Query T0629 long tail fibre protein gp37, bacteriophage T4, 216 residues
Match_columns 216
No_of_seqs 122 out of 393
Neff 9.6
Searched_HMMs 22458
Date Thu Jul 22 14:58:36 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0629.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0629.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pdi_A Short tail fiber protei 100.0 1.3E-38 5.9E-43 237.8 8.7 75 1-75 90-173 (278)
2 1ocy_A Bacteriophage T4 short 100.0 1.9E-37 8.3E-42 231.2 7.4 69 1-69 10-87 (198)
3 2fl8_A Baseplate structural pr 97.9 7.9E-06 3.5E-10 51.6 4.4 40 2-59 453-493 (602)
4 2fkk_A Baseplate structural pr 97.8 6.2E-06 2.8E-10 52.2 2.0 41 2-59 57-97 (206)
5 3boe_A Cadmium-specific carbon 40.1 8.6 0.00038 17.3 1.4 11 15-25 33-44 (210)
6 1m5s_A Formylmethanofuran--tet 26.6 11 0.0005 16.6 0.2 12 44-55 141-152 (297)
7 1atx_A ATX IA; SEA anemone tox 22.4 31 0.0014 14.1 1.7 18 6-26 20-37 (46)
8 1m5h_A Formylmethanofuran--tet 21.7 11 0.00047 16.7 -0.7 12 44-55 141-152 (297)
9 1ahl_A Anthopleurin-A, AP-A; n 19.0 35 0.0016 13.8 1.5 21 5-26 19-39 (49)
10 1ftr_A FTR, formylmethanofuran 11.1 48 0.0021 13.0 0.4 39 6-50 195-233 (296)
No 1
>1pdi_A Short tail fiber protein; structural protein; 12.00A {Enterobacteria phage T4} SCOP: i.19.1.1
Probab=100.00 E-value=1.3e-38 Score=237.76 Aligned_cols=75 Identities=27% Similarity=0.524 Sum_probs=65.3
Q ss_pred CCCCCCCEEECCCCCCC-CCEEEECCCEECHHHHHHHHHHCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98887613507778788-871863781226332057886607--------777775456510006745444443233443
Q T0629 1 SSYPIGAPIPWPSDSVP-AGFALMEGQTFDKSAYPKLAVAYP--------SGVIPDMRGQTIKGKPSGRAVLSAEADGVK 71 (216)
Q Consensus 1 ~~~PvG~iv~f~~~~~P-~Gwl~cdG~~~s~~~Yp~L~~~~g--------s~~lPdlrg~f~rG~~~g~~~~~~~~~~~~ 71 (216)
..+|||+|+||+++++| .|||+||||+|++++||+||++|| +|+||||||||+|||+++++++..+.....
T Consensus 90 ~~~PvG~Ii~w~g~~~Pp~GWl~CdG~~~s~~~Yp~L~~~iG~~yg~~~ttf~lPDlrGrfi~G~~~g~g~~~~~~~~~~ 169 (278)
T 1pdi_A 90 RTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGSHLTNPNVNGND 169 (278)
T ss_pred CCCCCCEEEECCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 57877627755688788430101589425831649999975744577775301554365466314788875565424655
Q ss_pred CCCC
Q ss_conf 2111
Q T0629 72 AHSH 75 (216)
Q Consensus 72 ~~~~ 75 (216)
+...
T Consensus 170 ~~~~ 173 (278)
T 1pdi_A 170 QFGK 173 (278)
T ss_pred CCCC
T ss_conf 6665
No 2
>1ocy_A Bacteriophage T4 short tail fibre; structural protein, fibrous protein, LIPO-polysaccharide binding, bacteriophage structural protein; HET: CIT; 1.5A {Bacteriophage T4} SCOP: d.231.1.1
Probab=100.00 E-value=1.9e-37 Score=231.24 Aligned_cols=69 Identities=29% Similarity=0.574 Sum_probs=61.4
Q ss_pred CCCCCCCEEECCCCCCC-CCEEEECCCEECHHHHHHHHHHCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98887613507778788-871863781226332057886607--------7777754565100067454444432334
Q T0629 1 SSYPIGAPIPWPSDSVP-AGFALMEGQTFDKSAYPKLAVAYP--------SGVIPDMRGQTIKGKPSGRAVLSAEADG 69 (216)
Q Consensus 1 ~~~PvG~iv~f~~~~~P-~Gwl~cdG~~~s~~~Yp~L~~~~g--------s~~lPdlrg~f~rG~~~g~~~~~~~~~~ 69 (216)
+++|||+|+||+++++| +|||+|||++|+|++||+||++|| +|+||||||||+||++++++++......
