Query T0623 3NKH, , 220 residues
Match_columns 220
No_of_seqs 108 out of 7094
Neff 9.9
Searched_HMMs 22458
Date Thu Jul 22 15:09:08 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0623.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0623.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a3v_A Site-specific recombina 100.0 6.8E-29 3E-33 186.5 10.6 183 1-217 105-320 (320)
2 1aih_A HP1 integrase; DNA inte 99.9 7E-27 3.1E-31 174.7 11.7 156 1-212 6-161 (170)
3 1a0p_A Site-specific recombina 99.9 2.2E-25 9.9E-30 166.0 10.5 160 29-211 129-289 (290)
4 1z1b_A Integrase; protein-DNA 99.9 2.8E-24 1.2E-28 159.6 12.0 165 1-203 179-346 (356)
5 1z19_A Integrase; protein-DNA 99.9 1.5E-22 6.6E-27 149.5 10.4 165 1-203 106-273 (283)
6 1xo0_A Recombinase CRE; CRE re 99.9 1.3E-21 5.7E-26 144.1 13.5 173 31-216 139-322 (324)
7 1ae9_A Lambda integrase; DNA r 99.9 1.7E-22 7.4E-27 149.2 5.2 165 1-203 3-170 (179)
8 2f4q_A Type I topoisomerase, p 97.8 0.00032 1.4E-08 42.7 11.0 138 32-202 123-292 (346)
9 2v6e_A Protelemorase; hairpin 97.6 0.0017 7.6E-08 38.4 12.2 149 33-202 282-448 (558)
10 2h7g_X DNA topoisomerase 1; ty 96.8 0.0075 3.3E-07 34.7 8.6 131 32-202 116-277 (314)
11 2b9s_A Topoisomerase I-like pr 82.2 2.1 9.5E-05 20.4 9.6 107 32-175 276-395 (432)
12 1jko_C HIN recombinase, DNA-in 42.7 14 0.00062 15.6 4.4 41 157-201 3-43 (52)
13 2waq_H DNA-directed RNA polyme 41.6 8.8 0.00039 16.8 1.6 45 2-55 23-67 (84)
14 1hmj_A RPB5, protein (subunit 38.4 9.1 0.00041 16.7 1.3 46 2-56 15-60 (78)
15 1a31_A Protein (topoisomerase 34.4 19 0.00085 14.8 8.8 106 33-175 301-425 (591)
16 1bl0_A Protein (multiple antib 31.4 21 0.00095 14.5 5.1 67 137-206 38-108 (129)
17 1eik_A RNA polymerase subunit 22.0 19 0.00082 14.9 0.5 42 2-52 17-58 (77)
No 1
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=99.96 E-value=6.8e-29 Score=186.48 Aligned_cols=183 Identities=26% Similarity=0.420 Sum_probs=133.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 98888999999986310111001002467899999999998617666888417532310247807872101023323465
Q T0623 1 YLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGG 80 (220)
Q Consensus 1 yl~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~~di~~~~~~i~i~~~~~~~~~~~~~ 80 (220)
+|+.+|++.+..... ....+++.+++.||+|.+|+++|+|.|++++.+.+.+...
T Consensus 105 ~ls~~e~~~~~~~~~---------------~~~~~~~~ll~~tg~R~~E~~~l~~~d~~~~~~~i~~~~~---------- 159 (320)
T 2a3v_A 105 VLTRDEIRRLLEIVD---------------PKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQG---------- 159 (320)
T ss_dssp CCCHHHHHHHTTSSC---------------HHHHHHHHHHHHSCCCHHHHHTCBGGGEETTTTEEEEEEE----------
T ss_pred CCHHHHHHHCCCCCC---------------HHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCC----------
T ss_conf 310355420000000---------------2588899998750012233333111100023455312356----------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-------CC---------------CCCCCEEEE-------
Q ss_conf 2012466687611025660899999999987642210024-------55---------------678870671-------
Q T0623 81 FGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWN-------DG---------------YLNRNFVFT------- 131 (220)
Q Consensus 81 ~~~~~~~k~~~~~R~vpi~~~~~~~L~~~~~~~~~~~~~~-------~~---------------~~~~~~if~------- 131 (220)
|+ ...|.||+...+...+..++.......... .. .....++|.
T Consensus 160 -------k~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (320)
T 2a3v_A 160 -------KG-GKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLD 231 (320)
T ss_dssp -------TT-TEEEEEECCGGGHHHHHHHHHHHHHHHHHHTSCTTBCCSCCSTTCTTTSTTGGGCGGGSBSSBCSSCEEE
T ss_pred -------CC-CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCC
T ss_conf -------46-7750684469999999999998676544333320330245158887645353021033000354444544
Q ss_pred ----CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHH
Q ss_conf ----2333332301345555555653388654420245556543466438998999998589987899998412378899
Q T0623 132 ----NHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMD 207 (220)
Q Consensus 132 ----~~~g~~l~~~~i~~~l~~~~~~~gi~~~~~~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~~t~~~Y~~~~~~~~ 207 (220)
...+.+.+...+++.++++++++|++.+++||+|||||||+|+++|+|+..||++|||+|++||+ +|+|+.++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~t~H~lRHt~At~l~~~g~~l~~v~~~lGH~s~~tT~-~Y~h~~~~~~ 310 (320)
T 2a3v_A 232 PESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQ-IYTHVLDRGA 310 (320)
T ss_dssp TTTTEEECCBCCHHHHHHHHHHHHHTTCCCSCCCHHHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHG-GGCC------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH-HHHCCCHHHH
T ss_conf 310000257476899999999999985999999871149999999998789999999884899989999-9884699899
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999875
Q T0623 208 KDMMNKLEQV 217 (220)
Q Consensus 208 ~~~~~~~~~~ 217 (220)
++++++|+++
T Consensus 311 ~~~~~~l~~~ 320 (320)
T 2a3v_A 311 SGVLSPLSRL 320 (320)
T ss_dssp CCCCCHHHHC
T ss_pred HHHHHHHHCC
T ss_conf 9986175249
No 2
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=99.94 E-value=7e-27 Score=174.75 Aligned_cols=156 Identities=19% Similarity=0.314 Sum_probs=114.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 98888999999986310111001002467899999999998617666888417532310247807872101023323465
Q T0623 1 YLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGG 80 (220)
Q Consensus 1 yl~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~~di~~~~~~i~i~~~~~~~~~~~~~ 80 (220)
|||.||++++++.+...... ...+++.+++.||||+||+++|+|+||+++...+.
