Query         T0630 NP_001128980.1, , 132 residues
Match_columns 132
No_of_seqs    106 out of 428
Neff          7.3 
Searched_HMMs 22458
Date          Thu Jul 22 14:57:48 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0630.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0630.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3h41_A NLP/P60 family protein;  98.0 9.1E-06 4.1E-10   54.8   6.0   35    3-37    245-283 (311)
  2 3gt2_A Putative uncharacterize  98.0 3.3E-06 1.5E-10   57.5   3.3   34    3-36     85-118 (142)
  3 2jyx_A Lipoprotein SPR; soluti  97.7 4.6E-05   2E-09   50.4   4.9   36    3-38     63-99  (136)
  4 2hbw_A NLP/P60 protein; YP_323  97.6 0.00013 5.7E-09   47.7   6.0   37    3-39    156-193 (235)
  5 3kw0_A Cysteine peptidase; str  96.7  0.0023   1E-07   39.9   5.8   83    6-108    38-148 (214)
  6 2if6_A Hypothetical protein YI  96.7 0.00085 3.8E-08   42.6   3.2   96    5-120     2-119 (186)
  7 3ebq_A Molecule: pppde1 (permu  93.8   0.044   2E-06   32.0   3.7   35   87-121    81-118 (170)
  8 1vrb_A Putative asparaginyl hy  88.6    0.37 1.6E-05   26.3   3.9   29    7-36    221-249 (342)
  9 3m1u_A Putative gamma-D-glutam  80.2       1 4.5E-05   23.6   3.0   35   85-121   273-311 (434)
 10 2jrn_A CHAP domain protein; mo  70.9     2.8 0.00013   20.9   3.2   27    6-32     92-121 (163)
 11 2im9_A Hypothetical protein; s  70.7     1.5 6.8E-05   22.5   1.8   51    6-70    239-301 (333)
 12 1o9y_A HRCQ2; secretory protei  62.2     6.2 0.00028   18.8   3.6   28    6-33     34-61  (84)
 13 2p1g_A Putative xylanase; stru  58.5     8.1 0.00036   18.0   3.7   35    4-38    168-206 (249)
 14 2io8_A Bifunctional glutathion  56.3     9.6 0.00043   17.6   3.7   31    3-33    107-143 (619)
 15 1o6a_A Putative flagelar motor  55.5     7.1 0.00032   18.4   3.0   30    6-35     38-67  (96)
 16 3k2o_A Bifunctional arginine d  55.2      10 0.00046   17.4   3.7   22    8-30    260-281 (336)
 17 3d8c_A Hypoxia-inducible facto  54.7     6.5 0.00029   18.6   2.6   23    7-30    264-286 (349)
 18 2vob_A Trypanothione synthetas  54.5      10 0.00047   17.3   4.0   31    3-33    107-142 (652)
 19 1vr3_A Acireductone dioxygenas  43.2      16  0.0007   16.3   3.1   26    7-33    130-155 (191)
 20 1zrr_A E-2/E-2' protein; nicke  42.7     7.1 0.00032   18.4   1.3   15    7-21    125-139 (179)
 21 2kij_A Copper-transporting ATP  31.2      12 0.00052   17.1   0.9   18    3-20     37-54  (124)
 22 2hc8_A PACS, cation-transporti  29.7      15 0.00066   16.4   1.2   19    2-20     24-42  (113)
 23 2i45_A Hypothetical protein; n  24.2      33  0.0015   14.3   3.7   13    8-20     71-83  (107)
 24 3l42_A Peregrin; transcription  22.8      29  0.0013   14.7   1.6   21    6-26      4-24  (130)
 25 1am2_A MXE GYRA intein; protei  22.7      26  0.0012   14.9   1.4   13    3-15     17-29  (199)
 26 3gjz_A Microcin immunity prote  20.1      39  0.0018   13.8   2.0   15    1-16      4-18  (336)

No 1  
>3h41_A NLP/P60 family protein; NP_979181.1, NLPC/P60 family protein, structural genomics, joint center for structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}
Probab=98.00  E-value=9.1e-06  Score=54.76  Aligned_cols=35  Identities=31%  Similarity=0.499  Sum_probs=30.2

