Query         T0625 YP_612324.1, SILICIBACTER SP. TM1040, 233 residues
Match_columns 233
No_of_seqs    102 out of 379
Neff          5.4 
Searched_HMMs 15564
Date          Thu Jul 22 15:02:04 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0625.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0625.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1ysja1 c.56.5.4 (A:4-177,A:29  56.0     6.4 0.00041   17.2   5.8   54  141-205    25-78  (261)
  2 d1t71a_ d.159.1.9 (A:) Hypothe  35.2      13 0.00086   15.1   2.8   85   41-126   105-218 (281)
  3 d1t70a_ d.159.1.9 (A:) Putativ  35.1      13 0.00087   15.1   4.8   93   38-132    95-213 (255)
  4 d2z06a1 d.159.1.10 (A:1-252) H  31.2      16   0.001   14.7   3.9   89   36-126    90-204 (252)
  5 d1k4na_ d.32.1.5 (A:) Hypothet  27.9     6.6 0.00042   17.1  -0.0   50   65-114    37-88  (190)
  6 d1e0ta1 b.58.1.1 (A:70-167) Py  21.6      23  0.0015   13.6   5.7   58   43-114    11-69  (98)
  7 d3bvua1 a.8.3.1 (A:412-522) Go  20.8      19  0.0012   14.1   1.2   49  118-167    59-110 (111)
  8 d1xmba1 c.56.5.4 (A:37-215,A:3  18.3      27  0.0018   13.1   6.3   49  142-203    34-82  (273)
  9 d2q09a1 b.92.1.10 (A:4-65,A:36  18.1      28  0.0018   13.1   1.9   23   55-77     59-81  (103)
 10 d1zvya1 b.1.1.1 (A:2-125) Came  16.8      28  0.0018   13.0   1.4   62   46-115     9-74  (124)

No 1  
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}
Probab=56.02  E-value=6.4  Score=17.21  Aligned_cols=54  Identities=19%  Similarity=0.245  Sum_probs=30.4

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCEEEEEECCCEEEEEE
Q ss_conf             66578999999971788553465112442252178871787158889998799997245355222
Q T0625           141 DNCTDNLRMALGALGLRPTTVPCPLNLWMNTPVVEGGAMEWRPPVSRRGDHVLFRAELDVVVVIS  205 (233)
Q Consensus       141 ~nc~dNl~~al~k~Gl~~~di~~~lNlFm~v~v~~dG~l~~~~~~s~aGdyV~LrAemDllV~lS  205 (233)
                      ....+.+...|.++|+...++.          .-..|-+....+ .++|-.|-||||||-|-+.+
T Consensus        25 ~~T~~~i~~~L~~~G~~v~~~~----------~~~tgv~a~~~g-~~~gp~Ialrad~DALp~~e   78 (261)
T d1ysja1          25 VETTKKIRRWLEEEQIEILDVP----------QLKTGVIAEIKG-REDGPVIAIRADIDALPIQE   78 (261)
T ss_dssp             HHHHHHHHHHHHHTTCEECCCT----------TCSSCEEEEEEC-SSCCCEEEEEEECCCBSCCC
T ss_pred             HHHHHHHHHHHHHCCCEEEEEC----------CCCEEEEEEECC-CCCCCEEEEEECCCCCCHHH
T ss_conf             9999999999998799289955----------775499999879-87674589973312011012


No 2  
>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=35.24  E-value=13  Score=15.13  Aligned_cols=85  Identities=12%  Similarity=0.044  Sum_probs=55.1

