Query T0623 3NKH, , 220 residues
Match_columns 220
No_of_seqs 108 out of 7094
Neff 9.9
Searched_HMMs 15564
Date Thu Jul 22 15:10:53 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0623.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0623.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a0pa2 d.163.1.1 (A:111-292) 100.0 1.9E-32 1.2E-36 206.3 10.6 179 1-211 2-181 (182)
2 d1a0pa2 d.163.1.1 (A:111-292) 100.0 1E-28 6.6E-33 184.5 11.2 179 1-211 2-181 (182)
3 d1aiha_ d.163.1.1 (A:) Integra 99.9 4.2E-27 2.7E-31 175.1 11.7 156 1-212 6-161 (170)
4 d1f44a2 d.163.1.1 (A:130-343) 99.9 1.1E-25 7E-30 166.9 13.8 191 2-216 8-212 (214)
5 d1ae9a_ d.163.1.1 (A:) Integra 99.9 1.9E-22 1.2E-26 147.9 5.7 164 1-202 3-169 (179)
6 d1a41a_ d.163.1.2 (A:) Eukaryo 97.1 0.0012 7.7E-08 38.4 7.5 131 32-202 36-197 (230)
7 d1k4ta2 d.163.1.2 (A:431-640,A 91.9 0.36 2.3E-05 23.9 7.0 122 32-190 44-203 (263)
8 d1dzfa2 d.78.1.1 (A:144-215) E 47.3 4.4 0.00028 17.6 1.6 45 2-55 13-57 (72)
9 d1dzfa2 d.78.1.1 (A:144-215) E 44.7 5.1 0.00033 17.2 1.6 46 2-56 13-58 (72)
10 d1hmja_ d.78.1.1 (A:) RNA poly 40.0 6.1 0.00039 16.8 1.4 45 2-55 6-50 (68)
11 d1eika_ d.78.1.1 (A:) RNA poly 35.7 5.6 0.00036 17.0 0.7 45 2-55 17-61 (77)
12 d1j09a1 a.97.1.1 (A:306-468) C 30.5 15 0.00099 14.4 2.7 55 138-197 102-156 (163)
13 d1j09a1 a.97.1.1 (A:306-468) C 26.6 18 0.0012 14.0 2.7 49 138-188 102-150 (163)
14 d1uoua1 a.46.2.1 (A:33-100) Th 23.0 21 0.0014 13.6 3.8 45 2-55 17-61 (68)
No 1
>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=1.9e-32 Score=206.34 Aligned_cols=179 Identities=22% Similarity=0.332 Sum_probs=148.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 98888999999986310111001002467899999999998617666888417532310247807872101023323465
Q T0623 1 YLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGG 80 (220)
Q Consensus 1 yl~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~~di~~~~~~i~i~~~~~~~~~~~~~ 80 (220)
+||.+|++++++.++..... ..+..+++.+++.||||++|+++|+|+||+++++.+.|..
T Consensus 2 ~lt~eE~~~ll~~~~~~~~~---------~~r~~~~~~l~~~tG~R~~Ei~~L~~~~i~~~~~~i~i~~----------- 61 (182)
T d1a0pa2 2 DLSEAQVERLLQAPLIDQPL---------ELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG----------- 61 (182)
T ss_dssp CCCHHHHHHHHHCSCTTSHH---------HHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTEEEEEC-----------
T ss_pred CCCHHHHHHHHHHHCCCCCH---------HHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCC-----------
T ss_conf 98889999999862347814---------5789999999997124611021111121111100111001-----------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC-C
Q ss_conf 201246668761102566089999999998764221002455678870671233333230134555555565338865-4
Q T0623 81 FGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDK-E 159 (220)
Q Consensus 81 ~~~~~~~k~~~~~R~vpi~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~~-~ 159 (220)
|+.+ .|.||+++.+.+.+.+|+........ .....+++|.+..|++++.+++++.++++++.+|++. .