Q ss_pred             CCCCCCCCCCEEEEE----CCCEEEEEEEECCCEEEEEE
Q ss_conf             881005778679872----69755899987791799852
Q T0630             3 APIPEPKPGDLIEIF----RPFYRHWAIYVGDGYVVHLA   37 (132)
Q Consensus         3 ~~~~~~k~GDlI~~~----r~~y~H~GIYvGdg~ViH~~   37 (132)
                      .+..+++|||||.|.    ++...|.|||+|++++||-.
T Consensus       245 ~~~~~~~~GDl~ff~~~~~~~~~~HVgi~~g~~~~iHa~  283 (311)
T 3h41_A          245 VDKEHLQKGDLIFFAHDQGKGSVHHVAMYIGDGNMIHSP  283 (311)
T ss_dssp             ECGGGCCTTCEEEEEHHHHTSCEEEEEEEEETTEEEECC
T ss_pred             CCHHCCCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEC
T ss_conf             123008998889981788899975999997699799979


No 2  
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=97.97  E-value=3.3e-06  Score=57.50  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=29.7

Q ss_pred             CCCCCCCCCCEEEEECCCEEEEEEEECCCEEEEE
Q ss_conf             8810057786798726975589998779179985
Q T0630             3 APIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHL   36 (132)
Q Consensus         3 ~~~~~~k~GDlI~~~r~~y~H~GIYvGdg~ViH~   36 (132)
                      .+..+++|||||.|......|.|||+|+|++||-
T Consensus        85 v~~~~~~pGDLvff~~~~~~HVgiyiG~g~~iha  118 (142)
T 3gt2_A           85 ILPQQARKGDLIFYGPEGTQSVAMYLGNNQMLEV  118 (142)
T ss_dssp             ECGGGCCTTCEEEESGGGCSEEEEEEETTEEEEE
T ss_pred             CCCCCCCCCEEEEECCCCCCEEEEEECCCEEEEC
T ss_conf             3435799984999569999889999679979978


No 3  
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=97.65  E-value=4.6e-05  Score=50.43  Aligned_cols=36  Identities=28%  Similarity=0.416  Sum_probs=30.0

Q ss_pred             CCCCCCCCCCEEEEECCC-EEEEEEEECCCEEEEEEC
Q ss_conf             881005778679872697-558999877917998526
Q T0630             3 APIPEPKPGDLIEIFRPF-YRHWAIYVGDGYVVHLAP   38 (132)
Q Consensus         3 ~~~~~~k~GDlI~~~r~~-y~H~GIYvGdg~ViH~~~   38 (132)
                      .+..+++|||||.|..+. ..|.|||+|++++||-..
T Consensus        63 v~~~~~~pGDlvff~~~~~~~HVgIylg~g~~Iha~~   99 (136)
T 2jyx_A           63 VSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHAST   99 (136)
T ss_dssp             CCTTTCCTTEEEEEECSSSSEEEEEEEETTEEEEEET
T ss_pred             EEECCCCCCCEEEECCCCCCCEEEEEECCCEEEEECC
T ss_conf             8455689998999798999818999977995999799


No 4  
>2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: UNL; 1.05A {Anabaena variabilis atcc 29413} PDB: 2evr_A 2fg0_A
Probab=97.55  E-value=0.00013  Score=47.68  Aligned_cols=37  Identities=35%  Similarity=0.556  Sum_probs=30.4

Q ss_pred             CCCCCCCCCCEEEEECC-CEEEEEEEECCCEEEEEECC
Q ss_conf             88100577867987269-75589998779179985267
Q T0630             3 APIPEPKPGDLIEIFRP-FYRHWAIYVGDGYVVHLAPP   39 (132)
Q Consensus         3 ~~~~~~k~GDlI~~~r~-~y~H~GIYvGdg~ViH~~~~   39 (132)
                      .+..+++|||||.+... ...|.|||+|++++||-.++
T Consensus       156 v~~~~~~pGDLiFf~~~~~~~HVgIyig~~~~Iha~~~  193 (235)
T 2hbw_A          156 ITIDELAPGDLVFFGTPVKATHVGLYLGDGCYIHSSGK  193 (235)
T ss_dssp             ECGGGCCTTCEEEEECSSCEEEEEEEEETTEEEEEECT
T ss_pred             CCHHHCCCCCEEEECCCCCCCEEEEEECCCEEEEECCC
T ss_conf             88567276777887589999889999749979995998


