Query T0621 3NKG, , 172 residues
Match_columns 172
No_of_seqs 5 out of 7
Neff 2.1
Searched_HMMs 15564
Date Thu Jul 22 14:52:28 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0621.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0621.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bmfa1 c.37.1.14 (A:483-618) 30.1 1.7 0.00011 21.9 -2.7 49 110-158 8-56 (136)
2 d2ct5a1 g.37.1.6 (A:8-67) Zinc 20.8 9.9 0.00063 17.3 -0.2 13 51-63 2-14 (60)
3 d1i7na1 c.30.1.5 (A:113-214) S 12.7 44 0.0028 13.4 1.4 16 141-157 26-41 (102)
4 d1acca_ f.11.1.1 (A:) Anthrax 12.0 50 0.0032 13.0 3.0 15 135-149 92-107 (722)
5 d1kmta_ b.1.18.8 (A:) Rho GDP- 11.7 44 0.0028 13.4 1.1 49 2-53 19-69 (138)
6 d1s6la1 a.4.5.79 (A:21-80) Alk 10.8 32 0.002 14.2 0.2 25 79-103 35-59 (60)
7 d1oo2a_ b.3.4.1 (A:) Transthyr 9.7 60 0.0038 12.6 5.9 60 97-160 19-78 (116)
8 d1g7sa3 c.20.1.1 (A:329-459) I 9.4 17 0.0011 15.8 -1.6 39 6-44 46-89 (131)
9 d1g7sa3 c.20.1.1 (A:329-459) I 9.0 18 0.0012 15.7 -1.6 39 6-44 46-89 (131)
10 d2f23a2 d.26.1.2 (A:78-156) Gr 8.9 55 0.0035 12.8 0.8 54 53-106 25-78 (79)
No 1
>d2bmfa1 c.37.1.14 (A:483-618) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=30.11 E-value=1.7 Score=21.94 Aligned_cols=49 Identities=18% Similarity=0.353 Sum_probs=43.8
Q ss_pred CEEEEEEEEEEECCCCCCHHHHHHHHEECCCCEEEEEEECCHHHHHHHC
Q ss_conf 4012223335544777501122342100034807999840102355515
Q T0621 110 TKKLIADNLYMTKGNGSGAYTRDITTISLDKGKYIFRIENIEAFSEMIG 158 (172)
Q Consensus 110 t~k~i~d~ly~t~~~g~~~~~r~i~~i~L~kGKY~i~VEt~eaf~Em~~ 158 (172)
+-+|+.||+.+.+|.-...|.-|-...+-..|.||.+-|--+-|-|+..
T Consensus 8 EAqmLLDNi~~~~g~va~~ygpE~~K~~~~~G~fRL~~E~RK~F~~Ll~ 56 (136)
T d2bmfa1 8 EAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMR 56 (136)
T ss_dssp HHHHHHTTCCCTTCCCCCCCGGGSTTCCCCTTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCEECCCCHHHCCCCCCCEEECCHHHHHHHHHHHH
T ss_conf 9999887435878741001260120456899546637355799999986
No 2
>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.82 E-value=9.9 Score=17.30 Aligned_cols=13 Identities=38% Similarity=1.170 Sum_probs=10.5
Q ss_pred HHHHHHCCCCCCC
Q ss_conf 7877613222473
Q T0621 51 RVWKFLGFNSYDP 63 (172)
Q Consensus 51 ~v~k~~G~~~~~p 63 (172)
.||+||||.+.+.