Q ss_pred             CCCEEEEECCCCEEEEEECCCCCEE-----------------------EEEEECCCCCCCCCCHHHHHHHCCCEECCCCC
Q ss_conf             9843899718878999737876114-----------------------45576345742234726898741203214686
Q T0625            41 RQGRAIRMAQGEALMVINRDGSQIG-----------------------DFWAFVEGDCGEYLSMEHLRPTLRRVSPRPGD   97 (233)
Q Consensus        41 g~~~a~~v~~G~~lrI~d~~G~q~~-----------------------d~~~~na~d~~Erl~~~~T~~~~~~~~l~~G~   97 (233)
                      |.||...-..|..+.|+++-|...-                       -++=|+|+..+|.+.+++.++-.=++.+++..
T Consensus       105 G~G~~i~~~~~~~i~Vinl~G~~fm~~~~~~~pf~~~~~~~~~~~~d~i~VDfHaEATSEK~A~g~~lDGrvsaVvGTHT  184 (281)
T d1t71a_         105 GQGSLVFEFNKAKIRITNLLGTSVPLPFKTTNPFKVLKELILKRDCDLHIVDFHAETTSEKNAFCMAFDGYVTTIFGTHT  184 (281)
T ss_dssp             SBSEEEEECSSCEEEEEEEECTTSCCSSCBCCHHHHHHHHHTTCCCSEEEEEEECSCHHHHHHHHHHHTTTSSEEEEESS
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHEEEECCCEEEEEECCC
T ss_conf             74289997165433201221642244445637887777764046787699980351066552330440796899982575


Q ss_pred             EEEECCCCEEE---EEEECC--CCCC-CCCCCCCC
Q ss_conf             54506898489---999457--8870-43324788
Q T0625            98 VLVSNRRRPIL---TLLEDS--SPGV-HDTLVASC  126 (233)
Q Consensus        98 ~L~S~~~rpm~---tIv~DT--~~G~-HD~l~~~c  126 (233)
                      +.=+..-|+|-   --+.|-  | |. +|...|.-
T Consensus       185 HV~TaD~rILp~GTAyiTDvGMt-G~~ydSVIG~~  218 (281)
T d1t71a_         185 HVPSADLRITPKGSAYITDVGMC-GPGFGSVIGAN  218 (281)
T ss_dssp             SSCCTTCEECTTSCEEESCCCEE-BCCTTSBTTBC
T ss_pred             CCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCC
T ss_conf             44157640126772898357554-47667420447


No 3  
>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus radiodurans [TaxId: 1299]}
Probab=35.15  E-value=13  Score=15.12  Aligned_cols=93  Identities=20%  Similarity=0.167  Sum_probs=64.2

Q ss_pred             ECCCCCEEEEECCCCEEEEEECCCCCE---------------------EEEEEECCCCCCCCCCHHHHHHHCCCEECCCC
Q ss_conf             428984389971887899973787611---------------------44557634574223472689874120321468
Q T0625            38 IPARQGRAIRMAQGEALMVINRDGSQI---------------------GDFWAFVEGDCGEYLSMEHLRPTLRRVSPRPG   96 (233)
Q Consensus        38 ip~g~~~a~~v~~G~~lrI~d~~G~q~---------------------~d~~~~na~d~~Erl~~~~T~~~~~~~~l~~G   96 (233)
                      .|+ .||...-..|..+.|+++-|+--                     .-++=|+++..+|..-+++.++-.=++.+++.
T Consensus        95 ~PG-~G~~i~~~~g~ki~ViNl~Gr~fM~~~d~PF~~~d~~l~~~~~~~i~VDfHaEaTSEK~A~g~~ldGrvsav~GTH  173 (255)
T d1t70a_          95 TPG-VGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTVFVDFHAEATSEKEAMGWHLAGRVAAVIGTH  173 (255)
T ss_dssp             CSS-CSEEEEECSSSEEEEEEEECCTTSCCCSCHHHHHHHHTTCSSCCEEEEEEECSCHHHHHHHHHHHTTSSSEEEEES
T ss_pred             CCC-CEEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             998-6399996066758999941411567666879999999864678859998044147778888853437679998467


