Query T0624 RUMGNA_01417, Ruminococcus gnavus, 81 residues
Match_columns 81
No_of_seqs 18 out of 20
Neff 2.4
Searched_HMMs 11830
Date Thu Jul 22 14:55:53 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0624.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0624.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12226 Astro_capsid_p: Turke 37.0 5.2 0.00044 18.7 1.3 60 3-75 135-194 (230)
2 PF08150 FerB: FerB (NUC096) d 35.1 6.6 0.00056 18.1 1.6 34 8-42 18-52 (76)
3 PF03330 DPBB_1: Rare lipoprot 27.5 6.7 0.00057 18.1 0.6 19 23-41 5-23 (78)
4 PF11720 Inhibitor_I78: Bromel 16.1 24 0.002 15.0 1.4 24 11-34 37-60 (60)
5 PF09634 DUF2025: Protein of u 16.1 15 0.0013 16.1 0.4 26 2-27 12-37 (106)
6 PF10949 DUF2777: Protein of u 14.0 37 0.0031 13.9 2.5 17 35-51 47-63 (184)
7 PF04566 RNA_pol_Rpb2_4: RNA p 13.9 21 0.0018 15.3 0.7 11 39-49 1-11 (63)
8 PF09630 DUF2024: Domain of un 13.7 7.2 0.00061 17.9 -1.7 33 36-68 19-52 (81)
9 PF07249 Cerato-platanin: Cera 12.3 41 0.0035 13.6 2.3 44 31-74 57-110 (119)
10 PF07417 Crl: Transcriptional 10.6 25 0.0021 14.9 0.2 18 35-52 34-51 (125)
No 1
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein
Probab=37.03 E-value=5.2 Score=18.74 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=43.1
Q ss_pred CCCCCEEEECCCCCCCEEEEECCCCCCCEECCCEEEEEECCEEEEEEEEECCCEEEEEECCCCCCCEEEEEEC
Q ss_conf 5322026762668800024302423386414965689888956540233347426874044564624887411
Q T0624 3 EHREGTLFYDTETGRYDIRFDLESFYGGLHCGECFDVKVKDVWVPVRIEMGDDWYLVGLNVSRLDGLRVRMLE 75 (81)
Q Consensus 3 ~mk~G~L~yd~~~dRY~i~~~~~~~ygGlHCGe~~eV~v~gkWvptRiEm~~~WYLVGl~~~~LeglrVRi~e 75 (81)
+-|.++|+|-.+.+||=|+|+-..--| - ..-.-+|-+-|||-|---...=|+.||.....
T Consensus 135 ~GRRaALFYRtSder~il~~St~~DPG-----~--------qf~nlkm~~fwNWS~SDnk~~Fl~~lRTvQfA 194 (230)
T PF12226_consen 135 TGRRAALFYRTSDERYILLFSTTGDPG-----S--------QFQNLKMLYFWNWSLSDNKTQFLNRLRTVQFA 194 (230)
T ss_pred CCCEEEEEEECCCCEEEEEECCCCCCC-----H--------HHHCEEEEEEECCCCCCCHHHHHHHHHHEEEC
T ss_conf 885578888606850899972589985-----4--------33212468887123266589998664524303
No 2
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 This is central domain B in proteins of the Ferlin family .; GO: 0016021 integral to membrane
Probab=35.08 E-value=6.6 Score=18.14 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=25.9
Q ss_pred EEEECCCCCCCEEEEECC-CCCCCEECCCEEEEEEC
Q ss_conf 267626688000243024-23386414965689888
Q T0624 8 TLFYDTETGRYDIRFDLE-SFYGGLHCGECFDVKVK 42 (81)
Q Consensus 8 ~L~yd~~~dRY~i~~~~~-~~ygGlHCGe~~eV~v~ 42 (81)
++.|-+-- -.+|+||.. ..+.|-+||..-.+|+.
