Query T0630 NP_001128980.1, , 132 residues
Match_columns 132
No_of_seqs 106 out of 428
Neff 7.3
Searched_HMMs 22458
Date Thu Jul 22 14:57:48 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0630.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0630.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h41_A NLP/P60 family protein; 98.0 9.1E-06 4.1E-10 54.8 6.0 35 3-37 245-283 (311)
2 3gt2_A Putative uncharacterize 98.0 3.3E-06 1.5E-10 57.5 3.3 34 3-36 85-118 (142)
3 2jyx_A Lipoprotein SPR; soluti 97.7 4.6E-05 2E-09 50.4 4.9 36 3-38 63-99 (136)
4 2hbw_A NLP/P60 protein; YP_323 97.6 0.00013 5.7E-09 47.7 6.0 37 3-39 156-193 (235)
5 3kw0_A Cysteine peptidase; str 96.7 0.0023 1E-07 39.9 5.8 83 6-108 38-148 (214)
6 2if6_A Hypothetical protein YI 96.7 0.00085 3.8E-08 42.6 3.2 96 5-120 2-119 (186)
7 3ebq_A Molecule: pppde1 (permu 93.8 0.044 2E-06 32.0 3.7 35 87-121 81-118 (170)
8 1vrb_A Putative asparaginyl hy 88.6 0.37 1.6E-05 26.3 3.9 29 7-36 221-249 (342)
9 3m1u_A Putative gamma-D-glutam 80.2 1 4.5E-05 23.6 3.0 35 85-121 273-311 (434)
10 2jrn_A CHAP domain protein; mo 70.9 2.8 0.00013 20.9 3.2 27 6-32 92-121 (163)
11 2im9_A Hypothetical protein; s 70.7 1.5 6.8E-05 22.5 1.8 51 6-70 239-301 (333)
12 1o9y_A HRCQ2; secretory protei 62.2 6.2 0.00028 18.8 3.6 28 6-33 34-61 (84)
13 2p1g_A Putative xylanase; stru 58.5 8.1 0.00036 18.0 3.7 35 4-38 168-206 (249)
14 2io8_A Bifunctional glutathion 56.3 9.6 0.00043 17.6 3.7 31 3-33 107-143 (619)
15 1o6a_A Putative flagelar motor 55.5 7.1 0.00032 18.4 3.0 30 6-35 38-67 (96)
16 3k2o_A Bifunctional arginine d 55.2 10 0.00046 17.4 3.7 22 8-30 260-281 (336)
17 3d8c_A Hypoxia-inducible facto 54.7 6.5 0.00029 18.6 2.6 23 7-30 264-286 (349)
18 2vob_A Trypanothione synthetas 54.5 10 0.00047 17.3 4.0 31 3-33 107-142 (652)
19 1vr3_A Acireductone dioxygenas 43.2 16 0.0007 16.3 3.1 26 7-33 130-155 (191)
20 1zrr_A E-2/E-2' protein; nicke 42.7 7.1 0.00032 18.4 1.3 15 7-21 125-139 (179)
21 2kij_A Copper-transporting ATP 31.2 12 0.00052 17.1 0.9 18 3-20 37-54 (124)
22 2hc8_A PACS, cation-transporti 29.7 15 0.00066 16.4 1.2 19 2-20 24-42 (113)
23 2i45_A Hypothetical protein; n 24.2 33 0.0015 14.3 3.7 13 8-20 71-83 (107)
24 3l42_A Peregrin; transcription 22.8 29 0.0013 14.7 1.6 21 6-26 4-24 (130)
25 1am2_A MXE GYRA intein; protei 22.7 26 0.0012 14.9 1.4 13 3-15 17-29 (199)
26 3gjz_A Microcin immunity prote 20.1 39 0.0018 13.8 2.0 15 1-16 4-18 (336)
No 1
>3h41_A NLP/P60 family protein; NP_979181.1, NLPC/P60 family protein, structural genomics, joint center for structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}
Probab=98.00 E-value=9.1e-06 Score=54.76 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=30.2
Q ss_pred CCCCCCCCCCEEEEE----CCCEEEEEEEECCCEEEEEE
Q ss_conf 881005778679872----69755899987791799852
Q T0630 3 APIPEPKPGDLIEIF----RPFYRHWAIYVGDGYVVHLA 37 (132)
Q Consensus 3 ~~~~~~k~GDlI~~~----r~~y~H~GIYvGdg~ViH~~ 37 (132)
.+..+++|||||.|. ++...|.|||+|++++||-.
