Query T0625 YP_612324.1, SILICIBACTER SP. TM1040, 233 residues
Match_columns 233
No_of_seqs 102 out of 379
Neff 5.4
Searched_HMMs 22458
Date Thu Jul 22 15:00:30 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0625.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0625.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3di4_A Uncharacterized protein 100.0 0 0 471.0 19.6 201 26-228 41-263 (286)
2 1xmb_A IAA-amino acid hydrolas 68.2 4 0.00018 19.6 3.5 12 190-201 84-95 (418)
3 2npi_A Protein CLP1; CLP1-PCF1 47.1 10 0.00046 16.9 2.7 34 31-64 36-69 (460)
4 1t70_A Phosphatase; crystal, X 44.5 14 0.00062 16.1 4.8 93 38-132 95-213 (255)
5 3ksc_A LEGA class, prolegumin; 27.6 24 0.0011 14.6 2.0 26 44-74 110-135 (496)
6 1t71_A Phosphatase, conserved; 26.9 27 0.0012 14.2 2.8 67 41-107 105-194 (281)
7 1k4n_A Protein EC4020, protein 26.8 10 0.00045 16.9 -0.0 50 65-114 37-88 (192)
8 2ofc_A Sclerotium rolfsii lect 25.6 24 0.0011 14.5 1.7 35 43-80 31-65 (142)
9 2k14_A YUAF protein; NFED-like 19.0 15 0.00067 15.8 -0.4 32 33-64 45-76 (84)
10 1s9a_A Pyrocatechase, chloroca 18.1 40 0.0018 13.1 2.3 38 152-191 132-169 (257)
No 1
>3di4_A Uncharacterized protein DUF1989; YP_165628.1, protein of unknown function (DUF1989), structural genomics; 1.60A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=0 Score=470.97 Aligned_cols=201 Identities=26% Similarity=0.373 Sum_probs=189.4
Q ss_pred CCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEECCCCCEEEECCC-
Q ss_conf 3322345324774289843899718878999737876114455763457422347268987412032146865450689-
Q T0625 26 EGGRLRPEATYTIPARQGRAIRMAQGEALMVINRDGSQIGDFWAFVEGDCGEYLSMEHLRPTLRRVSPRPGDVLVSNRR- 104 (233)
Q Consensus 26 ~~~~~~~~~~~tip~g~~~a~~v~~G~~lrI~d~~G~q~~d~~~~na~d~~Erl~~~~T~~~~~~~~l~~G~~L~S~~~- 104 (233)
..+...++++++||+|++|+++|++||.|||+|++|+||+|+|+||++|+.||||++||++ ++++||++|++|||||+
T Consensus 41 ~~~~a~~v~e~~Ip~~~~~a~~vk~Gq~lRI~d~eG~Qv~D~~~~na~d~~Er~~~~~Tr~-~~~~~l~~G~~L~S~~g~ 119 (286)
T 3di4_A 41 ARASARKTGEVLVPPREGRCFEVKAGQFFRISSVEGPQVGDLNLHNLHDLTERFFSGKTRA-LHGTHVTTGERLWSNLPY 119 (286)
T ss_dssp HHHTCEEEEEEEECBTCEEEEEECTTCEEEEEECSSCCCEEEEEEETTEEEEEBCHHHHHH-HHCSBCCTTCEEEBCTTT
T ss_pred HHHHHHHCEEEEECCCCCEEEEECCCCEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHH-HCCEECCCCCEEEECCCC
T ss_conf 5421201115997899724999889988999838999168889961788612346566676-535113679885758988
Q ss_pred -CEEEEEEECCCCCC----------CCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHH-----CCCCCCCCCCCEEE
Q ss_conf -84899994578870----------433247889799876416778866578999999971-----78855346511244
Q T0625 105 -RPILTLLEDSSPGV----------HDTLVASCDVHRYAQLGHEGYHDNCTDNLRMALGAL-----GLRPTTVPCPLNLW 168 (233)
Q Consensus 105 -rpm~tIv~DT~~G~----------HD~l~~~c~~~~y~~~~~~~~h~nc~dNl~~al~k~-----Gl~~~di~~~lNlF 168 (233)
|||+|||+||+ || ||+|+++|++++|+.+|+.++|+||+|||+.+|+++ |+.+++++++||||
T Consensus 120 ~Rpl~tIv~DT~-G~~~~d~~gg~~HD~l~~~C~~~~~~~~~g~~~h~~C~dN~~~ala~~~~~~~g~~~~~v~~~lN~F 198 (286)
T 3di4_A 120 LRPMATIIEDTL-GWYGIDQYGGSVHDVIGTRCDPYTGNLLAGGHYHHCCHSNLTRALADHTGLPLHEAEMLVHDVLNVF 198 (286)
T ss_dssp CCEEEEEEEETT-TTCCCCTTSCEEEESSCCCCCHHHHHHHHCSCCSCSHHHHHHHHHHHHHCCCHHHHHTTCCCCEEEE
T ss_pred CCEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
T ss_conf 750499984477-7645466677664443677798999864088888628889999998715765687755667625845
Q ss_pred ECCCCCCC-CEEEEECCCCCCCCEEEEEECCCEEEEEECCC----CCCCCCCCCCCCCEEEEEEE
Q ss_conf 22521788-71787158889998799997245355222178----85667788887761689986
Q T0625 169 MNTPVVEG-GAMEWRPPVSRRGDHVLFRAELDVVVVISCCP----MDLLPINGEEAQPRALDVRL 228 (233)
Q Consensus 169 m~v~v~~d-G~l~~~~~~s~aGdyV~LrAemDllV~lSaCP----~~l~p~n~~~~~P~~i~v~~ 228 (233)
|||+|++| |.++|++++|+|||||+|||||||||++|||| |+++|+|.|+|+|+.|+|+.
