Query         T0629 long tail fibre protein gp37, bacteriophage T4, 216 residues
Match_columns 216
No_of_seqs    122 out of 393
Neff          9.6 
Searched_HMMs 15564
Date          Thu Jul 22 15:00:06 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0629.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0629.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1ocya_ d.231.1.1 (A:) Recepto 100.0 2.3E-41 1.4E-45  252.5   8.0  175    2-215    11-196 (198)
  2 d1pdia_ i.19.1.1 (A:) Bacterio 100.0 1.1E-39 6.7E-44  243.1   6.7   67    1-67     90-165 (278)
  3 d1ocya_ d.231.1.1 (A:) Recepto 100.0   5E-37 3.2E-41  227.9   7.4   69    1-69     10-87  (198)
  4 g1h6w.2 d.231.1.1 (A:328-396,B  99.7 1.2E-18 7.6E-23  123.5   4.1   51    2-52     13-72  (79)
  5 d3boea1 c.154.1.1 (A:224-432)   40.0       6 0.00038   17.3   1.4   11   15-25     32-43  (209)
  6 d1m5sa2 d.58.33.1 (A:146-297)   36.4     4.2 0.00027   18.1   0.2   42    5-52     46-87  (152)
  7 d1m5ha2 d.58.33.1 (A:146-297)   29.7     4.3 0.00027   18.1  -0.7   40    5-50     46-85  (152)
  8 d1atxa_ g.9.1.1 (A:) Sea anemo  25.4      17  0.0011   14.7   1.7   18    6-26     20-37  (46)
  9 d1ahla_ g.9.1.1 (A:) Anthopleu  19.9      23  0.0015   14.0   1.5   21    5-26     19-39  (49)
 10 d1el6a_ d.182.1.1 (A:) Basepla   9.1      55  0.0035   11.8   1.8   29    1-29     52-85  (208)

No 1  
>d1ocya_ d.231.1.1 (A:) Receptor-binding domain of short tail fibre protein gp12 {Bacteriophage T4 [TaxId: 10665]} SCOP: d1h6w.2
Probab=100.00  E-value=2.3e-41  Score=252.49  Aligned_cols=175  Identities=23%  Similarity=0.335  Sum_probs=99.3

Q ss_pred             CCCCCCEEECCCCCCC-CCEEEECCCEECHHHHHHHHHHCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8887613507778788-871863781226332057886607--------7777754565100067454444432334432
Q T0629             2 SYPIGAPIPWPSDSVP-AGFALMEGQTFDKSAYPKLAVAYP--------SGVIPDMRGQTIKGKPSGRAVLSAEADGVKA   72 (216)
Q Consensus         2 ~~PvG~iv~f~~~~~P-~Gwl~cdG~~~s~~~Yp~L~~~~g--------s~~lPdlrg~f~rG~~~g~~~~~~~~~~~~~   72 (216)
                      ++|||+||||+++++| +|||+|||++|++++||+||++||        +|+||||||||+|||+++++++.........
T Consensus        11 ~iPvG~Ii~~~g~~aPp~GwllCDGs~~s~~~Yp~Lf~~iGt~yGg~gstf~lPDLRGrfi~G~~~~~~~~~~~~~~~~~   90 (198)
T d1ocya_          11 TIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGSHLTNPNVNGNDQ   90 (198)
T ss_dssp             HSCTTCEEEESSSSCSSTTEEESBSCBCCTTTCHHHHHHTTTTTSBCSSSBBCCBCTTCCCCCSSCCHHHHCGGGSSBCT
T ss_pred             CCCCCEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf             38836466357776776770566471115445588998816567888760015655461575158788665541366534


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             111000034557752124433452000355652123256554443324434666653--355433455542212465334
Q T0629            73 HSHSASASSTDLGTKTTSSFDYGTKGTNSTGGHTHSGSGSTSTNGEHSHYIEAWNGT--GVGGNKMSSYAISYRAGGSNT  150 (216)
Q Consensus        73 ~~~~~~~~~~~~g~~t~~~~~~~~~~t~~~g~h~h~~~~~~~~~G~h~h~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t  150 (216)
                      .....                   ......+.|.  ++.+.+....|.|........  .....................
T Consensus        91 ~~~~~-------------------~~~~~~~~~~--~t~~~~~~~~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (198)
T d1ocya_          91 FGKPR-------------------LGVGCTGGYV--GEVQKQQMSYHKHAGGFGEYDDSGAFGNTRRSNFVGTRKGLDWD  149 (198)
T ss_dssp             TSCBC-------------------TTTTCCCCST--TCCCCCCCCCCCCCCSCCCSSSCCTTCCCCSSSCCCCSSCCCSC
T ss_pred             CCCCC-------------------CCCCCCCCCC--EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             33321-------------------1144566642--12330124543213455677676544666544423566655566


Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf             66666430121001566764331223555442334655430221167887664367665668861
Q T0629           151 NAAGNHSHTFSFGTSSAGDHSHSVGIGAHTHTVAIGSHGHTITVNSTGNTENTVKNIAFNYIVRL  215 (216)
Q Consensus       151 ~~~G~h~h~~s~~t~~~g~H~H~v~i~~~~~~~~~g~h~h~it~~~~G~~etrP~nia~~~~ik~  215 (216)
                      ...+...+....                  .....+.|.|+++....++.||||+||||+||||+
T Consensus       150 ~~~~~~~~~~~~------------------~~~~~~~h~~t~s~~~~~~~e~rP~~~al~yIIKv  196 (198)
T d1ocya_         150 NRSYFTNDGYEI------------------DPASQRNSRYTLNRPELIGNETRPWNISLNYIIKV  196 (198)
T ss_dssp             CCCCCCCCSSCS------------------SCGGGCCGGGCCSSTTCSSSCCCCSCCCCEEEEEC
T ss_pred             CCCCCCCCCCCC------------------CCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEE
T ss_conf             665425777421------------------46777631001024777555556706789998885


No 2  
>d1pdia_ i.19.1.1 (A:) Bacteriophage T4 3D cryo-EM reconstruction {Bacteriophage T4 [TaxId: 10665]}
Probab=100.00  E-value=1.1e-39  Score=243.10  Aligned_cols=67  Identities=28%  Similarity=0.551  Sum_probs=60.9

Q ss_pred             CCCCCCCEEECCCCCCC-CCEEEECCCEECHHHHHHHHHHCCC--------CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98887613507778788-8718637812263320578866077--------7777545651000674544444323
Q T0629             1 SSYPIGAPIPWPSDSVP-AGFALMEGQTFDKSAYPKLAVAYPS--------GVIPDMRGQTIKGKPSGRAVLSAEA   67 (216)
Q Consensus         1 ~~~PvG~iv~f~~~~~P-~Gwl~cdG~~~s~~~Yp~L~~~~gs--------~~lPdlrg~f~rG~~~g~~~~~~~~   67 (216)
                      .++|||+|+||++.++| .|||+|||++|++++||+||++||+        |+||||||||||||+++++++..+.
T Consensus        90 ~~~P~G~i~~~~~~~~p~~gw~~c~G~~~~~~~yp~L~~~iG~~~gg~~~~f~lPDlRgrfirG~~~g~g~~~~~~  165 (278)
T d1pdia_          90 RTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGSHLTNPNV  165 (278)
T ss_pred             CCCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf             3464142342466547743102332721042332788987231115776544588754554541576774557755


No 3  
>d1ocya_ d.231.1.1 (A:) Receptor-binding domain of short tail fibre protein gp12 {Bacteriophage T4 [TaxId: 10665]}
Probab=100.00  E-value=5e-37  Score=227.90  Aligned_cols=69  Identities=29%  Similarity=0.574  Sum_probs=61.3

Q ss_pred             CCCCCCCEEECCCCCCC-CCEEEECCCEECHHHHHHHHHHCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98887613507778788-871863781226332057886607--------7777754565100067454444432334
Q T0629             1 SSYPIGAPIPWPSDSVP-AGFALMEGQTFDKSAYPKLAVAYP--------SGVIPDMRGQTIKGKPSGRAVLSAEADG   69 (216)
Q Consensus         1 ~~~PvG~iv~f~~~~~P-~Gwl~cdG~~~s~~~Yp~L~~~~g--------s~~lPdlrg~f~rG~~~g~~~~~~~~~~   69 (216)
                      +++|||+|+||+++++| .|||+|||+++++++||+||++||        +|+||||||||+||++.+++++......
T Consensus        10 ~~vPvG~I~~~~g~~~pp~Gwl~CdG~~~~~~~yp~L~~~iG~~yG~~~~tf~lPdlrgrf~~G~~~~~~~~~~~~~~   87 (198)
T d1ocya_          10 RTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGSHLTNPNVNG   87 (198)
T ss_dssp             HHSCTTCEEEESSSSCSSTTEEESBSCBCCTTTCHHHHHHTTTTTSBCSSSBBCCBCTTCCCCCSSCCHHHHCGGGSS
T ss_pred             CCCCCEEEEEEECCCCCCCCCEECCCEECCHHHCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf             578862788800887998664752998567435899999756355566663356542662786338988755554356