T Consensus 245 ~~~~~~~~GDl~ff~~~~~~~~~~HVgi~~g~~~~iHa~ 283 (311)
T 3h41_A 245 VDKEHLQKGDLIFFAHDQGKGSVHHVAMYIGDGNMIHSP 283 (311)
T ss_dssp ECGGGCCTTCEEEEEHHHHTSCEEEEEEEEETTEEEECC
T ss_pred CCHHCCCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEC
T ss_conf 123008998889981788899975999997699799979
No 2
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=97.97 E-value=3.3e-06 Score=57.50 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=29.7
Q ss_pred CCCCCCCCCCEEEEECCCEEEEEEEECCCEEEEE
Q ss_conf 8810057786798726975589998779179985
Q T0630 3 APIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHL 36 (132)
Q Consensus 3 ~~~~~~k~GDlI~~~r~~y~H~GIYvGdg~ViH~ 36 (132)
.+..+++|||||.|......|.|||+|+|++||-
T Consensus 85 v~~~~~~pGDLvff~~~~~~HVgiyiG~g~~iha 118 (142)
T 3gt2_A 85 ILPQQARKGDLIFYGPEGTQSVAMYLGNNQMLEV 118 (142)
T ss_dssp ECGGGCCTTCEEEESGGGCSEEEEEEETTEEEEE
T ss_pred CCCCCCCCCEEEEECCCCCCEEEEEECCCEEEEC
T ss_conf 3435799984999569999889999679979978
No 3
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=97.65 E-value=4.6e-05 Score=50.43 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=30.0
Q ss_pred CCCCCCCCCCEEEEECCC-EEEEEEEECCCEEEEEEC
Q ss_conf 881005778679872697-558999877917998526
Q T0630 3 APIPEPKPGDLIEIFRPF-YRHWAIYVGDGYVVHLAP 38 (132)
Q Consensus 3 ~~~~~~k~GDlI~~~r~~-y~H~GIYvGdg~ViH~~~ 38 (132)
.+..+++|||||.|..+. ..|.|||+|++++||-..
T Consensus 63 v~~~~~~pGDlvff~~~~~~~HVgIylg~g~~Iha~~ 99 (136)
T 2jyx_A 63 VSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHAST 99 (136)
T ss_dssp CCTTTCCTTEEEEEECSSSSEEEEEEEETTEEEEEET
T ss_pred EEECCCCCCCEEEECCCCCCCEEEEEECCCEEEEECC
T ss_conf 8455689998999798999818999977995999799
No 4
>2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: UNL; 1.05A {Anabaena variabilis atcc 29413} PDB: 2evr_A 2fg0_A
Probab=97.55 E-value=0.00013 Score=47.68 Aligned_cols=37 Identities=35% Similarity=0.556 Sum_probs=30.4
Q ss_pred CCCCCCCCCCEEEEECC-CEEEEEEEECCCEEEEEECC
Q ss_conf 88100577867987269-75589998779179985267
Q T0630 3 APIPEPKPGDLIEIFRP-FYRHWAIYVGDGYVVHLAPP 39 (132)
Q Consensus 3 ~~~~~~k~GDlI~~~r~-~y~H~GIYvGdg~ViH~~~~ 39 (132)
.+..+++|||||.+... ...|.|||+|++++||-.++
T Consensus 156 v~~~~~~pGDLiFf~~~~~~~HVgIyig~~~~Iha~~~ 193 (235)
T 2hbw_A 156 ITIDELAPGDLVFFGTPVKATHVGLYLGDGCYIHSSGK 193 (235)
T ss_dssp ECGGGCCTTCEEEEECSSCEEEEEEEEETTEEEEEECT
T ss_pred CCHHHCCCCCEEEECCCCCCCEEEEEECCCEEEEECCC
T ss_conf 88567276777887589999889999749979995998
No 5
>3kw0_A Cysteine peptidase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, plasmid; HET: LYS; 2.50A {Bacillus cereus atcc 10987}
Probab=96.75 E-value=0.0023 Score=39.92 Aligned_cols=83 Identities=14% Similarity=0.054 Sum_probs=45.8
Q ss_pred CCCCCCCEEEEEC-------------CCEEEEEEEECCCE---EEEEECCCCCCCCCCEEEEECCCCCCCEEEEEEEEEE
Q ss_conf 0057786798726-------------97558999877917---9985267664346611331002678525787723353
Q T0630 6 PEPKPGDLIEIFR-------------PFYRHWAIYVGDGY---VVHLAPPSEVAGAGAASVMSALTDKAIVKKELLYDVA 69 (132)
Q Consensus 6 ~~~k~GDlI~~~r-------------~~y~H~GIYvGdg~---ViH~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~ 69 (132)
..+|+||+|.+.- .-|+|.||+++++. |++-++. ..|...+|.++.