T Consensus 62 -------k~~k-~r~ipi~~~~~~~l~~~~~~~~~~~~---~~~~~~~lf~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 130 (182)
T d1a0pa2 62 -------KGNK-ERLVPLGEEAVYWLETYLEHGRPWLL---NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 130 (182)
T ss_dssp -------SSSC-EEEEECCHHHHHHHHHHHHHTHHHHH---TTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCGGG
T ss_pred -------CCCC-CCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf -------3433-21110001235778877764102210---023331000011111111100000012333211100135
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 4202455565434664389989999985899878999984123788999999
Q T0623 160 VSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 211 (220)
Q Consensus 160 ~~~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~~t~~~Y~~~~~~~~~~~~ 211 (220)
+++|+||||+||.++++|+|+..||+++||+|++||+ +|+|++++..++++
T Consensus 131 ~t~H~lRht~at~~~~~G~~~~~i~~~~GH~~~~~t~-~Y~~~~~~~~~~~~ 181 (182)
T d1a0pa2 131 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQ-IYTHVATERLRQLH 181 (182)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCGGGSSCC--CCCCHHH-HHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHCCCCCHHHHHHHHCCCCHHHHH-HHHCCCHHHHHHHH
T ss_conf 4411133530121101688989999985889889999-98628988999981
No 2
>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=1e-28 Score=184.50 Aligned_cols=179 Identities=22% Similarity=0.333 Sum_probs=134.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 98888999999986310111001002467899999999998617666888417532310247807872101023323465
Q T0623 1 YLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGG 80 (220)
Q Consensus 1 yl~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~~di~~~~~~i~i~~~~~~~~~~~~~ 80 (220)
+||.||+++|++....... ..++..+++.++++||+|++|+++|+|+||+++++.+.+.+.
T Consensus 2 ~Lt~eei~~ll~~~~~~~~---------~~lRd~~l~~l~~~tG~R~~ei~~L~~~~i~~~~~~i~~~~~---------- 62 (182)
T d1a0pa2 2 DLSEAQVERLLQAPLIDQP---------LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK---------- 62 (182)
T ss_dssp CCCHHHHHHHHHCSCTTSH---------HHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTEEEEECS----------
T ss_pred CCCHHHHHHHHHCCCCCCC---------HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEEECC----------
T ss_conf 8999999999827463881---------879999999999996776477420214141144328998368----------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCC-CC
Q ss_conf 20124666876110256608999999999876422100245567887067123333323013455555556533886-54
Q T0623 81 FGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGID-KE 159 (220)
Q Consensus 81 ~~~~~~~k~~~~~R~vpi~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~-~~ 159 (220)
+. ..|.++........+...+....... .......+.+....+.+++..++++.++++++.+|++ ++
T Consensus 63 --------~~-k~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 130 (182)
T d1a0pa2 63 --------GN-KERLVPLGEEAVYWLETYLEHGRPWL---LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 130 (182)
T ss_dssp --------SS-CEEEEECCHHHHHHHHHHHHHTHHHH---HTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCGGG
T ss_pred --------CC-EEEEEEECCHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf --------98-01257520013355666553112300---1234565421023577366899999999999984998578
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 4202455565434664389989999985899878999984123788999999
Q T0623 160 VSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMM 211 (220)
Q Consensus 160 ~~~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~~t~~~Y~~~~~~~~~~~~ 211 (220)
++||+||||+||.|+++|+|+..|++++||+|++||+ +|.|++.+..+++.
T Consensus 131 ~t~H~~Rht~at~l~~~G~~~~~I~~~lGH~s~~tt~-~Y~~~~~e~~re~~ 181 (182)
T d1a0pa2 131 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQ-IYTHVATERLRQLH 181 (182)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCGGGSSCC--CCCCHHH-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH-HHHCCCHHHHHHHH