T Consensus 10 ~~vPiG~I~~~~g~~~pp~Gwl~CDG~~~s~~~Yp~L~a~iG~~yG~~~ttf~lPdlrgrf~~G~~~~~~~~~~~~~~ 87 (198)
T 1ocy_A 10 RTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGSHLTNPNVNG 87 (198)
T ss_dssp HHSCTTCEEEESSSSCSSTTEEESBSCBCCTTTCHHHHHHTTTTTSBCSSSBBCCBCTTCCCCCSSCCHHHHCGGGSS
T ss_pred CCCCCEEEEECCCCCCCCCCCEECCCEECCHHHCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 469952788722888998655733996567324999999757456666663356653662784268888755554356
No 3
>2fl8_A Baseplate structural protein GP10; bacteriophage T4, tail, evolution, structural comparisons, virus/viral protein complex; 1.20A {Enterobacteria phage T4} PDB: 2fl9_A
Probab=97.91 E-value=7.9e-06 Score=51.56 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=29.7
Q ss_pred CCCCCCEEECCCC-CCCCCEEEECCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8887613507778-788871863781226332057886607777775456510006745
Q T0629 2 SYPIGAPIPWPSD-SVPAGFALMEGQTFDKSAYPKLAVAYPSGVIPDMRGQTIKGKPSG 59 (216)
Q Consensus 2 ~~PvG~iv~f~~~-~~P~Gwl~cdG~~~s~~~Yp~L~~~~gs~~lPdlrg~f~rG~~~g 59 (216)
-||||+|.+++++ +.|+-+ +|.| +|.|- ..||||+|++..
T Consensus 453 IYPVGSIYiTS~NstNPsT~-fGfG-TW~ri----------------aeGRvLVGvds~ 493 (602)
T 2fl8_A 453 IYPIGTIYENAVNPNNPVTY-MGFG-SWKLF----------------GQGKVLVGWNED 493 (602)
T ss_pred HCCCEEEEEECCCCCCCCCC-CCCC-EEEEE----------------CCCCEEEECCCC
T ss_conf 58874899806689991113-5786-79890----------------288588842578
No 4
>2fkk_A Baseplate structural protein GP10; bacteriophage T4, tail, evolution, structural comparisons, viral protein; HET: EDO; 1.20A {Enterobacteria phage T4}
Probab=97.78 E-value=6.2e-06 Score=52.16 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=29.9
Q ss_pred CCCCCCEEECCCCCCCCCEEEECCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8887613507778788871863781226332057886607777775456510006745
Q T0629 2 SYPIGAPIPWPSDSVPAGFALMEGQTFDKSAYPKLAVAYPSGVIPDMRGQTIKGKPSG 59 (216)
Q Consensus 2 ~~PvG~iv~f~~~~~P~Gwl~cdG~~~s~~~Yp~L~~~~gs~~lPdlrg~f~rG~~~g 59 (216)
-||||.|.+++.+...+..|+|.| +|.|- -.||+|+|++..
T Consensus 57 iYPVGsIY~ts~nstNP~t~~G~G-tW~~~----------------~~Gr~lvG~~~~ 97 (206)
T 2fkk_A 57 IYPIGTIYENAVNPNNPVTYMGFG-SWKLF----------------GQGKVLVGWNED 97 (206)
T ss_dssp HSCTTCEEEESSCCSCTHHHHSCC-CEEEC----------------STTCCCCCCCSC
T ss_pred CCCCEEEEEECCCCCCCCCCCCCC-EEEEE----------------CCCEEEEECCCC
T ss_conf 276528998376788942104786-78892----------------484288750577
No 5
>3boe_A Cadmium-specific carbonic anhydrase; marine diatom, cadmium-bound, acetate ligand, oxidoreductase; 1.40A {Thalassiosira weissflogii} SCOP: c.154.1.1 PDB: 3boc_A 3bob_A 3boj_A 3boh_A
Probab=40.11 E-value=8.6 Score=17.27 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=8.3
Q ss_pred CCCCCEEEE-CC
Q ss_conf 788871863-78
Q T0629 15 SVPAGFALM-EG 25 (216)
Q Consensus 15 ~~P~Gwl~c-dG 25 (216)
.-|+|+||| ||
T Consensus 33 V~p~G~lKCVDG 44 (210)
T 3boe_A 33 VRPEGILKCVDG 44 (210)
T ss_dssp CCTTSEEBCCCC
T ss_pred CCCCCEEEECCC
T ss_conf 087643885147
No 6
>1m5s_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 1.85A {Methanosarcina barkeri} SCOP: d.58.33.1 d.58.33.1
Probab=26.61 E-value=11 Score=16.60 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCC
Q ss_conf 777545651000
Q T0629 44 VIPDMRGQTIKG 55 (216)
Q Consensus 44 ~lPdlrg~f~rG 55 (216)
++|=|-|||+.-
T Consensus 141 rIPVMdGEFl~E 152 (297)
T 1m5s_A 141 KVPIMEGDFLAE 152 (297)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCCCEEEE
T ss_conf 942446647988
No 7
>1atx_A ATX IA; SEA anemone toxin; NMR {Anemonia sulcata} SCOP: g.9.1.1
Probab=22.41 E-value=31 Score=14.13 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=12.0
Q ss_pred CCEEECCCCCCCCCEEEECCC
Q ss_conf 613507778788871863781
Q T0629 6 GAPIPWPSDSVPAGFALMEGQ 26 (216)
Q Consensus 6 G~iv~f~~~~~P~Gwl~cdG~ 26 (216)
|+|-+| .-|.||-+|.+.