T Consensus 2 ~vW~YFGF~~~~~ 14 (60)
T d2ct5a1 2 KVWKYFGFDTNAE 14 (60)
T ss_dssp CTTSSSCCCCCSS
T ss_pred CHHHHCCCCCCCC
T ss_conf 3324137458999
No 3
>d1i7na1 c.30.1.5 (A:113-214) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.66 E-value=44 Score=13.38 Aligned_cols=16 Identities=44% Similarity=0.787 Sum_probs=10.0
Q ss_pred CEEEEEEECCHHHHHHH
Q ss_conf 80799984010235551
Q T0621 141 GKYIFRIENIEAFSEMI 157 (172)
Q Consensus 141 GKY~i~VEt~eaf~Em~ 157 (172)
|-|-||||-.| |+|++
T Consensus 26 g~ydIrVEQAe-Fsein 41 (102)
T d1i7na1 26 GDYDIKVEQAE-FSELN 41 (102)
T ss_dssp TTEEEEEEEEC-GGGEE
T ss_pred CCEEEEEEEEC-CEEEE
T ss_conf 83789998851-10579
No 4
>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]}
Probab=11.99 E-value=50 Score=13.03 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=11.3
Q ss_pred HEECCCC-EEEEEEEC
Q ss_conf 1000348-07999840
Q T0621 135 TISLDKG-KYIFRIEN 149 (172)
Q Consensus 135 ~i~L~kG-KY~i~VEt 149 (172)
.+.|++| .|.|+||=
T Consensus 92 ~V~LekGk~Y~IrIEY 107 (722)
T d1acca_ 92 KIRLEKGRLYQIKIQY 107 (722)
T ss_dssp CEEECTTCEEEEEEEE
T ss_pred EEEEECCCEEEEEEEE
T ss_conf 1898579788899998
No 5
>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.67 E-value=44 Score=13.38 Aligned_cols=49 Identities=18% Similarity=0.334 Sum_probs=31.9
Q ss_pred CCCE--EEECCCCCCCCEEEEEEECCCCEEEEEEEEEEEEHHHHCCCCCHHHHH
Q ss_conf 9853--643043324651121331340146777787300011110350056787
Q T0621 2 PNPI--SIPIDLSQAGSVVEKEVKIEESWSYHLILQFAVHDRKEDGGLDGKRVW 53 (172)
Q Consensus 2 p~P~--tiPIDlSkAGsvvE~eirI~E~~~y~~~l~f~~r~rk~~g~~dg~~v~ 53 (172)
|.|+ .+|.|+++. -..-|.|.|--.|.+-+.|.+..+--+|=++-..++
T Consensus 19 P~~i~ldl~~~l~~l---k~~~f~IKEGs~Y~i~i~F~V~~eivsGLky~q~v~ 69 (138)
T d1kmta_ 19 PGPLELDLTGDLESF---KKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 69 (138)
T ss_dssp SSCCEEETTSCGGGG---GGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CCCEEECCCCCHHHH---CCCCEEECCCCEEEEEEEEEECCCCCCCCEEEEEEE
T ss_conf 998777588764572---478789358978999999999451124848999999
No 6
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=10.82 E-value=32 Score=14.21 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=18.7
Q ss_pred HHHHHHCCCCCCCCCEEEEEEEEEE
Q ss_conf 1110000135677740564454201
Q T0621 79 SELGDLIDETYDCDGTVVPIKITIH 103 (172)
Q Consensus 79 ~~~~~~i~~t~~~~gTvipikltI~ 103 (172)
.-|..+.++-||++|.|+---||..
T Consensus 35 ~aL~~~p~tEyD~~G~ivG~GLTLR 59 (60)
T d1s6la1 35 AVLEQATSTEYDKDGNIIGYGLTLR 59 (60)
T ss_dssp HHHTTCCSSCEETTTEECCCCSSSS
T ss_pred HHHHHCCCCEECCCCCEEEEEEEEC
T ss_conf 9998588861668997885530015
No 7
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead seabream (Sparus aurata) [TaxId: 8175]}
Probab=9.75 E-value=60 Score=12.56 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=39.3
Q ss_pred EEEEEEEHHHCCCCEEEEEEEEEEECCCCCCHHHHHHHHEECCCCEEEEEEECCHHHHHHHCCC
Q ss_conf 4454201111257401222333554477750112234210003480799984010235551582
Q T0621 97 PIKITIHQINQDNTKKLIADNLYMTKGNGSGAYTRDITTISLDKGKYIFRIENIEAFSEMIGRK 160 (172)
