+.+...+..+.++|+|+|+..... . .......+
T Consensus 69 ~~~~gv~i~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~--~---~~~~~~~~- 132 (238)
T 1vyb_A 69 QKKAGVAILVSDKTDFKPTKI-----KR-----DKEGHYIMVKGSIQQEELTILNIYAPNTGAPR--F---IKQVLSDL- 132 (238)
T ss_dssp SSSCCEEEEECTTCCCEEEEE-----EE-----CTTSSEEEEEEEETTEEEEEEEEECCSSSHHH--H---HHHHHHHT-
T ss_pred CCCCCCEEEEECCCCCCCCCC-----CC-----CCCCCEEEEEEEECCCCEEEEEECCCCCCCHH--H---HHHHHHHH-
T ss_conf 232342269841443324564-----21-----11452135688623686688752201022078--8---87777655-
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00344455665300464477545654546773689987302460146676656799862541143324888536624764
Q T0620 166 LGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYE 245 (312)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~ptyk~~ 245 (312)
......+++++||||......... ......... +... ..+. ...+.++||..
T Consensus 133 ----------~~~~~~~~Il~GDfN~~~~~~~~~-----~~~~~~~~~---~~~~--------~~~~--~~~l~d~~~~~ 184 (238)
T 1vyb_A 133 ----------QRDLDSHTLIMGDFNTPLSTLDRS-----TRQKVNKDT---QELN--------SALH--QADLIDIYRTL 184 (238)
T ss_dssp ----------TTTCCTTEEEEEECSSCSSGGGBT-----TCCCCCHHH---HHHH--------HHHH--HTTEEEHHHHH
T ss_pred ----------HCCCHHHEEEHHHHCCCCCHHHCC-----CCCCCHHHH---HHHH--------HHHH--HHHHHHHHHHH
T ss_conf ----------202401114074533566344314-----532211457---8999--------9998--75666655431
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 87888653434567766667772301466641754403787400027767689855799997
Q T0620 246 RGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFE 307 (312)
Q Consensus 246 ~~~~~~~t~~~~~~~~~~~r~p~w~DRIly~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~ 307 (312)
.+....++|+....+. .+..|||++ +.....++..+.+.+. ..|||+||.++++
T Consensus 185 ~~~~~~~t~~~~~~~~-----~~rID~i~~--s~~~~~~~~~~~v~~~-~~SDH~pI~~~lk 238 (238)
T 1vyb_A 185 HPKSTEYTFFSAPHHT-----YSKIDHIVG--SKALLSKCKRTEIITN-YLSDHSAIKLELR 238 (238)
T ss_dssp CTTCCCCSEEETTTTE-----EECCEEEEE--EGGGGGGEEEEEEECC-SSSSSCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCC-----CCEEEEEEE--CHHHHHHCCEEEECCC-CCCCCCCEEEEEC
T ss_conf 1456544400588997-----761689998--6289732618998989-7998234899949
No 11
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.89 E-value=1.6e-22 Score=147.24 Aligned_cols=257 Identities=15% Similarity=0.059 Sum_probs=133.0
Q ss_pred EEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 37999998615772770123455423210100134520578988999721478777899999999875317850899831
Q T0620 4 MISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAM 83 (312)
Q Consensus 4 ~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~ 83 (312)
|+| |+||||||++ ...++.+.+++...+||| |||||++..+..+... +.......+.....
T Consensus 1 ~mr--i~twNv~G~~-----------~~~~~~~~~~i~~~~~DI--i~LQE~~~~~~~~~~~----~~~~~~~~~~~~~~ 61 (259)
T 2jc5_A 1 MLK--IISANVNGIR-----------SAYKKGFYEYIAASGADI--VCVQELKAQEADLSAD----MKNPHGMHGHWHCA 61 (259)
T ss_dssp CEE--EEEEECSSHH-----------HHHHTTHHHHHHHTTCSE--EEEECCCCCGGGCCHH----HHSGGGCEEEEECC
T ss_pred CEE--EEEEECCCHH-----------HHHHHHHHHHHHHCCCCE--EEEECCCCCHHHCCHH----HHHCCCCCCEEECC
T ss_conf 919--9999835688-----------876613999997789989--9998452581117888----87224872002011
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 47540267888525320112445513213426875668783899999848289999710477874014678999999987
Q T0620 84 QSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRL 163 (312)
Q Consensus 84 ~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i~~~ 163 (312)
.+.++.++++++|.++......... .............+.+. .+.++++.................