T Consensus 20 Gtvw~~---~CpsGWh~C~~~ 37 (46)
T 1atx_A 20 GTIWVF---GCPSGWNNCEGR 37 (46)
T ss_dssp EEEESS---CCCTTCEEECCS
T ss_pred EEEEEC---CCCCCHHHCCCC
T ss_conf 457605---787403230464
No 8
>1m5h_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.33.1 d.58.33.1
Probab=21.73 E-value=11 Score=16.74 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCC
Q ss_conf 777545651000
Q T0629 44 VIPDMRGQTIKG 55 (216)
Q Consensus 44 ~lPdlrg~f~rG 55 (216)
++|=|-|||+.-
T Consensus 141 rIPVMdGEFl~E 152 (297)
T 1m5h_A 141 AVPMMEGDFIIE 152 (297)
T ss_dssp EEECSSSEEEEE
T ss_pred EEEECCCCEEEE
T ss_conf 953446637988
No 9
>1ahl_A Anthopleurin-A, AP-A; neurotoxin, cardiac stimulant; NMR {Anthopleura xanthogrammica} SCOP: g.9.1.1 PDB: 1apf_A
Probab=18.95 E-value=35 Score=13.76 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=13.1
Q ss_pred CCCEEECCCCCCCCCEEEECCC
Q ss_conf 7613507778788871863781
Q T0629 5 IGAPIPWPSDSVPAGFALMEGQ 26 (216)
Q Consensus 5 vG~iv~f~~~~~P~Gwl~cdG~ 26 (216)
-|+|-+|+ ..-|.||-+|.+.
T Consensus 19 sGtvW~~~-~gCpsGWh~C~~~ 39 (49)
T 1ahl_A 19 SGTLWLYP-SGCPSGWHNCKAH 39 (49)
T ss_dssp CSEEECST-TSSCTTCCCCCSS
T ss_pred CEEEEECC-CCCCCHHHHHHCC
T ss_conf 23788457-8886225664044
No 10
>1ftr_A FTR, formylmethanofuran\:tetrahydromethanopterin formyltransferase; methanogenesis, archae, acyltransferase, hyperthermophilic, halophilic; 1.70A {Methanopyrus kandleri} SCOP: d.58.33.1 d.58.33.1 PDB: 2fhj_A* 2fhk_A*
Probab=11.14 E-value=48 Score=13.01 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=0.0
Q ss_pred CCEEECCCCCCCCCEEEECCCEECHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 613507778788871863781226332057886607777775456
Q T0629 6 GAPIPWPSDSVPAGFALMEGQTFDKSAYPKLAVAYPSGVIPDMRG 50 (216)
Q Consensus 6 G~iv~f~~~~~P~Gwl~cdG~~~s~~~Yp~L~~~~gs~~lPdlrg 50 (216)
|+|.|||+-.+..| +.+....|+.|.+.----.-|-||+
T Consensus 195 gvI~PFPGGIvrSG------SKVGSk~Yk~l~ASTN~~yCPtLr~ 233 (296)
T 1ftr_A 195 GAYAPFPGGIVASA------SKVGSKQYDFLPASTNDAYCPTVED 233 (296)
T ss_dssp TEECCSGGGCBSSC------EEESCSSCTTCSEEECGGGCTTSTT
T ss_pred CEEECCCCCEECCC------CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 85744899700467------7567655676667656554866536
Done!