Query T0629 long tail fibre protein gp37, bacteriophage T4, 216 residues
Match_columns 216
No_of_seqs 122 out of 393
Neff 9.6
Searched_HMMs 15564
Date Thu Jul 22 15:00:06 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0629.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0629.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ocya_ d.231.1.1 (A:) Recepto 100.0 2.3E-41 1.4E-45 252.5 8.0 175 2-215 11-196 (198)
2 d1pdia_ i.19.1.1 (A:) Bacterio 100.0 1.1E-39 6.7E-44 243.1 6.7 67 1-67 90-165 (278)
3 d1ocya_ d.231.1.1 (A:) Recepto 100.0 5E-37 3.2E-41 227.9 7.4 69 1-69 10-87 (198)
4 g1h6w.2 d.231.1.1 (A:328-396,B 99.7 1.2E-18 7.6E-23 123.5 4.1 51 2-52 13-72 (79)
5 d3boea1 c.154.1.1 (A:224-432) 40.0 6 0.00038 17.3 1.4 11 15-25 32-43 (209)
6 d1m5sa2 d.58.33.1 (A:146-297) 36.4 4.2 0.00027 18.1 0.2 42 5-52 46-87 (152)
7 d1m5ha2 d.58.33.1 (A:146-297) 29.7 4.3 0.00027 18.1 -0.7 40 5-50 46-85 (152)
8 d1atxa_ g.9.1.1 (A:) Sea anemo 25.4 17 0.0011 14.7 1.7 18 6-26 20-37 (46)
9 d1ahla_ g.9.1.1 (A:) Anthopleu 19.9 23 0.0015 14.0 1.5 21 5-26 19-39 (49)
10 d1el6a_ d.182.1.1 (A:) Basepla 9.1 55 0.0035 11.8 1.8 29 1-29 52-85 (208)
No 1
>d1ocya_ d.231.1.1 (A:) Receptor-binding domain of short tail fibre protein gp12 {Bacteriophage T4 [TaxId: 10665]} SCOP: d1h6w.2
Probab=100.00 E-value=2.3e-41 Score=252.49 Aligned_cols=175 Identities=23% Similarity=0.335 Sum_probs=99.3
Q ss_pred CCCCCCEEECCCCCCC-CCEEEECCCEECHHHHHHHHHHCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8887613507778788-871863781226332057886607--------7777754565100067454444432334432
Q T0629 2 SYPIGAPIPWPSDSVP-AGFALMEGQTFDKSAYPKLAVAYP--------SGVIPDMRGQTIKGKPSGRAVLSAEADGVKA 72 (216)
Q Consensus 2 ~~PvG~iv~f~~~~~P-~Gwl~cdG~~~s~~~Yp~L~~~~g--------s~~lPdlrg~f~rG~~~g~~~~~~~~~~~~~ 72 (216)
++|||+||||+++++| +|||+|||++|++++||+||++|| +|+||||||||+|||+++++++.........
T Consensus 11 ~iPvG~Ii~~~g~~aPp~GwllCDGs~~s~~~Yp~Lf~~iGt~yGg~gstf~lPDLRGrfi~G~~~~~~~~~~~~~~~~~ 90 (198)
T d1ocya_ 11 TIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGSHLTNPNVNGNDQ 90 (198)
T ss_dssp HSCTTCEEEESSSSCSSTTEEESBSCBCCTTTCHHHHHHTTTTTSBCSSSBBCCBCTTCCCCCSSCCHHHHCGGGSSBCT
T ss_pred CCCCCEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 38836466357776776770566471115445588998816567888760015655461575158788665541366534
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 111000034557752124433452000355652123256554443324434666653--355433455542212465334
Q T0629 73 HSHSASASSTDLGTKTTSSFDYGTKGTNSTGGHTHSGSGSTSTNGEHSHYIEAWNGT--GVGGNKMSSYAISYRAGGSNT 150 (216)
Q Consensus 73 ~~~~~~~~~~~~g~~t~~~~~~~~~~t~~~g~h~h~~~~~~~~~G~h~h~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t 150 (216)
..... ......+.|. ++.+.+....|.|........ .....................
