Query T0626 NP_794070.1, Pseudomonas syringae pv. tomato str. DC3000, 283 residues
Match_columns 283
No_of_seqs 212 out of 1647
Neff 5.5
Searched_HMMs 11830
Date Thu Jul 22 15:07:36 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0626.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0626.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00551 Formyl_trans_N: Formy 100.0 2.2E-43 0 312.0 17.3 178 87-264 1-181 (181)
2 PF01842 ACT: ACT domain; Int 98.2 1.6E-06 1.4E-10 61.7 7.0 64 4-70 1-64 (66)
3 PF01902 ATP_bind_4: ATP-bindi 92.4 0.088 7.4E-06 29.5 4.9 122 87-218 1-141 (218)
4 PF01171 ATP_bind_3: PP-loop f 90.7 0.33 2.8E-05 25.6 6.4 93 88-181 1-115 (182)
5 PF04273 DUF442: Putative phos 77.0 2 0.00017 20.3 5.4 66 91-162 9-86 (110)
6 PF05582 Peptidase_U57: YabG p 72.1 2.4 0.00021 19.7 4.6 187 46-248 38-255 (287)
7 PF01993 MTD: methylene-5,6,7, 71.3 2.6 0.00022 19.5 4.6 92 71-168 13-114 (276)
8 PF03054 tRNA_Me_trans: tRNA m 68.3 3.2 0.00027 18.9 5.4 21 184-204 216-237 (356)
9 PF04309 G3P_antiterm: Glycero 56.5 3.7 0.00032 18.5 3.1 128 58-213 31-164 (175)
10 PF04007 DUF354: Protein of un 55.6 5.3 0.00045 17.4 7.5 17 125-141 39-55 (335)
11 PF02593 DUF166: Uncharacteriz 55.2 5.4 0.00045 17.4 6.0 111 112-251 50-164 (217)
12 PF10406 TAF8_C: Transcription 54.8 1.4 0.00012 21.4 0.6 24 192-215 4-27 (51)
13 PF09419 DUF2010: Protein of u 52.1 6 0.00051 17.1 6.0 76 100-180 64-152 (168)
14 PF03746 LamB_YcsF: LamB/YcsF 50.9 2.5 0.00021 19.7 1.4 120 126-249 93-230 (242)
15 PF04800 ETC_C1_NDUFA4: ETC co 49.9 6.5 0.00055 16.8 3.8 34 109-142 43-77 (101)
16 PF11039 DUF2824: Protein of u 45.0 5.6 0.00048 17.3 2.5 62 166-235 47-114 (151)
17 PF02601 Exonuc_VII_L: Exonucl 44.1 7.9 0.00067 16.3 6.6 26 83-108 11-36 (319)
18 PF00994 MoCF_biosynth: Probab 41.9 8.2 0.0007 16.1 2.9 65 121-187 17-85 (144)
19 PF01408 GFO_IDH_MocA: Oxidore 41.4 8.7 0.00073 16.0 8.0 70 88-172 2-72 (120)
20 PF02441 Flavoprotein: Flavopr 39.6 9.2 0.00078 15.8 4.2 73 87-169 1-85 (122)
21 PF01297 SBP_bac_9: Periplasmi 36.8 10 0.00086 15.5 6.7 161 6-171 78-253 (303)
22 PF12471 GTP_CH_N: GTP cyclohy 36.7 8.6 0.00072 16.0 2.4 46 91-136 125-183 (194)
23 PF02719 Polysacc_synt_2: Poly 35.2 11 0.00091 15.3 3.3 32 187-224 173-208 (295)
24 PF05221 AdoHcyase: S-adenosyl 34.0 11 0.00095 15.2 4.8 78 112-202 66-151 (268)
25 PF01008 IF-2B: Initiation fac 32.1 12 0.001 15.0 6.0 72 86-169 105-182 (281)
26 PF00205 TPP_enzyme_M: Thiamin 29.8 9.5 0.0008 15.7 1.7 69 124-194 29-113 (137)
27 PF01094 ANF_receptor: Recepto 29.6 13 0.0011 14.7 8.6 76 6-98 53-133 (348)
28 PF00682 HMGL-like: HMGL-like 28.0 14 0.0012 14.6 8.8 171 17-220 16-215 (237)
29 PF02110 HK: Hydroxyethylthiaz 27.8 14 0.0012 14.5 4.9 40 127-167 72-112 (246)
30 PF00266 Aminotran_5: Aminotra 26.6 15 0.0013 14.4 6.3 100 61-170 43-147 (371)
31 PF07745 Glyco_hydro_53: Glyco 26.1 15 0.0013 14.3 3.5 32 11-42 20-51 (332)
32 PF02273 Acyl_transf_2: Acyl t 26.0 11 0.00095 15.2 1.5 155 17-178 46-241 (294)
33 PF06925 MGDG_synth: Monogalac 25.6 15 0.0013 14.3 3.0 22 150-171 77-98 (169)
34 PF00733 Asn_synthase: Asparag 25.6 15 0.0013 14.3 4.3 56 85-143 16-80 (269)
35 PF03808 Glyco_tran_WecB: Glyc 24.4 16 0.0014 14.1 8.9 67 100-169 37-108 (172)
36 PF00867 XPG_I: XPG I-region; 24.4 16 0.0014 14.1 3.2 34 131-170 1-34 (92)
37 PF02844 GARS_N: Phosphoribosy 24.2 16 0.0014 14.1 2.8 66 91-168 3-68 (100)
38 PF06574 FAD_syn: FAD syntheta 22.9 17 0.0015 13.9 6.2 105 127-232 29-153 (157)
39 PF02142 MGS: MGS-like domain 21.4 13 0.0011 14.7 1.1 15 153-167 51-65 (95)
40 PF04110 APG12: Ubiquitin-like 20.7 19 0.0016 13.6 3.4 52 217-278 2-53 (87)
41 PF09839 DUF2066: Uncharacteri 20.5 9.5 0.0008 15.7 0.2 104 43-174 71-187 (234)
42 PF01470 Peptidase_C15: Pyrogl 20.2 20 0.0017 13.6 2.2 19 152-170 50-68 (202)
No 1
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 1s3i_A 2cfi_A 2bw0_A 2bln_B 1z7e_E 1yrw_A 1fmt_A 2fmt_B 1zgh_A 3dcj_A ....
Probab=100.00 E-value=2.2e-43 Score=312.00 Aligned_cols=178 Identities=29% Similarity=0.454 Sum_probs=169.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHH--HHHHHCCCCEEECCCC-CCCHHHHHHHHHHHHHHCCC
Q ss_conf 52899980688757999999966899944899980887899--9999648989972888-88879999999999995289
Q T0626 87 KRVVLMASRESHCLADLLHRWHSDELDCDIACVISNHQDLR--SMVEWHDIPYYHVPVD-PKDKEPAFAEVSRLVGHHQA 163 (283)
Q Consensus 87 ~riav~vS~~g~~l~all~~~~~g~l~~ei~~visn~~~~~--~~A~~~gIp~~~~~~~-~~~~~~~e~~l~~~l~~~~~ 163 (283)
|||++|+||+|+|++++|++++.+.++++|++|+||++++. ..|.+.++|...+... ...+..++.++.+.++++++
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vvt~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (181)
T PF00551_consen 1 MRIAFFGSGSGSNLQALLEALKAGGLEAEIVLVVTNPDKARGRKRAIRNGIPAQVIQEKNFQPRSLNDPELLEWLKELNP 80 (181)
T ss_dssp -EEEEEE----HHHHHHHHHHHHTTSEEEEEEEEESSTTEHHHHHHHHHCHCEEECCGGGSSSHHHHHHHHHHHHHHTT-
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 97999976997799999999985899977999997885422202466379998996514799846611889999997699
Q ss_pred CEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf 89997132000797999841798798420217876664279999983890844589987078887976400167548898
Q T0626 164 DVVVLARYMQILPPQLCREYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPIIEQDVVRVSHRD 243 (283)
Q Consensus 164 DlivLAgymriL~~~~~~~~~~riiNiHpSLLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V~~~d 243 (283)
|++|++|||+|||+++++.|+.++||+||||||+|+|.+|++||+.+|++.+|+|+|+|++++|+||||+|+.++|.++|
T Consensus 81 Dliv~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~~~~G~Tih~~~~~~D~G~Ii~q~~~~i~~~d 160 (181)
T PF00551_consen 81 DLIVVAGFGRILPPEFLSAFPGGIINIHPSLLPKYRGAAPIQWAILNGEKETGVTIHYVDEGLDSGPIIAQKEVPIDPDD 160 (181)
T ss_dssp SEEEESS-SS---HHHHCCSTT-EEEEESSSTTTTB-E-HHHHHHH----EEEEEEEE--SSTT--EEEEEEEEE--TT-
T ss_pred CEEEHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCC
T ss_conf 86895445888707987417777799087728367797399999985999704399997277778984899998649999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989999999998899999999
Q T0626 244 SIENMVRFGRDVEKMVLARGL 264 (283)
Q Consensus 244 t~e~L~~~~~~~E~~~l~~av 264 (283)
|.++|.+|+.+.|+++|++||
T Consensus 161 t~~~l~~r~~~~~~~ll~~av 181 (181)
T PF00551_consen 161 TAESLYDRVAEAEAELLPEAV 181 (181)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999769
No 2
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure . ; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3dc2_A 3ddn_B 1ygy_A 2f1f_A 2pc6_A 2fgc_A 1y7p_B 1zpv_B 2f06_A 2phm_A ....
Probab=98.21 E-value=1.6e-06 Score=61.65 Aligned_cols=64 Identities=27% Similarity=0.400 Sum_probs=46.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999984999746889889999759848660111052417678999996078788989999999999
Q T0626 4 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPI 70 (283)
Q Consensus 4 ~ILtv~gpD~~GIVA~Vs~~La~~g~NI~disQ~vd~~~g~FfMri~~d~~~~~~~~~~l~~~l~~l 70 (283)
|.+++.|||+||+++++++.|+++|+||.++.+..+.....+++....... ...+++.+++.++
T Consensus 1 ~~i~v~~~DrpG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRISVDVPDRPGILADITSALADHGINIDSIEQSSDGDRSEIMFVVHVVDE---EDLEEIIEALEKL 64 (66)
T ss_dssp EEEEEEEESSTHHHHHHHHHHHHTT-EEEEEEEEEESSCEEEEEEEEEEEG---GHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECCC---CCHHHHHHHHHCC
T ss_conf 999999079898999999999987985789999873888479999997582---1299999999731
No 3
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins. ; PDB: 1ru8_A 3h7e_A 2d13_A.