Q ss_pred             CEEEECCCCEEE--E-EEECC--CCCCCCCCCCCCCHHHHH
Q ss_conf             654506898489--9-99457--887043324788979987
Q T0625            97 DVLVSNRRRPIL--T-LLEDS--SPGVHDTLVASCDVHRYA  132 (233)
Q Consensus        97 ~~L~S~~~rpm~--t-Iv~DT--~~G~HD~l~~~c~~~~y~  132 (233)
                      .+.-++.-|+|-  | -+.|-  | |.+|...|.--....+
T Consensus       174 THV~TaD~rIlp~GTay~TDvGMt-G~~~SVIG~~~~~~i~  213 (255)
T d1t70a_         174 THVPTADTRILKGGTAYQTDAGFT-GPHDSIIGSAIEGPLQ  213 (255)
T ss_dssp             SCSCBSCCEEETTTEEEESCCCCB-EESSSBTTBCSHHHHH
T ss_pred             CCCCCCCCEEECCCCEEEECCCCC-CCHHHHCCCCHHHHHH
T ss_conf             221255325714771898057552-0545612767289999


No 4  
>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {Thermus thermophilus [TaxId: 274]}
Probab=31.17  E-value=16  Score=14.70  Aligned_cols=89  Identities=10%  Similarity=0.068  Sum_probs=60.0

Q ss_pred             EEECCCCCEEEEECCCCEEEEEECCCCC---------------------EEEEEEECCCCCCCCCCHHHHHHHCCCEECC
Q ss_conf             7742898438997188789997378761---------------------1445576345742234726898741203214
Q T0625            36 YTIPARQGRAIRMAQGEALMVINRDGSQ---------------------IGDFWAFVEGDCGEYLSMEHLRPTLRRVSPR   94 (233)
Q Consensus        36 ~tip~g~~~a~~v~~G~~lrI~d~~G~q---------------------~~d~~~~na~d~~Erl~~~~T~~~~~~~~l~   94 (233)
                      ...|+..+.-+.. .|..+.|+++-|.-                     ..-++=|+|+..+|..-+++.++-.=++.++
T Consensus        90 ~~~PG~G~~i~~~-~g~ki~ViNl~Gr~fm~~~d~PF~~~d~~~~~~~~~~i~VDfHaEaTSEK~A~g~~ldGrvsavvG  168 (252)
T d2z06a1          90 PGTPGKGFWRLEV-GGESLLFVQVMGRIFMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLG  168 (252)
T ss_dssp             SSCSSCSEEEEEE-TTEEEEEEEEECCTTSCCCCCHHHHHHHHHHHCCCSEEEEEEECSCHHHHHHHHHHHBTTBSEEEE
T ss_pred             CCCCCCCEEEECC-CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHEEEEEECCCCEEEEEE
T ss_conf             7887773799814-990688887313136787789899999998626765899984562154332124760797899971


Q ss_pred             CCCEEEECCCCEEE---EEEECC--CCCCCCCCCCCC
Q ss_conf             68654506898489---999457--887043324788
Q T0625            95 PGDVLVSNRRRPIL---TLLEDS--SPGVHDTLVASC  126 (233)
Q Consensus        95 ~G~~L~S~~~rpm~---tIv~DT--~~G~HD~l~~~c  126 (233)
                      +..+.-+..-|+|=   --+.|-  | |..|...|.-
T Consensus       169 THTHV~TaD~rILp~GTayiTDvGM~-G~~~SVIG~~  204 (252)
T d2z06a1         169 THTHVPTLDATRLPKGTLYQTDVGMT-GTYHSIIGGE  204 (252)
T ss_dssp             ESSCSCBSCCEECTTSCEEESCCCCB-EESSSBTTBC
T ss_pred             CCCCCCCCCCEEECCCEEEECCCCCC-CCHHHHCCCC
T ss_conf             67545565447832770898057653-3656641767


No 5  
>d1k4na_ d.32.1.5 (A:) Hypothetical protein YecM (EC4020) {Escherichia coli [TaxId: 562]}
Probab=27.87  E-value=6.6  Score=17.13  Aligned_cols=50  Identities=16%  Similarity=0.100  Sum_probs=40.3