T Consensus 199 m~v~v~~d~G~~~~~~~~s~pGdyVelrAEmDllv~lSaCP~gd~~~~~~~~~~~~~Pl~vev~~ 263 (286)
T 3di4_A 199 MCTGFTRDTGQYFMKASPVRPGDYLEFFAEIDLLGNLSACPGGDCSSEHSSDTASCHPLLVEIFA 263 (286)
T ss_dssp EEEEECTTTCCEEEECCCCCTTCEEEEEESSCEEEEEEECTTTTSCCC-----CCCCCEEEEEEE
T ss_pred ECCCCCCCCCCEEECCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 35850378985682378889999899998166189992699986765688888885162999845
No 2
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG, AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A
Probab=68.22 E-value=4 Score=19.59 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=4.1
Q ss_pred CEEEEEECCCEE
Q ss_conf 879999724535
Q T0625 190 DHVLFRAELDVV 201 (233)
Q Consensus 190 dyV~LrAemDll 201 (233)
..|-||||||.|
T Consensus 84 p~i~~~a~~Dal 95 (418)
T 1xmb_A 84 PFVALRADMDAL 95 (418)
T ss_dssp CEEEEEEECCCB
T ss_pred CEEEEEECCCCC
T ss_conf 879997052002
No 3
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=47.14 E-value=10 Score=16.92 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=28.7
Q ss_pred CCCEEEEECCCCCEEEEECCCCEEEEEECCCCCE
Q ss_conf 4532477428984389971887899973787611
Q T0625 31 RPEATYTIPARQGRAIRMAQGEALMVINRDGSQI 64 (233)
Q Consensus 31 ~~~~~~tip~g~~~a~~v~~G~~lrI~d~~G~q~ 64 (233)
....+.+++.++=|-++|..|+.|+|.-++|.+-
T Consensus 36 ~~~~~~~l~~~~E~R~ev~~~~~~~i~l~~G~AE 69 (460)
T 2npi_A 36 NEWHKLVIPKGSDWQIDLKAEGKLIVKVNSGIVE 69 (460)
T ss_dssp SSCEEEECCTTEECCEECCTTCEEEEEEEESCEE
T ss_pred CCCEEEEECCCCEEEEEECCCCEEEEEEEEEEEE
T ss_conf 9877998479966899978998399999644699
No 4
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.30A {Deinococcus radiodurans R1} SCOP: d.159.1.9
Probab=44.51 E-value=14 Score=16.05 Aligned_cols=93 Identities=19% Similarity=0.155 Sum_probs=64.7
Q ss_pred ECCCCCEEEEECCCCEEEEEECCCCCE---------------------EEEEEECCCCCCCCCCHHHHHHHCCCEECCCC
Q ss_conf 428984389971887899973787611---------------------44557634574223472689874120321468
Q T0625 38 IPARQGRAIRMAQGEALMVINRDGSQI---------------------GDFWAFVEGDCGEYLSMEHLRPTLRRVSPRPG 96 (233)
Q Consensus 38 ip~g~~~a~~v~~G~~lrI~d~~G~q~---------------------~d~~~~na~d~~Erl~~~~T~~~~~~~~l~~G 96 (233)
.| |.||...-..|..+.|+++-|+-- .-++=|+|+..+|.+.+++.++-.=++.+++.