No 5  
>3kw0_A Cysteine peptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, plasmid; HET: LYS; 2.50A {Bacillus cereus atcc 10987}
Probab=96.75  E-value=0.0023  Score=39.92  Aligned_cols=83  Identities=14%  Similarity=0.054  Sum_probs=45.8

Q ss_pred             CCCCCCCEEEEEC-------------CCEEEEEEEECCCE---EEEEECCCCCCCCCCEEEEECCCCCCCEEEEEEEEEE
Q ss_conf             0057786798726-------------97558999877917---9985267664346611331002678525787723353
Q T0630             6 PEPKPGDLIEIFR-------------PFYRHWAIYVGDGY---VVHLAPPSEVAGAGAASVMSALTDKAIVKKELLYDVA   69 (132)
Q Consensus         6 ~~~k~GDlI~~~r-------------~~y~H~GIYvGdg~---ViH~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~   69 (132)
                      ..+|+||+|.+.-             .-|+|.||+++++.   |++-++.                  ..|...+|.++.
T Consensus        38 ~~LktGDIlL~~g~~~~S~lIr~~T~S~ySHvaivl~~~~~~~viEA~~~------------------~Gv~~~~l~~~~   99 (214)
T 3kw0_A           38 NVLKTGDIFLCSGNYLVSKLIKKVSESMFSHTGIIVKWGEHTLIMESVED------------------DGVRIVPLEHYI   99 (214)
T ss_dssp             TTCCTTCEEEEEECSHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETT------------------TEEEEEETHHHH
T ss_pred             HCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECC------------------CCCCEEEHHHHH
T ss_conf             54588678999679718899999859998569999963996399999678------------------886534488987


Q ss_pred             CCCC------------EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf             5882------------79843437653788989999999997068877204
Q T0630            70 GSDK------------YQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKL  108 (132)
Q Consensus        70 ~~~~------------~~v~n~~d~~~~~~~~~~iv~rA~~~lg~~~~Y~l  108 (132)
                      ....            .++.............+.+++.|...+|+  +|+.
T Consensus       100 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~a~~~lg~--pYd~  148 (214)
T 3kw0_A          100 KNYENSNNRYNGSLFIARHELLQNVNDDSEMIRNLIKVGFSLLNS--GYDK  148 (214)
T ss_dssp             HCGGGSSSCCSEEEEEEEEGGGTTSCTTSHHHHHHHHHHHHHCCS--CCCH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--CCCH
T ss_conf             664412111342147889887433335799999999999998268--8770


No 6  
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, protein structure initiative; 1.80A {Escherichia coli O157} SCOP: d.3.1.21
Probab=96.69  E-value=0.00085  Score=42.60  Aligned_cols=96  Identities=22%  Similarity=0.244  Sum_probs=47.4

Q ss_pred             CCCCCCCCEEEEEC-------------CCEEEEEEEECCCEEEEEECCCCCCCCCCEEEEECCCCCCCEEEEEEEEEEC-
Q ss_conf             10057786798726-------------9755899987791799852676643466113310026785257877233535-
Q T0630             5 IPEPKPGDLIEIFR-------------PFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIVKKELLYDVAG-   70 (132)
Q Consensus         5 ~~~~k~GDlI~~~r-------------~~y~H~GIYvGdg~ViH~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~-   70 (132)
                      .-+||+||+|.+..             ..|+|.||+++++.-+......                 ..+....+..+.. 
T Consensus         2 ~~q~~~GDIlf~~~~~~~s~aI~~~T~S~~sHvgIvv~~~~~~~v~~~~-----------------~~~~~~~l~~~~~~   64 (186)
T 2if6_A            2 LWQPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMLVMRNKKPYVFEAV-----------------GPVKYTPLKQWIAH   64 (186)
T ss_dssp             -CCCCTTCEEEECCCSTTHHHHHHHHTSSCCEEEEEEEETTEEEEEEES-----------------SSEEEEEHHHHHHT
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCEEEEECC-----------------CCCEEEECHHHHHC
T ss_conf             8889787889995798569999997389973699999659970575335-----------------57436643145430