T Consensus 62 ~~~~~~~~~~~sk~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--- 127 (259)
T 2jc5_A 62 EKRGYSGVAVYSKRKPDNVQIGMGI---------EEFDREGRFVRCDFGRL--SVISLYLPSGSSAEERQQVKYRFL--- 127 (259)
T ss_dssp SSTTCCCEEEEESSCCSEEEESCSC---------HHHHTTCCEEEEEETTE--EEEEEECCCCTTCHHHHHHHHHHH---
T ss_pred CCCCCEEEEEEECCCCEEEEECCCC---------CCCCCHHEEEEEEECCE--EEEEEECCCCCCCCCHHHHHHHHH---
T ss_conf 3577338999934784577743688---------75340006789998989--999871356763222057789999---
Q ss_pred HCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 30003444556653004644775456545467736899873024601466766567998625411433248885366247
Q T0620 164 LSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYR 243 (312)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~ptyk 243 (312)
....................++.+................................ . ...+.+.++
T Consensus 128 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~~ 193 (259)
T 2jc5_A 128 ---DAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVI---------H--KLGWTDMWR 193 (259)
T ss_dssp ---HHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCSTTCTTSTTSCHHHHHHHHHHH---------H--TTCCEEHHH
T ss_pred ---HHHHHHHHHHHCCCCCCEEECCCCCCCCHHHCCCHHHCCCCCCCCCHHHHHHHHHH---------H--CCCCCEEEE
T ss_conf ---99887766530244410450310136304320371223342466722210045565---------3--167511333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEE
Q ss_conf 648788865343456776666777230146664175440378740002776768985579999777
Q T0620 244 YERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVG 309 (312)
Q Consensus 244 ~~~~~~~~~t~~~~~~~~~~~r~p~w~DRIly~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~l~ 309 (312)
........++||++....+..+.|.++|+|+ .+++...++.++.+..+..+|||+||+++|++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~RIDyI~--~s~~l~~~~~~~~v~~~~~~SDH~Pv~~d~~~~ 257 (259)
T 2jc5_A 194 TLYPDVPGYTWWSNRGQAYAKDVGWRIDYQM--VTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp HHCTTCCCCCEESCSSHHHHTTCEECCEEEE--ECHHHHTTEEEEEECCSSCCSSBCCEEEEESCC
T ss_pred EECCCCCCCEEECCCCCCCCCCCCEEEEEEE--ECHHHHHHCEEEEECCCCCCCCCCEEEEEEECC
T ss_conf 3147888751206778863589886108999--774896132599999999989831399999689
No 12
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.89 E-value=1.8e-21 Score=141.05 Aligned_cols=180 Identities=17% Similarity=0.143 Sum_probs=95.5
Q ss_pred CCCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEE--
Q ss_conf 997379999986157727701234554232101001345205789889997214787778999999998753178508--
Q T0620 1 EPDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDY-- 78 (312)
Q Consensus 1 ~p~~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y-- 78 (312)
.|+.||| +||||...+.... ..|. ...+.+.+...+...+||| |||||+..... .+.+...+.......+
T Consensus 7 ~~~~lki--~t~Nv~~~~~~~~-~~~~-~~~r~~~i~~~i~~~~~DI--v~LQEV~~~~~--~~~~~~~~~~~~~~~~~~ 78 (301)
T 1zwx_A 7 YPGNFKI--TSHNVYLFSRNIY-PNWG-QMHRADLIAQADYMKNNDV--VILNEAFDTSA--SHRLLNNLREMYPHQTPV 78 (301)
T ss_dssp CCCSCEE--EEEEEEECCTTTS-TTSC-HHHHHHHHHTSGGGSSCSE--EEEEEECSHHH--HHHHHHHTTTTCCEECCC
T ss_pred CCCCEEE--EEEECCCCCCCCC-CCCC-HHHHHHHHHHHHHHCCCCE--EEEECCCCCCH--HHHHHHHHHHHCCCEEEE
T ss_conf 9998799--9983886765668-9816-8999999999987569988--99985877005--899999876532613310
Q ss_pred ------------EEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCC
Q ss_conf ------------99831475402678885253201124455132134268756687838999998482899997104778
Q T0620 79 ------------RPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSG 146 (312)
Q Consensus 79 ------------~~~~~~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~ 146 (312)
...........|+++++|.++......... ..+....+..+|++.+.....+..+.++|+|++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~g~~ilsr~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~ 155 (301)
T 1zwx_A 79 IGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQ---RGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQAD 155 (301)
T ss_dssp TTSCSTTCSEEEC-----CCBCCCCEEEESSCEEEEEEEECS---CCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCEECCCEEEEEEECCCHHHEEEECC---CCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCC
T ss_conf 113544334211345553030660799984162011034125---45553233574179999806992899998314555
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHCCCCEEEECCCCCCCC
Q ss_conf 740146789999999873000344455-665300464477545654546
Q T0620 147 NEKTARRNQNYLDILRLLSLGDRQLNA-FDISLRFTHLFWFGDLNYRLD 194 (312)
Q Consensus 147 ~~~~~~R~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~v~~~GD~N~~~~ 194 (312)
.........+. .+........... ........++|+|||||....