No 4  
>g1h6w.2 d.231.1.1 (A:328-396,B:518-527) Receptor-binding domain of short tail fibre protein gp12 {Bacteriophage T4 [TaxId: 10665]}
Probab=99.72  E-value=1.2e-18  Score=123.52  Aligned_cols=51  Identities=31%  Similarity=0.574  Sum_probs=45.9

Q ss_pred             CCCCCCEEECCCCCCC-CCEEEECCCEECHHHHHHHHHHCC--------CCCCCCCCCCC
Q ss_conf             8887613507778788-871863781226332057886607--------77777545651
Q T0629             2 SYPIGAPIPWPSDSVP-AGFALMEGQTFDKSAYPKLAVAYP--------SGVIPDMRGQT   52 (216)
Q Consensus         2 ~~PvG~iv~f~~~~~P-~Gwl~cdG~~~s~~~Yp~L~~~~g--------s~~lPdlrg~f   52 (216)
                      +.|||+|+||++++.| .|||+|||+++++++||+||++||        +|+||||||.-
T Consensus        13 ~vPiG~I~~~ag~~~pp~GWl~CdG~~l~~~~Yp~Lf~~IGt~YGg~g~tF~lPDlRG~~   72 (79)
T g1h6w.2          13 TIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRSLN   72 (79)
T ss_dssp             HSCTTCEEEECSSSCSCTTEEESBSCBCCTTTCHHHHHHHTTTTSBCSSSBBCCBCCCCE
T ss_pred             CCCCCEEEEEECCCCCCCCCEEECCEECCHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCE
T ss_conf             799717888206768986838638966787689999998476658888852587777855


No 5  
>d3boea1 c.154.1.1 (A:224-432) Cadmium-specific carbonic anhydrase CdCA1 {Thalassiosira weissflogii [TaxId: 67004]}
Probab=40.04  E-value=6  Score=17.26  Aligned_cols=11  Identities=27%  Similarity=0.525  Sum_probs=8.3

Q ss_pred             CCCCCEEEE-CC
Q ss_conf             788871863-78
Q T0629            15 SVPAGFALM-EG   25 (216)
Q Consensus        15 ~~P~Gwl~c-dG   25 (216)
                      .-|+|+||| ||
T Consensus        32 V~p~G~lKCVDG   43 (209)
T d3boea1          32 VRPEGILKCVDG   43 (209)
T ss_dssp             CCTTSEEBCCCC
T ss_pred             CCCCCEEEECCC
T ss_conf             087643885147


No 6  
>d1m5sa2 d.58.33.1 (A:146-297) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=36.44  E-value=4.2  Score=18.11  Aligned_cols=42  Identities=19%  Similarity=0.362  Sum_probs=25.3

Q ss_pred             CCCEEECCCCCCCCCEEEECCCEECHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             761350777878887186378122633205788660777777545651
Q T0629             5 IGAPIPWPSDSVPAGFALMEGQTFDKSAYPKLAVAYPSGVIPDMRGQT   52 (216)
Q Consensus         5 vG~iv~f~~~~~P~Gwl~cdG~~~s~~~Yp~L~~~~gs~~lPdlrg~f   52 (216)
                      .|+|.|||+-.+..|      +.+..+.|+.|.+.--.-.-|-||++.
T Consensus        46 ~gvI~PFPGGiVrSG------SKVGs~kYk~l~ASTNdayCPtLr~~v   87 (152)
T d1m5sa2          46 EGTITPFPGGIVASG------SKSGANKYKFLKATANERFCPSIKDKI   87 (152)
T ss_dssp             TTEECCSGGGCBSSC------CBSSCSSCTTCSCBCCGGGCGGGGGGC
T ss_pred             CCEEECCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCHHHCCC
T ss_conf             990531888610457------756733367665755666484000357


No 7  
>d1m5ha2 d.58.33.1 (A:146-297) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.67  E-value=4.3  Score=18.08  Aligned_cols=40  Identities=23%  Similarity=0.418  Sum_probs=23.1