T Consensus 91 ~~~~~-------------------~~~~~~~~~~--~t~~~~~~~~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (198)
T d1ocya_ 91 FGKPR-------------------LGVGCTGGYV--GEVQKQQMSYHKHAGGFGEYDDSGAFGNTRRSNFVGTRKGLDWD 149 (198)
T ss_dssp TSCBC-------------------TTTTCCCCST--TCCCCCCCCCCCCCCSCCCSSSCCTTCCCCSSSCCCCSSCCCSC
T ss_pred CCCCC-------------------CCCCCCCCCC--EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 33321-------------------1144566642--12330124543213455677676544666544423566655566
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 66666430121001566764331223555442334655430221167887664367665668861
Q T0629 151 NAAGNHSHTFSFGTSSAGDHSHSVGIGAHTHTVAIGSHGHTITVNSTGNTENTVKNIAFNYIVRL 215 (216)
Q Consensus 151 ~~~G~h~h~~s~~t~~~g~H~H~v~i~~~~~~~~~g~h~h~it~~~~G~~etrP~nia~~~~ik~ 215 (216)
...+...+.... .....+.|.|+++....++.||||+||||+||||+
T Consensus 150 ~~~~~~~~~~~~------------------~~~~~~~h~~t~s~~~~~~~e~rP~~~al~yIIKv 196 (198)
T d1ocya_ 150 NRSYFTNDGYEI------------------DPASQRNSRYTLNRPELIGNETRPWNISLNYIIKV 196 (198)
T ss_dssp CCCCCCCCSSCS------------------SCGGGCCGGGCCSSTTCSSSCCCCSCCCCEEEEEC
T ss_pred CCCCCCCCCCCC------------------CCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEE
T ss_conf 665425777421------------------46777631001024777555556706789998885
No 2
>d1pdia_ i.19.1.1 (A:) Bacteriophage T4 3D cryo-EM reconstruction {Bacteriophage T4 [TaxId: 10665]}
Probab=100.00 E-value=1.1e-39 Score=243.10 Aligned_cols=67 Identities=28% Similarity=0.551 Sum_probs=60.9
Q ss_pred CCCCCCCEEECCCCCCC-CCEEEECCCEECHHHHHHHHHHCCC--------CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98887613507778788-8718637812263320578866077--------7777545651000674544444323
Q T0629 1 SSYPIGAPIPWPSDSVP-AGFALMEGQTFDKSAYPKLAVAYPS--------GVIPDMRGQTIKGKPSGRAVLSAEA 67 (216)
Q Consensus 1 ~~~PvG~iv~f~~~~~P-~Gwl~cdG~~~s~~~Yp~L~~~~gs--------~~lPdlrg~f~rG~~~g~~~~~~~~ 67 (216)
.++|||+|+||++.++| .|||+|||++|++++||+||++||+ |+||||||||||||+++++++..+.
T Consensus 90 ~~~P~G~i~~~~~~~~p~~gw~~c~G~~~~~~~yp~L~~~iG~~~gg~~~~f~lPDlRgrfirG~~~g~g~~~~~~ 165 (278)
T d1pdia_ 90 RTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGSHLTNPNV 165 (278)
T ss_pred CCCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 3464142342466547743102332721042332788987231115776544588754554541576774557755
No 3
>d1ocya_ d.231.1.1 (A:) Receptor-binding domain of short tail fibre protein gp12 {Bacteriophage T4 [TaxId: 10665]}
Probab=100.00 E-value=5e-37 Score=227.90 Aligned_cols=69 Identities=29% Similarity=0.574 Sum_probs=61.3
Q ss_pred CCCCCCCEEECCCCCCC-CCEEEECCCEECHHHHHHHHHHCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98887613507778788-871863781226332057886607--------7777754565100067454444432334
Q T0629 1 SSYPIGAPIPWPSDSVP-AGFALMEGQTFDKSAYPKLAVAYP--------SGVIPDMRGQTIKGKPSGRAVLSAEADG 69 (216)
Q Consensus 1 ~~~PvG~iv~f~~~~~P-~Gwl~cdG~~~s~~~Yp~L~~~~g--------s~~lPdlrg~f~rG~~~g~~~~~~~~~~ 69 (216)
+++|||+|+||+++++| .|||+|||+++++++||+||++|| +|+||||||||+||++.+++++......