T Consensus 38 ~~LktGDIlL~~g~~~~S~lIr~~T~S~ySHvaivl~~~~~~~viEA~~~------------------~Gv~~~~l~~~~ 99 (214)
T 3kw0_A 38 NVLKTGDIFLCSGNYLVSKLIKKVSESMFSHTGIIVKWGEHTLIMESVED------------------DGVRIVPLEHYI 99 (214)
T ss_dssp TTCCTTCEEEEEECSHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETT------------------TEEEEEETHHHH
T ss_pred HCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECC------------------CCCCEEEHHHHH
T ss_conf 54588678999679718899999859998569999963996399999678------------------886534488987
Q ss_pred CCCC------------EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 5882------------79843437653788989999999997068877204
Q T0630 70 GSDK------------YQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKL 108 (132)
Q Consensus 70 ~~~~------------~~v~n~~d~~~~~~~~~~iv~rA~~~lg~~~~Y~l 108 (132)
.... .++.............+.+++.|...+|+ +|+.
T Consensus 100 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~a~~~lg~--pYd~ 148 (214)
T 3kw0_A 100 KNYENSNNRYNGSLFIARHELLQNVNDDSEMIRNLIKVGFSLLNS--GYDK 148 (214)
T ss_dssp HCGGGSSSCCSEEEEEEEEGGGTTSCTTSHHHHHHHHHHHHHCCS--CCCH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--CCCH
T ss_conf 664412111342147889887433335799999999999998268--8770
No 6
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, protein structure initiative; 1.80A {Escherichia coli O157} SCOP: d.3.1.21
Probab=96.69 E-value=0.00085 Score=42.60 Aligned_cols=96 Identities=22% Similarity=0.244 Sum_probs=47.4
Q ss_pred CCCCCCCCEEEEEC-------------CCEEEEEEEECCCEEEEEECCCCCCCCCCEEEEECCCCCCCEEEEEEEEEEC-
Q ss_conf 10057786798726-------------9755899987791799852676643466113310026785257877233535-
Q T0630 5 IPEPKPGDLIEIFR-------------PFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIVKKELLYDVAG- 70 (132)
Q Consensus 5 ~~~~k~GDlI~~~r-------------~~y~H~GIYvGdg~ViH~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~- 70 (132)
.-+||+||+|.+.. ..|+|.||+++++.-+...... ..+....+..+..
T Consensus 2 ~~q~~~GDIlf~~~~~~~s~aI~~~T~S~~sHvgIvv~~~~~~~v~~~~-----------------~~~~~~~l~~~~~~ 64 (186)
T 2if6_A 2 LWQPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMLVMRNKKPYVFEAV-----------------GPVKYTPLKQWIAH 64 (186)
T ss_dssp -CCCCTTCEEEECCCSTTHHHHHHHHTSSCCEEEEEEEETTEEEEEEES-----------------SSEEEEEHHHHHHT
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCEEEEECC-----------------CCCEEEECHHHHHC
T ss_conf 8889787889995798569999997389973699999659970575335-----------------57436643145430
Q ss_pred --CCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEC------CHHHHHHHH
Q ss_conf --88279843437653788989999999997068877204342------858999988
Q T0630 71 --SDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSE------NCEHFVNEL 120 (132)
Q Consensus 71 --~~~~~v~n~~d~~~~~~~~~~iv~rA~~~lg~~~~Y~l~~n------NCEHFa~~c 120 (132)
+..+.|.... ....+...+.+++.|++++|+ +||+.++ =|-.|+..+
T Consensus 65 ~~~~~~~v~R~~-~~~~~~~~~~~~~~a~~~lG~--pYd~~f~~~~~~~yCSelV~~a 119 (186)
T 2if6_A 65 GEKGKYVVRRVE-GGLSVEQQQKLAQTAKRYLGK--PYDFSFSWSDDRQYCSEVVWKV 119 (186)
T ss_dssp SGGGCEEEEEET-TCCCHHHHHHHHHHHGGGTTC--CBCTTCCSSSSSBCHHHHHHHH
T ss_pred CCCCCEEEEEEC-CCCCHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHH
T ss_conf 567537999735-889999999999999997599--7786445665434336999999
No 7
>3ebq_A Molecule: pppde1 (permuted papain fold peptidases of dsRNA viruses and eukaryotes...; structural genomics, structural genomics consortium; 1.90A {Homo sapiens}
Probab=93.81 E-value=0.044 Score=31.99 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHCCCC---CCCEEEECCHHHHHHHHH
Q ss_conf 89899999999970688---772043428589999887
Q T0630 87 LPCSKIIQRAEELVGQE---VLYKLTSENCEHFVNELR 121 (132)
Q Consensus 87 ~~~~~iv~rA~~~lg~~---~~Y~l~~nNCEHFa~~cr 121 (132)
++.+++.+-..++-.++ ..|||+.+||-||+..+.