Q ss_pred             CCCEEECCCCCCCCCEEEECCCEECHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             7613507778788871863781226332057886607777775456
Q T0629             5 IGAPIPWPSDSVPAGFALMEGQTFDKSAYPKLAVAYPSGVIPDMRG   50 (216)
Q Consensus         5 vG~iv~f~~~~~P~Gwl~cdG~~~s~~~Yp~L~~~~gs~~lPdlrg   50 (216)
                      .|+|.|||+-.+..|      +.+..+.|+.|.+.--.-.-|-||+
T Consensus        46 ~gvI~PFPGGivrSG------SKVGsskYk~l~ASTN~ayCPtLr~   85 (152)
T d1m5ha2          46 EGVITPFPGGIVASG------SKVGANKYKFLKASTNEKFAPSIRD   85 (152)
T ss_dssp             TTEECCSGGGCBSSC------CBSSCSSCTTCSCBCCGGGCGGGHH
T ss_pred             CCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             994025887500457------7567333677657646463843125


No 8  
>d1atxa_ g.9.1.1 (A:) Sea anemone toxin IA {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=25.39  E-value=17  Score=14.65  Aligned_cols=18  Identities=28%  Similarity=0.582  Sum_probs=12.3

Q ss_pred             CCEEECCCCCCCCCEEEECCC
Q ss_conf             613507778788871863781
Q T0629             6 GAPIPWPSDSVPAGFALMEGQ   26 (216)
Q Consensus         6 G~iv~f~~~~~P~Gwl~cdG~   26 (216)
                      |+|-+|   .-|.||-+|.+.
T Consensus        20 Gtvw~~---gCpsGWh~C~~~   37 (46)
T d1atxa_          20 GTIWVF---GCPSGWNNCEGR   37 (46)
T ss_dssp             EEEESS---CCCTTCEEECCS
T ss_pred             EEEEEC---CCCCHHHHCCCC
T ss_conf             457844---586404330464


No 9  
>d1ahla_ g.9.1.1 (A:) Anthopleurin-A {Giant green sea anemone (Anthopleura xanthogrammica) [TaxId: 6112]}
Probab=19.94  E-value=23  Score=13.96  Aligned_cols=21  Identities=19%  Similarity=0.457  Sum_probs=14.2

Q ss_pred             CCCEEECCCCCCCCCEEEECCC
Q ss_conf             7613507778788871863781
Q T0629             5 IGAPIPWPSDSVPAGFALMEGQ   26 (216)
Q Consensus         5 vG~iv~f~~~~~P~Gwl~cdG~   26 (216)
                      -|+|-+|+ ..-|.||-+|.+.
T Consensus        19 sGtvW~~~-~gCpsGWh~C~~~   39 (49)
T d1ahla_          19 SGTLWLYP-SGCPSGWHNCKAH   39 (49)
T ss_dssp             CSEEECST-TSSCTTCCCCCSS
T ss_pred             CEEEEECC-CCCCCHHHHHCCC
T ss_conf             34788546-8896215564254


No 10 
>d1el6a_ d.182.1.1 (A:) Baseplate structural protein gp11 {Bacteriophage T4 [TaxId: 10665]}
Probab=9.09  E-value=55  Score=11.78  Aligned_cols=29  Identities=24%  Similarity=0.349  Sum_probs=22.4

Q ss_pred             CCCCCCCEEECCCCCCCCC-----EEEECCCEEC
Q ss_conf             9888761350777878887-----1863781226
Q T0629             1 SSYPIGAPIPWPSDSVPAG-----FALMEGQTFD   29 (216)
Q Consensus         1 ~~~PvG~iv~f~~~~~P~G-----wl~cdG~~~s   29 (216)
                      +.+|||.|+.--..++|.|     +|-++|..-+
T Consensus        52 s~~pVg~Vii~t~~~~P~g~~Q~e~ltFsGtVt~   85 (208)
T d1el6a_          52 SIKDVGTIITNKTGVSPEGVSQTDYWAFSGTVTD   85 (208)
T ss_dssp             HCCCTTBEEEESSCCCSCCBCCEEEEEEEEBCCC
T ss_pred             HHCCCCCEEEECCCCCCCCCCCEEEEEEEEEECC
T ss_conf             5076130998547789765231369998768647


Done!