Probab=92.39 E-value=0.088 Score=29.53 Aligned_cols=122 Identities=16% Similarity=0.265 Sum_probs=70.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCH---H-----------HHHHHHHCCCCEEECCCCCCCHHHHHH
Q ss_conf 52899980688757999999966899944899980887---8-----------999999648989972888888799999
Q T0626 87 KRVVLMASRESHCLADLLHRWHSDELDCDIACVISNHQ---D-----------LRSMVEWHDIPYYHVPVDPKDKEPAFA 152 (283)
Q Consensus 87 ~riav~vS~~g~~l~all~~~~~g~l~~ei~~visn~~---~-----------~~~~A~~~gIp~~~~~~~~~~~~~~e~ 152 (283)
||++++.||.--+..||..+.+. -+|.++++-.+ + ....|+.-|||.+.++.+ .+.+++.+
T Consensus 1 MK~v~l~SGGKDS~~Al~~a~~~----~~V~~L~t~~~~~~~s~~~H~~~~~l~~~qA~algiPl~~~~~~-g~~e~~~~ 75 (218)
T PF01902_consen 1 MKVVALWSGGKDSTLALYRALRQ----HEVVCLLTMVPENGDSYMFHGVNLELLELQAEALGIPLIEIEIS-GSEEDEVE 75 (218)
T ss_dssp -EEEEE-----HHHHHHHHHHHT-----EEEEEE---BSSSSTTTS-STSSTCHHHHHHH----EEE--B----TTCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC----CCCCEEEEEECCCCCEECCCCCCHHHHHHHHHHCCCCEEEEECC-CCCHHHHH
T ss_conf 96999966868999999999872----97459999965998613153558899999999769978999857-86205679
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCC--CEEEECCCCCCCCCCCCHH---HHHHHCCCCEEEEE
Q ss_conf 999999952898999713200079799984179--8798420217876664279---99998389084458
Q T0626 153 EVSRLVGHHQADVVVLARYMQILPPQLCREYAH--QVINIHHSFLPSFVGAKPY---HQASLRGVKLIGAT 218 (283)
Q Consensus 153 ~l~~~l~~~~~DlivLAgymriL~~~~~~~~~~--riiNiHpSLLP~f~G~~~~---~~a~~~Gvk~~G~T 218 (283)
++.+.|++.++|-+| |.-|.+..--...++ +-.++- ++.|-. |.++. ++-++.|.+..=++
T Consensus 76 ~l~~~l~~~~v~~vv---~GdI~~~~~r~~~e~vc~~lGl~-~~~PLW-~~d~~~ll~e~i~~Gf~aiIv~ 141 (218)
T PF01902_consen 76 DLKEALKELKVEAVV---FGDIFSEYQRNRIERVCERLGLE-SLFPLW-GRDQEELLREMIDSGFEAIIVK 141 (218)
T ss_dssp HHHHHH--------B-------S-CCHHHHHHHHHHH------B-TTT-T--HHHHHHHHHH---EEEEEE
T ss_pred HHHHHHHHHCCCEEE---ECCCCCHHHHHHHHHHHHHCCCE-EEECCC-CCCHHHHHHHHHHCCCEEEEEE
T ss_conf 999999972988999---99787788999999999973999-980255-8999999999998799599999
No 4
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This group of proteins belongs to the PP-loop superfamily . ; PDB: 2e89_B 2e21_C 1wy5_A 1ni5_A.
Probab=90.71 E-value=0.33 Score=25.64 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=57.6
Q ss_pred CEEEEECCCC-C-CHHHHHHHHHCCCCCCEEEEEEECCH---H-------HHHHHHHCCCCEEECCCCC----CCHHH--
Q ss_conf 2899980688-7-57999999966899944899980887---8-------9999996489899728888----88799--
Q T0626 88 RVVLMASRES-H-CLADLLHRWHSDELDCDIACVISNHQ---D-------LRSMVEWHDIPYYHVPVDP----KDKEP-- 149 (283)
Q Consensus 88 riav~vS~~g-~-~l~all~~~~~g~l~~ei~~visn~~---~-------~~~~A~~~gIp~~~~~~~~----~~~~~-- 149 (283)
|++|-+||.- | +|-.++. .-....+.++.++--||. + +..+++++|||+++...+. ....+
T Consensus 1 kilvavSGGkDS~~Ll~ll~-~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~gi~~~~~~~~~~~~~~~~~e~~ 79 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLK-DLNRRLGIKLIVVHVDHGIRSESDEEAEFVEEYCEKLGIPLIIKRLDESKQKGSNFEAC 79 (182)
T ss_dssp EEEEE-----HHHHHHHHHH-HHCTTTT-EEEEEEE--SSSTCHHHHHHHHHHHHHHTT-EEEEE---HHHHTT--TTTH
T ss_pred CEEEEECCCHHHHHHHHHHH-HHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEHHCCCCCHHHH
T ss_conf 99999767799999999999-99986799789999847888644489999999999819976999987610257898999
Q ss_pred ----HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
Q ss_conf ----99999999995289899971320007979998
Q T0626 150 ----AFAEVSRLVGHHQADVVVLARYMQILPPQLCR 181 (283)
Q Consensus 150 ----~e~~l~~~l~~~~~DlivLAgymriL~~~~~~ 181 (283)
--+.+.+...+++.+.|+++--+-=.-+.|+-
T Consensus 80 aR~~R~~~l~~~a~~~~~~~l~~gHh~dD~~Et~l~ 115 (182)
T PF01171_consen 80 ARKLRYQFLNEIARENGADKLATGHHLDDQAETFLM 115 (182)
T ss_dssp HHHHHHHHHHHCHHH----EEE---BHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHH
T ss_conf 999999999987654000013223675168999999
No 5
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 This is a family of largely hypothetical proteins of unknown function. ; PDB: 3gxh_A.
Probab=77.03 E-value=2 Score=20.29 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=40.1
Q ss_pred EEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCHHH-----------HHHHHHCCCCEEECCCCCCCH-HHHHHHHHHHH
Q ss_conf 998068875799999996689994489998088789-----------999996489899728888887-99999999999
Q T0626 91 LMASRESHCLADLLHRWHSDELDCDIACVISNHQDL-----------RSMVEWHDIPYYHVPVDPKDK-EPAFAEVSRLV 158 (283)
Q Consensus 91 v~vS~~g~~l~all~~~~~g~l~~ei~~visn~~~~-----------~~~A~~~gIp~~~~~~~~~~~-~~~e~~l~~~l 158 (283)
+.+|+.-+- .++-.....| +.-||.||||- ...|++.|+.|+++|+....- .+.=.+..+.+
T Consensus 9 ~~va~Q~~~-~di~~la~~G-----fktVIn~Rpd~E~~~qp~~~~~~~~a~~~GL~y~~iPv~~~~~~~~~v~~f~~~l 82 (110)
T PF04273_consen 9 LSVAGQPSP-EDIAQLAAQG-----FKTVINNRPDGEDPGQPSSAEEREAAEAAGLEYVHIPVDSGQITPEDVEAFAAAL 82 (110)
T ss_dssp EEEE----H-HHHHHHHH---------EEEE-S-TTSTTS-T---T---HHHH---EEEE----TTS--HHHHHHHHHHH
T ss_pred EEECCCCCH-HHHHHHHHCC-----CCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 788589899-9999999789-----7399989989888899741999999998699289951378889999999999999
Q ss_pred HHCC
Q ss_conf 9528
Q T0626 159 GHHQ 162 (283)
Q Consensus 159 ~~~~ 162 (283)
++..
T Consensus 83 ~~~~ 86 (110)
T PF04273_consen 83 EELP 86 (110)
T ss_dssp HHT-
T ss_pred HHCC
T ss_conf 8489
No 6
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis .
Probab=72.13 E-value=2.4 Score=19.73 Aligned_cols=187 Identities=12% Similarity=0.060 Sum_probs=94.6
Q ss_pred EEEEEEEECCCC---CCHHHHHHHHHHHHHHHCCHHHHHCCCCC----CCEEEEECCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 899999607878---89899999999998872301220002575----52899980688757999999966899944899
Q T0626 46 FMRHEIRADTLP---FDLDGFREAFTPIAEEFSMDWRITDSAQK----KRVVLMASRESHCLADLLHRWHSDELDCDIAC 118 (283)
Q Consensus 46 fMri~~d~~~~~---~~~~~l~~~l~~la~~~~m~~~i~~~~~~----~riav~vS~~g~~l~all~~~~~g~l~~ei~~ 118 (283)
.||+..|.+... .+..+..+.....-+..+-.++..-..+. ++.-=..++...+ ...=+.|..|.-
T Consensus 38 d~RLiADAp~dDL~~vd~~e~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-------~~~f~~PGkVLH 110 (287)
T PF05582_consen 38 DMRLIADAPLDDLEKVDAREVRRYKKRFKERVNESIKRIRQDRKLMKEKREYRATKGYQEN-------ELYFQRPGKVLH 110 (287)
T ss_pred CEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCEEEE
T ss_conf 3789962877864518988999999999999999999999998877655443102344554-------200389861787
Q ss_pred EEECCHH---HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--------------HHHHH
Q ss_conf 9808878---999999648989972888888799999999999952898999713200079--------------79998
Q T0626 119 VISNHQD---LRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYMQILP--------------PQLCR 181 (283)
Q Consensus 119 visn~~~---~~~~A~~~gIp~~~~~~~~~~~~~~e~~l~~~l~~~~~DlivLAgymriL~--------------~~~~~ 181 (283)
+=++..- |-.+=++.|||.+=+-... .++-..+.++|++++||.+|+-|---++. ..|++
T Consensus 111 iDGD~~YL~~Cl~~Ykql~i~a~G~~~~E---~~qp~~i~~ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFve 187 (287)
T PF05582_consen 111 IDGDEEYLKKCLKVYKQLGIPAVGVHIPE---KEQPEKIVDLLEEYRPDILVITGHDAYLKNKGDFSDLNNYRNSKYFVE 187 (287)
T ss_pred ECCCHHHHHHHHHHHHHHCCCEEEEEECC---CCCCHHHHHHHHHHCCCEEEEECCHHHHCCCCCHHHHHHHHCCHHHHH
T ss_conf 55989999999999998098548998253---126199999998619998999684365127787336666541088999
Q ss_pred HCCC-CEEEECCCCCCCCCCCC--HHHHHHHCCCCEE----EEEEEEEECCCCCCCEEEEEEEECCCCCCHHHH
Q ss_conf 4179-87984202178766642--7999998389084----458998707888797640016754889898999
Q T0626 182 EYAH-QVINIHHSFLPSFVGAK--PYHQASLRGVKLI----GATCHYVTEELDAGPIIEQDVVRVSHRDSIENM 248 (283)
Q Consensus 182 ~~~~-riiNiHpSLLP~f~G~~--~~~~a~~~Gvk~~----G~TvH~V~~~lD~GpII~Q~~v~V~~~dt~e~L 248 (283)
..+. |-.+=+.-=|==|.|+- -|+.-+++|.-+. -+-+|-.+ |+..-..+.-++-+..=.+
T Consensus 188 aV~~aR~~~~~~D~LVIFAGACQS~fEail~AGANFASSP~RvlIHalD------PV~i~eKia~T~i~~~V~i 255 (287)
T PF05582_consen 188 AVKEARKYEPNLDDLVIFAGACQSHFEAILDAGANFASSPSRVLIHALD------PVFIVEKIAYTSIMEVVSI 255 (287)
T ss_pred HHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCEEEECCC------CEEEEEEEEECCCCCEECH
T ss_conf 9999982389954289982054788999997176644795215676058------5157876530453550339
No 7
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 .; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis; PDB: 1u6i_J 1u6j_F 1qv9_A 1u6k_C.