T Consensus 6 ~Lt~eei~~l~~~~~~~~~~-----------~~~~~i~l~~~tG~R~~El~~l~~~di~~~~~~~~-------------- 60 (170)
T 1aih_A 6 FLYERDIYRLLAECDNSRNP-----------DLGLIVRICLATGARWSEAETLTQSQVMPYKITFT-------------- 60 (170)
T ss_dssp CCCHHHHHHHHHHHTTSSST-----------THHHHHHHHHHHCCCHHHHHTCBTTTEETTEEEEE--------------
T ss_pred CCCHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHCCCHHHHHCCCHHHHCCCCEEEE--------------
T ss_conf 89999999999986565896-----------59999999999587888896197776256420344--------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 20124666876110256608999999999876422100245567887067123333323013455555556533886544
Q T0623 81 FGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEV 160 (220)
Q Consensus 81 ~~~~~~~k~~~~~R~vpi~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~~~~ 160 (220)
.+|+++ .|.||+++.+.++|..+ .+.+|. -....+...+.+ ...+++..+
T Consensus 61 -----~~K~~~-~r~ipl~~~~~~~l~~~----------------~~~~~~------~~~~~~~~~~~~--~~~~~~~~~ 110 (170)
T 1aih_A 61 -----NTKSKK-NRTVPISDELFDMLPKK----------------RGRLFN------DAYESFENAVLR--AEIELPKGQ 110 (170)
T ss_dssp -----SSSSSC-EEEEECCHHHHHHSCCC----------------SSBSSC------CCHHHHHHHHHH--TTCCCCTTC
T ss_pred -----CCCCCC-EECCHHHHHHHHHHHHH----------------CCCCCC------CHHHHHHHHHHH--HHHCCCCCC
T ss_conf -----167766-10241489999999972----------------166665------107899988887--751268762
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 2024555654346643899899999858998789999841237889999999
Q T0623 161 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMN 212 (220)
Q Consensus 161 ~~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~~t~~~Y~~~~~~~~~~~~~ 212 (220)
++|+||||+||.|.++|+|+..||++|||+|++||+ +|+|++++..+++++
T Consensus 111 ~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~-~Y~~~~~~~l~~a~~ 161 (170)
T 1aih_A 111 LTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTM-RYAHFAPSHLESAVK 161 (170)
T ss_dssp TTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHG-GGGGGSCCCTTHHHH
T ss_pred CCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHH-HHHCCCHHHHHHHHH
T ss_conf 001032349999876597999999993899899999-988779999999998
No 3
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=99.92 E-value=2.2e-25 Score=165.99 Aligned_cols=160 Identities=24% Similarity=0.363 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 78999999999986176668884175323102478078721010233234652012466687611025660899999999
Q T0623 29 FYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKK 108 (220)
Q Consensus 29 ~~~~~~~~~~~~~~tGlR~~El~~L~~~di~~~~~~i~i~~~~~~~~~~~~~~~~~~~~k~~~~~R~vpi~~~~~~~L~~ 108 (220)
...+..+++.++++||+|++|+++|+|+|||++++.+.+.+ |+.+ .|.++........+..
T Consensus 129 ~~~~~~~~~~l~~~tG~R~~E~~~L~~~did~~~~~i~~~~------------------K~~k-~r~~~~~~~~~~~~~~ 189 (290)
T 1a0p_A 129 LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG------------------KGNK-ERLVPLGEEAVYWLET 189 (290)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTEEEEEC------------------SSSC-EEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEECC------------------CCCC-EEEEECCCCCHHHHHH
T ss_conf 21899999999998487789887380988486656788658------------------8983-0045303210257899
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9876422100245567887067123333323013455555556533886-544202455565434664389989999985
Q T0623 109 AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGID-KEVSSHILRHSHISLLSQQGVSLKAIMDRV 187 (220)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~-~~~~~H~lRht~at~l~~~G~~~~~i~~~l 187 (220)
......... ......+..+....+.+.....+...++...+.+|+. ++++||+|||||||.|+++|+|+..||++|
T Consensus 190 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~H~lRHt~at~l~~~G~~~~~i~~~l 266 (290)
T 1a0p_A 190 YLEHGRPWL---LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLL 266 (290)
T ss_dssp HHHHTHHHH---HTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHCSSCGGGSSCC
T ss_pred HHHHHHHHH---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 988753200---01455443332224664314899999999999844679987774189999999998799999999880
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 899878999984123788999999
Q T0623 188 GHSDHRTTLSIYSHVTEQMDKDMM 211 (220)
Q Consensus 188 GH~s~~~t~~~Y~~~~~~~~~~~~ 211 (220)
||+|++||+ +|+|++++..+++.