T Consensus 156 ~~~~~~~~~~~---~r~~q~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~ 201 (301)
T 1zwx_A 156 DSLISKDTSRA---IRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYG 201 (301)
T ss_dssp CTTSCHHHHHH---HHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTT
T ss_pred CCCCCHHHHHH---HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
T ss_conf 44543046789---99999998642221013577745999977798887
No 13
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.87 E-value=3.7e-20 Score=133.50 Aligned_cols=247 Identities=19% Similarity=0.204 Sum_probs=119.0
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE--C
Q ss_conf 99999861577277012345542321010013452057898899972147877789999999987531785089983--1
Q T0620 6 SVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIA--M 83 (312)
Q Consensus 6 ~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~--~ 83 (312)
.|.|+||||....+......|- .+...+..++...+||| |||||+.... + ..+...| ..+.|.... .
T Consensus 3 ~lrv~T~Ni~~~~~~~~~~~~~---~R~~~i~~~i~~~~~DV--v~lQEv~~~~--~-~~l~~~l---~~~~~~~~~~~~ 71 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDSLNNWQ---YRKDRVCQFIKDHELDI--VGMQEVLHNQ--F-QDLRAGL---PEYDGIGVGRDD 71 (267)
T ss_dssp EEEEEEEECCCCCGGGGGGSGG---GTHHHHHHHHHHTTCSE--EEEESBCHHH--H-HHHHHHC---TTEEEECCCTTT
T ss_pred CEEEEEEECCCCCCCCCCCCHH---HHHHHHHHHHHHCCCCE--EEEECCCHHH--H-HHHHHHC---CCCCEEEECCCC
T ss_conf 4599999768388885535899---99999999998659989--9998377789--9-9999861---248526654547
Q ss_pred CCCCEEEEEEEECCCCCCCCCCC----CCCCEEECCCCC--CCCCCCEEEEEEE--CCEEEEEEEEECCCCCCCHHHHHH
Q ss_conf 47540267888525320112445----513213426875--6687838999998--482899997104778740146789
Q T0620 84 QSLWNIKVAVLVKPEHENRISHV----STSSVKTGIANT--LGNKGAVGVSFMF--NGTSFGFVNCHLTSGNEKTARRNQ 155 (312)
Q Consensus 84 ~~~~~~gv~vf~r~~~~~~i~~~----~~~~~~~g~~~~--~~~kG~v~i~~~~--~~~~i~~in~hl~a~~~~~~~R~~ 155 (312)
....+.++++++|.+..+.+... .......+..+. ...+......+.. .+..+.++|+|+++... +.|..
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~h~~~~~~--~~R~~ 149 (267)
T 3g6s_A 72 GKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVGE--EARRQ 149 (267)
T ss_dssp SSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCH--HHHHH
T ss_pred CCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCH--HHHHH
T ss_conf 8777624799993574126741037426886534433457664337999998726999689999622665578--99999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999987300034445566530046447754565454677368998730246014667665679986254114332488
Q T0620 156 NYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEE 235 (312)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~ 235 (312)
+...+...+ .......+++++||||...... ....+...... ....+.+..
T Consensus 150 q~~~l~~~i----------~~~~~~~pvi~~GDfN~~~~~~---~~~~l~~~~~~----------------~~~~~~~~~ 200 (267)
T 3g6s_A 150 SALLIIRKI----------KEIVGERPAVVTGDFNVTDASD---AYETITTNEFV----------------MKDAYKTAA 200 (267)
T ss_dssp HHHHHHHHH----------HHHTTTSCEEEEEECSSCTTSH---HHHHHHSSSSC----------------CEEHHHHCS
T ss_pred HHHHHHHHH----------HHHCCCCCEEEECCCCCCCCCH---HHHHHHHCCCC----------------CHHHHHHHH
T ss_conf 999999999----------8624689969847778898748---99999853653----------------203566530
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECC---CCCCCCCCCEEEEEEEEE
Q ss_conf 853662476487888653434567766667772301466641754403787400027---767689855799997776
Q T0620 236 ISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTD---DIVTSDHSPVFGTFEVGV 310 (312)
Q Consensus 236 i~F~ptyk~~~~~~~~~t~~~~~~~~~~~r~p~w~DRIly~~~~~~~~~~~~y~~~~---~~~~SDH~PV~a~f~l~v 310 (312)
.. ....++|+.+.. .....+.+.|+|++ ++. +++..+.+.. ....|||+||.++|+||-
T Consensus 201 ~~----------~~~~~t~~~~~~--~~~~~~~riD~il~--s~~--~~v~~~~v~~~~~~~~~SDH~Pv~~~l~lk~ 262 (267)
T 3g6s_A 201 RV----------TGVDYTFHDFAR--IPAEDCEKIDFIFV--TPQ--VLVKSCEIPAEVPEALLSDHNPQLADLELEH 262 (267)
T ss_dssp EE----------EECSCSBCTTTT--SCGGGCCCCEEEEE--CTT--SEEEEEEECCCCSSSCCCSBCCEEEEEEEC-
T ss_pred CC----------CCCCCCCCCCCC--CCCCCCCEEEEEEE--CCC--EEEEEEEECCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 23----------688764378887--67788842789998--899--4899999758888986897120699999995
No 14
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.85 E-value=9.9e-20 Score=130.99 Aligned_cols=224 Identities=15% Similarity=0.058 Sum_probs=116.1
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 99998615772770123455423210100134520578988999721478777899999999875317850899831475
Q T0620 7 VFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSL 86 (312)
Q Consensus 7 v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~~ 86 (312)
+.|+||||++.+. ....+..++...+||| +||||++...... +.......+........