T ss_conf 3614146589996556499999999995899889999-87687999999860
No 3
>d1aiha_ d.163.1.1 (A:) Integrase {Bacteriophage HP1 [TaxId: 10690]}
Probab=99.94 E-value=4.2e-27 Score=175.14 Aligned_cols=156 Identities=19% Similarity=0.311 Sum_probs=113.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 98888999999986310111001002467899999999998617666888417532310247807872101023323465
Q T0623 1 YLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGG 80 (220)
Q Consensus 1 yl~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~~di~~~~~~i~i~~~~~~~~~~~~~ 80 (220)
|||.+|++++++.+...... ...+++.++++||||++|+++|+|+||+++... +
T Consensus 6 ~Lt~eEi~~l~~~~~~~~~~-----------~~~~~i~l~~~tG~R~~E~~~L~~~dI~~~~~~--~------------- 59 (170)
T d1aiha_ 6 FLYERDIYRLLAECDNSRNP-----------DLGLIVRICLATGARWSEAETLTQSQVMPYKIT--F------------- 59 (170)
T ss_dssp CCCHHHHHHHHHHHTTSSST-----------THHHHHHHHHHHCCCHHHHHTCBTTTEETTEEE--E-------------
T ss_pred CCCHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEE--E-------------
T ss_conf 89999999999986365896-----------699999999997776112444331024421102--1-------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 20124666876110256608999999999876422100245567887067123333323013455555556533886544
Q T0623 81 FGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEV 160 (220)
Q Consensus 81 ~~~~~~~k~~~~~R~vpi~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~~~~ 160 (220)
..+|+++ .|.||+++.+.++|..+ .+.+|. .....+...+ ....+++++++
T Consensus 60 ----~~~K~~~-~r~ipl~~~~~~~l~~~----------------~~~~~~------~~~~~~~~~~--~~~~~~~~~~~ 110 (170)
T d1aiha_ 60 ----TNTKSKK-NRTVPISDELFDMLPKK----------------RGRLFN------DAYESFENAV--LRAEIELPKGQ 110 (170)
T ss_dssp ----ESSSSSC-EEEEECCHHHHHHSCCC----------------SSBSSC------CCHHHHHHHH--HHTTCCCCTTC
T ss_pred ----CCCCCCC-HHHHHHHHHHHHHHHHH----------------HCCCCC------CCHHHHHHHH--HHHHHCCCCCC
T ss_conf ----1444430-05776699999998751----------------001101------1112443345--66650257761
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 2024555654346643899899999858998789999841237889999999
Q T0623 161 SSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMN 212 (220)
Q Consensus 161 ~~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~~t~~~Y~~~~~~~~~~~~~ 212 (220)
+||+|||||||.|+++|+|+..|++++||+|++||. +|+|++++..+++++
T Consensus 111 ~~H~lRht~at~l~~~g~~~~~i~~~lGH~~~~~t~-~Y~~~~~~~~~~a~~ 161 (170)
T d1aiha_ 111 LTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTM-RYAHFAPSHLESAVK 161 (170)
T ss_dssp TTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHG-GGGGGSCCCTTHHHH
T ss_pred EEEECHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH-HHHCCCHHHHHHHHH
T ss_conf 011104655145521698999999980899989999-887679999999998
No 4
>d1f44a2 d.163.1.1 (A:130-343) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
Probab=99.93 E-value=1.1e-25 Score=166.87 Aligned_cols=191 Identities=17% Similarity=0.149 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCCCC-EEEEEEECCCCCCCCC
Q ss_conf 888899999998631011100100246789999999999861766688841753231024780-7872101023323465
Q T0623 2 LELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKS-LNINGTIHWFHDESGG 80 (220)
Q Consensus 2 l~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~~di~~~~~~-i~i~~~~~~~~~~~~~ 80 (220)
++.+|++.+...++... ....++..+++.++++||||++|+++|+|+||++..+. ..+..
T Consensus 8 ~~~~e~~~~~~~~~~~~--------~~~~~R~~ali~l~~~tGlR~~Ei~~L~~~di~~~~~~~~~i~i----------- 68 (214)
T d1f44a2 8 FERTDFDQVRSLMENSD--------RCQDIRNLAFLGIAYNTLLRIAEIARIRVKDISRTDGGRMLIHI----------- 68 (214)
T ss_dssp CCHHHHHHHHHHHTTCC--------CHHHHHHHHHHHHHHHHCCCHHHHHHCBGGGEEECGGGCEEEEE-----------
T ss_pred CCHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEECCCCCCEEEEE-----------
T ss_conf 99999999999986247--------22638999999999998107777875123112023331036666-----------
Q ss_pred CCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCEEEECCCCCCCCCHHHHHHHHHH---HH