T Consensus 267 GH~s~~tt~-~Y~~~~~~~l~~~~ 289 (290)
T 1a0p_A 267 GHSDLSTTQ-IYTHVATERLRQLH 289 (290)
T ss_dssp --CCCCHHH-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHH-HHHCCCHHHHHHHC
T ss_conf 899888999-98768999999862
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=99.91 E-value=2.8e-24 Score=159.60 Aligned_cols=165 Identities=19% Similarity=0.224 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 98888999999986310111001002467899999999998617666888417532310247807872101023323465
Q T0623 1 YLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGG 80 (220)
Q Consensus 1 yl~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~~di~~~~~~i~i~~~~~~~~~~~~~ 80 (220)
+++.+|++++++.+.... .....++.++++||||++|+++|+|+|||.+ .+.|..+. .+.
T Consensus 179 ~~t~~e~~~l~~~~~~~~------------~~~~~~~~l~~~tG~R~~E~~~L~w~did~~--~~~i~~~K------t~~ 238 (356)
T 1z1b_A 179 RLTADEYLKIYQAAESSP------------CWLRLAMELAVVTGQRVGDLCEMKWSDIVDG--YLYVEQSK------TGV 238 (356)
T ss_dssp CCCHHHHHHHHHHTTSSC------------HHHHHHHHHHHHHCCCHHHHTTCBGGGEETT--EEEEECTT------TCC
T ss_pred CCCHHHHHHHHHCCCCCC------------CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCCC------CCC
T ss_conf 220366766420122455------------0245788999874124466433332212232--22222344------433
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC--
Q ss_conf 201246668761102566089999999998764221002455678870671233333230134555555565338865--
Q T0623 81 FGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDK-- 158 (220)
Q Consensus 81 ~~~~~~~k~~~~~R~vpi~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~~-- 158 (220)
....+ . ..+.+++.+.+.+.++.... ....+++|.+..|.+++.++++..|+++++.+|++.
T Consensus 239 ~~~~p--~---~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~gi~~~~ 302 (356)
T 1z1b_A 239 KIAIP--T---ALHIDALGISMKETLDKCKE-----------ILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEG 302 (356)
T ss_dssp EEEEE--T---TCEETTTTEEHHHHHHHHHH-----------HTCSSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSS
T ss_pred CEECC--C---CCCHHHHHHHHHHHHHHCCC-----------CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 02125--5---42102567765443331034-----------57773141155677578889999999999985999788
Q ss_pred -CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf -442024555654346643899899999858998789999841237
Q T0623 159 -EVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVT 203 (220)
Q Consensus 159 -~~~~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~~t~~~Y~~~~ 203 (220)
.+++|+||||++ .|++.|+++..||+++||++++|| ++|.+..
T Consensus 303 ~~~t~H~lRh~a~-~l~~~g~~~~~i~~~lGH~~~~~t-~~Y~~~~ 346 (356)
T 1z1b_A 303 DPPTFHELRSLSA-RLYEKQISDKFAQHLLGHKSDTMA-SQYRDDR 346 (356)
T ss_dssp BCCCTTHHHHHHH-HHHHHHTCHHHHHHHHTCSSHHHH-HHHTCCT
T ss_pred CCCCCCHHHHHHH-HHHHCCCCHHHHHHHHCCCCHHHH-HHHHCCC
T ss_conf 9997482899999-999869999999998389988999-9883274
No 5
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=99.88 E-value=1.5e-22 Score=149.52 Aligned_cols=165 Identities=19% Similarity=0.236 Sum_probs=113.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 98888999999986310111001002467899999999998617666888417532310247807872101023323465
Q T0623 1 YLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGG 80 (220)
Q Consensus 1 yl~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~~di~~~~~~i~i~~~~~~~~~~~~~ 80 (220)
+++.+|+++++..++... .....++.++++||+|++|+++|+|+||+.+ .+.+..+ +.+.
T Consensus 106 ~lt~ee~~~i~~~~~~~~------------~~~~~~~~l~~~tG~R~~E~~~L~~~di~~~--~~~~~~~------K~~~ 165 (283)
T 1z19_A 106 RLTADEYLKIYQAAESSP------------CWLRLAMELAVVTGQRVGDLCEMKWSDIVDG--YLYVEQS------KTGV 165 (283)
T ss_dssp CCCHHHHHHHHHHGGGSC------------HHHHHHHHHHHHSCCCHHHHTTCBGGGEETT--EEEEECT------TTCC
T ss_pred CCCHHHHHHHHCCCCHHH------------HHHHHHHHHHHHHCCCCCCCCCCCCEEEECC--CCCEECC------CCCC
T ss_conf 330366764202210022------------7889999999980765334454542023124--2000014------6785
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCC---
Q ss_conf 20124666876110256608999999999876422100245567887067123333323013455555556533886---
Q T0623 81 FGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGID--- 157 (220)
Q Consensus 81 ~~~~~~~k~~~~~R~vpi~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~--- 157 (220)
.... + . +.+.+++...+.+.+...... ....++|.+..|+|++.+++++.+.++++.+++.
T Consensus 166 ~~~~-~-~---~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (283)
T 1z19_A 166 KIAI-P-T---ALHIDALGISMKETLDKCKEI-----------LGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEG 229 (283)
T ss_dssp EEEE-E-T---TCEETTTTEEHHHHHHHHHHH-----------HCSSBSSCCTTSSCCCHHHHHHHHHHHHHHTTCCCSS
T ss_pred EEEE-C-C---CCCHHHHHHHHHHHHHHHHCC-----------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 1331-1-3---630146788888888764025-----------7764201211121100267778999999984777678
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 5442024555654346643899899999858998789999841237
Q T0623 158 KEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVT 203 (220)
Q Consensus 158 ~~~~~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~~t~~~Y~~~~ 203 (220)
..+++|+|||+ ++.++++|+++..||+++||+|++|| ++|.+..