T Consensus 20 lrv~t~Nv~~~~~------------~~~~l~~~i~~~~~DI--v~lQE~~~~~~~~-------~~~~~~~~~~~~~~~~~ 78 (245)
T 1wdu_A 20 YRVLQANLQRKKL------------ATAELAIEAATRKAAI--ALIQEPYVGGAKS-------MKGFRGVRVFQSTAQGD 78 (245)
T ss_dssp EEEEEEECTTCHH------------HHHHHHHHHHHHTCSE--EEEESCCC-------------CCCSSCEEEECCCCTT
T ss_pred EEEEEECCCCCHH------------HHHHHHHHHHHCCCCE--EEEECCCCCCCCC-------CHHCCCCEEEEEECCCC
T ss_conf 7999884798766------------8999999998619989--9998788777652-------00025611367645689
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 40267888525320112445513213426875668783899999848289999710477874014678999999987300
Q T0620 87 WNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSL 166 (312)
Q Consensus 87 ~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i~~~~~~ 166 (312)
+..|++++++.+........ .......+.+.+...+..+.++|+|+|.+..... +......+.
T Consensus 79 ~~~g~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~~~-~~~~l~~~~----- 141 (245)
T 1wdu_A 79 GTVKAAIAVFDHDLDVIQYP-----------QLTTNNIVVVGIRTRAWEITLVSYYFEPDKPIES-YLEQIKRVE----- 141 (245)
T ss_dssp CCCCEEEEECCSSCEEEECT-----------TTCCSSEEEEEEECSSCEEEEEEEECCTTSCSHH-HHHHHHHHH-----
T ss_pred CCCEEEEEEECCCCCEEEEC-----------CCCCCCEEEEEEEECCCCEEEEEEECCCCCCHHH-HHHHHHHHH-----
T ss_conf 98679999971564135514-----------8887985999999089208999996087443189-999999998-----
Q ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03444556653004644775456545467736899873024601466766567998625411433248885366247648
Q T0620 167 GDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYER 246 (312)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~ptyk~~~ 246 (312)
......+++++||||......... .... ....+........ +...
T Consensus 142 ---------~~~~~~~~ii~GDfN~~~~~~~~~---------~~~~-~~~~~~~~~~~~~-~~~~--------------- 186 (245)
T 1wdu_A 142 ---------RKMGPKRLIFGGDANAKSTWWGSK---------EDDA-RGDQLMGTLGELG-LHIL--------------- 186 (245)
T ss_dssp ---------HTTCSSSEEEEEECCCCCGGGTCS---------SCCH-HHHHHHHHHHHHT-CEEC---------------
T ss_pred ---------HHCCCCEEEECCCCCCCCHHHCCC---------CCHH-HHHHHHHHHHHHC-CCCC---------------
T ss_conf ---------752797399805467477111344---------2103-6899998987516-4111---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-ECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEE
Q ss_conf 788865343456776666777230146664-175440378740002776768985579999777
Q T0620 247 GSRDTYAWHKQKPTGVRTNVPSWCDRILWK-SYPETHIICNSYGCTDDIVTSDHSPVFGTFEVG 309 (312)
Q Consensus 247 ~~~~~~t~~~~~~~~~~~r~p~w~DRIly~-~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~l~ 309 (312)
......++|...... +.+. ||||. .++....++..+.+.++..+|||+||.++++++
T Consensus 187 ~~~~~~~~~~~~~~~---~~~~---rID~i~~s~~l~~~v~~~~v~~~~~~SDH~pv~~~l~l~ 244 (245)
T 1wdu_A 187 NEGDVPTFDTIRGGK---RYQS---RVDVTFCTEDMLDLIDGWRVDEDLVSSDHNGMVFNIRLQ 244 (245)
T ss_dssp CCSCCCSEEC--------CCEE---CCEEEEECGGGBTTEEEEEECTTSSSSSBCCEEEEECCC
T ss_pred CCCCCCCCCCCCCCC---CCCC---CEEEEEECCHHHHCCEEEEECCCCCCCCCHHEEEEEEEE
T ss_conf 257743332567788---8887---556999893287206589998999997914789999984
No 15
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.83 E-value=1.1e-19 Score=130.84 Aligned_cols=248 Identities=16% Similarity=0.133 Sum_probs=112.2
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 99986157727701234554232101001345205789889997214787778999999998753178508998314754
Q T0620 8 FIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLW 87 (312)
Q Consensus 8 ~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~~~ 87 (312)
.|+||||||++.+ .+.+.+++...+||| |||||+++.+..+.+.. ... .... ........