Q ss_conf 201246668--7611025660899999999987642210024---556788706712333332301345555555---65
Q T0623 81 FGVKDTTKT--ESSYRTIGLSSRSCEILKKAILENKKDSKWN---DGYLNRNFVFTNHKGNPMQTERFNKILREA---AK 152 (220)
Q Consensus 81 ~~~~~~~k~--~~~~R~vpi~~~~~~~L~~~~~~~~~~~~~~---~~~~~~~~if~~~~g~~l~~~~i~~~l~~~---~~ 152 (220)
...|+ ....+.+++++.....+..++.......... .........|....+.+++.+.++..++.. .+
T Consensus 69 ----~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (214)
T d1f44a2 69 ----GRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIY 144 (214)
T ss_dssp ----CC--------CEEEECCHHHHHHHHHHHHHHCGGGSTTSBSSCCBCTTSCBCCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred ----EECCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ----3024564330010245366888775445542333232213321100124445643333443323333222322222
Q ss_pred ----HCCC-CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf ----3388-654420245556543466438998999998589987899998412378899999999987
Q T0623 153 ----DVGI-DKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQ 216 (220)
Q Consensus 153 ----~~gi-~~~~~~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~~t~~~Y~~~~~~~~~~~~~~~~~ 216 (220)
.+|. ..+++||+||||+||.|+++|+|+..||+++||+|++||. +|.+..+....++++.|++
T Consensus 145 ~~~~~~~~~~~~~t~HslRht~at~l~~~G~~~~~i~~~~GH~s~~~~~-~Y~~~~~~~~~~~~~~l~~ 212 (214)
T d1f44a2 145 GAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVM-NFIRNLDSETGAMVRLLED 212 (214)
T ss_dssp CSCCTTCCTTSSCCTTHHHHHHHHHHHHTTCCHHHHHHHHTCCCHHHHH-HHTTTCCSCCCHHHHHHTT
T ss_pred CCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCHHHHH-HHHHCCHHHHHHHHHHHHC
T ss_conf 2222011356678666641330027977799999999996899989999-9860334779999998862
No 5
>d1ae9a_ d.163.1.1 (A:) Integrase (Int) {Bacteriophage lambda [TaxId: 10710]}
Probab=99.85 E-value=1.9e-22 Score=147.93 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 98888999999986310111001002467899999999998617666888417532310247807872101023323465
Q T0623 1 YLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGG 80 (220)
Q Consensus 1 yl~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~~di~~~~~~i~i~~~~~~~~~~~~~ 80 (220)
.||.||++++++.++.... .+..++.++++||||++|+++|+|+||+.+...+...
T Consensus 3 ~lt~ee~~~l~~~~~~~~~------------~~~~~~~l~~~tG~R~~El~~L~~~di~~~~~~i~~~------------ 58 (179)
T d1ae9a_ 3 RLTADEYLKIYQAAESSPC------------WLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQS------------ 58 (179)
T ss_dssp CCCHHHHHHHHHHGGGSCH------------HHHHHHHHHHHHCCCHHHHHHCBGGGEETTEEEEECT------------
T ss_pred CCCHHHHHHHHHHHHHCCH------------HHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEEEC------------
T ss_conf 8999999999998756889------------9999999999967998764666202663011146411------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCC---
Q ss_conf 20124666876110256608999999999876422100245567887067123333323013455555556533886---
Q T0623 81 FGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGID--- 157 (220)
Q Consensus 81 ~~~~~~~k~~~~~R~vpi~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~--- 157 (220)
|++. .+.+|+.+.....+..+........ ........+....+.+++...++..+....+.++..
T Consensus 59 -------K~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (179)
T d1ae9a_ 59 -------KTGV-KIAIPTALHIDALGISMKETLDKCK----EILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEG 126 (179)
T ss_dssp -------TTCC-EEEEETTCEEGGGTEEHHHHHHHHH----HHTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSS
T ss_pred -------CCCC-CCCCCCCHHHHHHHHHHHHHHHHHC----CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf -------3333-2346674156778877655443311----357765213330477633453034666665311344332
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 544202455565434664389989999985899878999984123
Q T0623 158 KEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHV 202 (220)
Q Consensus 158 ~~~~~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~~t~~~Y~~~ 202 (220)
..+++|++||+ ++.++++|+|+..||+++||+|++||. +|.+.