Q Consensus 97 pikltI~qI~~~nt~k~i~d~ly~t~~~g~~~~~r~i~~i~L~kGKY~i~VEt~eaf~Em~~~~ 160 (172)
-+++++.++..++..++|... .|+..|+-. -.+..-++..|.|.++.++-+=|.++...+
T Consensus 19 gv~V~L~~~~~~g~~~~i~~~--~Td~dGRi~--~~~~~~~~~~G~Yel~F~~~~YF~~~~~~~ 78 (116)
T d1oo2a_ 19 SVALKVSQKTADGGWTQIATG--VTDATGEIH--NLITEQQFPAGVYRVEFDTKAYWTNQGSTP 78 (116)
T ss_dssp TCEEEEEEECTTSCEEEEEEE--ECCTTSCCT--TCSCGGGCCSEEEEEEECHHHHHHHTTCCC
T ss_pred CCEEEEEEECCCCCEEEEEEE--EECCCCCCC--CCCCCCCCCCEEEEEEEEHHHHHHHCCCCC
T ss_conf 998999998899981898999--978998686--646745456801999998489898609998
No 8
>d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=9.39 E-value=17 Score=15.84 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=29.6
Q ss_pred EEECCCCCCCCEEEEEEECCCCE-----EEEEEEEEEEEHHHHC
Q ss_conf 64304332465112133134014-----6777787300011110
Q T0621 6 SIPIDLSQAGSVVEKEVKIEESW-----SYHLILQFAVHDRKED 44 (172)
Q Consensus 6 tiPIDlSkAGsvvE~eirI~E~~-----~y~~~l~f~~r~rk~~ 44 (172)
.+||-.+..|.|.++||..-+.. .++++|+|.+.-....
T Consensus 46 ~i~I~~~~vG~vt~~DV~~A~~~~~~~~~~a~IlgFnV~~~~~a 89 (131)
T d1g7sa3 46 YVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSA 89 (131)
T ss_dssp TCCCSEEEESSBCHHHHHHHHHHHTTCTTSCEEEEESCCBCHHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHH
T ss_conf 65347753006767788877764213645507888418888899
No 9
>d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=8.97 E-value=18 Score=15.67 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=28.6
Q ss_pred EEECCCCCCCCEEEEEEECCCCE-----EEEEEEEEEEEHHHHC
Q ss_conf 64304332465112133134014-----6777787300011110
Q T0621 6 SIPIDLSQAGSVVEKEVKIEESW-----SYHLILQFAVHDRKED 44 (172)
Q Consensus 6 tiPIDlSkAGsvvE~eirI~E~~-----~y~~~l~f~~r~rk~~ 44 (172)
.+||=.+.-|.+.|+||..-..- .++++++|.++--...
T Consensus 46 ~i~i~~~~VG~it~~DV~~A~~~~~~~~~~a~IlgFnV~~~~~a 89 (131)
T d1g7sa3 46 YVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSA 89 (131)
T ss_dssp TCCCSEEEESSBCHHHHHHHHHHHTTCTTSCEEEEESCCBCHHH
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCHH
T ss_conf 75168865746645168899874214766718999851469216
No 10
>d2f23a2 d.26.1.2 (A:78-156) GreA transcript cleavage factor, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=8.86 E-value=55 Score=12.79 Aligned_cols=54 Identities=11% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEHHH
Q ss_conf 776132224734571555204100011110000135677740564454201111
Q T0621 53 WKFLGFNSYDPRDGKQVGYVDYRLAKSELGDLIDETYDCDGTVVPIKITIHQIN 106 (172)
Q Consensus 53 ~k~~G~~~~~p~ngk~~~~~~~~~a~~~~~~~i~~t~~~~gTvipikltI~qI~ 106 (172)
+++.|..+-||.+|..+-=..+-++++++|--+.++-+.+----.++++|..|+
T Consensus 25 ~~lVg~~e~d~~~~~~~IS~~SPlG~ALlGk~~Gd~v~v~~p~g~~~~~Il~I~ 78 (79)
T d2f23a2 25 VQVVSPAEANVLDTPMKISDASPMGKALLGHRVGDVLSLDTPKGKREFRVVAIH 78 (79)
T ss_dssp EEEECGGGCBTTSSSEEEETTSHHHHHHTTCCTTCEEEEEETTEEEEEEEEEEE
T ss_pred EEEECHHHCCCCCCCCEECCCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEE
T ss_conf 999791570723496174366988999748999999999859987999999998
Done!