T Consensus 3 ki~T~NvnG~~~r------------~~~i~~~i~~~~~DI--i~LQEvk~~~~~~~~~~---~~~-~~~~--~~~~~~~~ 62 (257)
T 2voa_A 3 KIATFNVNSIRSR------------LHIVIPWLKENKPDI--LCMQETKVENRKFPEAD---FHR-IGYH--VVFSGSKG 62 (257)
T ss_dssp EEEEEECSCGGGT------------HHHHHHHHHHHCCSE--EEEECCCCCGGGCCHHH---HHT-TTCE--EEEEEETT
T ss_pred EEEEEEECCHHHH------------HHHHHHHHHHCCCCE--EEEECCCCCHHHCCHHH---HHC-CCCE--EEECCCCC
T ss_conf 9999980989998------------999999998679988--99982618936688867---612-4624--78603566
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 02678885253201124455132134268756687838999998482899997104778740146789999999873000
Q T0620 88 NIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLG 167 (312)
Q Consensus 88 ~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i~~~~~~~ 167 (312)
..+..+..+...... ..+.............. ....+..+.++.+........+....... . .
T Consensus 63 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~ 125 (257)
T 2voa_A 63 RNGVAIASLEEPEDV---------SFGLDSEPKDEDRLIRA---KIAGIDVINTYVPQGFKIDSEKYQYKLQW-L----E 125 (257)
T ss_dssp EEEEEEEESSCCEEE---------EESCSSSSCCGGGEEEE---EETTEEEEEEECCCCSCTTSHHHHHHHHH-H----H
T ss_pred CCCCEEECCCCCEEE---------EECCCCCCCCCCEEEEE---EECCEEEEEEEEECCCCCCHHHHHHHHHH-H----H
T ss_conf 665212215775037---------84133333556606886---30774799998614887864777888888-8----9
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34445566530046447754565454677368998730-24601466766567998625411433248885366247648
Q T0620 168 DRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYIS-RKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYER 246 (312)
Q Consensus 168 ~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~-~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~ptyk~~~ 246 (312)
..................+++++............... ....... . ...+..+.+ ..|.++|+...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~l~~--~~~~d~~~~~~ 192 (257)
T 2voa_A 126 RLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHED-A----------RRAYKKILE--LGFVDVLRKIH 192 (257)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGCTTSTTTCHH-H----------HHHHHHHHT--TTCEEHHHHHS
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHH-H----------HHHHHHHHH--CCCEEEEHHHC
T ss_conf 8988887642001221014442336403202681103366777889-9----------999999986--78865432227
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCEEEEEE-ECCCCCEEEEEEEEC----CCCCCCCCCCEEEEEEE
Q ss_conf 7888653434567-76666777230146664-175440378740002----77676898557999977
Q T0620 247 GSRDTYAWHKQKP-TGVRTNVPSWCDRILWK-SYPETHIICNSYGCT----DDIVTSDHSPVFGTFEV 308 (312)
Q Consensus 247 ~~~~~~t~~~~~~-~~~~~r~p~w~DRIly~-~~~~~~~~~~~y~~~----~~~~~SDH~PV~a~f~l 308 (312)
+....++||.... +....+ +++ ||||. .+++...++.++.+. ....+|||+||.++|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~n-~~~--RIDyI~~s~~l~~~~~~~~i~~~~~~~~~~SDH~Pv~~~~~i 257 (257)
T 2voa_A 193 PNERIYTFYDYRVKGAIERG-LGW--RGDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp TTCCCCSBCCTTSTTTTTTT-CCB--CCEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCC-CCE--EEEEEEECHHHHHHHCEEEEEECCCCCCCCCCCEEEEEEEEC
T ss_conf 77554312034567755479-974--468999885998540289997512479999982029999989
No 16
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.79 E-value=1.3e-17 Score=118.74 Aligned_cols=159 Identities=15% Similarity=0.062 Sum_probs=74.5
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC-CC
Q ss_conf 99998615772770123455423210100134520578988999721478777899999999875317850899831-47
Q T0620 7 VFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAM-QS 85 (312)
Q Consensus 7 v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~-~~ 85 (312)
|.|+||||....+......|- .+.+.+.+++...+||| |||||+.... +.. . .......|..... ..