Probab=71.25 E-value=2.6 Score=19.49 Aligned_cols=92 Identities=15% Similarity=0.228 Sum_probs=54.0
Q ss_pred HHHHCCHHHHHCCCCCCCEEEEECCCCCCHHHH-HHHHHC---CCCCCEEEEEEECCHHH------HHHHHHCCCCEEEC
Q ss_conf 887230122000257552899980688757999-999966---89994489998088789------99999648989972
Q T0626 71 AEEFSMDWRITDSAQKKRVVLMASRESHCLADL-LHRWHS---DELDCDIACVISNHQDL------RSMVEWHDIPYYHV 140 (283)
Q Consensus 71 a~~~~m~~~i~~~~~~~riav~vS~~g~~l~al-l~~~~~---g~l~~ei~~visn~~~~------~~~A~~~gIp~~~~ 140 (283)
|...=++.-+++...|..|-+.+-|+|.-++-= +++... .+++.+.+++||-++.+ ++.-.+.|||++++
T Consensus 13 g~s~~~dLlLDErAdRedi~vrv~gsGaKM~pe~ve~v~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~ivI 92 (276)
T PF01993_consen 13 GMSVVIDLLLDERADREDIDVRVVGSGAKMQPEQVERVVTKMLKDWDPDFVIVISPNPAAPGPKKAREMLSAKGIPCIVI 92 (276)
T ss_dssp --TTTTTGGGSTTS--SSEEEEEE-ETT--SHHHHHHHHHHHHHHH--SEEEE----TT----HHHHHHHHTSSS-EEE-
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 14899999876540346863898426666787889998899998508998999789888999577899987669987997
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8888887999999999999528989997
Q T0626 141 PVDPKDKEPAFAEVSRLVGHHQADVVVL 168 (283)
Q Consensus 141 ~~~~~~~~~~e~~l~~~l~~~~~DlivL 168 (283)
.-....|. .+.+++.+-.||++
T Consensus 93 ~D~p~~k~------~d~~~~~gfGYIi~ 114 (276)
T PF01993_consen 93 SDAPTKKA------KDAMKEQGFGYIIV 114 (276)
T ss_dssp ------TT------HHHHHH-----EEE
T ss_pred CCCCCHHH------HHHHHHCCCCEEEE
T ss_conf 58864215------88998658857997
No 8
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (2.1.1.61 from EC) catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; GO: 0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2der_A 2deu_A 2det_A 2hma_A.
Probab=68.32 E-value=3.2 Score=18.95 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=9.1
Q ss_pred CCCEEEEC-CCCCCCCCCCCHH
Q ss_conf 79879842-0217876664279
Q T0626 184 AHQVINIH-HSFLPSFVGAKPY 204 (283)
Q Consensus 184 ~~riiNiH-pSLLP~f~G~~~~ 204 (283)
+|.|+++. --.|....|..-|
T Consensus 216 ~G~ivd~~tG~vlG~H~G~~~y 237 (356)
T PF03054_consen 216 PGPIVDIDTGNVLGEHKGLHFY 237 (356)
T ss_dssp ---EEE-----B-------TT-
T ss_pred CCCEEECCCCCEEEECCCEEEE
T ss_conf 9770200238680361682787
No 9
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus subtilis, glycerol-3-P activates the antiterminator GlpP . In Bacillus subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0030528 transcription regulator activity, 0009607 response to biotic stimulus, 0045449 regulation of transcription; PDB: 1vkf_A.
Probab=56.53 E-value=3.7 Score=18.46 Aligned_cols=128 Identities=14% Similarity=0.097 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCE
Q ss_conf 89899999999998872301220002575528999806887579999999668999448999808878999999648989
Q T0626 58 FDLDGFREAFTPIAEEFSMDWRITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACVISNHQDLRSMVEWHDIPY 137 (283)
Q Consensus 58 ~~~~~l~~~l~~la~~~~m~~~i~~~~~~~riav~vS~~g~~l~all~~~~~g~l~~ei~~visn~~~~~~~A~~~gIp~ 137 (283)
.++.++-+.+.+-++..-+ +-+ |+.|-++.=.++-.=.+.+ +..++||.|+..-..|++.|+.+
T Consensus 31 ~~l~~~v~~~k~~gK~v~v-----HiD-------Li~GL~~d~~a~~fl~~~~----~~dGIISTk~~~i~~Ak~~Gl~t 94 (175)
T PF04309_consen 31 GNLKSIVEKIKKAGKKVFV-----HID-------LIEGLSSDEIAVEFLKKYT----KPDGIISTKSNLIKRAKKLGLLT 94 (175)
T ss_dssp TTHHHHHHHHHH---EEEE-----BGG-------GEE------HHHHHHHH-----------EES-HHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCEEEE-----EEE-------ECCCCCCCHHHHHHHHHHC----CCCEEEECCHHHHHHHHHCCCEE
T ss_conf 8899999999986998999-----842-------0467788879999999863----76616754789999999789907
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEE-EEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCC-----HHHHHHHCC
Q ss_conf 97288888879999999999995289899-971320007979998417987984202178766642-----799999838
Q T0626 138 YHVPVDPKDKEPAFAEVSRLVGHHQADVV-VLARYMQILPPQLCREYAHQVINIHHSFLPSFVGAK-----PYHQASLRG 211 (283)
Q Consensus 138 ~~~~~~~~~~~~~e~~l~~~l~~~~~Dli-vLAgymriL~~~~~~~~~~riiNiHpSLLP~f~G~~-----~~~~a~~~G 211 (283)
.. ..---+....+ ...+.++..+||+| +|-|.| |.+++....+. + .|=+.|.= -...|+.+|
T Consensus 95 Iq-R~FliDS~sl~-~~~~~i~~~~PD~vEiLPG~~----p~iI~~i~~~~-~-----~PiIAGGLI~~~edv~~al~aG 162 (175)
T PF04309_consen 95 IQ-RVFLIDSLSLE-NGIKQIEKSKPDAVEILPGIM----PKIIKEIKKET-G-----IPIIAGGLIRTKEDVIEALKAG 162 (175)
T ss_dssp EE-EEE--SHHHHH----HHHHH----EEEEE---H----HHHHCT----E---------EEE-----SHHHHHHHCTTS
T ss_pred EE-EEEEEEHHHHH-HHHHHHHHCCCCEEEECCHHH----HHHHHHHHHHH-H-----HHHHHCCCCCCHHHHHHHHHCC
T ss_conf 96-54113177899-999998546999999887678----99999999998-8-----8831211106799999999747
Q ss_pred CC
Q ss_conf 90
Q T0626 212 VK 213 (283)
Q Consensus 212 vk 213 (283)
..
T Consensus 163 A~ 164 (175)
T PF04309_consen 163 AI 164 (175)
T ss_dssp SE
T ss_pred CC
T ss_conf 53
No 10
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=55.63 E-value=5.3 Score=17.45 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=7.1
Q ss_pred HHHHHHHHCCCCEEECC
Q ss_conf 89999996489899728
Q T0626 125 DLRSMVEWHDIPYYHVP 141 (283)
Q Consensus 125 ~~~~~A~~~gIp~~~~~ 141 (283)
.+.++++.+|+|+.++.
T Consensus 39 ~~~~LL~~ygi~y~~vG 55 (335)
T PF04007_consen 39 ETIELLDMYGIEYIVVG 55 (335)
T ss_pred CHHHHHHHCCCCEEEEE
T ss_conf 38999998299759980
No 11
>PF02593 DUF166: Uncharacterized ArCR, COG1810; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=55.20 E-value=5.4 Score=17.40 Aligned_cols=111 Identities=18% Similarity=0.250 Sum_probs=66.8
Q ss_pred CCCEEEEEEECCHHHH-HH---HHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCE
Q ss_conf 9944899980887899-99---9964898997288888879999999999995289899971320007979998417987
Q T0626 112 LDCDIACVISNHQDLR-SM---VEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYMQILPPQLCREYAHQV 187 (283)
Q Consensus 112 l~~ei~~visn~~~~~-~~---A~~~gIp~~~~~~~~~~~~~~e~~l~~~l~~~~~DlivLAgymriL~~~~~~~~~~ri 187 (283)
-.+|+.+.++=|||+- .+ +.+.|+++..+|..... ...-.++.+.++++++++++ |..||.
T Consensus 50 ~~~Dl~i~y~lHPDl~~~L~~~~~e~g~~avIvp~~~~~-~g~~~~lk~~~e~~g~~~~~--------P~~~Cs------ 114 (217)
T PF02593_consen 50 PEADLIIAYGLHPDLTYELPEIAAETGIKAVIVPSESPK-PGLRKQLKEQLEEFGVEVEF--------PEPFCS------ 114 (217)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCC-CCHHHHHHHHHHHCCCCEEC--------CCCCCC------
T ss_conf 887689983359506899999998649988997068875-31678999999863872655--------863335------
Q ss_pred EEECCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHH
Q ss_conf 9842021787666427999998389084458998707888797640016754889898999999
Q T0626 188 INIHHSFLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPIIEQDVVRVSHRDSIENMVRF 251 (283)
Q Consensus 188 iNiHpSLLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~~v~V~~~dt~e~L~~~ 251 (283)
|.| ..+|+-+++..- .|.-.-.| +++.|.|..=++++=.|.-+..-.+++
T Consensus 115 ------L~~---~~~~~i~~F~~~---FG~P~lei--~v~~~~i~~V~V~R~APCGsT~~vAk~ 164 (217)
T PF02593_consen 115 ------LEP---TGNPYIDEFAEY---FGRPELEI--EVEDGKIKDVKVLRGAPCGSTWYVAKR 164 (217)
T ss_pred ------CCC---CCCHHHHHHHHH---HCCCEEEE--EECCCCEEEEEEEECCCCCCHHHHHHH
T ss_conf ------677---787669999998---39962899--826993777888616888508999998
No 12
>PF10406 TAF8_C: Transcription factor TFIID complex subunit 8 C-term
Probab=54.84 E-value=1.4 Score=21.44 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCEE
Q ss_conf 021787666427999998389084
Q T0626 192 HSFLPSFVGAKPYHQASLRGVKLI 215 (283)
Q Consensus 192 pSLLP~f~G~~~~~~a~~~Gvk~~ 215 (283)
|+.||.|++.+.|.+--...+.++
T Consensus 4 P~~lP~FP~~HTY~~Tp~~~~~~~ 27 (51)
T PF10406_consen 4 PDWLPPFPDPHTYKRTPVYNEPET 27 (51)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 544799899744024898777779
No 13
>PF09419 DUF2010: Protein of unknown function
Probab=52.10 E-value=6 Score=17.07 Aligned_cols=76 Identities=11% Similarity=0.126 Sum_probs=41.2
Q ss_pred HHHHHHHHHCCCCCCEEEEEEECCH---------HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC----CCCEE
Q ss_conf 7999999966899944899980887---------8999999648989972888888799999999999952----89899
Q T0626 100 LADLLHRWHSDELDCDIACVISNHQ---------DLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHH----QADVV 166 (283)
Q Consensus 100 l~all~~~~~g~l~~ei~~visn~~---------~~~~~A~~~gIp~~~~~~~~~~~~~~e~~l~~~l~~~----~~Dli 166 (283)
+.+.+..++.-.... =.+++||++ .+..+++..|||++....+++... +++++.+... .|+=+
T Consensus 64 ~~~~l~~lk~~~~~~-~v~IVSNnags~~~~~~~~~~~~~~~lgi~v~~~~~kKP~~~---~~~l~~~~~~~~~~~p~ei 139 (168)
T PF09419_consen 64 VKEWLNELKKAFGKD-KVLIVSNNAGSRDDPDGERAKAFEKKLGIPVLRHSAKKPGCF---REILKYFGCKKVVTKPSEI 139 (168)
T ss_pred HHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCH---HHHHHHHHHCCCCCCCHHE
T ss_conf 999999999877996-299998997655674589999999864983797158799789---9999999753257881126
Q ss_pred EEECCCCCCCHHHH
Q ss_conf 97132000797999
Q T0626 167 VLARYMQILPPQLC 180 (283)
Q Consensus 167 vLAgymriL~~~~~ 180 (283)
++-|= |++++-+-
T Consensus 140 avVGD-rlfTDVl~ 152 (168)
T PF09419_consen 140 AVVGD-RLFTDVLG 152 (168)
T ss_pred EEECC-HHHHHHHH
T ss_conf 89865-67877997
No 14
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This family includes LamB. The lam locus of Aspergillus nidulans consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression . The exact molecular function of the proteins in this family is unknown.; PDB: 1xw8_A 1v6t_A 2dfa_A.