T Consensus 230 ~~~t~H~lR~~-a~~l~~~g~~~~~i~~~lGH~~~~~t-~~Y~~~~ 273 (283)
T 1z19_A 230 DPPTFHELRSL-SARLYEKQISDKFAQHLLGHKSDTMA-SQYRDDR 273 (283)
T ss_dssp SCCCGGGHHHH-HHHHHHHHTCHHHHHHHHTCSSSCC---------
T ss_pred CCCCCCHHHHH-HHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHCCC
T ss_conf 99973849999-99999869899999999489988999-9985274
No 6
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 2crx_A* 1ouq_A* 1nzb_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A 1pvq_A ...
Probab=99.87 E-value=1.3e-21 Score=144.08 Aligned_cols=173 Identities=17% Similarity=0.115 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999998617666888417532310247807872101023323465201246668761102566089999999998
Q T0623 31 LFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAI 110 (220)
Q Consensus 31 ~~~~~~~~~~~~tGlR~~El~~L~~~di~~~~~~i~i~~~~~~~~~~~~~~~~~~~~k~~~~~R~vpi~~~~~~~L~~~~ 110 (220)
.+..+++.+++.+|+|.+|++++++.|++++.....+..... .+. ......|.+|++..+.+.+..+.
T Consensus 139 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~k~-~~~~~~r~~~~~~~~~~~l~~~~ 206 (324)
T 1xo0_A 139 IRNLAFLGIAYNTLLKIAEIARIRVKDISRTDGGRMLIHIGR-----------TKT-LVSTAGVEKALSLGVTKLVERWI 206 (324)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHCBGGGEEEEETTEEEEEECC-----------CCS-SSSCSCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCC-----------CCC-CCCCCCEEEEHHHHHHHHHHHHH
T ss_conf 999999974223566676653101222222210011000000-----------012-45666212004788999999888
Q ss_pred HHHHHHHCC---CCCCCCCCEEEECCCCCCCCCHHHHHHH-------HHHHHHCCCC-CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 764221002---4556788706712333332301345555-------5556533886-5442024555654346643899
Q T0623 111 LENKKDSKW---NDGYLNRNFVFTNHKGNPMQTERFNKIL-------REAAKDVGID-KEVSSHILRHSHISLLSQQGVS 179 (220)
Q Consensus 111 ~~~~~~~~~---~~~~~~~~~if~~~~g~~l~~~~i~~~l-------~~~~~~~gi~-~~~~~H~lRht~at~l~~~G~~ 179 (220)
......... ..........|....+.+++..++...+ ++++..+|++ ..++||+|||||||.|+++|+|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~H~lRht~at~l~~~G~~ 286 (324)
T 1xo0_A 207 SVSGVADDPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVS 286 (324)
T ss_dssp HHHCGGGSTTSBSSCEECTTSCEECCSSCCCCHHHHHHHHHHHHHHHHCSCCCSCCSCSSCCTTHHHHHHHHHHHHTTCC
T ss_pred HHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 87212211220122213432124543356431158888889999999999997288888878861389999999987899
Q ss_pred HHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8999998589987899998412378899999999987
Q T0623 180 LKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQ 216 (220)
Q Consensus 180 ~~~i~~~lGH~s~~~t~~~Y~~~~~~~~~~~~~~~~~ 216 (220)
+..||+++||+|++||+ +|.+.++.....++..||+
T Consensus 287 ~~~i~~~lGH~s~~tt~-~Y~~~~~~~~~~~~~~l~~ 322 (324)
T 1xo0_A 287 IPEIMQAGGWTNVNIVM-NYIRNLDSETGAMVRLLED 322 (324)
T ss_dssp HHHHHHHHTCSSSSSHH-HHSTTSGGGCCHHHHHHTC
T ss_pred HHHHHHHHCCCCHHHHH-HHHHCCHHHHHHHHHHHHC
T ss_conf 99999881999889999-9972536779999988745
No 7
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=99.86 E-value=1.7e-22 Score=149.24 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 98888999999986310111001002467899999999998617666888417532310247807872101023323465
Q T0623 1 YLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGG 80 (220)
Q Consensus 1 yl~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~~di~~~~~~i~i~~~~~~~~~~~~~ 80 (220)
.||.||++++++..+... .+...++.++++||||+||+++|+|+||+++...+.+.++
T Consensus 3 ~ls~eE~~~i~~~~~~~~------------~~~~~~~~l~~~tGlR~~Ev~~L~~~di~~~~~~i~~~~~---------- 60 (179)
T 1ae9_A 3 RLTADEYLKIYQAAESSP------------CWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKT---------- 60 (179)
T ss_dssp CCCHHHHHHHHHHGGGSC------------HHHHHHHHHHHHHCCCHHHHHHCBGGGEETTEEEEECTTT----------
T ss_pred CCCHHHHHHHHHHHHHCC------------HHHHHHHHHHHHHCCCHHHHHHCCHHHHHCCHHEEEECCC----------
T ss_conf 999999999999885588------------9999999999996859899972734663031321331257----------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCC---
Q ss_conf 20124666876110256608999999999876422100245567887067123333323013455555556533886---
Q T0623 81 FGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGID--- 157 (220)
Q Consensus 81 ~~~~~~~k~~~~~R~vpi~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~--- 157 (220)
+. .|.+|+.+.....+..+......... .....+.+....+.+.......+.+..+++.++..