Q ss_pred             --CCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEC------CHHHHHHHH
Q ss_conf             --88279843437653788989999999997068877204342------858999988
Q T0630            71 --SDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSE------NCEHFVNEL  120 (132)
Q Consensus        71 --~~~~~v~n~~d~~~~~~~~~~iv~rA~~~lg~~~~Y~l~~n------NCEHFa~~c  120 (132)
                        +..+.|.... ....+...+.+++.|++++|+  +||+.++      =|-.|+..+
T Consensus        65 ~~~~~~~v~R~~-~~~~~~~~~~~~~~a~~~lG~--pYd~~f~~~~~~~yCSelV~~a  119 (186)
T 2if6_A           65 GEKGKYVVRRVE-GGLSVEQQQKLAQTAKRYLGK--PYDFSFSWSDDRQYCSEVVWKV  119 (186)
T ss_dssp             SGGGCEEEEEET-TCCCHHHHHHHHHHHGGGTTC--CBCTTCCSSSSSBCHHHHHHHH
T ss_pred             CCCCCEEEEEEC-CCCCHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHH
T ss_conf             567537999735-889999999999999997599--7786445665434336999999


No 7  
>3ebq_A Molecule: pppde1 (permuted papain fold peptidases of dsRNA viruses and eukaryotes...; structural genomics, structural genomics consortium; 1.90A {Homo sapiens}
Probab=93.81  E-value=0.044  Score=31.99  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=22.2

Q ss_pred             CCHHHHHHHHHHHCCCC---CCCEEEECCHHHHHHHHH
Q ss_conf             89899999999970688---772043428589999887
Q T0630            87 LPCSKIIQRAEELVGQE---VLYKLTSENCEHFVNELR  121 (132)
Q Consensus        87 ~~~~~iv~rA~~~lg~~---~~Y~l~~nNCEHFa~~cr  121 (132)
                      ++.+++.+-..++-.++   ..|||+.+||-||+..+.
T Consensus        81 ~s~~e~~~~l~~l~~~~f~g~~Y~Ll~~NCNhFs~~l~  118 (170)
T 3ebq_A           81 VTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVA  118 (170)
T ss_dssp             CCHHHHHHHHHHHHTTTCCGGGCBTTTBCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             78999999999975634578764402104432689999


No 8  
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=88.64  E-value=0.37  Score=26.35  Aligned_cols=29  Identities=14%  Similarity=0.276  Sum_probs=22.1

Q ss_pred             CCCCCCEEEEECCCEEEEEEEECCCEEEEE
Q ss_conf             057786798726975589998779179985
Q T0630             7 EPKPGDLIEIFRPFYRHWAIYVGDGYVVHL   36 (132)
Q Consensus         7 ~~k~GDlI~~~r~~y~H~GIYvGdg~ViH~   36 (132)
                      .++|||+|++|++.| |++.-.++.--+++
T Consensus       221 ~L~pGD~LYiP~gww-H~v~s~~~s~s~si  249 (342)
T 1vrb_A          221 NLTPGTMLYLPRGLW-HSTKSDQATLALNI  249 (342)
T ss_dssp             EECTTCEEEECTTCE-EEEECSSCEEEEEE
T ss_pred             EECCCCEEEECCCCC-EEEEECCCEEEEEE
T ss_conf             977987899789972-78786587079999


No 9  
>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopeptidase; structural genomics, joint center for structural genomics, JCSG; HET: MSE MES; 1.75A {Desulfovibrio vulgaris}
Probab=80.20  E-value=1  Score=23.61  Aligned_cols=35  Identities=23%  Similarity=0.490  Sum_probs=22.6

Q ss_pred             CCCCHHHHHHHHHHHCCCC----CCCEEEECCHHHHHHHHH
Q ss_conf             7889899999999970688----772043428589999887
Q T0630            85 SPLPCSKIIQRAEELVGQE----VLYKLTSENCEHFVNELR  121 (132)
Q Consensus        85 ~~~~~~~iv~rA~~~lg~~----~~Y~l~~nNCEHFa~~cr  121 (132)
                      .+...+.+++.|+++||..    +.+  ...-|=-|+..+-
T Consensus       273 l~~t~~ni~~~a~~~lg~pY~WGG~~--~g~DCSg~v~~~~  311 (434)
T 3m1u_A          273 VPLTPGNMAELGNRMMGQPYGWGGLY--EDRDCSSTLRDLF  311 (434)
T ss_dssp             CCCCHHHHHHHHHHHTTCBBCGGGGG--GCBCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCCCEECCCCC--CCCCCHHHHHHHH
T ss_conf             66898999999999749988608968--9978279999999


