Query T0624 RUMGNA_01417, Ruminococcus gnavus, 81 residues
Match_columns 81
No_of_seqs 18 out of 20
Neff 2.4
Searched_HMMs 22458
Date Thu Jul 22 14:52:31 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0624.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0624.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n10_A PHL P I, pollen allerge 32.3 13 0.0006 18.0 1.3 37 7-43 40-80 (241)
2 2hcz_X Beta-expansin 1A; domai 32.2 12 0.00052 18.3 1.0 26 17-42 51-79 (245)
3 2ztg_A Alanyl-tRNA synthetase; 29.2 31 0.0014 16.0 2.8 28 20-48 184-212 (739)
4 3buu_A Uncharacterized LOLA su 28.3 24 0.0011 16.6 2.1 14 40-53 181-194 (229)
5 3d30_A YOAJ, expansin like pro 26.2 37 0.0016 15.5 3.0 23 29-51 48-70 (208)
6 1bw3_A Barwin, basic barley SE 24.6 40 0.0018 15.3 3.0 33 18-50 46-82 (125)
7 2hg6_A Hypothetical protein; s 23.7 34 0.0015 15.7 2.2 26 2-27 34-59 (128)
8 3cc2_Z 50S ribosomal protein L 21.3 16 0.00073 17.5 0.2 20 29-48 77-96 (116)
9 1wc2_A Endoglucanase; hydrolas 19.5 34 0.0015 15.7 1.5 14 30-43 66-79 (181)
10 2zkr_z 60S ribosomal protein L 15.5 27 0.0012 16.3 0.2 20 29-48 53-72 (92)
No 1
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, double-PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3
Probab=32.31 E-value=13 Score=17.99 Aligned_cols=37 Identities=24% Similarity=0.477 Sum_probs=21.0
Q ss_pred CEEEECCC-CCCCEEEEE---CCCCCCCEECCCEEEEEECC
Q ss_conf 02676266-880002430---24233864149656898889
Q T0624 7 GTLFYDTE-TGRYDIRFD---LESFYGGLHCGECFDVKVKD 43 (81)
Q Consensus 7 G~L~yd~~-~dRY~i~~~---~~~~ygGlHCGe~~eV~v~g 43 (81)
|+.+|... .--|+.... ..-|..|..||.|+||.-.+
T Consensus 40 GaCgyg~l~~~~~g~~~aAls~~lf~~g~~CG~Cyev~c~~ 80 (241)
T 1n10_A 40 GACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK 80 (241)
T ss_dssp CTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECS
T ss_pred CCCCCCCCCCCCCCCEEEECCHHHHCCHHHCCCCEEEECCC
T ss_conf 24777865657887578764976824523335777998789
No 2
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin like beta-sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}
Probab=32.17 E-value=12 Score=18.33 Aligned_cols=26 Identities=31% Similarity=0.682 Sum_probs=16.9
Q ss_pred CCEEEEE---CCCCCCCEECCCEEEEEEC
Q ss_conf 0002430---2423386414965689888
Q T0624 17 RYDIRFD---LESFYGGLHCGECFDVKVK 42 (81)
Q Consensus 17 RY~i~~~---~~~~ygGlHCGe~~eV~v~ 42 (81)
-|+.... ..-+.+|..||.|+||.-.
T Consensus 51 ~~~~~~aAls~~lf~~g~~CG~Cyev~c~ 79 (245)
T 2hcz_X 51 PYSGMTACGNVPIFKDGKGCGSCYEVRCK 79 (245)
T ss_dssp TTTTCEEEECHHHHGGGTSTTCEEEEECC
T ss_pred CCCCEEEEECHHHHCCCCCCCCCEEEECC
T ss_conf 88757888278890688878768798768
No 3
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=29.21 E-value=31 Score=15.95 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=18.6
Q ss_pred EEEEC-CCCCCCEECCCEEEEEECCEEEEE
Q ss_conf 24302-423386414965689888956540
Q T0624 20 IRFDL-ESFYGGLHCGECFDVKVKDVWVPV 48 (81)
Q Consensus 20 i~~~~-~~~ygGlHCGe~~eV~v~gkWvpt 48 (81)
|.+.+ -|. +|=-||-|.|+++++--+-+
T Consensus 184 i~~~en~W~-~gG~~GPc~Ei~~~glEi~n 212 (739)
T 2ztg_A 184 IVYKEEPWA-GGGNAGPCLEAIVGGLEVAT 212 (739)
T ss_dssp CEEEEEEEE-ETTEEEEEEEEEETTEEEEE
T ss_pred CCCCCCCCC-CCCCCCCCEEEEECCCCCCC
T ss_conf 103567522-48996488702627611230
No 4
>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718}
Probab=28.30 E-value=24 Score=16.56 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=11.5
Q ss_pred EECCEEEEEEEEEC
Q ss_conf 88895654023334
Q T0624 40 KVKDVWVPVRIEMG 53 (81)
Q Consensus 40 ~v~gkWvptRiEm~ 53 (81)
.++|+|+|++|||-
T Consensus 181 ~~~g~~~p~~~~~~ 194 (229)
T 3buu_A 181 NILGEMRPTRIIME 194 (229)