T Consensus 81 ~s~~e~~~~l~~l~~~~f~g~~Y~Ll~~NCNhFs~~l~ 118 (170)
T 3ebq_A 81 VTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVA 118 (170)
T ss_dssp CCHHHHHHHHHHHHTTTCCGGGCBTTTBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 78999999999975634578764402104432689999
No 8
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=88.64 E-value=0.37 Score=26.35 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCCCCCEEEEECCCEEEEEEEECCCEEEEE
Q ss_conf 057786798726975589998779179985
Q T0630 7 EPKPGDLIEIFRPFYRHWAIYVGDGYVVHL 36 (132)
Q Consensus 7 ~~k~GDlI~~~r~~y~H~GIYvGdg~ViH~ 36 (132)
.++|||+|++|++.| |++.-.++.--+++
T Consensus 221 ~L~pGD~LYiP~gww-H~v~s~~~s~s~si 249 (342)
T 1vrb_A 221 NLTPGTMLYLPRGLW-HSTKSDQATLALNI 249 (342)
T ss_dssp EECTTCEEEECTTCE-EEEECSSCEEEEEE
T ss_pred EECCCCEEEECCCCC-EEEEECCCEEEEEE
T ss_conf 977987899789972-78786587079999
No 9
>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopeptidase; structural genomics, joint center for structural genomics, JCSG; HET: MSE MES; 1.75A {Desulfovibrio vulgaris}
Probab=80.20 E-value=1 Score=23.61 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHCCCC----CCCEEEECCHHHHHHHHH
Q ss_conf 7889899999999970688----772043428589999887
Q T0630 85 SPLPCSKIIQRAEELVGQE----VLYKLTSENCEHFVNELR 121 (132)
Q Consensus 85 ~~~~~~~iv~rA~~~lg~~----~~Y~l~~nNCEHFa~~cr 121 (132)
.+...+.+++.|+++||.. +.+ ...-|=-|+..+-
T Consensus 273 l~~t~~ni~~~a~~~lg~pY~WGG~~--~g~DCSg~v~~~~ 311 (434)
T 3m1u_A 273 VPLTPGNMAELGNRMMGQPYGWGGLY--EDRDCSSTLRDLF 311 (434)
T ss_dssp CCCCHHHHHHHHHHHTTCBBCGGGGG--GCBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCEECCCCC--CCCCCHHHHHHHH
T ss_conf 66898999999999749988608968--9978279999999
No 10
>2jrn_A CHAP domain protein; monomer, putative amidase, structural genomics, PSI-2, protein structure initiative; NMR {Staphylococcus saprophyticus} PDB: 2k3a_A
Probab=70.86 E-value=2.8 Score=20.87 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=22.1
Q ss_pred CCCCCCCEEEEECCCEEEEEEEE---CCCE
Q ss_conf 00577867987269755899987---7917
Q T0630 6 PEPKPGDLIEIFRPFYRHWAIYV---GDGY 32 (132)
Q Consensus 6 ~~~k~GDlI~~~r~~y~H~GIYv---Gdg~ 32 (132)
..|++||++.+..+.|-|.|+.. +||.