T Consensus 61 ---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (179)
T 1ae9_A 61 ---------GV-KIAIPTALHIDALGISMKETLDKCKE----ILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEG 126 (179)
T ss_dssp ---------CC-EEEEETTCEEGGGTEEHHHHHHHHHH----HTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSS
T ss_pred ---------CC-CCCCCCCHHHHHHHHHHHHHHHHHCC----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf ---------86-45666757899999999877765213----56654310002688665540478999999999862132
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 5442024555654346643899899999858998789999841237
Q T0623 158 KEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVT 203 (220)
Q Consensus 158 ~~~~~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~~t~~~Y~~~~ 203 (220)
..+++|++||+ ++.++++|+|+..||+++||+|++||.+ |....
T Consensus 127 ~~~~~h~lR~~-~~~~~~~g~~~~~i~~~lGH~s~~~t~~-Y~~~~ 170 (179)
T 1ae9_A 127 DPPTFHELRSL-SARLYEKQISDKFAQHLLGHKSDTMASQ-FRDDR 170 (179)
T ss_dssp SCCCTTHHHHH-HHHHHHHHTCHHHHHHHHTC---------CEECS
T ss_pred CCHHHHHHHHH-HHHHHHCCCCHHHHHHHHCCCCHHHHHH-HHHCC
T ss_conf 10125769999-9999995999999999838999999999-87365
No 8
>2f4q_A Type I topoisomerase, putative; topoisomerase IB; 1.75A {Deinococcus radiodurans}
Probab=97.80 E-value=0.00032 Score=42.68 Aligned_cols=138 Identities=20% Similarity=0.268 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHCCCCHHH-----------HHCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 999999999861766688-----------841753231024780787210102332346520124666876110256608
Q T0623 32 FVALMTEFQALNGMRIGE-----------MLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSS 100 (220)
Q Consensus 32 ~~~~~~~~~~~tGlR~~E-----------l~~L~~~di~~~~~~i~i~~~~~~~~~~~~~~~~~~~~k~~~~~R~vpi~~ 100 (220)
.+++++.|+..|.+|+|- +..|+.++|.++.+.+.+. + .+|.+..+...--++
T Consensus 123 vlA~~v~Lld~~~iRvGne~Y~ken~S~GltTLr~~Hv~i~~~~i~~~--F--------------~GK~Gv~~~~~i~d~ 186 (346)
T 2f4q_A 123 VMALMTRLLHVARFRVGSDIYARQHKTYGLSTLRQRHVVVDGNTVTFR--F--------------KGKHGVSQHKATSDR 186 (346)
T ss_dssp HHHHHHHHHHHHCCCC----------CCCGGGCBGGGEEEETTEEEEE--E--------------ECGGGCEEEEEEECH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEECCCCEEEECCEEEEE--E--------------ECCCCEEEEEEECCH
T ss_conf 999999999972860688001332498150011002257858979999--9--------------668873888875678
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC---CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH--
Q ss_conf 99999999987642210024556788706712333---3323013455555556533886544202455565434664--
Q T0623 101 RSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKG---NPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQ-- 175 (220)
Q Consensus 101 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g---~~l~~~~i~~~l~~~~~~~gi~~~~~~H~lRht~at~l~~-- 175 (220)
.+...|....... ....+.|....+ .+++...+|..|++++ | +||+..||=+.||.++.
T Consensus 187 ~l~~~l~~l~~~~----------g~~lf~~~d~~~g~~~~V~s~dVN~YLk~~~---g---~fTaKdFRTW~at~~a~~~ 250 (346)
T 2f4q_A 187 TLAANMQKLLDLP----------GPWLFQTVDAGGGERRRIHSTELNAYLREVI---G---PFTAKDFRTWGGTLLAAEY 250 (346)
T ss_dssp HHHHHHHHHHTSC----------SSBSSEEECSSSSCEEECCHHHHHHHHHHHH---T---TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC----------CHHHHHHHHCCCCCEECCCHHHHHHHHHHHC---C---CCCHHHCCCCHHHHHHHHH
T ss_conf 9999999998357----------6065554423588711057999999999865---9---9861000240019999999
Q ss_pred ---CCC-------------CHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf ---389-------------989999985899878999984123
Q T0623 176 ---QGV-------------SLKAIMDRVGHSDHRTTLSIYSHV 202 (220)
Q Consensus 176 ---~G~-------------~~~~i~~~lGH~s~~~t~~~Y~~~ 202 (220)
.+. .+..++..|||+ +.++-+.|+|-
T Consensus 251 L~~~~~~~~~~~~kk~i~~ai~~vA~~LgNT-paVcRksYI~P 292 (346)
T 2f4q_A 251 LAQQGTESSERQAKKVLVDCVKFVADDLGNT-PAVTRGSYICP 292 (346)
T ss_dssp HHHHCCCSSHHHHHHHHHHHHHHHHHHHTCC-HHHHHHHTSCT
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHCCCH
T ss_conf 9846788998999999999999999984897-76676744798
No 9
>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2}
Probab=97.59 E-value=0.0017 Score=38.42 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=73.5
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCHHHCCC-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHH
Q ss_conf 9999999986176668884175323102-47807872101023323465201246668761102566---0899999999
Q T0623 33 VALMTEFQALNGMRIGEMLAIQNEDIDF-DNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGL---SSRSCEILKK 108 (220)
Q Consensus 33 ~~~~~~~~~~tGlR~~El~~L~~~di~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~k~~~~~R~vpi---~~~~~~~L~~ 108 (220)
..+.+.++..||.|+.||+. -+.+.. ....+.+.++.... ++ .......||. ++.++..++.