T Consensus 127 ~~~~~h~lR~~-~t~~~~~g~~~~~i~~~lGH~s~~~t~-~Y~~~ 169 (179)
T d1ae9a_ 127 DPPTFHELRSL-SARLYEKQISDKFAQHLLGHKSDTMAS-QFRDD 169 (179)
T ss_dssp SCCCTTHHHHH-HHHHHHHHTCHHHHHHHHTC---------CEEC
T ss_pred CCCHHHHHHHH-HHHHHHCCCCHHHHHHHHCCCCHHHHH-HHHHC
T ss_conf 31037788888-889998499999999995899999999-98736
No 6
>d1a41a_ d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, catalytic core {Vaccinia virus [TaxId: 10245]}
Probab=97.09 E-value=0.0012 Score=38.38 Aligned_cols=131 Identities=17% Similarity=0.247 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHCCCCHH-H----------HHCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCH
Q ss_conf 99999999986176668-8----------841753231024780787210102332346520124666876110-25660
Q T0623 32 FVALMTEFQALNGMRIG-E----------MLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYR-TIGLS 99 (220)
Q Consensus 32 ~~~~~~~~~~~tGlR~~-E----------l~~L~~~di~~~~~~i~i~~~~~~~~~~~~~~~~~~~~k~~~~~R-~vpi~ 99 (220)
.+++++.++-.+.+|+| | +..|+..+|.++.+.+.+. . .+|.+..+. .+.-+
T Consensus 36 vlA~vv~Lld~~~iRvGne~Ya~~n~SyGltTLr~~Hv~i~~~~i~f~--F--------------~GKsGv~~~~~i~~d 99 (230)
T d1a41a_ 36 QLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDEIVIK--F--------------VGKDKVSHEFVVHKS 99 (230)
T ss_dssp HHHHHHHHHHCCC---------CCHHHHHHHTCBGGGEEEETTEEEEC--E--------------EETTTEEECCEEETT
T ss_pred HHHHHHHHHHHHCEECCCHHHHHHCCCCCEEEEEHHHEEEECCEEEEE--E--------------ECCCCCEEEEEEECC
T ss_conf 999999999973651688656762598351220131067718926998--7--------------558773489988337
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC---
Q ss_conf 89999999998764221002455678870671233333230134555555565338865442024555654346643---
Q T0623 100 SRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQ--- 176 (220)
Q Consensus 100 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~~~~~~H~lRht~at~l~~~--- 176 (220)
+.+...+....... ....++|. .++...++..++.. .+|+..||-+.||.++..
T Consensus 100 ~~l~~~l~~~~~~~----------~~~~~lf~-----~v~~~~vn~yl~~~--------~~taKdFRTw~at~~~~~~l~ 156 (230)
T d1a41a_ 100 NRLYKPLLKLTDDS----------SPEEFLFN-----KLSERKVYECIKQF--------GIRIKDLRTYGVNYTFLYNFW 156 (230)
T ss_dssp SSSHHHHHHHCCTT----------CTTSBSST-----TCCHHHHHHHHHHT--------TCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC----------CCCCCCCC-----CCCCHHHHHHHHHC--------CCCHHHHHHHCHHHHHHHHHH
T ss_conf 89999999998666----------95200000-----25633778888873--------760999998652899999998
Q ss_pred -----CC-----------CHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf -----89-----------989999985899878999984123
Q T0623 177 -----GV-----------SLKAIMDRVGHSDHRTTLSIYSHV 202 (220)
Q Consensus 177 -----G~-----------~~~~i~~~lGH~s~~~t~~~Y~~~ 202 (220)
.. -+..+++.|||+ |+++-+.|+|-
T Consensus 157 ~~~~~~~~~~~~kk~i~~~i~~vA~~LgNT-paV~rksYI~P 197 (230)
T d1a41a_ 157 TNVKSISPLPSPKKLIALTIKQTAEVVGHT-PSISKRAYMAT 197 (230)
T ss_dssp HHHHHSSSCCCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHCCCH
T ss_conf 506877877788999999999999995897-66678865799
No 7
>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.90 E-value=0.36 Score=23.93 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHCCCCHH------H------HHCCCHHHCCCCC------CCEEEEEEECCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 99999999986176668------8------8417532310247------80787210102332346520124666876-1
Q T0623 32 FVALMTEFQALNGMRIG------E------MLAIQNEDIDFDN------KSLNINGTIHWFHDESGGFGVKDTTKTES-S 92 (220)
Q Consensus 32 ~~~~~~~~~~~tGlR~~------E------l~~L~~~di~~~~------~~i~i~~~~~~~~~~~~~~~~~~~~k~~~-~ 92 (220)
..++++.++-.+.+|+| | ++.|+..+|.+.. +.+.+. -.+|.+. -
T Consensus 44 ~lA~al~LiD~~~lRvGneky~~en~dT~G~tTLr~eHv~l~~~~~~~~~~i~~~----------------F~GK~gvr~ 107 (263)
T d1k4ta2 44 QRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFD----------------FLGKDSIRY 107 (263)
T ss_dssp HHHHHHHHHHHSCCCCCCCCCTTTSCCCCCGGGCBGGGEEEEEEETTEEEEEEEE----------------EECGGGCEE
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHHHEEECCCCCCCCCEEEEE----------------EECCCCEEE
T ss_conf 9999999999737316880013235897602002221157614656778558999----------------744776389
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 10256608999999999876422100245567887067123333323013455555556533886544202455565434
Q T0623 93 YRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISL 172 (220)
Q Consensus 93 ~R~vpi~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~if~~~~g~~l~~~~i~~~l~~~~~~~gi~~~~~~H~lRht~at~ 172 (220)
...|++++.+...|+...... .+.+.+| ..++...+|..++.+ + ..+|+..||=+.||.
