Query T0625 YP_612324.1, SILICIBACTER SP. TM1040, 233 residues
Match_columns 233
No_of_seqs 102 out of 379
Neff 5.4
Searched_HMMs 15564
Date Thu Jul 22 15:02:04 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0625.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0625.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ysja1 c.56.5.4 (A:4-177,A:29 56.0 6.4 0.00041 17.2 5.8 54 141-205 25-78 (261)
2 d1t71a_ d.159.1.9 (A:) Hypothe 35.2 13 0.00086 15.1 2.8 85 41-126 105-218 (281)
3 d1t70a_ d.159.1.9 (A:) Putativ 35.1 13 0.00087 15.1 4.8 93 38-132 95-213 (255)
4 d2z06a1 d.159.1.10 (A:1-252) H 31.2 16 0.001 14.7 3.9 89 36-126 90-204 (252)
5 d1k4na_ d.32.1.5 (A:) Hypothet 27.9 6.6 0.00042 17.1 -0.0 50 65-114 37-88 (190)
6 d1e0ta1 b.58.1.1 (A:70-167) Py 21.6 23 0.0015 13.6 5.7 58 43-114 11-69 (98)
7 d3bvua1 a.8.3.1 (A:412-522) Go 20.8 19 0.0012 14.1 1.2 49 118-167 59-110 (111)
8 d1xmba1 c.56.5.4 (A:37-215,A:3 18.3 27 0.0018 13.1 6.3 49 142-203 34-82 (273)
9 d2q09a1 b.92.1.10 (A:4-65,A:36 18.1 28 0.0018 13.1 1.9 23 55-77 59-81 (103)
10 d1zvya1 b.1.1.1 (A:2-125) Came 16.8 28 0.0018 13.0 1.4 62 46-115 9-74 (124)
No 1
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}
Probab=56.02 E-value=6.4 Score=17.21 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCEEEEEECCCEEEEEE
Q ss_conf 66578999999971788553465112442252178871787158889998799997245355222
Q T0625 141 DNCTDNLRMALGALGLRPTTVPCPLNLWMNTPVVEGGAMEWRPPVSRRGDHVLFRAELDVVVVIS 205 (233)
Q Consensus 141 ~nc~dNl~~al~k~Gl~~~di~~~lNlFm~v~v~~dG~l~~~~~~s~aGdyV~LrAemDllV~lS 205 (233)
....+.+...|.++|+...++. .-..|-+....+ .++|-.|-||||||-|-+.+
T Consensus 25 ~~T~~~i~~~L~~~G~~v~~~~----------~~~tgv~a~~~g-~~~gp~Ialrad~DALp~~e 78 (261)
T d1ysja1 25 VETTKKIRRWLEEEQIEILDVP----------QLKTGVIAEIKG-REDGPVIAIRADIDALPIQE 78 (261)
T ss_dssp HHHHHHHHHHHHHTTCEECCCT----------TCSSCEEEEEEC-SSCCCEEEEEEECCCBSCCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEC----------CCCEEEEEEECC-CCCCCEEEEEECCCCCCHHH
T ss_conf 9999999999998799289955----------775499999879-87674589973312011012
No 2
>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=35.24 E-value=13 Score=15.13 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=55.1
Q ss_pred CCCEEEEECCCCEEEEEECCCCCEE-----------------------EEEEECCCCCCCCCCHHHHHHHCCCEECCCCC
Q ss_conf 9843899718878999737876114-----------------------45576345742234726898741203214686
Q T0625 41 RQGRAIRMAQGEALMVINRDGSQIG-----------------------DFWAFVEGDCGEYLSMEHLRPTLRRVSPRPGD 97 (233)
Q Consensus 41 g~~~a~~v~~G~~lrI~d~~G~q~~-----------------------d~~~~na~d~~Erl~~~~T~~~~~~~~l~~G~ 97 (233)
|.||...-..|..+.|+++-|...- -++=|+|+..+|.+.+++.++-.=++.+++..