Q ss_pred             EEEEEECCCCCCCCCCHHHHHHHCCCEECCCCCEEEECC--CCEEEEEEECC
Q ss_conf             445576345742234726898741203214686545068--98489999457
Q T0625            65 GDFWAFVEGDCGEYLSMEHLRPTLRRVSPRPGDVLVSNR--RRPILTLLEDS  114 (233)
Q Consensus        65 ~d~~~~na~d~~Erl~~~~T~~~~~~~~l~~G~~L~S~~--~rpm~tIv~DT  114 (233)
                      .|+-.|.++...=|.|...|-+.-+..++.-|..|-.|+  |||++.+-=+.
T Consensus        37 ldl~~~~~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~~   88 (190)
T d1k4na_          37 LNITPLTADHISLRCHQNATAERWRRGFEQCGELLSENMINGRPICLFKLHE   88 (190)
T ss_dssp             CCCTTCEEEEEEEECSCHHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCHHCCCCEEEEEECCHHHHHHHHHHHHHHCHHHHCCEECCEEEEEEECCC
T ss_conf             8702066768998508999999999999973633134742780589997588


No 6  
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli [TaxId: 562]}
Probab=21.61  E-value=23  Score=13.59  Aligned_cols=58  Identities=9%  Similarity=0.154  Sum_probs=36.5

Q ss_pred             CEEEEECCCCEEEEEECCCC-CEEEEEEECCCCCCCCCCHHHHHHHCCCEECCCCCEEEECCCCEEEEEEECC
Q ss_conf             43899718878999737876-1144557634574223472689874120321468654506898489999457
Q T0625            43 GRAIRMAQGEALMVINRDGS-QIGDFWAFVEGDCGEYLSMEHLRPTLRRVSPRPGDVLVSNRRRPILTLLEDS  114 (233)
Q Consensus        43 ~~a~~v~~G~~lrI~d~~G~-q~~d~~~~na~d~~Erl~~~~T~~~~~~~~l~~G~~L~S~~~rpm~tIv~DT  114 (233)
                      +..+.+++||.++|+.-+.. .....+..         +.+.-     .-.+.+|+.++=|.|...+.|++-+
T Consensus        11 ~~~i~L~~G~~v~i~~~~~~~~~~~~i~v---------~~~~l-----~~~v~~Gd~IlidDG~i~l~V~~v~   69 (98)
T d1e0ta1          11 GNDVSLKAGQTFTFTTDKSVIGNSEMVAV---------TYEGF-----TTDLSVGNTVLVDDGLIGMEVTAIE   69 (98)
T ss_dssp             GCCEEECTTCEEEEESCTTCCBBTTEEEB---------SCTTH-----HHHCCTTCEEEETTTTEEEEEEEEE
T ss_pred             CCEEEECCCCEEEEEECCCCCCCCCEEEE---------CHHHH-----HHHHCCCCEEEECCCCEEEEEEECC
T ss_conf             98689728999999828865897799994---------38996-----6651688499976772268996336


No 7  
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=20.76  E-value=19  Score=14.11  Aligned_cols=49  Identities=14%  Similarity=0.241  Sum_probs=30.4

Q ss_pred             CCCCCCCCCCHHHHHHH---CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf             04332478897998764---167788665789999999717885534651124
Q T0625           118 VHDTLVASCDVHRYAQL---GHEGYHDNCTDNLRMALGALGLRPTTVPCPLNL  167 (233)
Q Consensus       118 ~HD~l~~~c~~~~y~~~---~~~~~h~nc~dNl~~al~k~Gl~~~di~~~lNl  167 (233)
                      .||.|.|.+..+-|...   ..++ ...|..-+..++..+-..+....+.+||
T Consensus        59 ~HD~I~GTs~~~V~~Dy~~rl~~~-~~~~~~li~~al~~Ll~~~~~~~~d~~f  110 (111)
T d3bvua1          59 HHDGITGTAKTHVVVDYEQRMQEA-LKACQMVMQQSVYRLLTKPSIYSPDFSF  110 (111)
T ss_dssp             BTTTTTSCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTBCTTTCCCCTTS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             123446667089999999999999-9999999999999998289878889888