T Consensus 18 RvAY~RIP-a~~vlyS~~~~~~~Gk~CGk~qti~Lk 52 (76)
T PF08150_consen 18 RVAYARIP-AHDVLYSPVGEEARGKWCGKVQTIFLK 52 (76)
T ss_pred EEEEEECC-HHHEEECCCCHHHHCCCCCCEEEEEEE
T ss_conf 79999726-676552478557705453663799987
No 3
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR005132 This is a domain found in some bacterial and eukaryotic lipoproteins. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli . This entry contains a conserved region in the middle of RlpA.; PDB: 2bh0_A 3d30_A 1n10_B 2hcz_X.
Probab=27.50 E-value=6.7 Score=18.11 Aligned_cols=19 Identities=32% Similarity=0.934 Sum_probs=15.4
Q ss_pred ECCCCCCCEECCCEEEEEE
Q ss_conf 0242338641496568988
Q T0624 23 DLESFYGGLHCGECFDVKV 41 (81)
Q Consensus 23 ~~~~~ygGlHCGe~~eV~v 41 (81)
+..||-+|..||+|+++.-
T Consensus 5 ~~s~Y~~g~acG~~~~~~~ 23 (78)
T PF03330_consen 5 SASWYNDGTACGECYDIRC 23 (78)
T ss_dssp -HHHH--------EEEEEE
T ss_pred EHHHCCCCCCCCCCCCCCC
T ss_conf 7435259884732320661
No 4
>PF11720 Inhibitor_I78: Bromelain inhibitor VI Carboxypeptidase inhibitor I68 Peptidase inhibitor I78 family; PDB: 1bi6_H 2bi6_H 2k2z_A 1zli_B 2k2x_A 3d4u_B 1zlh_B 2jto_A 2k2y_A.
Probab=16.10 E-value=24 Score=14.99 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=19.6
Q ss_pred ECCCCCCCEEEEECCCCCCCEECC
Q ss_conf 626688000243024233864149
Q T0624 11 YDTETGRYDIRFDLESFYGGLHCG 34 (81)
Q Consensus 11 yd~~~dRY~i~~~~~~~ygGlHCG 34 (81)
-|...||-.|.+|.........||
T Consensus 37 mDyr~dRLNv~~D~~g~I~~v~CG 60 (60)
T PF11720_consen 37 MDYRPDRLNVEVDEDGRITRVRCG 60 (60)
T ss_pred CCCCCCCEEEEECCCCCEEEEECC
T ss_conf 657878689998899839987459
No 5
>PF09634 DUF2025: Protein of unknown function (DUF2025); PDB: 2hg6_A.
Probab=16.09 E-value=15 Score=16.13 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=21.8
Q ss_pred CCCCCCEEEECCCCCCCEEEEECCCC
Q ss_conf 75322026762668800024302423
Q T0624 2 SEHREGTLFYDTETGRYDIRFDLESF 27 (81)
Q Consensus 2 ~~mk~G~L~yd~~~dRY~i~~~~~~~ 27 (81)
|..-.|-.+||.++++|=.||+-.++
T Consensus 12 ADqL~GFVGfn~KtG~~ivRFSEDsF 37 (106)
T PF09634_consen 12 ADQLKGFVGFNRKTGQHIVRFSEDSF 37 (106)
T ss_dssp GGS----B---S--------S-GGG-
T ss_pred HHHHCCCCCCCCCCCEEEEEECCCCC
T ss_conf 99854313104667418998544234
No 6
>PF10949 DUF2777: Protein of unknown function (DUF2777)
Probab=14.00 E-value=37 Score=13.90 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=15.0
Q ss_pred CEEEEEECCEEEEEEEE
Q ss_conf 65689888956540233
Q T0624 35 ECFDVKVKDVWVPVRIE 51 (81)
Q Consensus 35 e~~eV~v~gkWvptRiE 51 (81)
+-++++-+|+|+|.+.+
T Consensus 47 ~~ie~~~~g~W~~g~l~ 63 (184)
T PF10949_consen 47 QGIEIFRNGRWLKGRLQ 63 (184)
T ss_pred CCEEEEECCCEEEEEEE
T ss_conf 86899988958588980
No 7
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain .; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription; PDB: 2pmz_B 3hkz_J 1wcm_B 1i6h_B 3gtg_B 1sfo_B 1nik_B 1twg_B 1r5u_B 1twc_B ....