T Consensus 108 ~~~v~~~~~v~~~l~~~~~~k----------~~~d~LF-----~~i~s~~vN~yLk~~----~--~g~TaKdFRTw~As~ 166 (263)
T d1k4ta2 108 YNKVPVEKRVFKNLQLFMENK----------QPEDDLF-----DRLNTGILNKHLQDL----M--EGLTAKVFRTYNASI 166 (263)
T ss_dssp EEEEECCHHHHHHHHHHTTTC----------CTTSBSS-----TTCCHHHHHHHHHHH----S--TTCCTTHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHCC----------CCCHHHC-----CCCCHHHHHHHHHHH----C--CCCCEEECCCCCHHH
T ss_conf 999835889999999998766----------9821111-----668889999999996----6--997213021344699
Q ss_pred HH-----HCCCC---H-----------HHHHHHHCCC
Q ss_conf 66-----43899---8-----------9999985899
Q T0623 173 LS-----QQGVS---L-----------KAIMDRVGHS 190 (220)
Q Consensus 173 l~-----~~G~~---~-----------~~i~~~lGH~ 190 (220)
++ +.+.+ . ..|+-+++|.
T Consensus 167 ~~~~~L~~~~~~~~~~~~k~~~~n~Anr~VA~lcnHq 203 (263)
T d1k4ta2 167 TLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ 203 (263)
T ss_dssp HHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999998379998679999999999999999982887
No 8
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.31 E-value=4.4 Score=17.60 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH
Q ss_conf 888899999998631011100100246789999999999861766688841753
Q T0623 2 LELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQN 55 (220)
Q Consensus 2 l~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~ 55 (220)
|+.+|.+++++...........-...+ .+ +.+.|+|+|+++.+..
T Consensus 13 l~~eE~~~il~~y~i~~~qLP~I~~~D-----Pv----a~~~g~~~GdvikI~R 57 (72)
T d1dzfa2 13 LSSDEKRELLKRYRLKESQLPRIQRAD-----PV----ALYLGLKRGEVVKIIR 57 (72)
T ss_dssp CCHHHHHHHHHHTTCCGGGSCEECTTC-----HH----HHHHTCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHHCCCHHHCCEECCCC-----HH----HHHCCCCCCCEEEEEE
T ss_conf 599999999999598975799543639-----73----5611888897899997
No 9
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} SCOP: d1eika_ d1hmja_
Probab=44.71 E-value=5.1 Score=17.22 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHH
Q ss_conf 8888999999986310111001002467899999999998617666888417532
Q T0623 2 LELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNE 56 (220)
Q Consensus 2 l~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~~ 56 (220)
|+.+|.+++++..+........-.+.+ .+ ..+.|+++|+++.+...
T Consensus 13 l~~eE~~~~l~~y~i~~~qLP~I~~~D-----Pv----a~~~g~k~GdvikI~R~ 58 (72)
T d1dzfa2 13 LSSDEKRELLKRYRLKESQLPRIQRAD-----PV----ALYLGLKRGEVVKIIRK 58 (72)
T ss_dssp CCHHHHHHHHHHTTCCGGGSCEECTTC-----HH----HHHHTCCTTCEEEEECT
T ss_pred CCHHHHHHHHHHHCCCHHHCCEECCCC-----HH----HHHHCCCCCCEEEEEEC
T ss_conf 897899999987088968796631478-----30----43007998987889847
No 10
>d1hmja_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=40.05 E-value=6.1 Score=16.77 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH
Q ss_conf 888899999998631011100100246789999999999861766688841753
Q T0623 2 LELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQN 55 (220)
Q Consensus 2 l~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~ 55 (220)
|+.+|.+.+++...........-.. .+.+. .+.|+++|+++.+..