T Consensus 95 ~p-G~G~~i~~~~g~ki~ViNl~Gr~fM~~~d~PF~~~d~~l~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrvsaVvGTH 173 (255)
T 1t70_A 95 TP-GVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTVFVDFHAEATSEKEAMGWHLAGRVAAVIGTH 173 (255)
T ss_dssp CS-SCSEEEEECSSSEEEEEEEECCTTSCCCSCHHHHHHHHTTCSSCCEEEEEEECSCHHHHHHHHHHHTTSSSEEEEES
T ss_pred CC-CCEEEEEEECCCCEEEEEECCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99-85089995065639999970544267666879999999864568849999034048778888842348679998568
Q ss_pred CEEEECCCCEEE---EEEECC--CCCCCCCCCCCCCHHHHH
Q ss_conf 654506898489---999457--887043324788979987
Q T0625 97 DVLVSNRRRPIL---TLLEDS--SPGVHDTLVASCDVHRYA 132 (233)
Q Consensus 97 ~~L~S~~~rpm~---tIv~DT--~~G~HD~l~~~c~~~~y~ 132 (233)
.+.-++.-|+|= --+.|- | |.+|...|.--....+
T Consensus 174 THV~TaD~rILp~GTAyiTDvGMt-G~~~SVIG~~~e~~i~ 213 (255)
T 1t70_A 174 THVPTADTRILKGGTAYQTDAGFT-GPHDSIIGSAIEGPLQ 213 (255)
T ss_dssp SCSCBSCCEEETTTEEEESCCCCB-EESSSBTTBCSHHHHH
T ss_pred CCCCCCCCEECCCCCEEEECCCCC-CCHHHHCCCCHHHHHH
T ss_conf 553255326737785898248552-0535513767388999
No 5
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=27.63 E-value=24 Score=14.56 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=15.3
Q ss_pred EEEEECCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 3899718878999737876114455763457
Q T0625 44 RAIRMAQGEALMVINRDGSQIGDFWAFVEGD 74 (233)
Q Consensus 44 ~a~~v~~G~~lrI~d~~G~q~~d~~~~na~d 74 (233)
+...+++|++++| .+.+-+|+||..|
T Consensus 110 kv~~lr~GDViai-----PAG~~~w~yN~g~ 135 (496)
T 3ksc_A 110 KVNRFREGDIIAV-----PTGIVFWMYNDQD 135 (496)
T ss_dssp CEEEECTTEEEEE-----CTTCEEEEEECSS
T ss_pred HHCCCCCCCEEEE-----CCCCEEEEEECCC
T ss_conf 6434665998997-----7985689995889
No 6
>1t71_A Phosphatase, conserved; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=26.86 E-value=27 Score=14.23 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=48.4
Q ss_pred CCCEEEEECCCCEEEEEECCCCCEE-----E------------------EEEECCCCCCCCCCHHHHHHHCCCEECCCCC
Q ss_conf 9843899718878999737876114-----4------------------5576345742234726898741203214686
Q T0625 41 RQGRAIRMAQGEALMVINRDGSQIG-----D------------------FWAFVEGDCGEYLSMEHLRPTLRRVSPRPGD 97 (233)
Q Consensus 41 g~~~a~~v~~G~~lrI~d~~G~q~~-----d------------------~~~~na~d~~Erl~~~~T~~~~~~~~l~~G~ 97 (233)
|.|+...-..|..+.|+++-|+..- + ++=|+|+..+|.+-+++-++-.=++.+++..
T Consensus 105 G~G~~i~~~~~~~i~Vinl~Gr~fm~~~~~~~pf~~~~~~~~~~~~~~iiVDfHAEATSEK~A~g~~lDGrVsaVvGTHT 184 (281)
T 1t71_A 105 GQGSLVFEFNKAKIRITNLLGTSVPLPFKTTNPFKVLKELILKRDCDLHIVDFHAETTSEKNAFCMAFDGYVTTIFGTHT 184 (281)
T ss_dssp SBSEEEEECSSCEEEEEEEECTTSCCSSCBCCHHHHHHHHHTTCCCSEEEEEEECSCHHHHHHHHHHHTTTSSEEEEESS
T ss_pred CCCEEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHEECCCCEEEEEECCC
T ss_conf 87379997033102566441532244444537777777764035788799980252187776776001796899983686
Q ss_pred EEEECCCCEE
Q ss_conf 5450689848
Q T0625 98 VLVSNRRRPI 107 (233)
Q Consensus 98 ~L~S~~~rpm 107 (233)
+.-+..-|+|
T Consensus 185 HV~TaD~rIL 194 (281)
T 1t71_A 185 HVPSADLRIT 194 (281)
T ss_dssp SSCCTTCEEC
T ss_pred CCCCCCCCCC
T ss_conf 7425764103
No 7
>1k4n_A Protein EC4020, protein YECM; structural genomics, A NEW fold of protein, PSI, protein structure initiative; 1.60A {Escherichia coli} SCOP: d.32.1.5
Probab=26.83 E-value=10 Score=16.94 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=40.8
Q ss_pred EEEEEECCCCCCCCCCHHHHHHHCCCEECCCCCEEEECC--CCEEEEEEECC
Q ss_conf 445576345742234726898741203214686545068--98489999457
Q T0625 65 GDFWAFVEGDCGEYLSMEHLRPTLRRVSPRPGDVLVSNR--RRPILTLLEDS 114 (233)
Q Consensus 65 ~d~~~~na~d~~Erl~~~~T~~~~~~~~l~~G~~L~S~~--~rpm~tIv~DT 114 (233)
.|+-.|.++...=|.|...|-+.-+...++-|..|-.|+ |||++.|-=+.