T Consensus 282 ~~LAiaLAlaTGRRpiEILk--tgeF~~s~~ysL~FsGQAKKR----~~--------d~~~syeIPtLida~lVIkAik~ 347 (558)
T 2v6e_A 282 APLAFALAALSGRRMIEIML--QGEFSVAGKYTVTFLGQAKKR----SE--------DKGISRKIYTLCDATLFVSLVNE 347 (558)
T ss_dssp HHHHHHHHHHHCCCHHHHHT--TCEEEECSSSEEEEECCTTCC----CC--------SCCCEEEEECSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHH--HCEEEECCCCEEEEEEHHHHC----CC--------CCCCCEEEEEECCHHHHHHHHHH
T ss_conf 99999999992764787630--054665698369985014213----68--------88775465430468999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHH----HHHHHHHCCCCCCCCHHHHHHHHHHHHHH---------
Q ss_conf 98764221002455678870671233333230134555----55556533886544202455565434664---------
Q T0623 109 AILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKI----LREAAKDVGIDKEVSSHILRHSHISLLSQ--------- 175 (220)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~----l~~~~~~~gi~~~~~~H~lRht~at~l~~--------- 175 (220)
.+..-........ .... ...+...+...+++. |+...+..--...++||.+|+-|+....+
T Consensus 348 LR~l~~~a~L~~~-~~s~-----~~~~~~~~N~~VN~k~a~~ln~~vk~lF~~~~vsfhDlRAIYa~IAye~F~~~d~r~ 421 (558)
T 2v6e_A 348 LRSCPAAADFDEV-IKGY-----GENDTRSENGRINAILATAFNPWVKTFLGDDRRVYKDSRAIYARIAYEMFFRVDPRW 421 (558)
T ss_dssp HTTSGGGTTHHHH-TTCS-----STTCCCCHHHHHHHHHHHHHHHHHHHHHSSSSCCTTHHHHHHHHHHHHHHTTTSGGG
T ss_pred HHHCHHHHHCCCC-CCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 9845433310333-2123-----542006569999999988603899975178850101206899999999872565131
Q ss_pred CCCCHH-HHHHHHCCCCHHHHHHHHHCC
Q ss_conf 389989-999985899878999984123
Q T0623 176 QGVSLK-AIMDRVGHSDHRTTLSIYSHV 202 (220)
Q Consensus 176 ~G~~~~-~i~~~lGH~s~~~t~~~Y~~~ 202 (220)
++.++. +++..+||.+++|+ -+|.+.
T Consensus 422 k~~~~NvF~k~VLGHedidTq-~hY~~f 448 (558)
T 2v6e_A 422 KNVDEDVFFMEILGHDDENTQ-LHYKQF 448 (558)
T ss_dssp TTSCHHHHHHHHHTCSSTTGG-GSSCCE
T ss_pred CCCCHHHHHHHHHCCCCHHHH-HHHHEE
T ss_conf 246199999998588862555-566615
No 10
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A
Probab=96.79 E-value=0.0075 Score=34.68 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHCCCCHH-H----------HHCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCH
Q ss_conf 99999999986176668-8----------841753231024780787210102332346520124666876110-25660
Q T0623 32 FVALMTEFQALNGMRIG-E----------MLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYR-TIGLS 99 (220)
Q Consensus 32 ~~~~~~~~~~~tGlR~~-E----------l~~L~~~di~~~~~~i~i~~~~~~~~~~~~~~~~~~~~k~~~~~R-~vpi~ 99 (220)
.+++++.|+-.+.+|+| | +..|+..+|.++.+.+.+. . . +|.+..+. .|.-+
T Consensus 116 vlA~~v~Lld~~~iRVGne~Ya~~N~SyGlTTLr~rHV~i~g~~i~f~--F------~--------GKsGv~~~~~v~~d 179 (314)
T 2h7g_X 116 QLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDKIVIK--F------V--------GKDKVSHEFVVHKS 179 (314)
T ss_dssp HHHHHHHHHHHHCCCCCCHHHHHHHCCCCSTTCBGGGEEEETTEEEEE--E------E--------CGGGCEEEEEEETT
T ss_pred HHHHHHHHHHHHCEECCCHHHHHCCCCCCEEEEECCCEEEECCEEEEE--E------E--------CCCCCEEEEEECCC
T ss_conf 999999999862351578321011587251020102178989989999--8------7--------67883589997365
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC---
Q ss_conf 89999999998764221002455678870671233333230134555555565338865442024555654346643---
Q T0623 100 SRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQ--- 176 (220)
Q Consensus 100 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~~~~~~H~lRht~at~l~~~--- 176 (220)
+.+...|....... ....++| ...+.+.++..++.. .+|+..||-+.||.++..