T Consensus 105 G~G~~i~~~~~~~i~Vinl~G~~fm~~~~~~~pf~~~~~~~~~~~~d~i~VDfHaEATSEK~A~g~~lDGrvsaVvGTHT 184 (281)
T d1t71a_ 105 GQGSLVFEFNKAKIRITNLLGTSVPLPFKTTNPFKVLKELILKRDCDLHIVDFHAETTSEKNAFCMAFDGYVTTIFGTHT 184 (281)
T ss_dssp SBSEEEEECSSCEEEEEEEECTTSCCSSCBCCHHHHHHHHHTTCCCSEEEEEEECSCHHHHHHHHHHHTTTSSEEEEESS
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHEEEECCCEEEEEECCC
T ss_conf 74289997165433201221642244445637887777764046787699980351066552330440796899982575
Q ss_pred EEEECCCCEEE---EEEECC--CCCC-CCCCCCCC
Q ss_conf 54506898489---999457--8870-43324788
Q T0625 98 VLVSNRRRPIL---TLLEDS--SPGV-HDTLVASC 126 (233)
Q Consensus 98 ~L~S~~~rpm~---tIv~DT--~~G~-HD~l~~~c 126 (233)
+.=+..-|+|- --+.|- | |. +|...|.-
T Consensus 185 HV~TaD~rILp~GTAyiTDvGMt-G~~ydSVIG~~ 218 (281)
T d1t71a_ 185 HVPSADLRITPKGSAYITDVGMC-GPGFGSVIGAN 218 (281)
T ss_dssp SSCCTTCEECTTSCEEESCCCEE-BCCTTSBTTBC
T ss_pred CCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCC
T ss_conf 44157640126772898357554-47667420447
No 3
>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus radiodurans [TaxId: 1299]}
Probab=35.15 E-value=13 Score=15.12 Aligned_cols=93 Identities=20% Similarity=0.167 Sum_probs=64.2
Q ss_pred ECCCCCEEEEECCCCEEEEEECCCCCE---------------------EEEEEECCCCCCCCCCHHHHHHHCCCEECCCC
Q ss_conf 428984389971887899973787611---------------------44557634574223472689874120321468
Q T0625 38 IPARQGRAIRMAQGEALMVINRDGSQI---------------------GDFWAFVEGDCGEYLSMEHLRPTLRRVSPRPG 96 (233)
Q Consensus 38 ip~g~~~a~~v~~G~~lrI~d~~G~q~---------------------~d~~~~na~d~~Erl~~~~T~~~~~~~~l~~G 96 (233)
.|+ .||...-..|..+.|+++-|+-- .-++=|+++..+|..-+++.++-.=++.+++.
T Consensus 95 ~PG-~G~~i~~~~g~ki~ViNl~Gr~fM~~~d~PF~~~d~~l~~~~~~~i~VDfHaEaTSEK~A~g~~ldGrvsav~GTH 173 (255)
T d1t70a_ 95 TPG-VGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTVFVDFHAEATSEKEAMGWHLAGRVAAVIGTH 173 (255)
T ss_dssp CSS-CSEEEEECSSSEEEEEEEECCTTSCCCSCHHHHHHHHTTCSSCCEEEEEEECSCHHHHHHHHHHHTTSSSEEEEES
T ss_pred CCC-CEEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 998-6399996066758999941411567666879999999864678859998044147778888853437679998467
Q ss_pred CEEEECCCCEEE--E-EEECC--CCCCCCCCCCCCCHHHHH
Q ss_conf 654506898489--9-99457--887043324788979987
Q T0625 97 DVLVSNRRRPIL--T-LLEDS--SPGVHDTLVASCDVHRYA 132 (233)
Q Consensus 97 ~~L~S~~~rpm~--t-Iv~DT--~~G~HD~l~~~c~~~~y~ 132 (233)
.+.-++.-|+|- | -+.|- | |.+|...|.--....+
T Consensus 174 THV~TaD~rIlp~GTay~TDvGMt-G~~~SVIG~~~~~~i~ 213 (255)
T d1t70a_ 174 THVPTADTRILKGGTAYQTDAGFT-GPHDSIIGSAIEGPLQ 213 (255)
T ss_dssp SCSCBSCCEEETTTEEEESCCCCB-EESSSBTTBCSHHHHH
T ss_pred CCCCCCCCEEECCCCEEEECCCCC-CCHHHHCCCCHHHHHH
T ss_conf 221255325714771898057552-0545612767289999
No 4
>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {Thermus thermophilus [TaxId: 274]}
Probab=31.17 E-value=16 Score=14.70 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=60.0
Q ss_pred EEECCCCCEEEEECCCCEEEEEECCCCC---------------------EEEEEEECCCCCCCCCCHHHHHHHCCCEECC
Q ss_conf 7742898438997188789997378761---------------------1445576345742234726898741203214
Q T0625 36 YTIPARQGRAIRMAQGEALMVINRDGSQ---------------------IGDFWAFVEGDCGEYLSMEHLRPTLRRVSPR 94 (233)
Q Consensus 36 ~tip~g~~~a~~v~~G~~lrI~d~~G~q---------------------~~d~~~~na~d~~Erl~~~~T~~~~~~~~l~ 94 (233)