Probab=50.94 E-value=2.5 Score=19.67 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=63.4
Q ss_pred HHHHHHHCCCCEEEC-CCCC-CCH----HHHHHHHHHHHHHCCCCEEEEECCCCCCCHH--------HHHHCCCCEEEEC
Q ss_conf 999999648989972-8888-887----9999999999995289899971320007979--------9984179879842
Q T0626 126 LRSMVEWHDIPYYHV-PVDP-KDK----EPAFAEVSRLVGHHQADVVVLARYMQILPPQ--------LCREYAHQVINIH 191 (283)
Q Consensus 126 ~~~~A~~~gIp~~~~-~~~~-~~~----~~~e~~l~~~l~~~~~DlivLAgymriL~~~--------~~~~~~~riiNiH 191 (283)
+.++|+.+|.+-.|+ |+-. .+. ++.-+.+++.+++++|+|++++-.-..+-.. ..+.|..|-.+--
T Consensus 93 L~~~a~~~g~~l~hVKPHGALYN~aa~d~~lA~av~~av~~~~~~l~l~~~a~s~~~~~A~~~Gl~~~~E~FADR~Y~~d 172 (242)
T PF03746_consen 93 LQAIARAEGTRLHHVKPHGALYNDAARDEELARAVARAVKAFDPSLPLMGLAGSELEQAAKEAGLPVIFEAFADRAYDDD 172 (242)
T ss_dssp HHHHHHH----B-EE-----HHHHHHH-HHHHHHHHHHHHHH-TT-EEEEETT-HHHHHHHH----EEEEE-TTEEE---
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEEEEECCCCCCC
T ss_conf 99999984996568577788888884699999999999998799967998188199999998699389998334764799
Q ss_pred CCCCCCC-CCCCHH--HHHHHCCCCEEEEEEEEEECCCCCCCEEEEE-EEECCCCCCHHHHH
Q ss_conf 0217876-664279--9999838908445899870788879764001-67548898989999
Q T0626 192 HSFLPSF-VGAKPY--HQASLRGVKLIGATCHYVTEELDAGPIIEQD-VVRVSHRDSIENMV 249 (283)
Q Consensus 192 pSLLP~f-~G~~~~--~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~-~v~V~~~dt~e~L~ 249 (283)
-+|.|.- +|+--. .++.++-.... +-..|+ .+|+-+|-.+. ++- .|+|||..+.
T Consensus 173 G~LvpR~~~gAvi~d~~~~~~~~~~m~--~~g~v~-t~~G~~i~i~adTiC-vHGD~p~Av~ 230 (242)
T PF03746_consen 173 GSLVPRSQPGAVIHDPEEAAAQVLQMV--QEGKVT-TIDGKWIPIKADTIC-VHGDTPGAVE 230 (242)
T ss_dssp --EEETTT--EE---HHHHHHHHHHHH--H---EE-B----EE----SEEE-E----HHHHH
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHH--HCCCEE-ECCCCEEEEECCEEE-ECCCCHHHHH
T ss_conf 988867899975389999999999998--689889-247988774078789-7899877999
No 15
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This is a family of pankaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein .; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0006118 electron transport
Probab=49.87 E-value=6.5 Score=16.84 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=27.7
Q ss_pred CCCCCC-EEEEEEECCHHHHHHHHHCCCCEEECCC
Q ss_conf 689994-4899980887899999964898997288
Q T0626 109 SDELDC-DIACVISNHQDLRSMVEWHDIPYYHVPV 142 (283)
Q Consensus 109 ~g~l~~-ei~~visn~~~~~~~A~~~gIp~~~~~~ 142 (283)
+|+-.. ++.+-..++++|-+.|+++||+|.+...
T Consensus 43 S~D~~~q~v~L~F~skE~AiayAer~G~~y~V~ep 77 (101)
T PF04800_consen 43 SGDTLQQEVRLKFDSKEAAIAYAERQGWDYEVEEP 77 (101)
T ss_pred CCCHHHCCEEEEECCHHHHHHHHHHCCCEEEEECC
T ss_conf 88830082578659999999999984984899678
No 16
>PF11039 DUF2824: Protein of unknown function (DUF2824)
Probab=44.98 E-value=5.6 Score=17.25 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=41.6
Q ss_pred EEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHH------HHHHHCCCCEEEEEEEEEECCCCCCCEEEEE
Q ss_conf 997132000797999841798798420217876664279------9999838908445899870788879764001
Q T0626 166 VVLARYMQILPPQLCREYAHQVINIHHSFLPSFVGAKPY------HQASLRGVKLIGATCHYVTEELDAGPIIEQD 235 (283)
Q Consensus 166 ivLAgymriL~~~~~~~~~~riiNiHpSLLP~f~G~~~~------~~a~~~Gvk~~G~TvH~V~~~lD~GpII~Q~ 235 (283)
++|+|+-.+ +.+....+-.||-.+|.|+|...- +|-+++ ...-|.+-||-+..--|..|.|-
T Consensus 47 ~~l~G~~~v------~~i~~~~vecHavy~P~fRG~a~~~~~~F~rwll~N--s~f~~viT~vp~kt~~Gr~ic~l 114 (151)
T PF11039_consen 47 LQLGGIVYV------QEIRPLVVECHAVYDPGFRGYALEIGRLFCRWLLEN--STFQNVITFVPDKTRYGRVICRL 114 (151)
T ss_pred EEEEEEEEE------EEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCC--CCEEEEEEECCCCCCCHHHHHHH
T ss_conf 289889999------997610699874106552437899889999998508--84578899625667303889988
No 17
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR003753 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones . Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N-terminus.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex
Probab=44.14 E-value=7.9 Score=16.26 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=10.9
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 25755289998068875799999996
Q T0626 83 SAQKKRVVLMASRESHCLADLLHRWH 108 (283)
Q Consensus 83 ~~~~~riav~vS~~g~~l~all~~~~ 108 (283)
+.-+.||+|-.|.+|--++|.+.-.+
T Consensus 11 P~~p~rIgVITS~tgAa~~D~~~~l~ 36 (319)
T PF02601_consen 11 PRFPKRIGVITSPTGAAIQDFLRTLQ 36 (319)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 99988799995893279999999999
No 18
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2nrp_A 2nqm_B 2nqq_D 2nro_A 1g8r_A 2nqu_A 2nqr_A 2nqn_B 2nqs_A 1fc5_A ....
Probab=41.92 E-value=8.2 Score=16.13 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=39.0
Q ss_pred ECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC----HHHHHHCCCCE
Q ss_conf 08878999999648989972888888799999999999952898999713200079----79998417987
Q T0626 121 SNHQDLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYMQILP----PQLCREYAHQV 187 (283)
Q Consensus 121 sn~~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~l~~~l~~~~~DlivLAgymriL~----~~~~~~~~~ri 187 (283)
+|.+-+.++.+++|+.......-.++.+.-.+++.+.+++. |+|+..|=.-.-+ ++.+...-++-
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~I~~~i~~~~~~~--DlvittGG~g~~~~D~t~~a~~~~~~~~ 85 (144)
T PF00994_consen 17 TNGPFLASLLEEAGIEVIRYGIVPDDPDAIREAIRRALDRS--DLVITTGGTGPGPDDITPEALAELGERP 85 (144)
T ss_dssp HHHHHHHHHHHHSEEEEEEEEEEESSHHHHHHHHHHHHHTS--SEEEEE---B--TTCHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCC--CEEEECCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 49999999999889979899897979999999999984279--9999889977997889768899860853
No 19
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyze the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 3cea_A 3ec7_D 3euw_A 3ezy_B 3e18_A 2p2s_A 3dty_B 1tlt_B 1xea_D 3bio_A ....
Probab=41.41 E-value=8.7 Score=15.99 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=44.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCHH-HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 28999806887579999999668999448999808878-99999964898997288888879999999999995289899
Q T0626 88 RVVLMASRESHCLADLLHRWHSDELDCDIACVISNHQD-LRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVV 166 (283)
Q Consensus 88 riav~vS~~g~~l~all~~~~~g~l~~ei~~visn~~~-~~~~A~~~gIp~~~~~~~~~~~~~~e~~l~~~l~~~~~Dli 166 (283)
|+++.-. |+--...+.++..-.-..+++.+.+..++ +...++++++|+ +- + +.++++..++|++
T Consensus 2 rv~iIG~--G~~~~~~~~~~~~~~~~~~v~av~d~~~~~~~~~~~~~~~~~-~~-----~-------~~~~l~~~~~D~v 66 (120)
T PF01408_consen 2 RVGIIGA--GRIGKRHLRALRRSPPGVEVVAVVDPDPERAEAFAKEFGIPV-YT-----D-------LEELLEDPKIDAV 66 (120)
T ss_dssp EEEEECE---THHHHHHHHHHHTTTTEEEEEEESSSHHHHHHHHHHTTSEE-ES-----S-------HHHHHTHTTESEE
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCC-CC-----C-------HHHHHHCCCCCEE
T ss_conf 8999938--399999999999649993899998799999999999829974-28-----8-------9999725588989
Q ss_pred EEECCC
Q ss_conf 971320
Q T0626 167 VLARYM 172 (283)
Q Consensus 167 vLAgym 172 (283)
+.+---
T Consensus 67 ~I~tp~ 72 (120)
T PF01408_consen 67 IIATPP 72 (120)
T ss_dssp EEES-G
T ss_pred EEECCC
T ss_conf 995795
No 20
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN . This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance . Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC .; GO: 0003824 catalytic activity; PDB: 1g63_L 1g5q_D 1p3y_1 1e20_A 1mvl_A 1mvn_A 1qzu_A 2ejb_A 1sbz_A.