No 10 
>2jrn_A CHAP domain protein; monomer, putative amidase, structural genomics, PSI-2, protein structure initiative; NMR {Staphylococcus saprophyticus} PDB: 2k3a_A
Probab=70.86  E-value=2.8  Score=20.87  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=22.1

Q ss_pred             CCCCCCCEEEEECCCEEEEEEEE---CCCE
Q ss_conf             00577867987269755899987---7917
Q T0630             6 PEPKPGDLIEIFRPFYRHWAIYV---GDGY   32 (132)
Q Consensus         6 ~~~k~GDlI~~~r~~y~H~GIYv---Gdg~   32 (132)
                      ..|++||++.+..+.|-|.|+..   +||.
T Consensus        92 ~tP~~Gai~~~~~g~yGHVa~Ve~V~~dGs  121 (163)
T 2jrn_A           92 NSPEAGSILQSTAGGYGHVAYVENVNSDGS  121 (163)
T ss_dssp             SCCCTTEEEEECTTTTCEEEEEEECSSSSC
T ss_pred             CCCCCCEEEEECCCCCCCEEEEEEECCCCC
T ss_conf             978898899978999981799999878982


No 11 
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13
Probab=70.74  E-value=1.5  Score=22.51  Aligned_cols=51  Identities=22%  Similarity=0.245  Sum_probs=31.3

Q ss_pred             CCCCCCCEEEEECC-----------C-EEEEEEEECCCEEEEEECCCCCCCCCCEEEEECCCCCCCEEEEEEEEEEC
Q ss_conf             00577867987269-----------7-55899987791799852676643466113310026785257877233535
Q T0630             6 PEPKPGDLIEIFRP-----------F-YRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIVKKELLYDVAG   70 (132)
Q Consensus         6 ~~~k~GDlI~~~r~-----------~-y~H~GIYvGdg~ViH~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~   70 (132)
                      +.++.||+|.+-+.           + .+|.||.+-.+.-+||-..+              +....|...+|.++..
T Consensus       239 ~~L~~GDiI~I~t~~~~~~~~~~~GLDVSHvGi~i~~~~~l~lrhAS--------------S~~~KVVd~pL~~Yl~  301 (333)
T 2im9_A          239 SQIPNGAVIEIIRPNWDLRQQIGTELDISHLGFAIWINNELFFRQAS--------------SQYGKVVDVSLIDYLD  301 (333)
T ss_dssp             TTSCTTCEEEEEEEEECCHHHHSSCEEEEEEEEEEEETTEEEEEEEE--------------TTTTEEEEEEHHHHHH
T ss_pred             HCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCEEEEEECC--------------CCCCCEECCCHHHHHH
T ss_conf             30899888999916752102256798314368999979917999647--------------9999076866999997


No 12 
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=62.25  E-value=6.2  Score=18.76  Aligned_cols=28  Identities=18%  Similarity=0.217  Sum_probs=24.1

Q ss_pred             CCCCCCCEEEEECCCEEEEEEEECCCEE
Q ss_conf             0057786798726975589998779179
Q T0630             6 PEPKPGDLIEIFRPFYRHWAIYVGDGYV   33 (132)
Q Consensus         6 ~~~k~GDlI~~~r~~y~H~GIYvGdg~V   33 (132)
                      -++++||+|.+++....+.=||+++..+
T Consensus        34 l~L~~Gdvi~L~~~~~~~v~l~v~g~~i   61 (84)
T 1o9y_A           34 RRLDAGTILEVTGISPGHATLCHGEQVV   61 (84)
T ss_dssp             HTCCTTCEEEECSSCTTEEEEEETTEEE
T ss_pred             HCCCCCCEEEECCCCCCCEEEEECCEEE
T ss_conf             5189999999077789989999988999


No 13 
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46}
Probab=58.51  E-value=8.1  Score=18.03  Aligned_cols=35  Identities=26%  Similarity=0.207  Sum_probs=25.0