No 8  
>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=18.34  E-value=27  Score=13.13  Aligned_cols=49  Identities=20%  Similarity=0.384  Sum_probs=25.3

Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCEEEEEECCCEEEE
Q ss_conf             65789999999717885534651124422521788717871588899987999972453552
Q T0625           142 NCTDNLRMALGALGLRPTTVPCPLNLWMNTPVVEGGAMEWRPPVSRRGDHVLFRAELDVVVV  203 (233)
Q Consensus       142 nc~dNl~~al~k~Gl~~~di~~~lNlFm~v~v~~dG~l~~~~~~s~aGdyV~LrAemDllV~  203 (233)
                      -..+.+...|.++|+....           ++...|-+....  .+.|..|-|||+||-|-+
T Consensus        34 ~T~~~i~~~L~~~g~~~~~-----------~~~~tg~~a~~~--~~~~~~i~~rad~Dalp~   82 (273)
T d1xmba1          34 ETSKLIRSELELIGIKYRY-----------PVAITGVIGYIG--TGEPPFVALRADMDALPI   82 (273)
T ss_dssp             HHHHHHHHHHHHHTCCEEE-----------EETTTEEEEEEE--SSSSCEEEEEEECCCBSC
T ss_pred             HHHHHHHHHHHHCCCEEEE-----------CCCCEEEEEEEC--CCCCEEEEEECCCCCCCC
T ss_conf             9999999999987986996-----------687659999988--886417898425244654


No 9  
>d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples}
Probab=18.14  E-value=28  Score=13.10  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=18.8

Q ss_pred             EEEECCCCCEEEEEEECCCCCCC
Q ss_conf             99737876114455763457422
Q T0625            55 MVINRDGSQIGDFWAFVEGDCGE   77 (233)
Q Consensus        55 rI~d~~G~q~~d~~~~na~d~~E   77 (233)
                      |++.++-+.-+||..|+..++.|
T Consensus        59 r~~tlevGk~ADlviwd~~~~~~   81 (103)
T d2q09a1          59 KLVTLRVGMLADFLVWNCGHPAE   81 (103)
T ss_dssp             CEEECCTTSBCCEEEESSSCTTH
T ss_pred             CEEEECCCCCCCEEEECCCCHHH
T ss_conf             50786588865899976999899


No 10 
>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}
Probab=16.82  E-value=28  Score=13.01  Aligned_cols=62  Identities=16%  Similarity=0.277  Sum_probs=37.7

Q ss_pred             EEECCCCEEEEEECC-CCCE-EEEEEECCCCCCCCCCHHHHHHHCCCEECCCCCEEEEC--CCCEEEEEEECCC
Q ss_conf             997188789997378-7611-44557634574223472689874120321468654506--8984899994578
Q T0625            46 IRMAQGEALMVINRD-GSQI-GDFWAFVEGDCGEYLSMEHLRPTLRRVSPRPGDVLVSN--RRRPILTLLEDSS  115 (233)
Q Consensus        46 ~~v~~G~~lrI~d~~-G~q~-~d~~~~na~d~~Erl~~~~T~~~~~~~~l~~G~~L~S~--~~rpm~tIv~DT~  115 (233)
                      -.||.|+.|+|...- |-.- ...+.|-...|.+.      +.....++..-|..-|++  .+|  ++|..|++
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkg------lewv~~i~~~~~~~~y~~s~kgR--~tis~D~s   74 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKA------REGVAALYTHTGNTYYTDSVKGR--FTISQDKA   74 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSC------CEEEEEEETTTTEEEECGGGTTT--EEEEEEGG
T ss_pred             CEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC------EEEEEECCCCCCCCEECCCCCCC--CEEECCCC
T ss_conf             43999998598899959654266455221477535------08875126633210003312666--47843465


Done!