T Consensus 1 lrI~t~Ni~~~~~~~~~~~~~---~R~~~i~~~i~~~~~DI--i~LQEv~~~~--~~~-~----~~~~~~~~~~~~~~~~ 68 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWS---FRKEAVCQLINFHDWSL--CCIQEVRPNQ--VRD-L----KAYTTFTCLSAEREGD 68 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHH---HHHHHHHHHHHHHCCSE--EEEEEECHHH--HHH-H----HHHSSSEEEEEESSSS
T ss_pred CEEEEEECCCCCCCCCCCCHH---HHHHHHHHHHHHCCCCE--EEEECCCHHH--HHH-H----HHHCCCCCEEEECCCC
T ss_conf 989999678087886445899---99999999998639999--9998686789--888-8----7500364114402577
Q ss_pred CCEEEEEEEECCCCCCCCCCCC------CCCEEECCCCCCCCCCCE--EEEEEE--CCEEEEEEEEECCCCCCCHHHHHH
Q ss_conf 5402678885253201124455------132134268756687838--999998--482899997104778740146789
Q T0620 86 LWNIKVAVLVKPEHENRISHVS------TSSVKTGIANTLGNKGAV--GVSFMF--NGTSFGFVNCHLTSGNEKTARRNQ 155 (312)
Q Consensus 86 ~~~~gv~vf~r~~~~~~i~~~~------~~~~~~g~~~~~~~kG~v--~i~~~~--~~~~i~~in~hl~a~~~~~~~R~~ 155 (312)
....+..++.+++....+.... ......+ ........ ...+.. ....+.++|+|+......... .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~n~h~~~~~~~~~~--~ 143 (257)
T 3l1w_A 69 GQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIH---PEAGCPRIALWGLFKETTQNTPFLVINVHLDHISAHARL--A 143 (257)
T ss_dssp SCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCC---TTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSCHHHHH--H
T ss_pred CCCCEEEEEECCCCCCEEEECCEECCCCCCCCCCC---CCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCHHHHH--H
T ss_conf 66615689971676634530211036674301124---555555246788988637870799971256666315678--9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 9999998730003444556653004644775456545
Q T0620 156 NYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYR 192 (312)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~ 192 (312)
....... .........+++++||||..
T Consensus 144 ~~~~~~~----------~~~~~~~~~~~i~~GDfN~~ 170 (257)
T 3l1w_A 144 GMTVILE----------ELHDKIAQYPTLLMGDFNAE 170 (257)
T ss_dssp HHHHHHH----------HTHHHHHHSCEEEEEECCCC
T ss_pred HHHHHHH----------HHHHHCCCCCEEECCCCCCC
T ss_conf 9999999----------99860668987856878899
No 17
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.70 E-value=1.1e-16 Score=113.42 Aligned_cols=164 Identities=16% Similarity=0.120 Sum_probs=73.6
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCC--CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 999986157727701234554232101001345205--789889997214787778999999998753178508998314
Q T0620 7 VFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVT--IPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQ 84 (312)
Q Consensus 7 v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~ 84 (312)
+.|+||||+++.... .......+.+.. .+||| |||||++.........+...+.......|......
T Consensus 1 lrI~t~Ni~~~~~~~---------~~~~~~~~~i~~~~~~~DV--v~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (260)
T 2a40_B 1 LKIAAFNIRTFGETK---------MSNATLASYIVRIVRRYDI--VLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSE 69 (260)
T ss_dssp CEEEEEEEEEESHHH---------HHSHHHHHHHHHHHTTCSE--EEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECC
T ss_pred CEEEEEECCCCCCCC---------CCHHHHHHHHHHHCCCCCE--EEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 989999588337786---------6649999999997389998--99980337774089999987530367750489504
Q ss_pred CCC----EEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEE---CCEEEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 754----02678885253201124455132134268756687838999998---48289999710477874014678999
Q T0620 85 SLW----NIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMF---NGTSFGFVNCHLTSGNEKTARRNQNY 157 (312)
Q Consensus 85 ~~~----~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~---~~~~i~~in~hl~a~~~~~~~R~~~~ 157 (312)
..+ +.+.+++.+................................+.. .+..+.++|+|+.+.... .|....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~Hl~~~~~~--~~~~~~ 147 (260)
T 2a40_B 70 PLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAV--AEINSL 147 (260)
T ss_dssp CBCSSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGGHH--HHHHHH
T ss_pred CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHH--HHHHHH
T ss_conf 677776652568875034200035410156544564422220103688996057872899850233332148--999998
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 999987300034445566530046447754565454
Q T0620 158 LDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRL 193 (312)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~~ 193 (312)
..+.+. ........++|++||||...
T Consensus 148 ~~~~~~----------~~~~~~~~~vIv~GDfN~~~ 173 (260)
T 2a40_B 148 YDVYLD----------VQQKWHLNDVMLMGDFNADC 173 (260)
T ss_dssp HHHHHH----------HHHHHCCCCEEEEEECCCST
T ss_pred HHHHHH----------HHHHCCCCCEEEECCCCCCC
T ss_conf 999998----------87504678779834125677
No 18
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.70 E-value=1.5e-15 Score=106.78 Aligned_cols=213 Identities=15% Similarity=0.079 Sum_probs=103.9
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 99998615772770123455423210100134520578988999721478777899999999875317850899831475
Q T0620 7 VFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSL 86 (312)
Q Consensus 7 v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~~ 86 (312)
+.|+||||||.+.. ...+..++...++|| ++|||++.... +.. ...