Q ss_pred             CCCCCCCCCEEEEECC----CEEEEEEEECCCEEEEEEC
Q ss_conf             8100577867987269----7558999877917998526
Q T0630             4 PIPEPKPGDLIEIFRP----FYRHWAIYVGDGYVVHLAP   38 (132)
Q Consensus         4 ~~~~~k~GDlI~~~r~----~y~H~GIYvGdg~ViH~~~   38 (132)
                      -...++.||+|.+-+.    -.+|.||.+-.+.-+||-.
T Consensus       168 ~~~~L~~GDiI~i~t~~~GLDVsHvGi~i~~~~~l~l~h  206 (249)
T 2p1g_A          168 GLPWIKNGDIIALTTNTPGLDVSHMGIAIYIKGQLHLLH  206 (249)
T ss_dssp             CCTTSCTTCEEEEEECSTTCSEEEEEEEEEETTEEEEEE
T ss_pred             HHHHCCCCCEEEEEECCCCCEEEEEEEEEEECCCEEEEE
T ss_conf             885578888899994589970676799997099469985


No 14 
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A
Probab=56.34  E-value=9.6  Score=17.58  Aligned_cols=31  Identities=23%  Similarity=0.119  Sum_probs=22.2

Q ss_pred             CCCCCCCCCCEEEEECC----CEEEEEEEE--CCCEE
Q ss_conf             88100577867987269----755899987--79179
Q T0630             3 APIPEPKPGDLIEIFRP----FYRHWAIYV--GDGYV   33 (132)
Q Consensus         3 ~~~~~~k~GDlI~~~r~----~y~H~GIYv--Gdg~V   33 (132)
                      .+...|++||||-.++.    -|-|.||.+  +++.|
T Consensus       107 g~~~~P~~gdllI~~~~~~~~p~GHVAVV~~V~~~~v  143 (619)
T 2io8_A          107 GSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKV  143 (619)
T ss_dssp             TCSSCCCTTCEEEECSBTTBTTTCEEEEEEEECSSEE
T ss_pred             CCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCEE
T ss_conf             9989998885899678988897754999999828879


No 15 
>1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=55.52  E-value=7.1  Score=18.38  Aligned_cols=30  Identities=20%  Similarity=0.143  Sum_probs=24.6

Q ss_pred             CCCCCCCEEEEECCCEEEEEEEECCCEEEE
Q ss_conf             005778679872697558999877917998
Q T0630             6 PEPKPGDLIEIFRPFYRHWAIYVGDGYVVH   35 (132)
Q Consensus         6 ~~~k~GDlI~~~r~~y~H~GIYvGdg~ViH   35 (132)
                      -++++||+|.++.....+.-||+++-.+.+
T Consensus        38 ~~L~~Gdvi~l~~~~~~~v~l~v~g~~~~~   67 (96)
T 1o6a_A           38 LEMIHGSIIELDKLTGEPVDILVNGKLIAR   67 (96)
T ss_dssp             HHCCTTCEEEEEEETTCCEEEEETTEEEEE
T ss_pred             HCCCCCCEEECCCCCCCCEEEEECCEEEEE
T ss_conf             458999999867979997899999999999


No 16 
>3k2o_A Bifunctional arginine demethylase and lysyl- hydroxylase JMJD6; structural genomics consortium, SGC, alternative splicing, chromatin regulator; 1.75A {Homo sapiens}
Probab=55.17  E-value=10  Score=17.42  Aligned_cols=22  Identities=18%  Similarity=0.440  Sum_probs=10.5

Q ss_pred             CCCCCEEEEECCCEEEEEEEECC
Q ss_conf             57786798726975589998779
Q T0630             8 PKPGDLIEIFRPFYRHWAIYVGD   30 (132)
Q Consensus         8 ~k~GDlI~~~r~~y~H~GIYvGd   30 (132)
                      ++|||+|++|.+.+ |+-.-+++
T Consensus       260 l~pGD~LfIP~gWw-H~V~nl~~  281 (336)
T 3k2o_A          260 QKPGETVFVPGGWW-HVVLNLDT  281 (336)
T ss_dssp             ECTTCEEEECTTCE-EEEEESSC
T ss_pred             ECCCCEEEECCCCE-EEEECCCC
T ss_conf             85786697079972-88875898