Probab=39.58 E-value=9.2 Score=15.80 Aligned_cols=73 Identities=23% Similarity=0.237 Sum_probs=41.2
Q ss_pred CCEEEEECCCCCCHHH--HHHHHHCCCCCCEEEEEEECCHHHHHH------HHHC----CCCEEECCCCCCCHHHHHHHH
Q ss_conf 5289998068875799--999996689994489998088789999------9964----898997288888879999999
Q T0626 87 KRVVLMASRESHCLAD--LLHRWHSDELDCDIACVISNHQDLRSM------VEWH----DIPYYHVPVDPKDKEPAFAEV 154 (283)
Q Consensus 87 ~riav~vS~~g~~l~a--ll~~~~~g~l~~ei~~visn~~~~~~~------A~~~----gIp~~~~~~~~~~~~~~e~~l 154 (283)
||+++.+||+...+.. ++.+.+. ...++.+|+|+ .+... .... +.+.+.-..+..... +-
T Consensus 1 k~i~v~itGs~~~~~~~~~l~~L~~--~~~~v~vv~S~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h 72 (122)
T PF02441_consen 1 KRILVGITGSSAAYKAPDLLRRLKK--PGVEVRVVLSK--AAERFITPEGLESLLKEQTGNPVYTDEEDIWAPI----EH 72 (122)
T ss_dssp -EEEEEE-S-GGGGGHHHHHHHHHT--TTSEEEEEE-H--HHHHHSHHGGSGGTSHHCTCSEEEETTTCTTSG-----HH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHH--CCCEEEEEECC--CHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCH----HH
T ss_conf 9799999488999999999999976--89989999896--3999988865244431447991795654356840----46
Q ss_pred HHHHHHCCCCEEEEE
Q ss_conf 999995289899971
Q T0626 155 SRLVGHHQADVVVLA 169 (283)
Q Consensus 155 ~~~l~~~~~DlivLA 169 (283)
.+.. ...|++|.+
T Consensus 73 ~~~~--~~~d~~vVa 85 (122)
T PF02441_consen 73 ISLS--RWADAMVVA 85 (122)
T ss_dssp HHHH--HTBSEEEEE
T ss_pred HHHC--CCCCEEEEC
T ss_conf 6650--103799982
No 21
>PF01297 SBP_bac_9: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of periplasmic solute binding proteins such as TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane of the bacterium. ; GO: 0005488 binding, 0030288 outer membrane-bounded periplasmic space; PDB: 1toa_A 1k0f_A 3hh8_A 1psz_A 1xvl_B 3cx3_B 2o1e_A 2ov3_A 1pq4_A 2ov1_A ....
Probab=36.85 E-value=10 Score=15.52 Aligned_cols=161 Identities=16% Similarity=0.101 Sum_probs=81.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEE-------EEE-E----EEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9998499974688988999975984866011105241767-------899-9----996078788989999999999887
Q T0626 6 LVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWF-------FMR-H----EIRADTLPFDLDGFREAFTPIAEE 73 (283)
Q Consensus 6 Ltv~gpD~~GIVA~Vs~~La~~g~NI~disQ~vd~~~g~F-------fMr-i----~~d~~~~~~~~~~l~~~l~~la~~ 73 (283)
+-..|.+--+=+.++..-....+..+++.++..+.....= -+- - ..+ +..=.+......-...+++.
T Consensus 78 iv~~G~~lE~~l~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~d-PH~Wldp~~~~~~a~~I~~~ 156 (303)
T PF01297_consen 78 IVYNGAGLEPWLDKLLENLSNNKVKVVDLSDGIGLLDIEEHDHDHEEGDHDHHDHGGYD-PHVWLDPDNAKKMAEAIADA 156 (303)
T ss_dssp EEES-TTSSTTHHHHHHHTTTTTTEEEETTCCTGGGBSCSETTT-TB---------SBE-STGGGSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHH
T ss_conf 99738753366888886325468708982044466666554565556776666546677-41230099999999999999
Q ss_pred HCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEC-CCC--CCCHHHH
Q ss_conf 2301220002575528999806887579999999668999448999808878999999648989972-888--8887999
Q T0626 74 FSMDWRITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACVISNHQDLRSMVEWHDIPYYHV-PVD--PKDKEPA 150 (283)
Q Consensus 74 ~~m~~~i~~~~~~~riav~vS~~g~~l~all~~~~~g~l~~ei~~visn~~~~~~~A~~~gIp~~~~-~~~--~~~~~~~ 150 (283)
|.-. ++..+....-=....-..|.+|-..++..--+..-.-+++.|+...-+++++|+....+ ... .+-....
T Consensus 157 L~~~----dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~vi~~h~a~~Y~~~~~gl~~~~~~~~~~~~eps~~~ 232 (303)
T PF01297_consen 157 LSEL----DPENKAYYEKNAEKFKAKLEELDKEIKAKLADIKGKRVITYHDAFGYFAKRYGLEVIGVLEISPESEPSPKD 232 (303)
T ss_dssp HHHH----TGGGHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSGGEEEESSS--HHHHHHTT-EEEESCSSSTSSS--HHH
T ss_pred HHHH----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCEEEEECCCCCCCCCCHHH
T ss_conf 9887----902289999999999999999999999997368998299988689999997799696400457889999999
Q ss_pred HHHHHHHHHHCCCCEEEEECC
Q ss_conf 999999999528989997132
Q T0626 151 FAEVSRLVGHHQADVVVLARY 171 (283)
Q Consensus 151 e~~l~~~l~~~~~DlivLAgy 171 (283)
=.++.+.+++.++.+|+.--.
T Consensus 233 l~~l~~~ik~~~v~~if~e~~ 253 (303)
T PF01297_consen 233 LAELIKLIKEHKVKVIFVEPQ 253 (303)
T ss_dssp HHHHHHHHHHTT-SBEEEBTT
T ss_pred HHHHHHHHHHCCCCEEEECCC
T ss_conf 999999999749988997688
No 22
>PF12471 GTP_CH_N: GTP cyclohydrolase N terminal
Probab=36.71 E-value=8.6 Score=16.01 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=32.3
Q ss_pred EEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCHH-------------HHHHHHHCCCC
Q ss_conf 99806887579999999668999448999808878-------------99999964898
Q T0626 91 LMASRESHCLADLLHRWHSDELDCDIACVISNHQD-------------LRSMVEWHDIP 136 (283)
Q Consensus 91 v~vS~~g~~l~all~~~~~g~l~~ei~~visn~~~-------------~~~~A~~~gIp 136 (283)
|-+++---+|..|-+++++|+|..|=.+|+..+-+ +.++|++|||.
T Consensus 125 IAvTkAhm~lpEi~eav~~GrL~~DG~i~~~~~G~~~VtK~AvePVWYLPGVA~RFGi~ 183 (194)
T PF12471_consen 125 IAVTKAHMKLPEIREAVAKGRLKPDGKIVLNSNGDVRVTKAAVEPVWYLPGVAERFGIS 183 (194)
T ss_pred HHHHHHHCCCHHHHHHHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCCHHHHHHCCCC
T ss_conf 34445426718899999849978887177158986889987623321361159780997
No 23
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus , the WalL protein, mannosyl-transferase , and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 2gn8_B 2gn4_A 2gn6_B 2gn9_A 2gna_B.
Probab=35.15 E-value=11 Score=15.34 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=15.2
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHCCCCEE----EEEEEEEEC
Q ss_conf 79842021787666427999998389084----458998707
Q T0626 187 VINIHHSFLPSFVGAKPYHQASLRGVKLI----GATCHYVTE 224 (283)
Q Consensus 187 iiNiHpSLLP~f~G~~~~~~a~~~Gvk~~----G~TvH~V~~ 224 (283)
+++---|.+|.| ++-+++|-.+| ..|=-|+|-
T Consensus 173 VlgS~GSVip~F------~~QI~~ggPvTvT~p~mtRffmTi 208 (295)
T PF02719_consen 173 VLGSRGSVIPLF------KKQIANGGPVTVTDPDMTRFFMTI 208 (295)
T ss_dssp B------HHHHH------HHHHHTTSSEEES-TT-EEE-B-S
T ss_pred EECCCCCHHHHH------HHHHHCCCCCCCCCCCCEEEEECH
T ss_conf 225888649999------999985998655999846899529
No 24
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein of about 430 to 470 amino acids. The family contains a glycine-rich region in the central part of AdoHcyase; a region thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon compound metabolic process; PDB: 3d64_B 3glq_B 1v8b_D 3ce6_A 2zj0_D 2zj1_C 2ziz_A 3dhy_B 3gvp_A 3g1u_C ....
Probab=34.02 E-value=11 Score=15.22 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=51.7
Q ss_pred CCCEEEEEEECC----HHH-HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH---HCCCCEEEEECCCCCCCHHHHHHC
Q ss_conf 994489998088----789-999996489899728888887999999999999---528989997132000797999841
Q T0626 112 LDCDIACVISNH----QDL-RSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVG---HHQADVVVLARYMQILPPQLCREY 183 (283)
Q Consensus 112 l~~ei~~visn~----~~~-~~~A~~~gIp~~~~~~~~~~~~~~e~~l~~~l~---~~~~DlivLAgymriL~~~~~~~~ 183 (283)
+-|+|...-||- .|+ .+++ +.||+.+- ....+.+++...+...|. ..+||+|+=-|---+ ...
T Consensus 66 ~GAeV~~~~sNPlSTQDdvAAAL~-~~Gi~VfA--~~get~eey~~~l~~~L~~~~~~~P~iiiDDG~Dl~------~~l 136 (268)
T PF05221_consen 66 GGAEVRWTGSNPLSTQDDVAAALA-EEGIPVFA--WKGETPEEYYWCLEKALDWQDDHGPDIIIDDGADLT------TLL 136 (268)
T ss_dssp ---EEEEEBSSSST--HHHHHHHH-HTTEEEEE---TT--HHHHHHHHHHHHS-SSTS--SEEEE----HH------HHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHH-HCCCEEEE--ECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCHHHH------HHH
T ss_conf 598799851684322468999887-37935999--689997999999999863689999887752537899------999
Q ss_pred CCCEEEECCCCCCCCCCCC
Q ss_conf 7987984202178766642
Q T0626 184 AHQVINIHHSFLPSFVGAK 202 (283)
Q Consensus 184 ~~riiNiHpSLLP~f~G~~ 202 (283)
..-+|.+++...|..
T Consensus 137 ----h~~~~~l~~~i~G~s 151 (268)
T PF05221_consen 137 ----HTKRPELLKNIIGGS 151 (268)
T ss_dssp ----HHHHHHHHCT----E
T ss_pred ----HHHHHHHHHHEEEEE
T ss_conf ----999986676424100
No 25
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyzes the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) . This enzyme participates in the methionine salvage pathway catalyzing the isomerization of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate . The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1t9k_C 2yrf_B 2yvk_C 2a0u_A 1w2w_J 1vb5_A 1t5o_B.
Probab=32.06 E-value=12 Score=15.01 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=38.5
Q ss_pred CCCEEEEECCCCCCHH-HHHHHHHCCCCCCEEEEEEECCHHHHH-----HHHHCCCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 5528999806887579-999999668999448999808878999-----9996489899728888887999999999999
Q T0626 86 KKRVVLMASRESHCLA-DLLHRWHSDELDCDIACVISNHQDLRS-----MVEWHDIPYYHVPVDPKDKEPAFAEVSRLVG 159 (283)
Q Consensus 86 ~~riav~vS~~g~~l~-all~~~~~g~l~~ei~~visn~~~~~~-----~A~~~gIp~~~~~~~~~~~~~~e~~l~~~l~ 159 (283)
..+-.||.-+.+++.. .|+.+++.| -+.++. |.-++|...+ ...++|||+.+++-. .+...++
T Consensus 105 ~~~~~ILT~~~S~~v~~~l~~a~~~~-~~f~V~-v~es~P~~eG~~~a~~L~~~Gi~vt~i~ds---------~v~~~m~ 173 (281)
T PF01008_consen 105 HDGDVILTHGYSSTVLKFLLHAHKQG-KKFRVI-VTESRPYNEGRLTAKELSEAGIPVTLIPDS---------AVGYIMP 173 (281)
T ss_dssp -SCEEEEEES--HHCCHHHHHHHHTT-BEEEEE-EE--TTTT---SHHHHHHHCT-EEEEE-GG---------GHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CCEEEE-EECCCCCCCCCHHHHHHHHCCCCEEEECHH---------HHHHHHH
T ss_conf 89988999689489999999999869-937999-946897624508999998779958997688---------9999999
Q ss_pred HCCCCEEEEE
Q ss_conf 5289899971
Q T0626 160 HHQADVVVLA 169 (283)
Q Consensus 160 ~~~~DlivLA 169 (283)
. ++|.+++.