T Consensus 10 ~~vPvG~I~~~~g~~~pp~Gwl~CdG~~~~~~~yp~L~~~iG~~yG~~~~tf~lPdlrgrf~~G~~~~~~~~~~~~~~ 87 (198)
T d1ocya_ 10 RTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGSHLTNPNVNG 87 (198)
T ss_dssp HHSCTTCEEEESSSSCSSTTEEESBSCBCCTTTCHHHHHHTTTTTSBCSSSBBCCBCTTCCCCCSSCCHHHHCGGGSS
T ss_pred CCCCCEEEEEEECCCCCCCCCEECCCEECCHHHCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 578862788800887998664752998567435899999756355566663356542662786338988755554356
No 4
>g1h6w.2 d.231.1.1 (A:328-396,B:518-527) Receptor-binding domain of short tail fibre protein gp12 {Bacteriophage T4 [TaxId: 10665]}
Probab=99.72 E-value=1.2e-18 Score=123.52 Aligned_cols=51 Identities=31% Similarity=0.574 Sum_probs=45.9
Q ss_pred CCCCCCEEECCCCCCC-CCEEEECCCEECHHHHHHHHHHCC--------CCCCCCCCCCC
Q ss_conf 8887613507778788-871863781226332057886607--------77777545651
Q T0629 2 SYPIGAPIPWPSDSVP-AGFALMEGQTFDKSAYPKLAVAYP--------SGVIPDMRGQT 52 (216)
Q Consensus 2 ~~PvG~iv~f~~~~~P-~Gwl~cdG~~~s~~~Yp~L~~~~g--------s~~lPdlrg~f 52 (216)
+.|||+|+||++++.| .|||+|||+++++++||+||++|| +|+||||||.-
T Consensus 13 ~vPiG~I~~~ag~~~pp~GWl~CdG~~l~~~~Yp~Lf~~IGt~YGg~g~tF~lPDlRG~~ 72 (79)
T g1h6w.2 13 TIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRSLN 72 (79)
T ss_dssp HSCTTCEEEECSSSCSCTTEEESBSCBCCTTTCHHHHHHHTTTTSBCSSSBBCCBCCCCE
T ss_pred CCCCCEEEEEECCCCCCCCCEEECCEECCHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCE
T ss_conf 799717888206768986838638966787689999998476658888852587777855
No 5
>d3boea1 c.154.1.1 (A:224-432) Cadmium-specific carbonic anhydrase CdCA1 {Thalassiosira weissflogii [TaxId: 67004]}
Probab=40.04 E-value=6 Score=17.26 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=8.3
Q ss_pred CCCCCEEEE-CC
Q ss_conf 788871863-78
Q T0629 15 SVPAGFALM-EG 25 (216)
Q Consensus 15 ~~P~Gwl~c-dG 25 (216)
.-|+|+||| ||
T Consensus 32 V~p~G~lKCVDG 43 (209)
T d3boea1 32 VRPEGILKCVDG 43 (209)
T ss_dssp CCTTSEEBCCCC
T ss_pred CCCCCEEEECCC
T ss_conf 087643885147
No 6
>d1m5sa2 d.58.33.1 (A:146-297) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=36.44 E-value=4.2 Score=18.11 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=25.3
Q ss_pred CCCEEECCCCCCCCCEEEECCCEECHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 761350777878887186378122633205788660777777545651
Q T0629 5 IGAPIPWPSDSVPAGFALMEGQTFDKSAYPKLAVAYPSGVIPDMRGQT 52 (216)
Q Consensus 5 vG~iv~f~~~~~P~Gwl~cdG~~~s~~~Yp~L~~~~gs~~lPdlrg~f 52 (216)
.|+|.|||+-.+..| +.+..+.|+.|.+.--.-.-|-||++.