T Consensus 6 l~~eE~~~ll~~y~i~~~qLP~I~~-----~DPva----~~~g~k~GdvvkI~R 50 (68)
T d1hmja_ 6 VPKEEVEEILKRYNIKIQQLPKIYE-----DDPVI----QEIGAKEGDVVRVIR 50 (68)
T ss_pred CCHHHHHHHHHHHCCCHHHCCCCCC-----CCHHH----HHHCCCCCCEEEEEE
T ss_conf 7999999999992989889991225-----19878----981999995899997
No 11
>d1eika_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=35.73 E-value=5.6 Score=17.00 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH
Q ss_conf 888899999998631011100100246789999999999861766688841753
Q T0623 2 LELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQN 55 (220)
Q Consensus 2 l~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~ 55 (220)
|+.+|.+++++...........-... +.+ +.+.|+++|+++.+.+
T Consensus 17 l~~ee~~~~l~~~~i~~~qLP~I~~~-----DPv----a~~~g~k~GdvvkI~R 61 (77)
T d1eika_ 17 LNESEAKRVLKELDAHPEQLPKIKTT-----DPV----AKAIGAKRGDIVKIIR 61 (77)
T ss_dssp ECHHHHHHHHHHTTCCTTTSCCCBTT-----SHH----HHGGGCCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHCCCHHHCCEECCC-----CHH----HHHHCCCCCCEEEEEE
T ss_conf 69999999999856998789940362-----972----4510786885799997
No 12
>d1j09a1 a.97.1.1 (A:306-468) C-terminal domain of glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}
Probab=30.45 E-value=15 Score=14.44 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHH
Q ss_conf 230134555555565338865442024555654346643899899999858998789999
Q T0623 138 MQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLS 197 (220)
Q Consensus 138 l~~~~i~~~l~~~~~~~gi~~~~~~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~~t~~ 197 (220)
.+..++...++.+++..|+..+--++.+|-. ..--..|.++..++..+| .+.|.+
T Consensus 102 ~~~~~i~~~ik~~~~~~~~k~k~l~~plR~a--ltG~~~GP~i~~i~~llG---ke~~l~ 156 (163)
T d1j09a1 102 WTEAALEALLRGFAAEKGVKLGQVAQPLRAA--LTGSLETPGLFEILALLG---KERALR 156 (163)
T ss_dssp CSHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HHSCSCCSCHHHHHHHTC---HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHCCCCCCCHHHHHHHHC---HHHHHH
T ss_conf 7857799999999986078667889888887--726777887999999957---689999
No 13
>d1j09a1 a.97.1.1 (A:306-468) C-terminal domain of glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}
Probab=26.63 E-value=18 Score=14.04 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 230134555555565338865442024555654346643899899999858
Q T0623 138 MQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVG 188 (220)
Q Consensus 138 l~~~~i~~~l~~~~~~~gi~~~~~~H~lRht~at~l~~~G~~~~~i~~~lG 188 (220)
.+..++...++.+++..|+..+--++.+|-. ..-...|.++..++.++|
T Consensus 102 ~~~~~i~~~i~~~~~~~~ik~~~v~~plR~a--ltG~~~gP~l~~~i~llG 150 (163)
T d1j09a1 102 WTEAALEALLRGFAAEKGVKLGQVAQPLRAA--LTGSLETPGLFEILALLG 150 (163)
T ss_dssp CSHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HHSCSCCSCHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHH--HCCCCCCCCHHHHHHHHC
T ss_conf 2288898899999998087733343405754--148998979999999928
No 14
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.98 E-value=21 Score=13.63 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH
Q ss_conf 888899999998631011100100246789999999999861766688841753
Q T0623 2 LELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQN 55 (220)
Q Consensus 2 l~~~E~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGlR~~El~~L~~ 55 (220)
|+.+|++.+++.+-.-.-.. .....++.-+..-|+-..|+.++..
T Consensus 17 Ls~~E~~~~~~~i~~g~~s~---------~qi~afL~al~~kG~t~~Ei~~~t~ 61 (68)
T d1uoua1 17 LSEADIRGFVAAVVNGSAQG---------AQIGAMLMAIRLRGMDLEETSVLTQ 61 (68)
T ss_dssp CCHHHHHHHHHHHHHTCSCH---------HHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCH---------HHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999998499889---------9999999999982999999999999
Done!