Query         T0620 INPPL1B, Homo Sapiens, 312 residues
Match_columns 312
No_of_seqs    117 out of 1623
Neff          9.6 
Searched_HMMs 15564
Date          Thu Jul 22 15:15:08 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0620.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0620.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1i9za_ d.151.1.2 (A:) Synapto 100.0       0       0  430.5  27.8  283    2-311    22-318 (345)
  2 d2imqx1 d.151.1.2 (X:3-282) Sa 100.0       0       0  312.9  25.2  273    2-310     2-280 (280)
  3 d1akoa_ d.151.1.1 (A:) DNA-rep 100.0 4.4E-33 2.8E-37  207.5   8.7  252    8-307     2-267 (268)
  4 d1hd7a_ d.151.1.1 (A:) DNA rep  99.9 4.2E-25 2.7E-29  161.2  18.5  257    2-308    16-275 (275)
  5 d1vyba_ d.151.1.1 (A:) Endonuc  99.9 3.6E-23 2.3E-27  150.0  15.5  231    6-307     5-236 (236)
  6 d2ddra1 d.151.1.3 (A:7-305) Sp  99.9 4.9E-22 3.1E-26  143.4  18.3  173    3-194     2-195 (299)
  7 d1zwxa1 d.151.1.3 (A:41-333) S  99.9 4.8E-22 3.1E-26  143.5  16.7  174    2-194     2-195 (293)
  8 d1wdua_ d.151.1.1 (A:) Endonuc  99.8 7.7E-20   5E-24  130.7  16.8  225    5-309     3-227 (228)
  9 d1akoa_ d.151.1.1 (A:) DNA-rep  99.8 5.3E-19 3.4E-23  125.9  18.1  253    8-307     2-267 (268)
 10 d2a40b1 d.151.1.1 (B:1-260) De  99.7 3.7E-17 2.4E-21  115.2  11.7  167    7-194     1-174 (260)
 11 d2f1na1 d.151.1.1 (A:1-250) Cy  99.7 3.1E-16   2E-20  109.8   9.9  155    7-192     5-178 (250)
 12 d1sr4b_ d.151.1.1 (B:) Cytolet  99.6 7.1E-15 4.6E-19  101.9  10.2  158    8-192     6-181 (261)

No 1  
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=100.00  E-value=0  Score=430.55  Aligned_cols=283  Identities=29%  Similarity=0.538  Sum_probs=250.1

Q ss_pred             CCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCC-C-----------HHHHHHHHHHH
Q ss_conf             97379999986157727701234554232101001345205789889997214787-7-----------78999999998
Q T0620             2 PDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSV-G-----------DREWLDLLRGG   69 (312)
Q Consensus         2 p~~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~-~-----------~~~~~~~~~~~   69 (312)
                      ...|+|+|+||||||.+|+.++.+||...          ....||||||||||+.. .           .+.|...+...
T Consensus        22 ~~~l~I~v~TWNv~~~~~~~~l~~~l~~~----------~~~~~DI~viglQEi~~~~~~~~~~~~~~~~~~w~~~~~~~   91 (345)
T d1i9za_          22 HKNVKIFVASYNLNGCSATTKLENWLFPE----------NTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRL   91 (345)
T ss_dssp             EEEEEEEEEEEECTTCCCCSCCHHHHSCS----------SSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEECCCCCCCCCCHHHHHCCC----------CCCCCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             77318999998679963880568764667----------88999999997624773632231036742467899999875


Q ss_pred             HHH--CCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCC
Q ss_conf             753--178508998314754026788852532011244551321342687566878389999984828999971047787
Q T0620            70 LKE--LTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGN  147 (312)
Q Consensus        70 l~~--~~~~~y~~~~~~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~  147 (312)
                      +..  .....|..+.+.+++|++++||+|+++.+.++.+..+.+++|++|.++|||+|++++.++++.++|+|+|||||+
T Consensus        92 ~~~~~~~~~~Y~~v~~~~~~g~~l~vf~r~~~~~~i~~v~~~~~~~g~~g~~gnKGaV~vr~~i~~t~l~fvn~HL~ag~  171 (345)
T d1i9za_          92 LNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGY  171 (345)
T ss_dssp             HHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCS
T ss_pred             CCCCCCCCCCEEEEEEECCCCCEEEEEECCHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCC
T ss_conf             35011679984899973106708999982511155653126789657688536886499999998999999970466766


Q ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             40146789999999873000344455665300464477545654546773689987302460146676656799862541
Q T0620           148 EKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKV  227 (312)
Q Consensus       148 ~~~~~R~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  227 (312)
                      .+.++|+.++..|++.+.+...     +.+...+++||+||||||++++.....+.+...++..|+++||+..++..+..
T Consensus       172 ~~~~~R~~~~~~i~~~l~~~~~-----~~~~~~d~v~~~GDlN~R~~~~~~~~~~~i~~~~~~~l~~~dql~~~~~~~~~  246 (345)
T d1i9za_         172 TNYDERDHDYRTIASGLRFRRG-----RSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKV  246 (345)
T ss_dssp             SCHHHHHHHHHHHHHHCCCGGG-----CCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSS
T ss_pred             CCHHHHHHHHHHHHHHHCCCCC-----CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             3067788789999986113556-----55456752699623231346751666765422426678899998765543471


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf             14332488853662476487888653434567766667772301466641754403787400027767689855799997
Q T0620           228 FLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFE  307 (312)
Q Consensus       228 ~~~~~e~~i~F~ptyk~~~~~~~~~t~~~~~~~~~~~r~p~w~DRIly~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~  307 (312)
                      |.+|.|++|+|+|||||..++..+.+       +.++|+|||||||||+.    .+.+..|.++ ++..|||+||+|+|+
T Consensus       247 ~~~~~E~~I~F~PTyk~~~~~~~yd~-------~~k~RiPsWcDRIL~~~----~~~~~~Y~s~-~~~~SDH~PV~a~f~  314 (345)
T d1i9za_         247 FPFFSELPITFPPTYKFDIGTDIYDT-------SDKHRVPAWTDRILYRG----ELVPHSYQSV-PLYYSDHRPIYATYE  314 (345)
T ss_dssp             STTCBCCCCCSCCCBCBCTTSSCBCC-------STTCCCCBCCEEEEEES----SCEEEEEEEC-CCCSSSBCCEEEEEE
T ss_pred             CCCCCCCCCCCCCCCEEECCCCCCCC-------CCCEECCCCCCEEEEEC----CEEEEEEECC-CCCCCCCCCEEEEEE
T ss_conf             44740388789999807789876677-------78814724336598637----6256466036-877888446899999