T Consensus 37 ldl~~~~~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~q 88 (192)
T 1k4n_A 37 LNITPLTADHISLRCHQNATAERWRRGFEQCGELLSENMINGRPICLFKLHE 88 (192)
T ss_dssp CCCTTCEEEEEEEECSCHHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCHHHHCCEECCEEEEEEECCC
T ss_conf 9811065667898608999999999999973633124745881589998589
No 8
>2ofc_A Sclerotium rolfsii lectin; dual specificity, sugar binding protein; 1.11A {Athelia rolfsii} PDB: 2ofd_A* 2ofe_A*
Probab=25.56 E-value=24 Score=14.54 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=20.5
Q ss_pred CEEEEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCC
Q ss_conf 43899718878999737876114455763457422347
Q T0625 43 GRAIRMAQGEALMVINRDGSQIGDFWAFVEGDCGEYLS 80 (233)
Q Consensus 43 ~~a~~v~~G~~lrI~d~~G~q~~d~~~~na~d~~Erl~ 80 (233)
|-.|...+|+ .|--..|.-...++-|.. +..|.|.
T Consensus 31 ggtW~e~~g~--~vLtmggSGTSG~LRf~~-~~Ge~F~ 65 (142)
T 2ofc_A 31 GGTWTITDDQ--HVLTMGGSGTSGTLRFHA-DNGESFT 65 (142)
T ss_dssp CEEEEEETTE--EEEEESSSSCEEEEEEEE-TTSCEEE
T ss_pred CCEECCCCCE--EEEEECCCCCCCEEEEEC-CCCCEEE
T ss_conf 9524155883--999962677630588864-8996799
No 9
>2k14_A YUAF protein; NFED-like protein, cellular stress, unknown function; NMR {Bacillus subtilis}
Probab=19.04 E-value=15 Score=15.83 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=0.0
Q ss_pred CEEEEECCCCCEEEEECCCCEEEEEECCCCCE
Q ss_conf 32477428984389971887899973787611
Q T0625 33 EATYTIPARQGRAIRMAQGEALMVINRDGSQI 64 (233)
Q Consensus 33 ~~~~tip~g~~~a~~v~~G~~lrI~d~~G~q~ 64 (233)
.|..+.+|.+.--..+++|+.++|++.+|...
T Consensus 45 ~~~~~~~A~s~~~~~i~~G~~V~Vv~v~g~~L 76 (84)
T 2k14_A 45 GGTISKSAVSFDNQQISYGTTVLVVDINNGVL 76 (84)
T ss_dssp TSCCCEEEEETTSCCBCSSCEEEEEEEETTEE
T ss_pred CCEEEEEEECCCCCCCCCCCEEEEEEEECCEE
T ss_conf 85599989839996048999899999989999
No 10
>1s9a_A Pyrocatechase, chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGP TAM; 2.47A {Rhodococcus opacus} SCOP: b.3.6.1
Probab=18.11 E-value=40 Score=13.10 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCE
Q ss_conf 9717885534651124422521788717871588899987
Q T0625 152 GALGLRPTTVPCPLNLWMNTPVVEGGAMEWRPPVSRRGDH 191 (233)
Q Consensus 152 ~k~Gl~~~di~~~lNlFm~v~v~~dG~l~~~~~~s~aGdy 191 (233)
+.|.......++.+|++-.+..|++|++.|.. -+||-|
T Consensus 132 G~Y~~~~~~~~~~~~~rG~~~Td~~G~y~F~T--i~P~~Y 169 (257)
T 1s9a_A 132 GNYSFFSPALPDQYLLRGRVVPAEDGSIEFHS--IRPVPY 169 (257)
T ss_dssp SCCTTSCTTSCSSCCSEEEECCCTTSEEEEEE--ECCCCE
T ss_pred CEECCCCCCCCCCCCCCEEEEECCCCCEEEEE--ECCCCC
T ss_conf 50067666889875650027778998299999--756775
Done!