T Consensus 8 LrI~~~N~~~~~~~------------~~~l~~~i~~~~~DI--v~lQE~~~~~~-----------------~~~-~~~-- 53 (240)
T 2ei9_A 8 LRIGQINLGGAEDA------------TRELPSIARDLGLDI--VLVQEQYSMVG-----------------FLA-QCG-- 53 (240)
T ss_dssp EEEEEEECTTCHHH------------HHTHHHHHHHHTCSE--EEEESCCTTSS-----------------SEE-CCS--
T ss_pred CEEEEECCCCCHHH------------HHHHHHHHHHHCCCE--EEEECCCCCCC-----------------CCC-CCC--
T ss_conf 38998817984789------------999999999619999--99944672788-----------------487-447--
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 40267888525320112445513213426875668783899999848289999710477874014678999999987300
Q T0620 87 WNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSL 166 (312)
Q Consensus 87 ~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i~~~~~~ 166 (312)
++.|++|+++.+........ ...+. .++.+.+.+..+.++++|+|.+.... .....+..+.
T Consensus 54 ~~~g~aI~v~~~~~~~~~~~-----------~~~~~--~~~~v~~~~~~i~i~svY~pp~~~~~-~~~~~l~~~~----- 114 (240)
T 2ei9_A 54 AHPKAGVYIRNRVLPCAVLH-----------HLSST--HITVVHIGGWDLYMVSAYFQYSDPID-PYLHRLGNIL----- 114 (240)
T ss_dssp SSCSEEEEESSTTSCEEECG-----------GGCCS--SEEEEEETTTTEEEEEEECCTTSCSH-HHHHHHHHHH-----
T ss_pred CCCCEEEEEECCCCCCEECC-----------CCCCC--CEEEEEECCEEEEEEEEECCCCCCHH-HHHHHHHHHH-----
T ss_conf 99848999936887722311-----------47866--47999979927999999859898657-9999999999-----
Q ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03444556653004644775456545467736899873024601466766567998625411433248885366247648
Q T0620 167 GDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYER 246 (312)
Q Consensus 167 ~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~ptyk~~~ 246 (312)
......+++++||||.....-............. .-...+.+....... .+ +...
T Consensus 115 ---------~~~~~~~~Ii~GDfN~~~~~w~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~~--------------~~~~ 169 (240)
T 2ei9_A 115 ---------DRLRGARVVICADTNAHSPLWHSLPRHYVGRGQE-VADRRAKMEDFIGAR-RL--------------VVHN 169 (240)
T ss_dssp ---------HHTTTSCEEEEEECCCCCGGGTCCHHHHSSSCHH-HHHHHHHHHHHHHHT-TC--------------EECC
T ss_pred ---------HHCCCCCEEEEEHHCCCCHHHHHCCCCCCCCCCC-CCHHHHHHHHHHHHC-CE--------------EECC
T ss_conf ---------7468987899501025670553045554355554-667687998876412-02--------------3305
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEE
Q ss_conf 788865343456776666777230146664175440378740002776768985579999777
Q T0620 247 GSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVG 309 (312)
Q Consensus 247 ~~~~~~t~~~~~~~~~~~r~p~w~DRIly~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~l~ 309 (312)
.....+||++.+. ++..|+|+ ++... .+..+.+.+. ..|||+||.+++...
T Consensus 170 ~~~~~~T~~~~~~-------~~~ID~i~--~s~~~--~~~~~~v~~~-~~SDH~~i~~~l~~~ 220 (240)
T 2ei9_A 170 ADGHLPTFSTANG-------ESYVDVTL--STRGV--RVSEWRVTNE-SSSDHRLIVFGVGGG 220 (240)
T ss_dssp CTTCCCSEEETTE-------EECCEEEE--ECTTC--CEEEEEECSC-CSSSBCCEEEEEEC-
T ss_pred CCCCCCCCCCCCC-------CCEEEEEE--ECCCC--EEEEEEECCC-CCCCCHHEEEEEECC
T ss_conf 7888675568998-------96787899--17860--1677896689-999943569999678
No 19
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.70 E-value=2.7e-17 Score=116.86 Aligned_cols=157 Identities=12% Similarity=0.135 Sum_probs=73.9
Q ss_pred CCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHH-CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC-------
Q ss_conf 973799999861577277012345542321010013452-057898899972147877789999999987531-------
Q T0620 2 PDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVT-VTIPHDIYVFGTQENSVGDREWLDLLRGGLKEL------- 73 (312)
Q Consensus 2 p~~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~------- 73 (312)
++.|| |+||||++...+..- .|. ..+..++ ...+||| |||||++........ ....+...