Q ss_pred             EEEC
Q ss_conf             7760
Q T0620           308 VGVT  311 (312)
Q Consensus       308 l~v~  311 (312)
                      ++|+
T Consensus       315 v~v~  318 (345)
T d1i9za_         315 ANIV  318 (345)
T ss_dssp             EEEE
T ss_pred             EEEE
T ss_conf             9988


No 2  
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]}
Probab=100.00  E-value=0  Score=312.89  Aligned_cols=273  Identities=21%  Similarity=0.366  Sum_probs=216.5

Q ss_pred             CCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCH------HHHHHHHHHHHHHCCC
Q ss_conf             9737999998615772770123455423210100134520578988999721478777------8999999998753178
Q T0620             2 PDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGD------REWLDLLRGGLKELTD   75 (312)
Q Consensus         2 p~~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~------~~~~~~~~~~l~~~~~   75 (312)
                      |.+++|+|+||||||++++.++..|+          .++...+|||+||||||++...      ..|.......+.   .
T Consensus         2 ~~~~~v~I~TwNv~~~~~~~~~~~~l----------~~i~~~~pDI~vI~lQE~~~~~~~~~~~~~~~~~~~~~~~---~   68 (280)
T d2imqx1           2 PAQLSVHTVSWNSGHERAPTNLEELL----------GLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLT---S   68 (280)
T ss_dssp             CSEEEEEEEEEEEETCCCCSCCHHHH----------TCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHH---H
T ss_pred             CCCEEEEEEEECCCCCCCCCCHHHHH----------CCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHC---C
T ss_conf             97259999988889973872889885----------6244689898999707368561136234899999998724---4


Q ss_pred             CEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHH
Q ss_conf             50899831475402678885253201124455132134268756687838999998482899997104778740146789
Q T0620            76 LDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQ  155 (312)
Q Consensus        76 ~~y~~~~~~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~  155 (312)
                      ..|..+...+++++|+++|+|.++....  ........+.++.++++|++.+++.+.+..+.++|+|++++.....+|..
T Consensus        69 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~in~hl~~~~~~~~~~~~  146 (280)
T d2imqx1          69 KGYTKLKNTITETMGLTVYCLEKHLDQN--TLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKY  146 (280)
T ss_dssp             TTEEEEEEEECSSEEEEEEEEGGGCCTT--TCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTSSSS
T ss_pred             CCEEEEEEEEEECEEEEEEECCCCCCCC--EECCEEEECCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCHHHHHHHH
T ss_conf             8715898610203179999726544554--00221675047755677589999999999999634567866036788988


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             99999987300034445566530046447754565454677368998730246014667665679986254114332488
Q T0620           156 NYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEE  235 (312)
Q Consensus       156 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~  235 (312)
                      +          .............++++||+||||++...................++..+++.... ....|.+|.|.+
T Consensus       147 ~----------~~~~~~~~~~~~~~~~vi~~GD~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  215 (280)
T d2imqx1         147 A----------YDTRLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAK-EQKLFDGWTEPQ  215 (280)
T ss_dssp             S----------CCGGGCTTSSSSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHH-HTTSSTTCBCCC
T ss_pred             H----------HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH-HCCHHHCCCCCC
T ss_conf             7----------77766555412677726872245444455627777664213302168999998753-212521553699


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEE
Q ss_conf             853662476487888653434567766667772301466641754403787400027767689855799997776
Q T0620           236 ISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGV  310 (312)
Q Consensus       236 i~F~ptyk~~~~~~~~~t~~~~~~~~~~~r~p~w~DRIly~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~l~v  310 (312)
                      ..|.++|++..+.+.++          ..|+|||||||||.......+++..|++++++.+|||+||+|+|+|+|
T Consensus       216 ~~ft~~~~~~~~~~~~~----------~~Rip~~iD~Il~~~~~~~~v~~~~y~~~~~~~~SDH~PV~a~F~l~~  280 (280)
T d2imqx1         216 VTFKPTYKFKPNTDEYD----------LSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL  280 (280)
T ss_dssp             CCSCCCBCBCTTSSCBC----------TTSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred             CCCCCCCCCCCCCCCCC----------CCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCHHEEEEEEEEC
T ss_conf             99897433567655678----------863676577799788668951898978889988788830699999979


No 3  
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} SCOP: d1de8a_ d1e9na_ d1dewb_ d1hd7a_ d1dewa_
Probab=99.98  E-value=4.4e-33  Score=207.52  Aligned_cols=252  Identities=16%  Similarity=0.135  Sum_probs=144.9

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             99986157727701234554232101001345205789889997214787778999999998753178508998314754
Q T0620             8 FIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLW   87 (312)
Q Consensus         8 ~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~~~   87 (312)
                      .|+||||||++.            ..+.+.+++...+|||  |||||+++.+..++..   .+...++..+.   ....+
T Consensus         2 ri~twNvng~~~------------r~~~i~~~i~~~~pDI--i~LQE~~~~~~~~~~~---~~~~~gy~~~~---~~~~~   61 (268)
T d1akoa_           2 KFVSFNINGLRA------------RPHQLEAIVEKHQPDV--IGLQETKVHDDMFPLE---EVAKLGYNVFY---HGQKG   61 (268)
T ss_dssp             EEEEEECSCGGG------------CHHHHHHHHHHHCCSE--EEEECCCCCGGGCCHH---HHHHTTCEEEE---EEETT
T ss_pred             EEEEEECCHHHH------------HHHHHHHHHHHCCCCE--EEEEEEECCHHCCCHH---HHHHCCCEEEE---ECCCC
T ss_conf             689982222788------------8999999999538999--9996554681207879---99744974998---45765


Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCEEECCCC-CCCCCCCE-EEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             026788852532011244551321342687-56687838-9999984828999971047787401467899999998730
Q T0620            88 NIKVAVLVKPEHENRISHVSTSSVKTGIAN-TLGNKGAV-GVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLS  165 (312)
Q Consensus        88 ~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~-~~~~kG~v-~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i~~~~~  165 (312)
                      +.|++|++|.++....         .++.+ .....|++ .+.+...+..+.++|+|+|++....+....++     ++.
T Consensus        62 ~~GvaIlsk~~~~~~~---------~~~~~~~~~~~~r~i~~~~~~~~~~~~i~n~y~p~~~~~~~~~~~~~-----k~~  127 (268)
T d1akoa_          62 HYGVALLTKETPIAVR---------RGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPA-----KAQ  127 (268)
T ss_dssp             EEEEEEEESSCCSEEE---------ESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHH-----HHH
T ss_pred             CCCCEEEEEECCEEEE---------ECCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHH-----HHH
T ss_conf             3540789860420032---------05555660002707899986224545898753356776542034678-----889


Q ss_pred             CCHHH-HHHHHHHHCCCCEEEECCCCCCCCCCH-----HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             00344-455665300464477545654546773-----689987302460146676656799862541143324888536
Q T0620           166 LGDRQ-LNAFDISLRFTHLFWFGDLNYRLDMDI-----QEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFP  239 (312)
Q Consensus       166 ~~~~~-~~~~~~~~~~~~v~~~GD~N~~~~~~~-----~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~  239 (312)
                      +.... ....+......++|++||||......+     ..........+. +.++        .+..+|..+.+  .+|.
T Consensus       128 ~~~~l~~~i~~~~~~~~~vIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~-~~~~--------~er~~~~~~~~--~gl~  196 (268)
T d1akoa_         128 FYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKC-SFLP--------EEREWMDRLMS--WGLV  196 (268)
T ss_dssp             HHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBT-TSCH--------HHHHHHHHHHH--TTEE
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEECCHHHHHHHHCCCCC-CCCC--------HHHHHHHHHHH--HCCC
T ss_conf             99999975333202676268863126876645300532332222005751-0031--------12346887753--1010


Q ss_pred             CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEE-ECCCCCEEEEEEEECC----CCCCCCCCCEEEEEE
Q ss_conf             62476487-88865343456776666777230146664-1754403787400027----767689855799997
Q T0620           240 PTYRYERG-SRDTYAWHKQKPTGVRTNVPSWCDRILWK-SYPETHIICNSYGCTD----DIVTSDHSPVFGTFE  307 (312)
Q Consensus       240 ptyk~~~~-~~~~~t~~~~~~~~~~~r~p~w~DRIly~-~~~~~~~~~~~y~~~~----~~~~SDH~PV~a~f~  307 (312)
                      |+||...+ ..+.||||+++.+.+.++.+.   ||||. .+++...++.++.+..    ...+|||+||.++|+
T Consensus       197 D~~r~~~p~~~~~yT~~~~~~~~~~~~~g~---RID~i~~s~~l~~~~~~~~i~~~~~~~~~~SDH~PV~~~~~  267 (268)
T d1akoa_         197 DTFRHANPQTADRFSWFDYRSKGFDDNRGL---RIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR  267 (268)
T ss_dssp             EHHHHHSTTCCSCCSBCCTTTTHHHHTCCB---CCEEEEEEHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred             EEEEECCCCCCCCEEECCCCCCCCCCCCCC---EEEEEEECHHHHHHHEEEEEECHHCCCCCCCCCEEEEEEEE
T ss_conf             022210588887267036677760467762---68779867467700102232000126777886112788860


No 4  
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.94  E-value=4.2e-25  Score=161.24  Aligned_cols=257  Identities=12%  Similarity=0.025  Sum_probs=135.0

Q ss_pred             CCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE-
Q ss_conf             9737999998615772770123455423210100134520578988999721478777899999999875317850899-
Q T0620             2 PDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRP-   80 (312)
Q Consensus         2 p~~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~-   80 (312)
                      |..+|  |+||||||++.+           .++.+.+++...+|||  |||||+++...++...+...   .++..+.. 
T Consensus        16 ~~~mk--i~S~NvnGlr~~-----------~~~~~~~~i~~~~pDI--i~LQE~k~~~~~~~~~~~~~---~~~~~~~~~   77 (275)
T d1hd7a_          16 PATLK--ICSWNVDGLRAW-----------IKKKGLDWVKEEAPDI--LCLQETKCSENKLPAELQEL---PGLSHQYWS   77 (275)
T ss_dssp             BCCEE--EEEEECSSHHHH-----------HHTTHHHHHHHHCCSE--EEEECCCCCC--------------CCCEEEEE
T ss_pred             CCCEE--EEEEEECCHHHH-----------HHCCHHHHHHHCCCCE--EEEECCCCCHHHCCHHHHHC---CCCCEEEEE
T ss_conf             87679--999982568761-----------3435899997589989--99882205823388878716---576435664


Q ss_pred             EECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             83147540267888525320112445513213426875668783899999848289999710477874014678999999
Q T0620            81 IAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDI  160 (312)
Q Consensus        81 ~~~~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i  160 (312)
                      ......+..+++++++...........        .......+. ..........+.....|..+.............. 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  147 (275)
T d1hd7a_          78 APSDKEGYSGVGLLSRQCPLKVSYGIG--------DEEHDQEGR-VIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDE-  147 (275)
T ss_dssp             CC-----CCCEEEEESSCCSEEEESCS--------CGGGSSSSC-EEEEECSSCEEEEEECCCCCGGGTTHHHHHHHHH-
T ss_pred             EECCCCCCCCCCEECCCCCEEEEECCC--------CCCCHHHHH-EEEEEECCEEEEEEEEEECCCCCCCHHHHHHHCC-
T ss_conf             320233334420121568603664233--------453022321-1245531304310245404665410133333100-