T Consensus 174 ~-~vd~VllG 182 (281)
T PF01008_consen 174 R-MVDKVLLG 182 (281)
T ss_dssp H-TESEEEE-
T ss_pred H-HCCEEEEE
T ss_conf 7-59999982
No 26
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamin pyrophosphate binding; PDB: 1t9d_D 1jsc_A 1t9b_A 1n0h_B 1t9c_B 1t9a_A 1ybh_A 1z8n_A 1yhz_A 1yi0_A ....
Probab=29.82 E-value=9.5 Score=15.72 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=36.8
Q ss_pred HHHHHHHHHCCCCEEECCCCCC----CHHHH--------HHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHCC--CCE
Q ss_conf 7899999964898997288888----87999--------9999999995289899971320--007979998417--987
Q T0626 124 QDLRSMVEWHDIPYYHVPVDPK----DKEPA--------FAEVSRLVGHHQADVVVLARYM--QILPPQLCREYA--HQV 187 (283)
Q Consensus 124 ~~~~~~A~~~gIp~~~~~~~~~----~~~~~--------e~~l~~~l~~~~~DlivLAgym--riL~~~~~~~~~--~ri 187 (283)
+.+.++|++.|+|+...+..+. +-+.+ .....+.++ +.|+|+..|.- ...+..+...|. .++
T Consensus 29 ~~l~~lae~~~~Pv~tt~~~kg~~~~~hp~~~G~~G~~~~~~~~~~~~--~aDlil~iG~~~~~~~~~~~~~~~~~~~~~ 106 (137)
T PF00205_consen 29 EELRELAEKLGIPVVTTPMGKGAFPEDHPLYLGYLGMAGSPAANEALE--EADLILAIGTRLSDFNTGGYSAKFNPDAKI 106 (137)
T ss_dssp HHHHHHHHHHT-EEEEBGGGCCCSTTTSTTBEEB-SCCSGHHHHHHHH--H-SEEEEES--SCTTTTSCCCGGTSTTSEE
T ss_pred HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--CCCEEEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf 999999998699989846656617999976266587767799999998--299999988988842345630004999969
Q ss_pred EEECCCC
Q ss_conf 9842021
Q T0626 188 INIHHSF 194 (283)
Q Consensus 188 iNiHpSL 194 (283)
|.|++.-
T Consensus 107 I~id~d~ 113 (137)
T PF00205_consen 107 IQIDIDP 113 (137)
T ss_dssp EEEESSG
T ss_pred EEEECCH
T ss_conf 9998899
No 27
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure .; PDB: 3h5l_A 1ewt_B 1isr_A 1ewv_A 1iss_B 1ewk_B 2e4z_A 2e4w_A 2e4u_B 2e4v_B ....
Probab=29.57 E-value=13 Score=14.73 Aligned_cols=76 Identities=18% Similarity=0.175 Sum_probs=39.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC-----CCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 999849997468898899997598486601110524-----176789999960787889899999999998872301220
Q T0626 6 LVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNL-----SGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMDWRI 80 (283)
Q Consensus 6 Ltv~gpD~~GIVA~Vs~~La~~g~NI~disQ~vd~~-----~g~FfMri~~d~~~~~~~~~~l~~~l~~la~~~~m~~~i 80 (283)
.-++||-..+-...+...+.+.++-.+..+...+.. ...++.|+.-... . .-.++.++.+++
T Consensus 53 ~~iiG~~~s~~~~a~~~~~~~~~ip~is~~a~~~~l~~~~~~~~~~~r~~p~~~----~---~~~~~~~~~~~~------ 119 (348)
T PF01094_consen 53 DAIIGPSSSAVALAVAPIAEEANIPFISPSATSPALSDRKNKYPYFFRTSPSDS----Q---QARALAEFLKKF------ 119 (348)
T ss_dssp SEEE---SHHHHHHHHHHHHHTT-EEEESSHHHGGGGTCTTTTTTEEESSB-CC----C---HHHHHHHHHHHT------
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHEECCCCCCCCEEECCCCCH----H---HHHHHHHHHHHC------
T ss_conf 999948414556999999741477602242331120001357873001035807----7---778899999972------
Q ss_pred HCCCCCCCEEEEECCCCC
Q ss_conf 002575528999806887
Q T0626 81 TDSAQKKRVVLMASRESH 98 (283)
Q Consensus 81 ~~~~~~~riav~vS~~g~ 98 (283)
.-+|++++.+....
T Consensus 120 ----~~~~v~vl~~~~~~ 133 (348)
T PF01094_consen 120 ----GWKKVAVLYSDDDY 133 (348)
T ss_dssp ----TSSEEEEEEESSSC
T ss_pred ----CCCEEEEECCCCCH
T ss_conf ----98379997043101
No 28
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate . PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain , . The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase . ; GO: 0003824 catalytic activity; PDB: 3ewb_X 3fig_A 1sr9_A 1nvm_C 3dxi_B 2cw6_E 2ftp_A 1ydn_A 1ydo_C 3bg3_B ....
Probab=28.04 E-value=14 Score=14.56 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=85.8
Q ss_pred HHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEECCC
Q ss_conf 88988999975984866011105241767899999607878898999999999988723012200025755289998068
Q T0626 17 VAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMDWRITDSAQKKRVVLMASRE 96 (283)
Q Consensus 17 VA~Vs~~La~~g~NI~disQ~vd~~~g~FfMri~~d~~~~~~~~~~l~~~l~~la~~~~m~~~i~~~~~~~riav~vS~~ 96 (283)
.-.+.+.|.+.|+..+++-- ......+.+.++ .+.+.. ...++..++...
T Consensus 16 k~~i~~~L~~~Gv~~IE~g~----------------~~~~~~~~~~~~----~~~~~~----------~~~~i~~~~~~~ 65 (237)
T PF00682_consen 16 KVRIAEALDEAGVDSIEVGF----------------PFVSEDDFEAMR----AIREVG----------PNAKIAALCRPG 65 (237)
T ss_dssp HHHHHHHHHHTTTSEEEEEH----------------HTS-TTHHHHHH----HHHHHH----------TSSEEEEEEEHH
T ss_pred HHHHHHHHHHCCCCEEEEEC----------------CCCCCCHHHHHH----HHHHHH----------CCCCEEEEEECC
T ss_conf 99999999984959999827----------------768931588899----899861----------047410588432
Q ss_pred CCCHHHHHHHHH-CCCCCCEEEEEEEC--------------CHHH---HHHHHHCCCCEEECC-CCCCCHHHHHHHHHHH
Q ss_conf 875799999996-68999448999808--------------8789---999996489899728-8888879999999999
Q T0626 97 SHCLADLLHRWH-SDELDCDIACVISN--------------HQDL---RSMVEWHDIPYYHVP-VDPKDKEPAFAEVSRL 157 (283)
Q Consensus 97 g~~l~all~~~~-~g~l~~ei~~visn--------------~~~~---~~~A~~~gIp~~~~~-~~~~~~~~~e~~l~~~ 157 (283)
--....-+++.+ .|---..+..=+|+ -..+ -+.|++.|+...+-+ .......++=.++.+.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 145 (237)
T PF00682_consen 66 IEDIERALEAAKAAGVDRIRIFISVSDAHRKANLNKSREEALDKIEEAIEYAKDLGIEVSFSPEDASRADPEYLLELAER 145 (237)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEEEETSHHHHHHHCSSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 42369999997657999999972375888999957999999999999999999819969967832455899999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHH--------CCCCEEEECCCCCCCCCCCCH--HHHHHHCCCCEEEEEEE
Q ss_conf 9952898999713200079799984--------179879842021787666427--99999838908445899
Q T0626 158 VGHHQADVVVLARYMQILPPQLCRE--------YAHQVINIHHSFLPSFVGAKP--YHQASLRGVKLIGATCH 220 (283)
Q Consensus 158 l~~~~~DlivLAgymriL~~~~~~~--------~~~riiNiHpSLLP~f~G~~~--~~~a~~~Gvk~~G~TvH 220 (283)
+.++++|.|.++-=.=.++|.-+.. +++--+-+|-- .=.|... .-.|+++|+...=+|+.
T Consensus 146 ~~~~g~~~i~l~Dt~G~~~P~~~~~li~~l~~~~~~~~l~~H~H---nd~Gla~AN~laA~~aGa~~vd~s~~ 215 (237)
T PF00682_consen 146 LEEAGADRIYLADTVGVLTPEDVAELIRALRRRLPNIPLGFHCH---NDLGLAVANSLAALEAGADRVDGSLN 215 (237)
T ss_dssp HHHCT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSGEEEEE----TTTS-HHHHHHHHHH----EEEEB-G
T ss_pred HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC---CCCCHHHHHHHHHHHHCCCEEECCCC
T ss_conf 99709839996387568499999999999998769946999963---78574999999999948999986786
No 29
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium . Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety , . THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate .; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamin biosynthetic process; PDB: 3dzv_B 3hpd_A 1c3q_C 1ekk_B 1ekq_A 1esq_C 1esj_C.
Probab=27.81 E-value=14 Score=14.53 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=25.5
Q ss_pred HHHHHHCCCCEEECCCCCC-CHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9999964898997288888-8799999999999952898999
Q T0626 127 RSMVEWHDIPYYHVPVDPK-DKEPAFAEVSRLVGHHQADVVV 167 (283)
Q Consensus 127 ~~~A~~~gIp~~~~~~~~~-~~~~~e~~l~~~l~~~~~Dliv 167 (283)
...|.+.|+|++.-|+... ++... +-..++|++++|+.|=
T Consensus 72 ~~~A~~~~~PvVLDPVgvGas~~R~-~~~~~ll~~~~~~vIr 112 (246)
T PF02110_consen 72 GKAANELGIPVVLDPVGVGASKFRT-EIAKELLEEYKPTVIR 112 (246)
T ss_dssp HHHHHHCT--EEEE-------HHHH-HHHHHHHHHT--SEEE
T ss_pred HHHHHHCCCCEEEECCCCCCCHHHH-HHHHHHHHHCCCCEEC
T ss_conf 9999973998897181058868999-9999999837963453
No 30
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulphurases.; GO: 0008483 transaminase activity, 0008152 metabolic process; PDB: 2hzp_A 3e9k_A 1qz9_A 1n2t_B 1elu_A 1n31_A 1elq_B 2bkw_A 2yrr_B 2yri_A ....