T Consensus 13 ~~~lr--v~TWNi~~~~~~~~~-~~~------~~~~~~i~~~~~~DI--i~LQEv~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (262)
T 2f1n_A 13 LTDFR--VATWNLQGASATTES-KWN------INVRQLISGENAVDI--LAVQEAGSPPSTAVD-TGRVIPSPGIPVREL 80 (262)
T ss_dssp GGGCC--EEEEEEEECTTSCHH-HHH------THHHHHHSSTTCCSE--EEEEEECSCCTTCEE-CCCCCCCSSCCCEEE
T ss_pred CCCCE--EEEEECCCCCCCCCC-CHH------HHHHHHHHHCCCCCE--EEEECCCCHHCCCHH-HHHHHCCCCCCHHHH
T ss_conf 88758--999929977787645-367------999999972889899--999827840202245-665530457416664
Q ss_pred -------CC----CEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEE
Q ss_conf -------78----5089983147540267888525320112445513213426875668783899999848289999710
Q T0620 74 -------TD----LDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCH 142 (312)
Q Consensus 74 -------~~----~~y~~~~~~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~h 142 (312)
.. ..|........+..|++++++.++....... .....+.......+. .+.++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ls~~~~~~~~~~~-----------~~~~~~~~~~~~~~~--~~~~~~~h 147 (262)
T 2f1n_A 81 IWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLS-----------PVRQGGRPLLGIRIG--NDAFFTAH 147 (262)
T ss_dssp EEECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEEEEEC-----------CSSTTCCCEEEEEET--TEEEEEEE
T ss_pred HHHCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCHHCCCCC-----------CCCCCCCEEEEEEEC--CEEEEEEE
T ss_conf 32013456751378886314544514414999701610120037-----------776445303688848--86999999
Q ss_pred CCCCCCCHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 4778740146789-9999998730003444556653004644775456545
Q T0620 143 LTSGNEKTARRNQ-NYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYR 192 (312)
Q Consensus 143 l~a~~~~~~~R~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~ 192 (312)
++++......+.. ...... ...........+++++||||..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~viv~GDFN~~ 189 (262)
T 2f1n_A 148 AIAMRNNDAPALVEEVYNFF---------RDSRDPVHQALNWMILGDFNRE 189 (262)
T ss_dssp CCSSSSCSHHHHHHHHHHHH---------HTCSSHHHHTCEEEEEEECSSC
T ss_pred ECCCCCCCHHHHHHHHHHHH---------HHHHHHHCCCCCEEECCCCCCC
T ss_conf 69999720799999999999---------9998863468976765545778
No 20
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.53 E-value=1.5e-13 Score=95.14 Aligned_cols=162 Identities=13% Similarity=0.084 Sum_probs=68.9
Q ss_pred CCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCC--C---
Q ss_conf 97379999986157727701234554232101001345205789889997214787778999999998753178--5---
Q T0620 2 PDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTD--L--- 76 (312)
Q Consensus 2 p~~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~--~--- 76 (312)
+++||| +||||++.....+- .|... ....+....++|| |||||++....... .........+. .
T Consensus 2 ~~~~rV--~TwNi~~~~~~~~~-~~~~~-----~~~~i~~~~~~DV--i~LQEv~~~~~~~~-~~~~~~~~~~~~~~~~~ 70 (261)
T 1sr4_B 2 LSDFKV--ATWNLQGSSAVNES-KWNIN-----VRQLLSGEQGADI--LMVQEAGSLPSSAV-RTSRVIQHGGTPIEEYT 70 (261)
T ss_dssp GGGSCE--EEEECCCCSSSSHH-HHHHH-----HHHHHCSTTCCSE--EEEESCCSCCTTCE-ECSCCCCCSSSCCEEEE
T ss_pred CCCCEE--EEEECCCCCCCCCC-CCHHH-----HHHHHHHCCCCCE--EEEECCCCCCCCCH-HHHHHHHCCCCCCCCEE
T ss_conf 878889--99978958787543-20699-----9999985689899--99983676566203-36765430277622013
Q ss_pred -----------EEEEEEC--CCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEEC
Q ss_conf -----------0899831--475402678885253201124455132134268756687838999998482899997104
Q T0620 77 -----------DYRPIAM--QSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHL 143 (312)
Q Consensus 77 -----------~y~~~~~--~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl 143 (312)
.+..... ...+..|+++++|.++......... ..+...+.++...+. .+.+.+.|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~ls~~p~~~~~~~~~~---------~~~~~~R~~~~~~~~--~~~~~~~~~ 139 (261)
T 1sr4_B 71 WNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSD---------SSVLQSRPAVGIRIG--TDVFFTVHA 139 (261)
T ss_dssp EESSCSSSCCEEEEEEECCCTTTSCSCEEEEESSCCSEEEEECCC---------CCSSCCCCEEEEEET--TEEEEEEEC
T ss_pred EECCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCEEECCC---------CCCCCCCEEEEEEEE--CCCCCEEEE
T ss_conf 420555678557999733443340666899958776450573588---------766541037999972--466303898
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 7787401467899999998730003444556653004644775456545
Q T0620 144 TSGNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYR 192 (312)
Q Consensus 144 ~a~~~~~~~R~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~ 192 (312)
.++....... ........+. ...........+++++||||..
T Consensus 140 ~~~~~~~~~~--~~~~~~~~l~-----~~~~~~~~~~~~vil~GDFN~~ 181 (261)
T 1sr4_B 140 LATGGSDAVS--LIRNIFTTFN-----SSSSPPERRVYSWMVVGDFNRA 181 (261)
T ss_dssp CTTTTTTHHH--HHHHHHHHHH-----C---CGGGGGCEEEEEEECSSC
T ss_pred ECCCCCCHHH--HHHHHHHHHH-----HHHHHHCCCCCCEEEEHHCCCC
T ss_conf 2388851788--9999999999-----9877750578978971002654
Done!