Q ss_pred             HHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             98730003444556653004644775456545467736899873024601466766567998625411433248885366
Q T0620           161 LRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPP  240 (312)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~p  240 (312)
                              ..............++++||+|.....................-.+...+..          +.+ ...|.+
T Consensus       148 --------~~~~~~~~~~~~~~~~~~gd~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~----------~l~-~~~~~D  208 (275)
T d1hd7a_         148 --------AFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGE----------LLQ-AVPLAD  208 (275)
T ss_dssp             --------HHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHHHHHHHH----------HHH-HTTCEE
T ss_pred             --------CCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCHHHHCCCCCCCCCCHHHHH----------HHC-CCCCCC
T ss_conf             --------2000010012477537611224572334404510121022222211045665----------540-367653


Q ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-ECCCCCEEEEEEEECCCCCCCCCCCEEEEEEE
Q ss_conf             24764-8788865343456776666777230146664-17544037874000277676898557999977
Q T0620           241 TYRYE-RGSRDTYAWHKQKPTGVRTNVPSWCDRILWK-SYPETHIICNSYGCTDDIVTSDHSPVFGTFEV  308 (312)
Q Consensus       241 tyk~~-~~~~~~~t~~~~~~~~~~~r~p~w~DRIly~-~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~l  308 (312)
                      +||.. +.....+|||++...++.++. +|  ||||. +++....++.++.+..+..+|||+||.++++|
T Consensus       209 ~~r~~~p~~~~~~t~~~~~~~~~~~~~-g~--RIDyi~vs~~l~~~v~~~~i~~~~~~SDH~PV~v~l~l  275 (275)
T d1hd7a_         209 SFRHLYPNTPYAYTFWTYMMNARSKNV-GW--RLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL  275 (275)
T ss_dssp             HHHHHCTTCTTCCSBCCSGGGHHHHTC-CB--CCEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEECC
T ss_pred             CEEEECCCCCCCEEECCCCCCCCCCCC-CE--EEEEEEECHHHHHHEEEEEECCCCCCCCCCCEEEEEEC
T ss_conf             202403776873023233478641899-76--75799967188612558998789999980057999979


No 5  
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.91  E-value=3.6e-23  Score=150.02  Aligned_cols=231  Identities=17%  Similarity=0.137  Sum_probs=127.5

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             99999861577277012345542321010013452057898899972147877789999999987531785089983147
Q T0620             6 SVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQS   85 (312)
Q Consensus         6 ~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~   85 (312)
                      .+.|+||||+|++.+..          ...+.+++...+|||  |||||++........     +. .....+.......
T Consensus         5 ~~kv~s~Nv~g~~~~~~----------~~~i~~~i~~~~~DI--i~LQE~~~~~~~~~~-----~~-~~~~~~~~~~~~~   66 (236)
T d1vyba_           5 HITILTLNINGLNSAIK----------RHRLASWIKSQDPSV--CCIQETHLTCRDTHR-----LK-IKGWRKIYQANGK   66 (236)
T ss_dssp             CEEEEEEECSCCCSHHH----------HHHHHHHHHHHCCSE--EEEECCCCCTTSGGG-----CC-CTTCCEEEEECCS
T ss_pred             CEEEEEEECCCCCCHHH----------HHHHHHHHHHCCCEE--EEEECCCCCCCCCHH-----HH-HCCCCEEEEEECC
T ss_conf             86999999289612455----------889999998779859--999835476232634-----54-2254048975101


Q ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCC-CEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             54026788852532011244551321342687566878-38999998482899997104778740146789999999873
Q T0620            86 LWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKG-AVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLL  164 (312)
Q Consensus        86 ~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG-~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i~~~~  164 (312)
                      ..+.|+++++|.++.....     .+.      ....| ...+.+...+..+.++|+|++++.....     .......+
T Consensus        67 ~~~~g~~i~~k~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~-----~~~~~~~~  130 (236)
T d1vyba_          67 QKKAGVAILVSDKTDFKPT-----KIK------RDKEGHYIMVKGSIQQEELTILNIYAPNTGAPRF-----IKQVLSDL  130 (236)
T ss_dssp             SSSCCEEEEECTTCCCEEE-----EEE------ECTTSSEEEEEEEETTEEEEEEEEECCSSSHHHH-----HHHHHHHT
T ss_pred             CCCCCEEEEEECCCCCCCC-----CCC------CCCCCCCEEEEEEECCCCCEEEEECCCCCCCHHH-----HHHHHHHH
T ss_conf             1222114676036521235-----642------1113431001343136762467741321220788-----87665541


Q ss_pred             CCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00034445566530046447754565454677368998730246014667665679986254114332488853662476
Q T0620           165 SLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRY  244 (312)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~ptyk~  244 (312)
                                 ......+++++||||......+..     .......  +.......         +.  ...+.++||.
T Consensus       131 -----------~~~~~~~~Il~GDfN~~~~~~d~~-----~~~~~~~--~~~~~~~~---------~~--~~~~~d~~r~  181 (236)
T d1vyba_         131 -----------QRDLDSHTLIMGDFNTPLSTLDRS-----TRQKVNK--DTQELNSA---------LH--QADLIDIYRT  181 (236)
T ss_dssp             -----------TTTCCTTEEEEEECSSCSSGGGBT-----TCCCCCH--HHHHHHHH---------HH--HTTEEEHHHH
T ss_pred             -----------CCCCCCEEEEEECCCCCCCHHHHC-----CCCCCHH--HHHHHHHH---------HH--HHHCCCCCCE
T ss_conf             -----------134432069963025554334413-----5421103--57889999---------98--6412332110