T Consensus 46 ~gvI~PFPGGiVrSG------SKVGs~kYk~l~ASTNdayCPtLr~~v 87 (152)
T d1m5sa2 46 EGTITPFPGGIVASG------SKSGANKYKFLKATANERFCPSIKDKI 87 (152)
T ss_dssp TTEECCSGGGCBSSC------CBSSCSSCTTCSCBCCGGGCGGGGGGC
T ss_pred CCEEECCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCHHHCCC
T ss_conf 990531888610457------756733367665755666484000357
No 7
>d1m5ha2 d.58.33.1 (A:146-297) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.67 E-value=4.3 Score=18.08 Aligned_cols=40 Identities=23% Similarity=0.418 Sum_probs=23.1
Q ss_pred CCCEEECCCCCCCCCEEEECCCEECHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7613507778788871863781226332057886607777775456
Q T0629 5 IGAPIPWPSDSVPAGFALMEGQTFDKSAYPKLAVAYPSGVIPDMRG 50 (216)
Q Consensus 5 vG~iv~f~~~~~P~Gwl~cdG~~~s~~~Yp~L~~~~gs~~lPdlrg 50 (216)
.|+|.|||+-.+..| +.+..+.|+.|.+.--.-.-|-||+
T Consensus 46 ~gvI~PFPGGivrSG------SKVGsskYk~l~ASTN~ayCPtLr~ 85 (152)
T d1m5ha2 46 EGVITPFPGGIVASG------SKVGANKYKFLKASTNEKFAPSIRD 85 (152)
T ss_dssp TTEECCSGGGCBSSC------CBSSCSSCTTCSCBCCGGGCGGGHH
T ss_pred CCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 994025887500457------7567333677657646463843125
No 8
>d1atxa_ g.9.1.1 (A:) Sea anemone toxin IA {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=25.39 E-value=17 Score=14.65 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=12.3
Q ss_pred CCEEECCCCCCCCCEEEECCC
Q ss_conf 613507778788871863781
Q T0629 6 GAPIPWPSDSVPAGFALMEGQ 26 (216)
Q Consensus 6 G~iv~f~~~~~P~Gwl~cdG~ 26 (216)
|+|-+| .-|.||-+|.+.
T Consensus 20 Gtvw~~---gCpsGWh~C~~~ 37 (46)
T d1atxa_ 20 GTIWVF---GCPSGWNNCEGR 37 (46)
T ss_dssp EEEESS---CCCTTCEEECCS
T ss_pred EEEEEC---CCCCHHHHCCCC
T ss_conf 457844---586404330464
No 9
>d1ahla_ g.9.1.1 (A:) Anthopleurin-A {Giant green sea anemone (Anthopleura xanthogrammica) [TaxId: 6112]}
Probab=19.94 E-value=23 Score=13.96 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=14.2
Q ss_pred CCCEEECCCCCCCCCEEEECCC
Q ss_conf 7613507778788871863781
Q T0629 5 IGAPIPWPSDSVPAGFALMEGQ 26 (216)
Q Consensus 5 vG~iv~f~~~~~P~Gwl~cdG~ 26 (216)
-|+|-+|+ ..-|.||-+|.+.
T Consensus 19 sGtvW~~~-~gCpsGWh~C~~~ 39 (49)
T d1ahla_ 19 SGTLWLYP-SGCPSGWHNCKAH 39 (49)
T ss_dssp CSEEECST-TSSCTTCCCCCSS
T ss_pred CEEEEECC-CCCCCHHHHHCCC
T ss_conf 34788546-8896215564254
No 10
>d1el6a_ d.182.1.1 (A:) Baseplate structural protein gp11 {Bacteriophage T4 [TaxId: 10665]}
Probab=9.09 E-value=55 Score=11.78 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCCCCCCEEECCCCCCCCC-----EEEECCCEEC
Q ss_conf 9888761350777878887-----1863781226
Q T0629 1 SSYPIGAPIPWPSDSVPAG-----FALMEGQTFD 29 (216)
Q Consensus 1 ~~~PvG~iv~f~~~~~P~G-----wl~cdG~~~s 29 (216)
+.+|||.|+.--..++|.| +|-++|..-+
T Consensus 52 s~~pVg~Vii~t~~~~P~g~~Q~e~ltFsGtVt~ 85 (208)
T d1el6a_ 52 SIKDVGTIITNKTGVSPEGVSQTDYWAFSGTVTD 85 (208)
T ss_dssp HCCCTTBEEEESSCCCSCCBCCEEEEEEEEBCCC
T ss_pred HHCCCCCEEEECCCCCCCCCCCEEEEEEEEEECC
T ss_conf 5076130998547789765231369998768647
Done!