T Consensus 180 ~rl~~~l~~~~~~~----------~~~~~lf-----~~v~~~~vn~yl~~~--------~~taKdFRTw~at~~~~~~l~ 236 (314)
T 2h7g_X 180 NRLYKPLLKLTDDS----------SPEEFLF-----NKLSERKVYESIKQF--------GIRIKDLRTYGVNYTFLYNFW 236 (314)
T ss_dssp STTHHHHHHHCCTT----------CTTSBSS-----TTCCHHHHHHHHGGG--------TSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC----------CCCCEEE-----EECCCHHHHHHHHCC--------CCHHHHHHHHCCHHHHHHHHH
T ss_conf 89999999997557----------9520378-----866640067775515--------841788986575499999998
Q ss_pred ---C--C-----------CHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf ---8--9-----------989999985899878999984123
Q T0623 177 ---G--V-----------SLKAIMDRVGHSDHRTTLSIYSHV 202 (220)
Q Consensus 177 ---G--~-----------~~~~i~~~lGH~s~~~t~~~Y~~~ 202 (220)
+ . -+..+++.|||+ +.++-+.|+|-
T Consensus 237 ~~~~~~~~~~~~kk~i~~~i~~vA~~LgNT-paVcR~sYIhP 277 (314)
T 2h7g_X 237 TNVKSISPLPSPKKLIALTIKQTAEVVGHT-PSISKRAYMAT 277 (314)
T ss_dssp HHHHHCSSCCCHHHHHHHHHHHHHHHHTCC-TTTHHHHSTHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHCCCH
T ss_conf 517766656789999999999999983896-54555745799
No 11
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=82.17 E-value=2.1 Score=20.38 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHCCCCHH-H----------HHCCCHHHCCCCC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 99999999986176668-8----------8417532310247-807872101023323465201246668761-102566
Q T0623 32 FVALMTEFQALNGMRIG-E----------MLAIQNEDIDFDN-KSLNINGTIHWFHDESGGFGVKDTTKTESS-YRTIGL 98 (220)
Q Consensus 32 ~~~~~~~~~~~tGlR~~-E----------l~~L~~~di~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~k~~~~-~R~vpi 98 (220)
..++++.++-.+++|+| | ++.|+..+|.+.. +.+.+. . .+|.+.- ...|.+
T Consensus 276 qlA~al~LID~~alRvGnekY~~en~S~GltTLr~eHV~l~~~~~v~f~--------F--------~GK~gvr~~~~v~~ 339 (432)
T 2b9s_A 276 QRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQLMPDNIVRFD--------F--------LGKDSIRYQNDVAV 339 (432)
T ss_dssp HHHHHHHHHHHHCCCCCCCCCTTSCCCCCGGGCBGGGEEECTTSEEEEE--------E--------ECGGGCEEEEEEEC
T ss_pred HHHHHHHHHHHHCEECCCCCCCCCCCCEEECCCCHHHEEECCCCEEEEE--------E--------CCCCCCEEEEEEEC
T ss_conf 9999999999747505770010027978554454631685489889999--------7--------68767078999843
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 08999999999876422100245567887067123333323013455555556533886544202455565434664
Q T0623 99 SSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQ 175 (220)
Q Consensus 99 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~~~~~~H~lRht~at~l~~ 175 (220)
++.+...|....... .+.+.|| ..++...+|..|+.+ + ..+|+..||-..||..+.
T Consensus 340 d~~v~k~L~~~~~~k----------~pgd~LF-----~~I~s~~lN~yLk~~----~--~g~TAKdFRTw~AS~tl~ 395 (432)
T 2b9s_A 340 LPEVYALLQRFTRRK----------SPGMDIF-----DQLNPTQLNDHLKSF----M--DGLSAKVFRTYNASITLD 395 (432)
T ss_dssp CHHHHHHHHHHHTTC----------CTTSBTT-----TTCCHHHHHHHHTTT----S--TTCCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCC----------CCHHHHC-----CCCCHHHHHHHHHHH----C--CCCCEECCCCCCHHHHHH
T ss_conf 899999999996567----------9847624-----858989999999986----8--998742730231489999
No 12
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=42.72 E-value=14 Score=15.61 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 654420245556543466438998999998589987899998412
Q T0623 157 DKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSH 201 (220)
Q Consensus 157 ~~~~~~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~~t~~~Y~~ 201 (220)
++.+|+....+ |-.|+++|.+...|++.+|=+ ..|.++ |..
T Consensus 3 ~~~lt~~q~~~--a~~l~~~G~~~~~IA~~~gVS-r~TlYr-ylp 43 (52)
T 1jko_C 3 PRAINKHEQEQ--ISRLLEKGHPRQQLAIIFGIG-VSTLYR-YFP 43 (52)
T ss_dssp CCSSCTTHHHH--HHHHHHTTCCHHHHHHTTSCC-HHHHHH-HSC
T ss_pred CCCCCHHHHHH--HHHHHHCCCCHHHHHHHHCCC-HHHHHH-HCC
T ss_conf 88699999999--999998789899999997979-999999-855
No 13
>2waq_H DNA-directed RNA polymerase RPO5 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_H 2pmz_H 3hkz_H
Probab=41.62 E-value=8.8 Score=16.77 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH
Q ss_conf 888899999998631011100100246789999999999861766688841753
Q T0623 2 LELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQN 55 (220)
Q Consensus 2 l~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~ 55 (220)
|+.+|.+++++...........-...+. + +.+.|+++|+++.+.+
T Consensus 23 ls~ee~~~~l~~y~i~~~qLP~I~~~DP-----v----a~~~g~k~GdVvkI~R 67 (84)
T 2waq_H 23 LSIDEAYKILKELGIRPEQLPWIRASDP-----V----ARSINAKPGDIIRIIR 67 (84)
T ss_dssp CCHHHHHHHHHHHTCCGGGSCCCCSSSH-----H----HHHHTCCTTSCEEEEE
T ss_pred CCHHHHHHHHHHHCCCHHHCCCCCCCCH-----H----HHHHCCCCCCEEEEEE
T ss_conf 6999999999987399878991346298-----7----8861887896899997
No 14
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=38.41 E-value=9.1 Score=16.69 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHH
Q ss_conf 8888999999986310111001002467899999999998617666888417532
Q T0623 2 LELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNE 56 (220)
Q Consensus 2 l~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~~ 56 (220)
|+.+|.+++++...........-... +.+ .-+.|+|+|+++.+.+.