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf             487888653434567766667772301466641754403787400027767689855799997
Q T0620           245 ERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFE  307 (312)
Q Consensus       245 ~~~~~~~~t~~~~~~~~~~~r~p~w~DRIly~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~  307 (312)
                      ..+....++||....+.     .++.|||+  +++....++..+.+.+. ..|||+||.+.++
T Consensus       182 ~~~~~~~~~~~~~~~~~-----~~RiD~il--~s~~~~~~~~~~~i~~~-~~SDH~pv~~~lk  236 (236)
T d1vyba_         182 LHPKSTEYTFFSAPHHT-----YSKIDHIV--GSKALLSKCKRTEIITN-YLSDHSAIKLELR  236 (236)
T ss_dssp             HCTTCCCCSEEETTTTE-----EECCEEEE--EEGGGGGGEEEEEEECC-SSSSSCEEEEEEC
T ss_pred             ECCCCCCCCCCCCCCCC-----CCEEEEEE--ECHHHHHHCEEEEECCC-CCCCCCCEEEEEC
T ss_conf             01478643332788997-----76367999--87189722408998999-7998101899959


No 6  
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]}
Probab=99.90  E-value=4.9e-22  Score=143.45  Aligned_cols=173  Identities=17%  Similarity=0.086  Sum_probs=96.3

Q ss_pred             CEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCE-----
Q ss_conf             737999998615772770123455423210100134520578988999721478777899999999875317850-----
Q T0620             3 DMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLD-----   77 (312)
Q Consensus         3 ~~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~-----   77 (312)
                      ++||  |+||||..+..+  +.++-....+.+.+.+.+...+|||  |||||+.....  .+.+...+.......     
T Consensus         2 ~tl~--v~s~Nv~~~~~~--~~~~~~~~~r~~~i~~~i~~~~~DI--i~LQEv~~~~~--~~~~~~~l~~~~~~~~~~~~   73 (299)
T d2ddra1           2 DTLK--VMTHNVYMLSTN--LYPNWGQTERADLIGAADYIKNQDV--VILNEVFDNSA--SDRLLGNLKKEYPNQTAVLG   73 (299)
T ss_dssp             CEEE--EEEEEEEECCTT--TCTTSCHHHHHHHHHHCSTTCSCSE--EEEEEECCHHH--HHHHHHHHTTTCCEECCCTT
T ss_pred             CCEE--EEEEECCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCCCH--HHHHHHHHHHHCCCEEEECC
T ss_conf             9669--998778846546--6887278899999999987569988--99992677652--78888888875674033213


Q ss_pred             ----------EEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCC
Q ss_conf             ----------8998314754026788852532011244551321342687566878389999984828999971047787
Q T0620            78 ----------YRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGN  147 (312)
Q Consensus        78 ----------y~~~~~~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~  147 (312)
                                +...........|+++++|.+..........   ..+.......++++.+.....+..++++|+|++++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~  150 (299)
T d2ddra1          74 RSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFA---KGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAED  150 (299)
T ss_dssp             SCCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEEEEEECS---CCC----CCCCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred             CCCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCEEEEEE---CCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCC
T ss_conf             45555554023012343102641699998611131345531---135755434206999998069808999972466787


Q ss_pred             CCHHH------HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             40146------789999999873000344455665300464477545654546
Q T0620           148 EKTAR------RNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLD  194 (312)
Q Consensus       148 ~~~~~------R~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~  194 (312)
                      ....+      |..+...+...        ........+.++|+|||||.+..
T Consensus       151 ~~~~~~~~~~~r~~q~~~~~~~--------~~~~~~~~~~~vi~~GDfN~~~~  195 (299)
T d2ddra1         151 SMCGKTSPASVRTNQLKEIQDF--------IKNKNIPNNEYVLIGGDMNVNKI  195 (299)
T ss_dssp             ------CHHHHHHHHHHHHHHH--------HHHHTCCTTSCEEEEEECCCCCT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH--------HHHHCCCCCCEEEEEECCCCCCC
T ss_conf             7531024688999999987656--------55420256651799723788865


No 7  
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]}
Probab=99.89  E-value=4.8e-22  Score=143.52  Aligned_cols=174  Identities=17%  Similarity=0.160  Sum_probs=96.7

Q ss_pred             CCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCE----
Q ss_conf             9737999998615772770123455423210100134520578988999721478777899999999875317850----
Q T0620             2 PDMISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLD----   77 (312)
Q Consensus         2 p~~l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~----   77 (312)
                      |+.|||  +||||...+..  +.+......+.+.+...+...+|||  |||||+.....  .+.+...+.......    
T Consensus         2 ~~~lki--~s~Nv~~~~~~--~~~~~~~~~r~~~i~~~i~~~~~DV--i~LQEv~~~~~--~~~l~~~~~~~~~~~~~~~   73 (293)
T d1zwxa1           2 PGNFKI--TSHNVYLFSRN--IYPNWGQMHRADLIAQADYMKNNDV--VILNEAFDTSA--SHRLLNNLREMYPHQTPVI   73 (293)
T ss_dssp             CCSCEE--EEEEEEECCTT--TSTTSCHHHHHHHHHTSGGGSSCSE--EEEEEECSHHH--HHHHHHHTTTTCCEECCCT
T ss_pred             CCCCEE--EEEECCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCCCH--HHHHHHHHHHHCCCEEHHC
T ss_conf             997789--98846857655--5898278999999999997569988--99984677425--8999987765414000001


Q ss_pred             ----------EEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCC
Q ss_conf             ----------8998314754026788852532011244551321342687566878389999984828999971047787
Q T0620            78 ----------YRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGN  147 (312)
Q Consensus        78 ----------y~~~~~~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~  147 (312)
                                +...........|+++++|.++.........   ..+.......+|.+.+.+...+..+.++|+||+++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~g~~ilsr~pi~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~  150 (293)
T d1zwxa1          74 GRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQ---RGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADD  150 (293)
T ss_dssp             TSCSTTCSEEEC-----CCBCCCCEEEESSCEEEEEEEECS---CCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEE---CCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCC
T ss_conf             13454322111454432012662699964675442156520---245420013414899999639934799984410367