T ss_dssp EETTEEEEEEEEEE
T ss_pred EECCEEEEEEEEEE
T ss_conf 96998724899999
No 5
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protein, unknown function, MLTA, bacteria autolysis, peptidoglycan-binding protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A
Probab=26.19 E-value=37 Score=15.48 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=15.8
Q ss_pred CCEECCCEEEEEECCEEEEEEEE
Q ss_conf 86414965689888956540233
Q T0624 29 GGLHCGECFDVKVKDVWVPVRIE 51 (81)
Q Consensus 29 gGlHCGe~~eV~v~gkWvptRiE 51 (81)
++-+||.|+||.-.++=+-++|-
T Consensus 48 ~~~~CG~c~~V~~~~~sv~v~V~ 70 (208)
T 3d30_A 48 KAALAGSYLEVEGPKGKTTVYVT 70 (208)
T ss_dssp TTTTTTCEEEEEETTEEEEEEEE
T ss_pred CCCCCCCEEEEEECCCEEEEEEE
T ss_conf 70138988999909975999997
No 6
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A
Probab=24.58 E-value=40 Score=15.30 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=21.5
Q ss_pred CEEEEE--CCCCCCCEECCCEEEEEECC--EEEEEEE
Q ss_conf 002430--24233864149656898889--5654023
Q T0624 18 YDIRFD--LESFYGGLHCGECFDVKVKD--VWVPVRI 50 (81)
Q Consensus 18 Y~i~~~--~~~~ygGlHCGe~~eV~v~g--kWvptRi 50 (81)
|+...- -..+-+|-.||.|++|.-.+ +=+-++|
T Consensus 46 yg~tA~~gp~~~~gga~CG~C~~Vt~~~~g~svtV~i 82 (125)
T 1bw3_A 46 YGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARI 82 (125)
T ss_dssp SCCEESCSTTCCCSGGGTTCEEEEEETTTTEEEEEEE
T ss_pred CCEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEE
T ss_conf 5435721666667775632359988579999899999
No 7
>2hg6_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa} SCOP: d.364.1.1
Probab=23.71 E-value=34 Score=15.65 Aligned_cols=26 Identities=35% Similarity=0.686 Sum_probs=21.9
Q ss_pred CCCCCCEEEECCCCCCCEEEEECCCC
Q ss_conf 75322026762668800024302423
Q T0624 2 SEHREGTLFYDTETGRYDIRFDLESF 27 (81)
Q Consensus 2 ~~mk~G~L~yd~~~dRY~i~~~~~~~ 27 (81)
|..-.|-.+||.++++|=.||+-.++
T Consensus 34 ADqL~GFVGfn~KtG~~ivRFSEDsF 59 (128)
T 2hg6_A 34 ADALKGFVGFNRKTGRYIVRFSEDSF 59 (128)
T ss_dssp GGSCCCEEEEETTTTEEEEESCGGGC
T ss_pred HHHHCCCCCCCCCCCEEEEEECCCCC
T ss_conf 99855512104667418999544234
No 8
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3cpw_Y*
Probab=21.32 E-value=16 Score=17.49 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.3
Q ss_pred CCEECCCEEEEEECCEEEEE
Q ss_conf 86414965689888956540
Q T0624 29 GGLHCGECFDVKVKDVWVPV 48 (81)
Q Consensus 29 gGlHCGe~~eV~v~gkWvpt 48 (81)
|=-+|+.|..++.+|.|.|.
T Consensus 77 GIW~C~~Cg~t~AGGAy~~~ 96 (116)
T 3cc2_Z 77 GIWQCSYCDYKFTGGSYKPE 96 (116)
T ss_dssp TEEEETTTCCEEECCSSSSS
T ss_pred EEEECCCCCCEEECCCCCCC
T ss_conf 88785888998846534563
No 9
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1
Probab=19.47 E-value=34 Score=15.68 Aligned_cols=14 Identities=36% Similarity=1.092 Sum_probs=11.7
Q ss_pred CEECCCEEEEEECC
Q ss_conf 64149656898889
Q T0624 30 GLHCGECFDVKVKD 43 (81)
Q Consensus 30 GlHCGe~~eV~v~g 43 (81)
|..||.|+||.-.+
T Consensus 66 G~~CG~Cyev~C~~ 79 (181)
T 1wc2_A 66 GQHCGQCIKLTTTG 79 (181)
T ss_dssp CTTTTCEEEEEEEE
T ss_pred CCCCCCEEEEEECC
T ss_conf 53345538999778
No 10
>2zkr_z 60S ribosomal protein L37A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_D
Probab=15.52 E-value=27 Score=16.27 Aligned_cols=20 Identities=30% Similarity=0.762 Sum_probs=17.4
Q ss_pred CCEECCCEEEEEECCEEEEE
Q ss_conf 86414965689888956540
Q T0624 29 GGLHCGECFDVKVKDVWVPV 48 (81)
Q Consensus 29 gGlHCGe~~eV~v~gkWvpt 48 (81)
|=.+|..|..++.+|.|.|.
T Consensus 53 GIW~C~~C~~~~AGGAy~~~ 72 (92)
T 2zkr_z 53 GIWHCGSCMKTVAGGAWTYN 72 (92)
T ss_dssp TEEEETTTCCEEECCSSSSS
T ss_pred EEEECCCCCCEEECCCCCCC
T ss_conf 88785889998857744550
Done!