T Consensus 15 l~~ee~~~il~~y~i~~~qLP~I~~~-----DPv----~~~~g~~~GdvikI~R~ 60 (78)
T 1hmj_A 15 VPKEEVEEILKRYNIKIQQLPKIYED-----DPV----IQEIGAKEGDVVRVIRK 60 (78)
T ss_pred CCHHHHHHHHHHHCCCHHHCCEECCC-----CHH----HHHHCCCCCEEEEEEEC
T ss_conf 69999999999969998889924262-----987----88647799908999972
No 15
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=34.39 E-value=19 Score=14.83 Aligned_cols=106 Identities=18% Similarity=0.252 Sum_probs=59.0
Q ss_pred HHHHHHHHHHCCCCHH------H------HHCCCHHHCCCCCC------CEEEEEEECCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 9999999986176668------8------84175323102478------078721010233234652012466687-611
Q T0623 33 VALMTEFQALNGMRIG------E------MLAIQNEDIDFDNK------SLNINGTIHWFHDESGGFGVKDTTKTE-SSY 93 (220)
Q Consensus 33 ~~~~~~~~~~tGlR~~------E------l~~L~~~di~~~~~------~i~i~~~~~~~~~~~~~~~~~~~~k~~-~~~ 93 (220)
.++++.++-.+.+|+| | ++.|+..+|.+... .+.+. -.+|.+ .-.
T Consensus 301 lA~avyLID~lalRVGNEky~~EnadTvG~tTLR~eHV~l~~~~~~~~~~v~fd----------------FlGKdgir~~ 364 (591)
T 1a31_A 301 RAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFD----------------FLGKDSIRYY 364 (591)
T ss_dssp HHHHHHHHHHHCCCCCCCCCTTTSCCCCCGGGCBGGGCCEEEEETTEEEEEEEE----------------EECGGGCEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCHHHEEECCCCCCCCCEEEEE----------------EECCCCCEEE
T ss_conf 999999999754415770012214997702237386644025656777538999----------------8626761677
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 02566089999999998764221002455678870671233333230134555555565338865442024555654346
Q T0623 94 RTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLL 173 (220)
Q Consensus 94 R~vpi~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~~~~~~H~lRht~at~l 173 (220)
..|++++.+...|...... ..+.+.+| ..++.+.+|..|+.+. .++|+..||=..||..
T Consensus 365 ~~V~vd~~v~knLk~~~k~----------k~p~d~LF-----~~l~s~~VN~YLke~m------~glTAKdFRTwnAS~t 423 (591)
T 1a31_A 365 NKVPVEKRVFKNLQLFMEN----------KQPEDDLF-----DRLNTGILNKHLQDLM------EGLTAKVFRTYNASIT 423 (591)
T ss_dssp EEEECCHHHHHHHHHTTTT----------CCTTSBTT-----TTCCHHHHHHHHHHHS------TTCCHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHC----------CCCCCCCC-----CCCCHHHHHHHHHHHC------CCCCHHHHHHHHHHHH
T ss_conf 8851489999999999866----------69853423-----3178788899999864------8974002101015899
Q ss_pred HH
Q ss_conf 64
Q T0623 174 SQ 175 (220)
Q Consensus 174 ~~ 175 (220)
+.
T Consensus 424 l~ 425 (591)
T 1a31_A 424 LQ 425 (591)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 16
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=31.42 E-value=21 Score=14.53 Aligned_cols=67 Identities=9% Similarity=0.138 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHHHHHH---HCCCHHH
Q ss_conf 32301345555555653388654420245556543466-4389989999985899878999984---1237889
Q T0623 137 PMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS-QQGVSLKAIMDRVGHSDHRTTLSIY---SHVTEQM 206 (220)
Q Consensus 137 ~l~~~~i~~~l~~~~~~~gi~~~~~~H~lRht~at~l~-~~G~~~~~i~~~lGH~s~~~t~~~Y---~~~~~~~ 206 (220)
.+++..+.+.|++.. |....=-...+|-..|..++ +.+.++..|+..+|-.|...-.+.+ .+.++..
T Consensus 38 ~~S~~~l~r~Fk~~~---g~s~~~~i~~~Rl~~A~~~L~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~~ 108 (129)
T 1bl0_A 38 GYSKWHLQRMFKKET---GHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHK 108 (129)
T ss_dssp SSCHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHHH
T ss_pred CCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 919999999999998---96999999868999999998858999999978709998899999999998909999
No 17
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=22.03 E-value=19 Score=14.90 Aligned_cols=42 Identities=12% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHC
Q ss_conf 888899999998631011100100246789999999999861766688841
Q T0623 2 LELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLA 52 (220)
Q Consensus 2 l~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~ 52 (220)
|+.+|.+.+++...........-...+ .+ ..+.|+.+|++..
T Consensus 17 ls~eE~~~lL~~y~i~~~qLPkI~~~D-----Pi----~r~~g~k~GdVvk 58 (77)
T 1eik_A 17 LNESEAKRVLKELDAHPEQLPKIKTTD-----PV----AKAIGAKRGDIVK 58 (77)
T ss_dssp ECHHHHHHHHHHTTCCTTTSCCCBTTS-----HH----HHGGGCCTTCEEE
T ss_pred CCHHHHHHHHHHHCCCHHHCCCCCCCC-----HH----HHHCCCCCCCEEE
T ss_conf 699999999999098978999211558-----21----0201898898899
Done!