Query T0624 RUMGNA_01417, Ruminococcus gnavus, 81 residues
Match_columns 81
No_of_seqs 18 out of 20
Neff 2.4
Searched_HMMs 15564
Date Thu Jul 22 14:54:27 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0624.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0624.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hg6a1 d.364.1.1 (A:1-106) Hy 27.3 19 0.0012 16.3 2.2 26 2-27 12-37 (106)
2 d1wc2a1 b.52.1.1 (A:1-180) End 24.9 16 0.001 16.7 1.5 14 30-43 66-79 (180)
3 d1g3pa1 b.37.1.1 (A:1-65) N-te 17.6 12 0.00076 17.4 -0.4 39 12-50 24-62 (65)
4 d1jj2y_ g.41.8.1 (Y:) Ribosoma 15.8 18 0.0012 16.3 0.2 20 29-48 44-63 (73)
5 d1g3pa1 b.37.1.1 (A:1-65) N-te 14.7 15 0.00099 16.7 -0.4 38 12-50 24-62 (65)
6 d1vqoz1 g.41.8.1 (Z:10-82) Rib 12.4 26 0.0017 15.5 0.2 20 29-48 44-63 (73)
7 d1n10a2 b.52.1.3 (A:1003-1145) 10.0 61 0.0039 13.3 1.4 22 22-43 57-78 (143)
8 d1dwka2 d.72.1.1 (A:87-156) Cy 9.9 64 0.0041 13.2 1.5 18 32-49 51-68 (70)
9 d2hfqa1 d.375.1.1 (A:1-85) Hyp 9.1 17 0.0011 16.5 -1.7 31 36-66 19-50 (85)
10 d1pj5a1 b.44.2.1 (A:743-830) N 8.9 72 0.0047 12.9 3.1 24 28-51 51-74 (88)
No 1
>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.30 E-value=19 Score=16.26 Aligned_cols=26 Identities=35% Similarity=0.686 Sum_probs=22.1
Q ss_pred CCCCCCEEEECCCCCCCEEEEECCCC
Q ss_conf 75322026762668800024302423
Q T0624 2 SEHREGTLFYDTETGRYDIRFDLESF 27 (81)
Q Consensus 2 ~~mk~G~L~yd~~~dRY~i~~~~~~~ 27 (81)
|..-.|-.+||.++++|=.||+-.++
T Consensus 12 ADqL~GFVGfn~K~G~~ivRFSEDsF 37 (106)
T d2hg6a1 12 ADALKGFVGFNRKTGRYIVRFSEDSF 37 (106)
T ss_dssp GGSCCCEEEEETTTTEEEEESCGGGC
T ss_pred HHHHCCCCCCCCCCCEEEEEECCCCC
T ss_conf 99854523204667508998544334
No 2
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}
Probab=24.93 E-value=16 Score=16.69 Aligned_cols=14 Identities=36% Similarity=1.092 Sum_probs=11.8
Q ss_pred CEECCCEEEEEECC
Q ss_conf 64149656898889
Q T0624 30 GLHCGECFDVKVKD 43 (81)
Q Consensus 30 GlHCGe~~eV~v~g 43 (81)
|..||.|+||.-.+
T Consensus 66 G~~CG~CyeV~C~~ 79 (180)
T d1wc2a1 66 GQHCGQCIKLTTTG 79 (180)
T ss_dssp CTTTTCEEEEEEEE
T ss_pred CCCCCCEEEEEECC
T ss_conf 62347779999789
No 3
>d1g3pa1 b.37.1.1 (A:1-65) N-terminal domains of the minor coat protein g3p {Bacteriophage M13 [TaxId: 10870]}
Probab=17.55 E-value=12 Score=17.38 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=25.9
Q ss_pred CCCCCCCEEEEECCCCCCCEECCCEEEEEECCEEEEEEE
Q ss_conf 266880002430242338641496568988895654023
Q T0624 12 DTETGRYDIRFDLESFYGGLHCGECFDVKVKDVWVPVRI 50 (81)
Q Consensus 12 d~~~dRY~i~~~~~~~ygGlHCGe~~eV~v~gkWvptRi 50 (81)
+..-|||----.++|+-+|.--|---+--..+-|+|++.
T Consensus 24 ~~t~~~YanyegC~y~aTGV~V~~~d~t~c~~~W~Pvg~ 62 (65)
T d1g3pa1 24 DKTLDRYANYEGCLWNATGVVVCTGDETQCYGTWVPIGL 62 (65)
T ss_dssp TTTCCEEEEETTEEEEEEEEEEECTTSSEEEEEEEEEEE
T ss_pred CCCCCEEEEECCEEEEEEEEEEEECCCCEEEEEEEEEEE
T ss_conf 885554898747798832579981899888764776121
No 4
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=15.85 E-value=18 Score=16.35 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=17.3
Q ss_pred CCEECCCEEEEEECCEEEEE
Q ss_conf 86414965689888956540
Q T0624 29 GGLHCGECFDVKVKDVWVPV 48 (81)
Q Consensus 29 gGlHCGe~~eV~v~gkWvpt 48 (81)
|=.+|..|..+|.+|.|.|.