...|+..+.-+.. .|..+.|+++-|.- ..-++=|+|+..+|..-+++.++-.=++.++
T Consensus 90 ~~~PG~G~~i~~~-~g~ki~ViNl~Gr~fm~~~d~PF~~~d~~~~~~~~~~i~VDfHaEaTSEK~A~g~~ldGrvsavvG 168 (252)
T d2z06a1 90 PGTPGKGFWRLEV-GGESLLFVQVMGRIFMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLG 168 (252)
T ss_dssp SSCSSCSEEEEEE-TTEEEEEEEEECCTTSCCCCCHHHHHHHHHHHCCCSEEEEEEECSCHHHHHHHHHHHBTTBSEEEE
T ss_pred CCCCCCCEEEECC-CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHEEEEEECCCCEEEEEE
T ss_conf 7887773799814-990688887313136787789899999998626765899984562154332124760797899971
Q ss_pred CCCEEEECCCCEEE---EEEECC--CCCCCCCCCCCC
Q ss_conf 68654506898489---999457--887043324788
Q T0625 95 PGDVLVSNRRRPIL---TLLEDS--SPGVHDTLVASC 126 (233)
Q Consensus 95 ~G~~L~S~~~rpm~---tIv~DT--~~G~HD~l~~~c 126 (233)
+..+.-+..-|+|= --+.|- | |..|...|.-
T Consensus 169 THTHV~TaD~rILp~GTayiTDvGM~-G~~~SVIG~~ 204 (252)
T d2z06a1 169 THTHVPTLDATRLPKGTLYQTDVGMT-GTYHSIIGGE 204 (252)
T ss_dssp ESSCSCBSCCEECTTSCEEESCCCCB-EESSSBTTBC
T ss_pred CCCCCCCCCCEEECCCEEEECCCCCC-CCHHHHCCCC
T ss_conf 67545565447832770898057653-3656641767
No 5
>d1k4na_ d.32.1.5 (A:) Hypothetical protein YecM (EC4020) {Escherichia coli [TaxId: 562]}
Probab=27.87 E-value=6.6 Score=17.13 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=40.3
Q ss_pred EEEEEECCCCCCCCCCHHHHHHHCCCEECCCCCEEEECC--CCEEEEEEECC
Q ss_conf 445576345742234726898741203214686545068--98489999457
Q T0625 65 GDFWAFVEGDCGEYLSMEHLRPTLRRVSPRPGDVLVSNR--RRPILTLLEDS 114 (233)
Q Consensus 65 ~d~~~~na~d~~Erl~~~~T~~~~~~~~l~~G~~L~S~~--~rpm~tIv~DT 114 (233)
.|+-.|.++...=|.|...|-+.-+..++.-|..|-.|+ |||++.+-=+.
T Consensus 37 ldl~~~~~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~~ 88 (190)
T d1k4na_ 37 LNITPLTADHISLRCHQNATAERWRRGFEQCGELLSENMINGRPICLFKLHE 88 (190)
T ss_dssp CCCTTCEEEEEEEECSCHHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCHHCCCCEEEEEECCHHHHHHHHHHHHHHCHHHHCCEECCEEEEEEECCC
T ss_conf 8702066768998508999999999999973633134742780589997588
No 6
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli [TaxId: 562]}
Probab=21.61 E-value=23 Score=13.59 Aligned_cols=58 Identities=9% Similarity=0.154 Sum_probs=36.5
Q ss_pred CEEEEECCCCEEEEEECCCC-CEEEEEEECCCCCCCCCCHHHHHHHCCCEECCCCCEEEECCCCEEEEEEECC
Q ss_conf 43899718878999737876-1144557634574223472689874120321468654506898489999457
Q T0625 43 GRAIRMAQGEALMVINRDGS-QIGDFWAFVEGDCGEYLSMEHLRPTLRRVSPRPGDVLVSNRRRPILTLLEDS 114 (233)
Q Consensus 43 ~~a~~v~~G~~lrI~d~~G~-q~~d~~~~na~d~~Erl~~~~T~~~~~~~~l~~G~~L~S~~~rpm~tIv~DT 114 (233)
+..+.+++||.++|+.-+.. .....+.. +.+.- .-.+.+|+.++=|.|...+.|++-+
T Consensus 11 ~~~i~L~~G~~v~i~~~~~~~~~~~~i~v---------~~~~l-----~~~v~~Gd~IlidDG~i~l~V~~v~ 69 (98)
T d1e0ta1 11 GNDVSLKAGQTFTFTTDKSVIGNSEMVAV---------TYEGF-----TTDLSVGNTVLVDDGLIGMEVTAIE 69 (98)
T ss_dssp GCCEEECTTCEEEEESCTTCCBBTTEEEB---------SCTTH-----HHHCCTTCEEEETTTTEEEEEEEEE
T ss_pred CCEEEECCCCEEEEEECCCCCCCCCEEEE---------CHHHH-----HHHHCCCCEEEECCCCEEEEEEECC
T ss_conf 98689728999999828865897799994---------38996-----6651688499976772268996336
No 7
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=20.76 E-value=19 Score=14.11 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=30.4