No 17 
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor 2-oxoglutarate, asparaginyl hydroxylase,; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 1mze_A* 1mzf_A* 1iz3_A
Probab=54.74  E-value=6.5  Score=18.65  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=15.4

Q ss_pred             CCCCCCEEEEECCCEEEEEEEECC
Q ss_conf             057786798726975589998779
Q T0630             7 EPKPGDLIEIFRPFYRHWAIYVGD   30 (132)
Q Consensus         7 ~~k~GDlI~~~r~~y~H~GIYvGd   30 (132)
                      .++|||+|++|.+.+ |+..-+++
T Consensus       264 ~l~pGd~LfiP~~w~-H~v~~l~~  286 (349)
T 3d8c_A          264 VVGPGDVLYIPMYWW-HHIESLLN  286 (349)
T ss_dssp             EECTTCEEEECTTCE-EEEEECTT
T ss_pred             EECCCCEEEECCCCC-EEEEECCC
T ss_conf             988998898689986-89998689


No 18 
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=54.50  E-value=10  Score=17.35  Aligned_cols=31  Identities=23%  Similarity=0.314  Sum_probs=22.1

Q ss_pred             CCCCCCCCCCEEEEECCC---EEEEEEEE--CCCEE
Q ss_conf             881005778679872697---55899987--79179
Q T0630             3 APIPEPKPGDLIEIFRPF---YRHWAIYV--GDGYV   33 (132)
Q Consensus         3 ~~~~~~k~GDlI~~~r~~---y~H~GIYv--Gdg~V   33 (132)
                      .+...|++||||-.++..   |=|.||.+  .++.|
T Consensus       107 G~~~~P~~gdLlI~~~~~~~p~GHVAVVt~V~~~~V  142 (652)
T 2vob_A          107 GTTTKPEADALLVYPSTDANPVGHVGTITEVGDDYV  142 (652)
T ss_dssp             SBSSCCCSSEEEEECCCSSCTTCEEEEEEEECSSEE
T ss_pred             CCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCCEE
T ss_conf             998999998189967999998756999999828848


No 19 
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=43.20  E-value=16  Score=16.26  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=14.8

Q ss_pred             CCCCCCEEEEECCCEEEEEEEECCCEE
Q ss_conf             057786798726975589998779179
Q T0630             7 EPKPGDLIEIFRPFYRHWAIYVGDGYV   33 (132)
Q Consensus         7 ~~k~GDlI~~~r~~y~H~GIYvGdg~V   33 (132)
                      +.++||+|.+|.+.| ||---..+++|
T Consensus       130 ~~~~GDlI~iPag~~-H~Ftl~~~~~i  155 (191)
T 1vr3_A          130 SMEKGDMITLPAGIY-HRFTLDEKNYV  155 (191)
T ss_dssp             EEETTEEEEECTTCC-EEEEECTTCCE
T ss_pred             EEECCCEEEECCCCC-EEEECCCCCCE
T ss_conf             992698999799983-74006898878


No 20 
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=42.66  E-value=7.1  Score=18.38  Aligned_cols=15  Identities=20%  Similarity=0.009  Sum_probs=9.4

Q ss_pred             CCCCCCEEEEECCCE
Q ss_conf             057786798726975
Q T0630             7 EPKPGDLIEIFRPFY   21 (132)
Q Consensus         7 ~~k~GDlI~~~r~~y   21 (132)
                      ..++||+|.+|-+.+
T Consensus       125 ~~~~GDlI~VPag~~  139 (179)
T 1zrr_A          125 LCEKNDLISVPAHTP  139 (179)
T ss_dssp             ECCCSCEEEECTTCC
T ss_pred             EECCCCEEEECCCCE
T ss_conf             974898899699986


No 21 
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=31.24  E-value=12  Score=17.06  Aligned_cols=18  Identities=17%  Similarity=0.239  Sum_probs=14.6

Q ss_pred             CCCCCCCCCCEEEEECCC
Q ss_conf             881005778679872697
Q T0630             3 APIPEPKPGDLIEIFRPF   20 (132)
Q Consensus         3 ~~~~~~k~GDlI~~~r~~   20 (132)
                      .|..++++||+|.+.-+-
T Consensus        37 V~~~~L~~GDii~v~~G~   54 (124)
T 2kij_A           37 VDVELVQRGDIIKVVPGG   54 (124)
T ss_dssp             EETTTCCTTCEEECCTTC
T ss_pred             EEHHHCCCCCEEEECCCC
T ss_conf             888998869999999999