Probab=26.63 E-value=15 Score=14.39 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC-EEEEEEECCHHH----HHHHHHCCC
Q ss_conf 999999999988723012200025755289998068875799999996689994-489998088789----999996489
Q T0626 61 DGFREAFTPIAEEFSMDWRITDSAQKKRVVLMASRESHCLADLLHRWHSDELDC-DIACVISNHQDL----RSMVEWHDI 135 (283)
Q Consensus 61 ~~l~~~l~~la~~~~m~~~i~~~~~~~riav~vS~~g~~l~all~~~~~g~l~~-ei~~visn~~~~----~~~A~~~gI 135 (283)
+.+++.-+.+++-+|.+ ...-.+|+++.++.+..++......--+. +|.+.-.+++.. ..++++.|+
T Consensus 43 ~~~~~~r~~la~ll~~~--------~~~~i~f~~~~t~~~~~~~~~l~~~~~~g~~il~~~~e~~s~~~~~~~~~~~~g~ 114 (371)
T PF00266_consen 43 EIVEEAREKLARLLGAP--------PPEEIAFTSNTTEALNAVLRSLRRNLKPGDEILVTNNEHPSNRLPWEELAERKGA 114 (371)
T ss_dssp HHHHHHHHHHHHHHTSS--------GTGEEEEESSHHHHHHHHHHHHHHHTTSSSEEEEECTSHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHHCCC--------CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999999999971998--------5333232246655432330001134455421022233562046799875430530
Q ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 89972888888799999999999952898999713
Q T0626 136 PYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLAR 170 (283)
Q Consensus 136 p~~~~~~~~~~~~~~e~~l~~~l~~~~~DlivLAg 170 (283)
....++.......+. +++.+.+. -+++++++..
T Consensus 115 ~v~~~~~~~~~~~~~-~~l~~~i~-~~~~lv~~s~ 147 (371)
T PF00266_consen 115 EVREIPVDPGGEVDL-EELEEAID-PRTRLVSISH 147 (371)
T ss_dssp EEEEEEBGTTSSBSH-HHHHHHHH-TTEEEEEEES
T ss_pred EEEEECCCCCCCHHH-HHHHHHHC-CCCCEEEEEC
T ss_conf 269941333210114-66777634-6862698622
No 31
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families , , . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. This domain is found in family 53 of the glycosyl hydrolase classification . These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 2gft_A 1r8l_B 2j74_A 1ur4_B 1ur0_A 2ccr_A 1hjq_A 1hju_A 1hjs_C 1fob_A ....
Probab=26.13 E-value=15 Score=14.33 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEECCCCCCCCC
Q ss_conf 99974688988999975984866011105241
Q T0626 11 PDRVGIVAKVSNFLASHNGWITEASHHSDNLS 42 (283)
Q Consensus 11 pD~~GIVA~Vs~~La~~g~NI~disQ~vd~~~ 42 (283)
.|.-|.....-++|.++|+|-+-+.-.+|+..
T Consensus 20 ~d~~G~~~d~~~iLk~~GvN~vRlRvWvnP~~ 51 (332)
T PF07745_consen 20 YDENGQEKDLFQILKDHGVNYVRLRVWVNPYD 51 (332)
T ss_dssp B-----B--HHHHHHH----EEEEEE-SS-S-
T ss_pred ECCCCCCCCHHHHHHHCCCCEEEEEEEECCCC
T ss_conf 89999888899999976998699998677764
No 32
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 This bacterial family of Acyl transferases (or myristoyl-acp-specific thioesterases) catalyse the first step in the bioluminescent fatty acid reductase system , , .; GO: 0008415 acyltransferase activity, 0006631 fatty acid metabolic process; PDB: 1tht_B.
Probab=25.98 E-value=11 Score=15.20 Aligned_cols=155 Identities=17% Similarity=0.164 Sum_probs=83.4
Q ss_pred HHHHHHHHHHCCCCEEECCCC--CCCCCCE---EEEEEEEEECCCCCCHHHHHHHHHH--------HHHHHCCHHHHHCC
Q ss_conf 889889999759848660111--0524176---7899999607878898999999999--------98872301220002
Q T0626 17 VAKVSNFLASHNGWITEASHH--SDNLSGW---FFMRHEIRADTLPFDLDGFREAFTP--------IAEEFSMDWRITDS 83 (283)
Q Consensus 17 VA~Vs~~La~~g~NI~disQ~--vd~~~g~---FfMri~~d~~~~~~~~~~l~~~l~~--------la~~~~m~~~i~~~ 83 (283)
-|+.+.+|+++|.+.+--+.. +-..+|. |.|- ...-++.+.-+.+.. +|..++..+-....
T Consensus 46 ~a~lA~yLs~NGFhViRyDsl~H~GlSsG~i~eftms------~gk~sL~~VidWL~~rg~~~iG~ia~SLsAriay~~~ 119 (294)
T PF02273_consen 46 FAGLAEYLSDNGFHVIRYDSLHHVGLSSGEINEFTMS------IGKYSLLQVIDWLKERGITKIGLIAASLSARIAYEVA 119 (294)
T ss_dssp G---HHHHHT----EEEE---B-------------S----------HHHHHHHHHHHH--------EEECHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC------CCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
T ss_conf 9889998633870599752223557776750101101------2521299999998755974342110020367788773
Q ss_pred CCCCCEEEEECCCC-CCHHHHHHHHHC-CCCCCEEE-----EEEECC--------HHHHH-----------HHHHCCCCE
Q ss_conf 57552899980688-757999999966-89994489-----998088--------78999-----------999648989
Q T0626 84 AQKKRVVLMASRES-HCLADLLHRWHS-DELDCDIA-----CVISNH--------QDLRS-----------MVEWHDIPY 137 (283)
Q Consensus 84 ~~~~riav~vS~~g-~~l~all~~~~~-g~l~~ei~-----~visn~--------~~~~~-----------~A~~~gIp~ 137 (283)
+ ..++.-+++--| .||++.|.+.-. ..|..+|. +..-.| .||.. --+...||+
T Consensus 120 s-e~~vsFLITavGvvnLr~tLe~al~~DyL~lpi~~lpedldFegh~lgs~vfvtdcf~~~wd~~~St~~~~~~l~iPf 198 (294)
T PF02273_consen 120 S-EINVSFLITAVGVVNLRDTLERALKYDYLQLPIEELPEDLDFEGHNLGSEVFVTDCFENNWDTLDSTINKIKNLSIPF 198 (294)
T ss_dssp T-TS--S-EEEE-----HHHHHHHH----GGGS-GGG--S-EE----EE--HHHHHHHHHTT-SSHHHHHHHHTT--S-E
T ss_pred C-CCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCEEEEHHHHHCCCCCCCCHHHHHCCCCCCE
T ss_conf 2-665058987155012999999862872203883459741112255666212416677638864216688850468867
Q ss_pred EECCCCCCC--HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf 972888888--79999999999995289899971320007979
Q T0626 138 YHVPVDPKD--KEPAFAEVSRLVGHHQADVVVLARYMQILPPQ 178 (283)
Q Consensus 138 ~~~~~~~~~--~~~~e~~l~~~l~~~~~DlivLAgymriL~~~ 178 (283)
..+-...++ ++.--.+++..++..++.+--|-|--.=|+..
T Consensus 199 iaf~an~D~wV~q~ev~e~l~~i~~~~~kiysl~gsshdlgen 241 (294)
T PF02273_consen 199 IAFTANDDDWVKQSEVEELLDNINSGKCKIYSLIGSSHDLGEN 241 (294)
T ss_dssp EEEEETT-TTS-HHHHHHHHTT-----EEEEEE----S-----
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
T ss_conf 9998279850018999999971798762699973474420024
No 33
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This family represents a conserved region of approximately 180 residues within plant and bacterial monogalactosyldiacylglycerol (MGDG) synthase (2.4.1.46 from EC). In Arabidopsis, there are two types of MGDG synthase which differ in their N-terminal portion: type A and type B .
Probab=25.62 E-value=15 Score=14.27 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999999999528989997132
Q T0626 150 AFAEVSRLVGHHQADVVVLARY 171 (283)
Q Consensus 150 ~e~~l~~~l~~~~~DlivLAgy 171 (283)
...++.++|++++||+||.--.
T Consensus 77 ~~~~l~~~i~~~~PDvII~Thp 98 (169)
T PF06925_consen 77 FARKLRKLIEEYRPDVIISTHP 98 (169)
T ss_pred HHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999999809599999980
No 34
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1mbz_B 1mc1_B 1jgt_A 1mb9_B 1m1z_B 1q15_B 1q19_B 1ct9_A.
Probab=25.62 E-value=15 Score=14.27 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=33.0
Q ss_pred CCCCEEEEECCC-CCCHHHHHHHHHCCCCCCEEEEE---EECCH--H---HHHHHHHCCCCEEECCCC
Q ss_conf 755289998068-87579999999668999448999---80887--8---999999648989972888
Q T0626 85 QKKRVVLMASRE-SHCLADLLHRWHSDELDCDIACV---ISNHQ--D---LRSMVEWHDIPYYHVPVD 143 (283)
Q Consensus 85 ~~~riav~vS~~-g~~l~all~~~~~g~l~~ei~~v---isn~~--~---~~~~A~~~gIp~~~~~~~ 143 (283)
....++++.||. +|..-+.+-+. .....+..+ ..+.+ + +..+|+..|++.+.++.+
T Consensus 16 ~~~~v~~~LSGGlDSs~ia~~~~~---~~~~~~~~~t~~~~~~~~~E~~~a~~va~~~g~~~~~v~~~ 80 (269)
T PF00733_consen 16 SDKPVGVLLSGGLDSSAIAALAAR---QSGPPIKTFTIGFEGAEYDEREYARKVAEHLGLEHHEVELS 80 (269)
T ss_dssp GSSEEEEE-----HHHHHHHHHHH----CSSEEEEEE---TSSH--HHHHHHHHHHHHT-EEEE----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEECCC
T ss_conf 699789989980999999999998---53999727998769986138999999987338657541458
No 35
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.39 E-value=16 Score=14.12 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCCCCEEEEEEECCHHHH----HHHHHC-CCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 7999999966899944899980887899----999964-898997288888879999999999995289899971
Q T0626 100 LADLLHRWHSDELDCDIACVISNHQDLR----SMVEWH-DIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLA 169 (283)
Q Consensus 100 l~all~~~~~g~l~~ei~~visn~~~~~----~~A~~~-gIp~~~~~~~~~~~~~~e~~l~~~l~~~~~DlivLA 169 (283)
+.+++...... +..|-++-+.-..+. .+.+++ |+.......-+.+ ++.++++++.+++.+||+|+++
T Consensus 37 ~~~l~~~~~~~--~~rifllG~~~~~~~~~~~~l~~~yP~l~i~G~~~g~f~-~~e~~~i~~~I~~s~pdiv~vg 108 (172)
T PF03808_consen 37 FPDLLRYAERR--GKRIFLLGGSEEVLEKAAERLRARYPGLQIVGYYHGYFG-PEEEEAIIEAINASGPDIVFVG 108 (172)
T ss_pred HHHHHHHHHHC--CCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC-HHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999987761--983999909889999999999988899718852499999-7899999999997296999998
No 36
>PF00867 XPG_I: XPG I-region; InterPro: IPR006086 Xeroderma pigmentosum (XP) is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region . XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. ; GO: 0004518 nuclease activity, 0006281 DNA repair; PDB: 1ul1_X 1a77_A 1a76_A 1rxv_B 1rxw_A 1b43_A 1mc8_B 2izo_A.