Q ss_pred CCCCCCCCCCHHHHHHH---CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 04332478897998764---167788665789999999717885534651124
Q T0625 118 VHDTLVASCDVHRYAQL---GHEGYHDNCTDNLRMALGALGLRPTTVPCPLNL 167 (233)
Q Consensus 118 ~HD~l~~~c~~~~y~~~---~~~~~h~nc~dNl~~al~k~Gl~~~di~~~lNl 167 (233)
.||.|.|.+..+-|... ..++ ...|..-+..++..+-..+....+.+||
T Consensus 59 ~HD~I~GTs~~~V~~Dy~~rl~~~-~~~~~~li~~al~~Ll~~~~~~~~d~~f 110 (111)
T d3bvua1 59 HHDGITGTAKTHVVVDYEQRMQEA-LKACQMVMQQSVYRLLTKPSIYSPDFSF 110 (111)
T ss_dssp BTTTTTSCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTBCTTTCCCCTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 123446667089999999999999-9999999999999998289878889888
No 8
>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=18.34 E-value=27 Score=13.13 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCEEEEEECCCEEEE
Q ss_conf 65789999999717885534651124422521788717871588899987999972453552
Q T0625 142 NCTDNLRMALGALGLRPTTVPCPLNLWMNTPVVEGGAMEWRPPVSRRGDHVLFRAELDVVVV 203 (233)
Q Consensus 142 nc~dNl~~al~k~Gl~~~di~~~lNlFm~v~v~~dG~l~~~~~~s~aGdyV~LrAemDllV~ 203 (233)
-..+.+...|.++|+.... ++...|-+.... .+.|..|-|||+||-|-+
T Consensus 34 ~T~~~i~~~L~~~g~~~~~-----------~~~~tg~~a~~~--~~~~~~i~~rad~Dalp~ 82 (273)
T d1xmba1 34 ETSKLIRSELELIGIKYRY-----------PVAITGVIGYIG--TGEPPFVALRADMDALPI 82 (273)
T ss_dssp HHHHHHHHHHHHHTCCEEE-----------EETTTEEEEEEE--SSSSCEEEEEEECCCBSC
T ss_pred HHHHHHHHHHHHCCCEEEE-----------CCCCEEEEEEEC--CCCCEEEEEECCCCCCCC
T ss_conf 9999999999987986996-----------687659999988--886417898425244654
No 9
>d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples}
Probab=18.14 E-value=28 Score=13.10 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=18.8
Q ss_pred EEEECCCCCEEEEEEECCCCCCC
Q ss_conf 99737876114455763457422
Q T0625 55 MVINRDGSQIGDFWAFVEGDCGE 77 (233)
Q Consensus 55 rI~d~~G~q~~d~~~~na~d~~E 77 (233)
|++.++-+.-+||..|+..++.|
T Consensus 59 r~~tlevGk~ADlviwd~~~~~~ 81 (103)
T d2q09a1 59 KLVTLRVGMLADFLVWNCGHPAE 81 (103)
T ss_dssp CEEECCTTSBCCEEEESSSCTTH
T ss_pred CEEEECCCCCCCEEEECCCCHHH
T ss_conf 50786588865899976999899
No 10
>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}
Probab=16.82 E-value=28 Score=13.01 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=37.7
Q ss_pred EEECCCCEEEEEECC-CCCE-EEEEEECCCCCCCCCCHHHHHHHCCCEECCCCCEEEEC--CCCEEEEEEECCC
Q ss_conf 997188789997378-7611-44557634574223472689874120321468654506--8984899994578
Q T0625 46 IRMAQGEALMVINRD-GSQI-GDFWAFVEGDCGEYLSMEHLRPTLRRVSPRPGDVLVSN--RRRPILTLLEDSS 115 (233)
Q Consensus 46 ~~v~~G~~lrI~d~~-G~q~-~d~~~~na~d~~Erl~~~~T~~~~~~~~l~~G~~L~S~--~~rpm~tIv~DT~ 115 (233)
-.||.|+.|+|...- |-.- ...+.|-...|.+. +.....++..-|..-|++ .+| ++|..|++
T Consensus 9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkg------lewv~~i~~~~~~~~y~~s~kgR--~tis~D~s 74 (124)
T d1zvya1 9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKA------REGVAALYTHTGNTYYTDSVKGR--FTISQDKA 74 (124)
T ss_dssp EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSC------CEEEEEEETTTTEEEECGGGTTT--EEEEEEGG
T ss_pred CEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC------EEEEEECCCCCCCCEECCCCCCC--CEEECCCC
T ss_conf 43999998598899959654266455221477535------08875126633210003312666--47843465
Done!