No 22 
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=29.74  E-value=15  Score=16.42  Aligned_cols=19  Identities=21%  Similarity=0.305  Sum_probs=15.2

Q ss_pred             CCCCCCCCCCCEEEEECCC
Q ss_conf             8881005778679872697
Q T0630             2 RAPIPEPKPGDLIEIFRPF   20 (132)
Q Consensus         2 ~~~~~~~k~GDlI~~~r~~   20 (132)
                      +.|..+++|||+|.+.-+-
T Consensus        24 ~i~~~~l~~GDiv~v~~G~   42 (113)
T 2hc8_A           24 AVPVEEVAVGDIVIVRPGE   42 (113)
T ss_dssp             EEEGGGCCTTCEEEECTTC
T ss_pred             EEEHHHCCCCCEEEECCCC
T ss_conf             9998997689999989999


No 23 
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PSI-2, protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=24.17  E-value=33  Score=14.30  Aligned_cols=13  Identities=8%  Similarity=0.296  Sum_probs=5.4

Q ss_pred             CCCCCEEEEECCC
Q ss_conf             5778679872697
Q T0630             8 PKPGDLIEIFRPF   20 (132)
Q Consensus         8 ~k~GDlI~~~r~~   20 (132)
                      +++||.|.++++.
T Consensus        71 l~~Gd~i~ip~G~   83 (107)
T 2i45_A           71 IREGEMAVVPKSV   83 (107)
T ss_dssp             ECTTEEEEECTTC
T ss_pred             ECCCCEEEECCCC
T ss_conf             0499689908989


No 24 
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics consortium, SGC; 1.30A {Homo sapiens}
Probab=22.80  E-value=29  Score=14.65  Aligned_cols=21  Identities=14%  Similarity=-0.007  Sum_probs=17.6

Q ss_pred             CCCCCCCEEEEECCCEEEEEE
Q ss_conf             005778679872697558999
Q T0630             6 PEPKPGDLIEIFRPFYRHWAI   26 (132)
Q Consensus         6 ~~~k~GDlI~~~r~~y~H~GI   26 (132)
                      .+++||||+...-.+|-.|=-
T Consensus         4 ~~~~pgdlVWaK~~gyPwWPa   24 (130)
T 3l42_A            4 SPLDALDLVWAKCRGYPSYPA   24 (130)
T ss_dssp             SSSCTTCEEEECCTTSCCEEE
T ss_pred             CCCCCCCEEEEECCCCCCCCE
T ss_conf             878877689997898899997


No 25 
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2
Probab=22.69  E-value=26  Score=14.91  Aligned_cols=13  Identities=23%  Similarity=0.307  Sum_probs=9.2

Q ss_pred             CCCCCCCCCCEEE
Q ss_conf             8810057786798
Q T0630             3 APIPEPKPGDLIE   15 (132)
Q Consensus         3 ~~~~~~k~GDlI~   15 (132)
                      .|+.++.+||.+.
T Consensus        17 ~~I~dl~~g~~~~   29 (199)
T 1am2_A           17 VRIADIVPGARPN   29 (199)
T ss_dssp             EEGGGSSTTCCTT
T ss_pred             EEHHHHHCCCCCC
T ss_conf             8978823878840


No 26 
>3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str}
Probab=20.11  E-value=39  Score=13.79  Aligned_cols=15  Identities=47%  Similarity=0.543  Sum_probs=11.4

Q ss_pred             CCCCCCCCCCCCEEEE
Q ss_conf             9888100577867987
Q T0630             1 MRAPIPEPKPGDLIEI   16 (132)
Q Consensus         1 ~~~~~~~~k~GDlI~~   16 (132)
                      |..| +.||+||-|.+
T Consensus         4 m~~P-~~Lk~GD~I~v   18 (336)
T 3gjz_A            4 MPLP-KSLKYGDTIGI   18 (336)
T ss_dssp             CCCC-CCCCTTCEEEE
T ss_pred             CCCC-CCCCCCCEEEE
T ss_conf             9889-99888599999


Done!