Probab=24.39 E-value=16 Score=14.12 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=25.1
Q ss_pred HHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9648989972888888799999999999952898999713
Q T0626 131 EWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLAR 170 (283)
Q Consensus 131 ~~~gIp~~~~~~~~~~~~~~e~~l~~~l~~~~~DlivLAg 170 (283)
+..|||++.-| .|+|+++..+.+.-.+|.|+.--
T Consensus 1 ~~~gv~~i~AP------~EAeAq~a~L~~~g~vd~v~t~D 34 (92)
T PF00867_consen 1 REFGVPYIVAP------YEAEAQCAYLCRSGIVDAVITED 34 (92)
T ss_dssp HH----EEE-S------S-HHHHHHHHHH----SEEE-SS
T ss_pred CCCCCEEEEEC------CCHHHHHHHHHHCCCEEEEECCC
T ss_conf 97797089927------24999999998538770998266
No 37
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 1gso_A 1vkz_B 2qk4_A 2ys6_A 2yrw_A 2ys7_A 2yrx_A 2ip4_B 2yw2_A 2yya_A ....
Probab=24.18 E-value=16 Score=14.10 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=34.1
Q ss_pred EEECCCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 998068875799999996689994489998088789999996489899728888887999999999999528989997
Q T0626 91 LMASRESHCLADLLHRWHSDELDCDIACVISNHQDLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVL 168 (283)
Q Consensus 91 v~vS~~g~~l~all~~~~~g~l~~ei~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~l~~~l~~~~~DlivL 168 (283)
||+=|+|---.||.++..+-..--++-+.-. ++....+++...| + -.++ +++.+..++.++||+|.
T Consensus 3 VLviGsGgREHAla~~l~~S~~v~~v~~apG-N~G~~~~~~~~~i-------~---~~d~-~~i~~~a~~~~idlvvv 68 (100)
T PF02844_consen 3 VLVIGSGGREHALAWALAQSPRVDEVYVAPG-NPGTARLAENVNI-------D---ITDI-EEIVDFAKENNIDLVVV 68 (100)
T ss_dssp EEE------HHHHHHHHTTCTTEEEEEEE-------TTTSEEE-S-----------TT-H-HHHHHHHHHTTESEEE-
T ss_pred EEEECCCHHHHHHHHHHHCCCCCCEEEEECC-CHHHHHHCCCCCC-------C---CCCH-HHHHHHHHHCCCCEEEE
T ss_conf 9998788599999999962998788999289-8477763421178-------9---6899-99999999849998998
No 38
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme , the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family . The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases . This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 1s4m_B 1t6z_A 1mrz_B 1t6y_B 2i1l_A 1t6x_B.
Probab=22.86 E-value=17 Score=13.93 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=55.1
Q ss_pred HHHHHHCCCCEEECCCCCC-----------CHHHHHHHHHHHHHHCCCCEEEEECCCC----CCCHHHHHHCCCCEEEEC
Q ss_conf 9999964898997288888-----------8799999999999952898999713200----079799984179879842
Q T0626 127 RSMVEWHDIPYYHVPVDPK-----------DKEPAFAEVSRLVGHHQADVVVLARYMQ----ILPPQLCREYAHQVINIH 191 (283)
Q Consensus 127 ~~~A~~~gIp~~~~~~~~~-----------~~~~~e~~l~~~l~~~~~DlivLAgymr----iL~~~~~~~~~~riiNiH 191 (283)
.+.|++.|.|..++..+.. .+--..++=+++++++++|.+++-.|-+ +=+.+|++.+=-+-+|.-
T Consensus 29 ~~~A~~~~~~~~v~TF~phP~~~l~~~~~~~~L~~~~~k~~~l~~~Gid~~~~~~F~~~~a~ls~e~Fi~~iL~~~l~~~ 108 (157)
T PF06574_consen 29 VEIAKENGLPSVVLTFDPHPREVLRPDKPPKLLTTLEEKLELLEKLGIDYVIVLPFTKEFANLSPEDFIEEILVKKLNAK 108 (157)
T ss_dssp HHHHHHHT--EEEEEESS-GGGGSTT-------S-HHHHHHHHCTT--SEEEEE-HHH-HTTS-----HHHHC-------
T ss_pred HHHHHHCCCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 65323225775899986988997798776724899999999998616897999822889875999999999997457988
Q ss_pred -----CCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCEE
Q ss_conf -----02178766642799999838908445899870788879764
Q T0626 192 -----HSFLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPII 232 (283)
Q Consensus 192 -----pSLLP~f~G~~~~~~a~~~Gvk~~G~TvH~V~~~lD~GpII 232 (283)
.-+-=.+++.+-+..--+. -+..|..|+-|.+-.+.|..|
T Consensus 109 ~ivvG~Df~FG~~r~G~~~~L~~~-~~~~g~~v~~v~~~~~~g~~I 153 (157)
T PF06574_consen 109 HIVVGEDFRFGKKRSGNVELLKEL-GKEYGFEVEVVPPVKDDGERI 153 (157)
T ss_dssp EEEE--------TT---HHHHHH--------EEEE----B----B-
T ss_pred EEEECCCCCCCCCCCCCHHHHHHH-CCCCCEEEEEECCEECCCEEE
T ss_conf 899877767899999899999864-153882999979897199276
No 39
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site . ; PDB: 1g8m_B 2iu0_B 1m9n_A 2b1g_C 2iu3_B 1oz0_A 1thz_B 2b1i_A 1pl0_D 1pkx_D ....
Probab=21.36 E-value=13 Score=14.72 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=6.7
Q ss_pred HHHHHHHHCCCCEEE
Q ss_conf 999999952898999
Q T0626 153 EVSRLVGHHQADVVV 167 (283)
Q Consensus 153 ~l~~~l~~~~~Dliv 167 (283)
++.+.+++.++|+|+
T Consensus 51 ~i~~~i~~~~IdlVI 65 (95)
T PF02142_consen 51 QILDLIKNGKIDLVI 65 (95)
T ss_dssp HHHHHHTHHTECEEE
T ss_pred HHHHHHHCCCEEEEE
T ss_conf 999999839816999
No 40
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 In yeast, 15 autophagy (Apg) proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells . Apg12 is covalently bound to Apg5 .; GO: 0000045 autophagic vacuole formation, 0005737 cytoplasm; PDB: 1wz3_A.
Probab=20.68 E-value=19 Score=13.63 Aligned_cols=52 Identities=17% Similarity=0.379 Sum_probs=35.6
Q ss_pred EEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCE
Q ss_conf 58998707888797640016754889898999999999889999999998759838983764
Q T0626 217 ATCHYVTEELDAGPIIEQDVVRVSHRDSIENMVRFGRDVEKMVLARGLRAHLEDRVLVHDNK 278 (283)
Q Consensus 217 ~TvH~V~~~lD~GpII~Q~~v~V~~~dt~e~L~~~~~~~E~~~l~~av~~~~e~rv~~~~~k 278 (283)
+|++|..-+ .-||+-|..+.|...++.+.+.+-.+.. +++-..+.+++|=|-
T Consensus 2 V~v~fk~iG--~aPilk~~~~kis~~~~f~~vi~FLrk~--------Lk~~~~~slflYin~ 53 (87)
T PF04110_consen 2 VTVRFKPIG--SAPILKQKKFKISASQTFSTVIKFLRKK--------LKLQASESLFLYINN 53 (87)
T ss_dssp EEEEEEEE--------S--EEEE----BTHHHHHHHHHH--------CT----SS-EEEEEE
T ss_pred EEEEEEECC--CCCCCCCCEEEECCCCCHHHHHHHHHHH--------HCCCCCCCEEEEECC
T ss_conf 799998668--9863346549977998879999999998--------677578839999856
No 41
>PF09839 DUF2066: Uncharacterized protein conserved in bacteria (DUF2066)
Probab=20.51 E-value=9.5 Score=15.72 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=57.5
Q ss_pred CEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 76789999960787889899999999998872301220002575528999806887579999999668999448999808
Q T0626 43 GWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMDWRITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACVISN 122 (283)
Q Consensus 43 g~FfMri~~d~~~~~~~~~~l~~~l~~la~~~~m~~~i~~~~~~~riav~vS~~g~~l~all~~~~~g~l~~ei~~visn 122 (283)
+..++.+.|+.. .+...|.+. ++. ....+||.+.+.+.-.+..=..|+. -=|+
T Consensus 71 ~~~~L~v~Fd~~-------~v~~lL~~a----~lp---~W~~~RP~vLvWl~~e~~~~r~lv~-------------~~~~ 123 (234)
T PF09839_consen 71 YQLYLQVSFDPQ-------AVRRLLRQA----GLP---VWGANRPLVLVWLVVEDGGGRRLVW-------------DESD 123 (234)
T ss_pred CCEEEEEEECHH-------HHHHHHHHC----CCC---CCCCCCCCEEEEEEEECCCCCEEEC-------------CCCC
T ss_conf 753799995789-------999999974----998---6677898489999993699855645-------------8888
Q ss_pred ---CHHHHHHHHHCCCCEEECCCC-C-----CC----HHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf ---878999999648989972888-8-----88----7999999999999528989997132000
Q T0626 123 ---HQDLRSMVEWHDIPYYHVPVD-P-----KD----KEPAFAEVSRLVGHHQADVVVLARYMQI 174 (283)
Q Consensus 123 ---~~~~~~~A~~~gIp~~~~~~~-~-----~~----~~~~e~~l~~~l~~~~~DlivLAgymri 174 (283)
...+..-|...|+|. .+|.- - -+ ...|...+.+.-+.|+.|.+++++..+-
T Consensus 124 ~~~~~~l~~~a~~RGlPl-~lPl~Dl~D~~~v~~~dvwg~f~~~i~~AS~RY~ad~vl~~~~~~~ 187 (234)
T PF09839_consen 124 SWLRAALRQAAQRRGLPL-VLPLMDLDDQMAVSVSDVWGGFPEPIAAASQRYGADAVLVVRAYRQ 187 (234)
T ss_pred HHHHHHHHHHHHHCCCCE-EECCCCHHHHHCCCHHHHHCCCHHHHHHHHHCCCCCCEEEEEEEEC
T ss_conf 789999999998679876-5248645666328899985367799999986039982999999986
No 42
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad . This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins , . PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis . The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies , .; GO: 0004219 pyroglutamyl-peptidase I activity, 0006508 proteolysis; PDB: 1aug_D 3giu_A 1z8x_C 1z8w_C 1z8t_D 2df5_D 1x12_C 1iof_C 1ioi_C 2eo8_C ....
Probab=20.18 E-value=20 Score=13.57 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=8.5
Q ss_pred HHHHHHHHHCCCCEEEEEC
Q ss_conf 9999999952898999713
Q T0626 152 AEVSRLVGHHQADVVVLAR 170 (283)
Q Consensus 152 ~~l~~~l~~~~~DlivLAg 170 (283)
+.+.+++++++||+++.-|
T Consensus 50 ~~l~~~i~~~~Pd~vihlG 68 (202)
T PF01470_consen 50 EALEEAIEEHKPDLVIHLG 68 (202)
T ss_dssp HHHHHHHHHH--SEEEE--
T ss_pred HHHHHHHHHHCCCEEEEEC
T ss_conf 9999999986999999925
Done!