Probab=13.95 E-value=21 Score=15.26 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=8.3
Q ss_pred EEECCEEEEEE
Q ss_conf 98889565402
Q T0624 39 VKVKDVWVPVR 49 (81)
Q Consensus 39 V~v~gkWvptR 49 (81)
||+||+|+-..
T Consensus 1 VFlNG~~iG~~ 11 (63)
T PF04566_consen 1 VFLNGVWIGVH 11 (63)
T ss_dssp EEE---B---B
T ss_pred CEECCEEEEEE
T ss_conf 98999999999
No 8
>PF09630 DUF2024: Domain of unknown function (DUF2024); PDB: 2hfq_A.
Probab=13.65 E-value=7.2 Score=17.92 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=23.3
Q ss_pred EEEEEECCEEEEEEEEECCCEEE-EEECCCCCCC
Q ss_conf 56898889565402333474268-7404456462
Q T0624 36 CFDVKVKDVWVPVRIEMGDDWYL-VGLNVSRLDG 68 (81)
Q Consensus 36 ~~eV~v~gkWvptRiEm~~~WYL-VGl~~~~Leg 68 (81)
-|||+|+++=.+.-+|+|.+|-- +|+...++.-
T Consensus 19 HFDVlv~~~~~~~~~~y~k~yL~s~g~~~~~vt~ 52 (81)
T PF09630_consen 19 HFDVLVDDKNHEKAIEYAKEYLKSKGIEGQDVTQ 52 (81)
T ss_dssp EEEEEES---HHHHHHHHHHHHHH---------T
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999954875799999999999855957774450
No 9
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 This family contains a number of fungal cerato-platanin phytotoxic proteins approximately 150 residues long. Cerato-platanin contains four cysteine residues that form two disulphide bonds .
Probab=12.34 E-value=41 Score=13.61 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=26.7
Q ss_pred EECCCEEEEEECCEEEEE-EEEECCCE---------EEEEECCCCCCCEEEEEE
Q ss_conf 414965689888956540-23334742---------687404456462488741
Q T0624 31 LHCGECFDVKVKDVWVPV-RIEMGDDW---------YLVGLNVSRLDGLRVRML 74 (81)
Q Consensus 31 lHCGe~~eV~v~gkWvpt-RiEm~~~W---------YLVGl~~~~LeglrVRi~ 74 (81)
--||.|+.+--+|+.|.. .|.-+..= +|++-++..|..+.|...
T Consensus 57 ~nCG~C~~ltyng~si~vlaID~a~~Gfni~~~Am~~LT~g~a~~lGrv~~~~~ 110 (119)
T PF07249_consen 57 PNCGSCWKLTYNGNSIYVLAIDHAGGGFNISLDAMNDLTNGQAVELGRVDATYT 110 (119)
T ss_pred CCCCCCEEEEECCCEEEEEEEECCCCCEEECHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 888751899989928999999158984575299999861886554325779999
No 10
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria .
Probab=10.57 E-value=25 Score=14.88 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=14.8
Q ss_pred CEEEEEECCEEEEEEEEE
Q ss_conf 656898889565402333
Q T0624 35 ECFDVKVKDVWVPVRIEM 52 (81)
Q Consensus 35 e~~eV~v~gkWvptRiEm 52 (81)
+||.|+||+|=.|-.-|.
T Consensus 34 DCLaVCVn~k~aPEkREF 51 (125)
T PF07417_consen 34 DCLAVCVNVKKAPEKREF 51 (125)
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 504342269888455226
Done!