Q ss_pred             CCHHHH------HHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             401467------89999999873000344455665300464477545654546
Q T0620           148 EKTARR------NQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLD  194 (312)
Q Consensus       148 ~~~~~R------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~  194 (312)
                      ......      ..+...+...+        .........++|++||||....
T Consensus       151 ~~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~~~~vil~GDfN~~~~  195 (293)
T d1zwxa1         151 SLISKDTSRAIRAEQMQEIQTFI--------AKKNIPKDEIIFIGGDLNVNYG  195 (293)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHH--------HHHTCCTTSEEEEEEECCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH--------HHHCCCCCCCEEEEEECCCCCC
T ss_conf             75303577999999898865455--------5403688984899806698988


No 8  
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Probab=99.84  E-value=7.7e-20  Score=130.70  Aligned_cols=225  Identities=16%  Similarity=0.080  Sum_probs=118.1

Q ss_pred             EEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             79999986157727701234554232101001345205789889997214787778999999998753178508998314
Q T0620             5 ISVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQ   84 (312)
Q Consensus         5 l~v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~   84 (312)
                      ||  |+||||++.+..            ...+...+...+|||  +||||++......       +....+..+......
T Consensus         3 ~r--V~~~Nv~~~~~~------------~~~l~~~i~~~~~DI--i~lQE~~~~~~~~-------~~~~~~~~~~~~~~~   59 (228)
T d1wdua_           3 YR--VLQANLQRKKLA------------TAELAIEAATRKAAI--ALIQEPYVGGAKS-------MKGFRGVRVFQSTAQ   59 (228)
T ss_dssp             EE--EEEEECTTCHHH------------HHHHHHHHHHHTCSE--EEEESCCC-------------CCCSSCEEEECCCC
T ss_pred             EE--EEEECCCCCHHH------------HHHHHHHHHHCCCCE--EEEECCCCCCCCC-------CCCCCCEEEEECCCC
T ss_conf             78--994203997678------------999999997369978--9998787489885-------311362378834577


Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             75402678885253201124455132134268756687838999998482899997104778740146789999999873
Q T0620            85 SLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLL  164 (312)
Q Consensus        85 ~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~~~R~~~~~~i~~~~  164 (312)
                      ..++.|++++++++.......           ......+.+.+.+...+..++++|+|+|.+... +.....+..+    
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~-~~~~~~l~~~----  123 (228)
T d1wdua_          60 GDGTVKAAIAVFDHDLDVIQY-----------PQLTTNNIVVVGIRTRAWEITLVSYYFEPDKPI-ESYLEQIKRV----  123 (228)
T ss_dssp             TTCCCCEEEEECCSSCEEEEC-----------TTTCCSSEEEEEEECSSCEEEEEEEECCTTSCS-HHHHHHHHHH----
T ss_pred             CCCCCCEEEEEECCCCCEECC-----------CCCCCCCEEEEEEECCCCCEEEEEEEECCCCCC-HHHHHHHHHH----
T ss_conf             898762599998146404504-----------677889979999982880289999981874310-6899999999----


Q ss_pred             CCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00034445566530046447754565454677368998730246014667665679986254114332488853662476
Q T0620           165 SLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRY  244 (312)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~ptyk~  244 (312)
                                .......+++++||||.....-       . ......  ....+........ +   ..           
T Consensus       124 ----------~~~~~~~~vIi~GDfN~~~~~~-------~-~~~~~~--~~~~l~~~~~~~~-~---~~-----------  168 (228)
T d1wdua_         124 ----------ERKMGPKRLIFGGDANAKSTWW-------G-SKEDDA--RGDQLMGTLGELG-L---HI-----------  168 (228)
T ss_dssp             ----------HHTTCSSSEEEEEECCCCCGGG-------T-CSSCCH--HHHHHHHHHHHHT-C---EE-----------
T ss_pred             ----------HHHCCCCEEEEECCCCCCCHHH-------H-CCCCHH--HHHHHHHHHHHHC-C---CC-----------
T ss_conf             ----------8745895399922535575667-------3-243205--7899999998607-5---31-----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEE
Q ss_conf             48788865343456776666777230146664175440378740002776768985579999777
Q T0620           245 ERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVG  309 (312)
Q Consensus       245 ~~~~~~~~t~~~~~~~~~~~r~p~w~DRIly~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~l~  309 (312)
                       ......++|+.....   .+.++++|+|++  ++....++.++.+.++..+|||.||.++++++
T Consensus       169 -~~~~~~~~~~~~~~~---~~~~~rID~~~~--s~~l~~~v~~~~v~~~~~~SDH~~v~~~l~~~  227 (228)
T d1wdua_         169 -LNEGDVPTFDTIRGG---KRYQSRVDVTFC--TEDMLDLIDGWRVDEDLVSSDHNGMVFNIRLQ  227 (228)
T ss_dssp             -CCCSCCCSEEC--------CCEECCEEEEE--CGGGBTTEEEEEECTTSSSSSBCCEEEEECCC
T ss_pred             -CCCCCCCCCCCCCCC---CCCCCCEEEEEE--CCHHHHHCEEEEECCCCCCCCCHHEEEEEEEE
T ss_conf             -125773220035678---788854489997--80586213599998999999935769999971


No 9  
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}
Probab=99.83  E-value=5.3e-19  Score=125.86  Aligned_cols=253  Identities=15%  Similarity=0.099  Sum_probs=116.0

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             99986157727701234554232101001345205789889997214787778999999998753178508998314754
Q T0620             8 FIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLW   87 (312)
Q Consensus         8 ~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~~~   87 (312)
                      .|+||||||++.            +.+.+.+++...+|||  |||||+++.+..+....   +...++.. ..... ...
T Consensus         2 ki~S~NvnG~r~------------r~~~i~~~i~~~~~DI--i~LQEv~~~~~~~~~~~---~~~~~~~~-~~~~~-~~~   62 (268)
T d1akoa_           2 KFVSFNINGLRA------------RPHQLEAIVEKHQPDV--IGLQETKVHDDMFPLEE---VAKLGYNV-FYHGQ-KGH   62 (268)
T ss_dssp             EEEEEECSCGGG------------CHHHHHHHHHHHCCSE--EEEECCCCCGGGCCHHH---HHHTTCEE-EEEEE-TTE
T ss_pred             EEEEEEECCHHH------------HHHHHHHHHHHCCCCE--EEEEEEECCHHHCCHHH---HHHCCCEE-EECCC-CCC
T ss_conf             899998079998------------4998999998779988--99985656811199888---86569625-53144-344


Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCH-HHHHHHHHHHHHHHCC
Q ss_conf             026788852532011244551321342687566878389999984828999971047787401-4678999999987300
Q T0620            88 NIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKT-ARRNQNYLDILRLLSL  166 (312)
Q Consensus        88 ~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~~-~~R~~~~~~i~~~~~~  166 (312)
                      ..+.....+...........        ....................+.++..+...+.... ..+.........    
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  130 (268)
T d1akoa_          63 YGVALLTKETPIAVRRGFPG--------DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQ----  130 (268)
T ss_dssp             EEEEEEESSCCSEEEESSTT--------CCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHH----
T ss_pred             CCCCCCCCCCCHHCCCCCCC--------CCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHH----
T ss_conf             33432112354000147400--------112354321000000136874799831015786310023167788999----


Q ss_pred             CHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHH-----HH--HHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             034445566530046447754565454677368-----99--87302460146676656799862541143324888536
Q T0620           167 GDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQE-----IL--NYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFP  239 (312)
Q Consensus       167 ~~~~~~~~~~~~~~~~v~~~GD~N~~~~~~~~~-----~~--~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~e~~i~F~  239 (312)
                       .................+++++|......+..     ..  .......+..  .         ....+..+.+  ..+.
T Consensus       131 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~--~~~~  196 (268)
T d1akoa_         131 -NLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLP--E---------EREWMDRLMS--WGLV  196 (268)
T ss_dssp             -HHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCH--H---------HHHHHHHHHH--TTEE
T ss_pred             -HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCH--H---------HHHHHHHHHC--CCCC
T ss_conf             -999999987623886788740113763544432231241000246667898--9---------9999999970--8873


Q ss_pred             CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEC----CCCCCCCCCCEEEEEE
Q ss_conf             62476487-88865343456776666777230146664175440378740002----7767689855799997
Q T0620           240 PTYRYERG-SRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCT----DDIVTSDHSPVFGTFE  307 (312)
Q Consensus       240 ptyk~~~~-~~~~~t~~~~~~~~~~~r~p~w~DRIly~~~~~~~~~~~~y~~~----~~~~~SDH~PV~a~f~  307 (312)
                      ++|+...+ ....++|+..+..++.++.+.++|+|++  +++...++.++.+.    ....+|||+||+|+|+
T Consensus       197 D~~~~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyI~~--s~~l~~~~~~~~i~~~~~~~~~~SDH~PV~a~~~  267 (268)
T d1akoa_         197 DTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLA--SQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR  267 (268)
T ss_dssp             EHHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEE--EHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred             CEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE--CHHHHHHHEEEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf             3010117876665413577666531799617789996--7289543149999421028999997225799997


No 10 
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.72  E-value=3.7e-17  Score=115.16  Aligned_cols=167  Identities=14%  Similarity=0.132  Sum_probs=73.8

Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECC--
Q ss_conf             999986157727701234554232101001345205789889997214787778999999998753178508998314--
Q T0620             7 VFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQ--   84 (312)
Q Consensus         7 v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~--   84 (312)
                      +.|+||||+++...+...     ......+.+.+  .+|||  |||||++.........+...+.......+......  
T Consensus         1 lrI~s~Ni~~~~~~~~~~-----~~~~~~l~~~i--~~~DI--i~LQEv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   71 (260)
T d2a40b1           1 LKIAAFNIRTFGETKMSN-----ATLASYIVRIV--RRYDI--VLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPL   71 (260)
T ss_dssp             CEEEEEEEEEESHHHHHS-----HHHHHHHHHHH--TTCSE--EEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCB
T ss_pred             CEEEEEECCCCCCCCCCC-----HHHHHHHHHHC--CCCCE--EEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             989999688347786665-----99999999874--79998--9999623477416999998643114675036741567


Q ss_pred             --CCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEC---CEEEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             --754026788852532011244551321342687566878389999984---828999971047787401467899999
Q T0620            85 --SLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFN---GTSFGFVNCHLTSGNEKTARRNQNYLD  159 (312)
Q Consensus        85 --~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~---~~~i~~in~hl~a~~~~~~~R~~~~~~  159 (312)
                        ...+.+.+++.+....................................   ...+.+++.|+....  ...|......
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  149 (260)
T d2a40b1          72 GRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSD--AVAEINSLYD  149 (260)
T ss_dssp             CSSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGG--HHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCCEECCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCH--HHHHHHHHHH
T ss_conf             77754310025412544201112000135556765433323102121103456247999864155430--3688888999


Q ss_pred             HHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             99873000344455665300464477545654546
Q T0620           160 ILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLD  194 (312)
Q Consensus       160 i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~~~  194 (312)
                      +.+.+          .......+++++||||....
T Consensus       150 ~~~~~----------~~~~~~~~~iv~GDfN~~~~  174 (260)
T d2a40b1         150 VYLDV----------QQKWHLNDVMLMGDFNADCS  174 (260)
T ss_dssp             HHHHH----------HHHHCCCCEEEEEECCCSTT
T ss_pred             HHHHH----------HHHCCCCCEEECCCCCCCCC
T ss_conf             99999----------86345788797665567865


No 11 
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]}
Probab=99.66  E-value=3.1e-16  Score=109.83  Aligned_cols=155  Identities=13%  Similarity=0.128  Sum_probs=71.6

Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC------------
Q ss_conf             99998615772770123455423210100134520578988999721478777899999999875317------------
Q T0620             7 VFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELT------------   74 (312)
Q Consensus         7 v~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~------------   74 (312)
                      +.|+||||++...... ..|-.     .....+....++||  |||||++......... ...+...+            
T Consensus         5 ~rv~TwNi~~~~~~~~-~~~~~-----~~~~~~~~~~~~DV--l~lQEv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   75 (250)
T d2f1na1           5 FRVATWNLQGASATTE-SKWNI-----NVRQLISGENAVDI--LAVQEAGSPPSTAVDT-GRVIPSPGIPVRELIWNLST   75 (250)
T ss_dssp             CCEEEEEEEECTTSCH-HHHHT-----HHHHHHSSTTCCSE--EEEEEECSCCTTCEEC-CCCCCCSSCCCEEEEEECCS
T ss_pred             CEEEEEECCCCCCCCC-CCCHH-----HHHHHHHHCCCCCE--EEEECCCCCCCCCHHH-HHHHHHCCCCCEEEEECCCC
T ss_conf             8999994797757655-65559-----99999986689899--9998268633433667-65443027642002321344


Q ss_pred             ----CCEEEEE--ECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCC
Q ss_conf             ----8508998--3147540267888525320112445513213426875668783899999848289999710477874
Q T0620            75 ----DLDYRPI--AMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNE  148 (312)
Q Consensus        75 ----~~~y~~~--~~~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~  148 (312)
                          ...|...  .....+..|+++++|.++......         ...  ....+..+...+  ..+.++|+|++++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~g~~i~s~~~~~~~~~~---------~~~--~~~~r~~~~~~~--~~~~v~n~Hl~~~~~  142 (250)
T d2f1na1          76 NSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVL---------SPV--RQGGRPLLGIRI--GNDAFFTAHAIAMRN  142 (250)
T ss_dssp             SSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEEEEE---------CCS--STTCCCEEEEEE--TTEEEEEEECCSSSS
T ss_pred             CCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEEC---------CCC--CCCCCCEEEEEE--CEEEEEEEECCCCCC
T ss_conf             5676326787511454465714599988753056751---------787--542211036763--208999998189995


Q ss_pred             CHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             0146-7899999998730003444556653004644775456545
Q T0620           149 KTAR-RNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYR  192 (312)
Q Consensus       149 ~~~~-R~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~  192 (312)
                      .... +.+....+.+.         .........+++++||||..
T Consensus       143 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~iv~GDfN~~  178 (250)
T d2f1na1         143 NDAPALVEEVYNFFRD---------SRDPVHQALNWMILGDFNRE  178 (250)
T ss_dssp             CSHHHHHHHHHHHHHT---------CSSHHHHTCEEEEEEECSSC
T ss_pred             HHHHHHHHHHHHHHHH---------HHHHHCCCCCEEEECCCCCC
T ss_conf             6599999999999999---------87641468866873455768


No 12 
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]}
Probab=99.58  E-value=7.1e-15  Score=101.92  Aligned_cols=158  Identities=12%  Similarity=0.080  Sum_probs=70.0

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCC--EEEEE----
Q ss_conf             999861577277012345542321010013452057898899972147877789999999987531785--08998----
Q T0620             8 FIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDL--DYRPI----   81 (312)
Q Consensus         8 ~i~TwNVng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~Di~vi~lQE~~~~~~~~~~~~~~~l~~~~~~--~y~~~----   81 (312)
                      .|+||||++.....+- .|-     ......++...+|||  |||||++........ ........+..  .|...    
T Consensus         6 rv~TwNi~~~~~~~~~-~~~-----~~~~~~~~~~~~~DI--i~LQEv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   76 (261)
T d1sr4b_           6 KVATWNLQGSSAVNES-KWN-----INVRQLLSGEQGADI--LMVQEAGSLPSSAVR-TSRVIQHGGTPIEEYTWNLGTR   76 (261)
T ss_dssp             CEEEEECCCCSSSSHH-HHH-----HHHHHHHCSTTCCSE--EEEESCCSCCTTCEE-CSCCCCCSSSCCEEEEEESSCS
T ss_pred             EEEEEECCCCCCCCCC-CCC-----HHHHHHHHHCCCCCE--EEEECCCCCCCCCHH-HHHHHHHHCCCCEEEEECCCCC
T ss_conf             8999967968787555-544-----899999985579998--999856754563267-9988765076511443114666


Q ss_pred             ------------ECCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCC
Q ss_conf             ------------31475402678885253201124455132134268756687838999998482899997104778740
Q T0620            82 ------------AMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK  149 (312)
Q Consensus        82 ------------~~~~~~~~gv~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kG~v~i~~~~~~~~i~~in~hl~a~~~~  149 (312)
                                  ........|++++++.++.......         .+.....++.++...+..  ..+++.|+.+....
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~g~~~ls~~~~~~~~~~~---------~~~~~~~~r~~~~~~~~~--~~~~~~~~~~~~~~  145 (261)
T d1sr4b_          77 SRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVH---------SDSSVLQSRPAVGIRIGT--DVFFTVHALATGGS  145 (261)
T ss_dssp             SSCCEEEEEEECCCTTTSCSCEEEEESSCCSEEEEEC---------CCCCSSCCCCEEEEEETT--EEEEEEECCTTTTT
T ss_pred             CCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCEECC---------CCCCCCCCCEEEEEEEEC--CCCEEEEEEECCCC
T ss_conf             6775368995044334530125999688750104536---------887666652279999841--55147999614775


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             1467899999998730003444556653004644775456545
Q T0620           150 TARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYR  192 (312)
Q Consensus       150 ~~~R~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~GD~N~~  192 (312)
                      ....  ........+.     ...........+++++||||..
T Consensus       146 ~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~iv~GDfN~~  181 (261)
T d1sr4b_         146 DAVS--LIRNIFTTFN-----SSSSPPERRVYSWMVVGDFNRA  181 (261)
T ss_dssp             THHH--HHHHHHHHHH-----C---CGGGGGCEEEEEEECSSC
T ss_pred             CCHH--HHHHHHHHHH-----HHHHHHHCCCCCEEEEEECCCC
T ss_conf             1279--9999999999-----9999863569977996332767


Done!