T Consensus 44 GIW~C~kC~~~~AGgAy~p~ 63 (73)
T d1jj2y_ 44 GIWMCGHCGYKIAGGCYQPE 63 (73)
T ss_dssp TEEEETTTCCEEECCSSSSS
T ss_pred EEEECCCCCCEEECCCCEEC
T ss_conf 88887999988867633304
No 5
>d1g3pa1 b.37.1.1 (A:1-65) N-terminal domains of the minor coat protein g3p {Bacteriophage M13 [TaxId: 10870]} SCOP: d1fgpa_ d2g3pa1
Probab=14.75 E-value=15 Score=16.74 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=27.8
Q ss_pred CCCCCCCEEEEECCCCCCCEE-CCCEEEEEECCEEEEEEE
Q ss_conf 266880002430242338641-496568988895654023
Q T0624 12 DTETGRYDIRFDLESFYGGLH-CGECFDVKVKDVWVPVRI 50 (81)
Q Consensus 12 d~~~dRY~i~~~~~~~ygGlH-CGe~~eV~v~gkWvptRi 50 (81)
+..-|||----.++|+-+|.- |-+-=.|+ .+.|+|++.
T Consensus 24 ~~t~~rYan~egCiy~aTGV~V~~~~~t~c-~~~W~Pv~a 62 (65)
T d1g3pa1 24 DKTLDRYANYEGCLWNATGVVVCTGDETQC-YGTWVPIGL 62 (65)
T ss_dssp TTTCCEEEEETTEEEEEEEEEEECTTSSEE-EEEEEEEEE
T ss_pred CCCCCEEEEECCEEEECCEEEEECCCCCEE-ECCCEEEEE
T ss_conf 886440565337165100007745898543-033103321
No 6
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=12.39 E-value=26 Score=15.47 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.3
Q ss_pred CCEECCCEEEEEECCEEEEE
Q ss_conf 86414965689888956540
Q T0624 29 GGLHCGECFDVKVKDVWVPV 48 (81)
Q Consensus 29 gGlHCGe~~eV~v~gkWvpt 48 (81)
|=.+|..|-..|.+|.|.|.
T Consensus 44 GIW~C~kC~~~~AGGAy~p~ 63 (73)
T d1vqoz1 44 GIWQCSYCDYKFTGGSYKPE 63 (73)
T ss_dssp TEEEETTTCCEEECCSSSSS
T ss_pred EEEECCCCCCEEECCEEEEC
T ss_conf 88888999998737760101
No 7
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=10.02 E-value=61 Score=13.35 Aligned_cols=22 Identities=32% Similarity=0.729 Sum_probs=16.7
Q ss_pred EECCCCCCCEECCCEEEEEECC
Q ss_conf 3024233864149656898889
Q T0624 22 FDLESFYGGLHCGECFDVKVKD 43 (81)
Q Consensus 22 ~~~~~~ygGlHCGe~~eV~v~g 43 (81)
.+..-|..|.-||.|+||.-.+
T Consensus 57 ls~~l~~~g~~CG~cyev~c~~ 78 (143)
T d1n10a2 57 GNTPIFKSGRGCGSCFEIKCTK 78 (143)
T ss_dssp ECHHHHGGGTTSSCEEEEEECS
T ss_pred ECHHHCCCCCCCCCCEEEECCC
T ss_conf 0775716887677664857689
No 8
>d1dwka2 d.72.1.1 (A:87-156) Cyanase C-terminal domain {Escherichia coli [TaxId: 562]} SCOP: d2iu7a2 d2iuoa2
Probab=9.95 E-value=64 Score=13.21 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=14.4
Q ss_pred ECCCEEEEEECCEEEEEE
Q ss_conf 149656898889565402
Q T0624 32 HCGECFDVKVKDVWVPVR 49 (81)
Q Consensus 32 HCGe~~eV~v~gkWvptR 49 (81)
.-|++.-+-.+|||.|-+
T Consensus 51 ~ggdRv~it~~GKfLPyk 68 (70)
T d1dwka2 51 EGGERAVITLDGKYLPTK 68 (70)
T ss_dssp TSSEEEEEEEEEEEEECC
T ss_pred CCCCEEEEEEECCCCCCC
T ss_conf 999878888507516765
No 9
>d2hfqa1 d.375.1.1 (A:1-85) Hypothetical protein NE1680 {Nitrosomonas europaea [TaxId: 915]}
Probab=9.08 E-value=17 Score=16.51 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=20.8
Q ss_pred EEEEEECCEEEEEEEEECCCEEEE-EECCCCC
Q ss_conf 568988895654023334742687-4044564
Q T0624 36 CFDVKVKDVWVPVRIEMGDDWYLV-GLNVSRL 66 (81)
Q Consensus 36 ~~eV~v~gkWvptRiEm~~~WYLV-Gl~~~~L 66 (81)
-|||+++.+=.++-+++|.+|--. |....++
T Consensus 19 HFDVlv~~~d~~~a~~yake~L~~ig~~~~~v 50 (85)
T d2hfqa1 19 HFDVFTDVRDDKKAIEFAKQWLSSIGEEGATV 50 (85)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHTCCCSCC
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99998378877999999999999827578975
No 10
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=8.94 E-value=72 Score=12.91 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=18.9
Q ss_pred CCCEECCCEEEEEECCEEEEEEEE
Q ss_conf 386414965689888956540233
Q T0624 28 YGGLHCGECFDVKVKDVWVPVRIE 51 (81)
Q Consensus 28 ygGlHCGe~~eV~v~gkWvptRiE 51 (81)
...+.-|+.++|.++|+++++++.
T Consensus 51 ~~~~~~g~~~~V~~~g~~~~a~v~ 74 (88)
T d1pj5a1 51 PGTVSVGDSVDIEYFGRRITATVT 74 (88)
T ss_dssp ETTCCTTCEEEEEETTEEEEEEEE
T ss_pred ECCCCCCCEEEEEECCEEEEEEEE
T ss_conf 037689999999999989878998
Done!