T Consensus 92 ~tP~~Gai~~~~~g~yGHVa~Ve~V~~dGs 121 (163)
T 2jrn_A 92 NSPEAGSILQSTAGGYGHVAYVENVNSDGS 121 (163)
T ss_dssp SCCCTTEEEEECTTTTCEEEEEEECSSSSC
T ss_pred CCCCCCEEEEECCCCCCCEEEEEEECCCCC
T ss_conf 978898899978999981799999878982
No 11
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13
Probab=70.74 E-value=1.5 Score=22.51 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=31.3
Q ss_pred CCCCCCCEEEEECC-----------C-EEEEEEEECCCEEEEEECCCCCCCCCCEEEEECCCCCCCEEEEEEEEEEC
Q ss_conf 00577867987269-----------7-55899987791799852676643466113310026785257877233535
Q T0630 6 PEPKPGDLIEIFRP-----------F-YRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIVKKELLYDVAG 70 (132)
Q Consensus 6 ~~~k~GDlI~~~r~-----------~-y~H~GIYvGdg~ViH~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~ 70 (132)
+.++.||+|.+-+. + .+|.||.+-.+.-+||-..+ +....|...+|.++..
T Consensus 239 ~~L~~GDiI~I~t~~~~~~~~~~~GLDVSHvGi~i~~~~~l~lrhAS--------------S~~~KVVd~pL~~Yl~ 301 (333)
T 2im9_A 239 SQIPNGAVIEIIRPNWDLRQQIGTELDISHLGFAIWINNELFFRQAS--------------SQYGKVVDVSLIDYLD 301 (333)
T ss_dssp TTSCTTCEEEEEEEEECCHHHHSSCEEEEEEEEEEEETTEEEEEEEE--------------TTTTEEEEEEHHHHHH
T ss_pred HCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCEEEEEECC--------------CCCCCEECCCHHHHHH
T ss_conf 30899888999916752102256798314368999979917999647--------------9999076866999997
No 12
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=62.25 E-value=6.2 Score=18.76 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.1
Q ss_pred CCCCCCCEEEEECCCEEEEEEEECCCEE
Q ss_conf 0057786798726975589998779179
Q T0630 6 PEPKPGDLIEIFRPFYRHWAIYVGDGYV 33 (132)
Q Consensus 6 ~~~k~GDlI~~~r~~y~H~GIYvGdg~V 33 (132)
-++++||+|.+++....+.=||+++..+
T Consensus 34 l~L~~Gdvi~L~~~~~~~v~l~v~g~~i 61 (84)
T 1o9y_A 34 RRLDAGTILEVTGISPGHATLCHGEQVV 61 (84)
T ss_dssp HTCCTTCEEEECSSCTTEEEEEETTEEE
T ss_pred HCCCCCCEEEECCCCCCCEEEEECCEEE
T ss_conf 5189999999077789989999988999
No 13
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46}
Probab=58.51 E-value=8.1 Score=18.03 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=25.0
Q ss_pred CCCCCCCCCEEEEECC----CEEEEEEEECCCEEEEEEC
Q ss_conf 8100577867987269----7558999877917998526
Q T0630 4 PIPEPKPGDLIEIFRP----FYRHWAIYVGDGYVVHLAP 38 (132)
Q Consensus 4 ~~~~~k~GDlI~~~r~----~y~H~GIYvGdg~ViH~~~ 38 (132)
-...++.||+|.+-+. -.+|.||.+-.+.-+||-.
T Consensus 168 ~~~~L~~GDiI~i~t~~~GLDVsHvGi~i~~~~~l~l~h 206 (249)
T 2p1g_A 168 GLPWIKNGDIIALTTNTPGLDVSHMGIAIYIKGQLHLLH 206 (249)
T ss_dssp CCTTSCTTCEEEEEECSTTCSEEEEEEEEEETTEEEEEE
T ss_pred HHHHCCCCCEEEEEECCCCCEEEEEEEEEEECCCEEEEE
T ss_conf 885578888899994589970676799997099469985
No 14
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A
Probab=56.34 E-value=9.6 Score=17.58 Aligned_cols=31 Identities=23% Similarity=0.119 Sum_probs=22.2
Q ss_pred CCCCCCCCCCEEEEECC----CEEEEEEEE--CCCEE
Q ss_conf 88100577867987269----755899987--79179
Q T0630 3 APIPEPKPGDLIEIFRP----FYRHWAIYV--GDGYV 33 (132)
Q Consensus 3 ~~~~~~k~GDlI~~~r~----~y~H~GIYv--Gdg~V 33 (132)
.+...|++||||-.++. -|-|.||.+ +++.|
T Consensus 107 g~~~~P~~gdllI~~~~~~~~p~GHVAVV~~V~~~~v 143 (619)
T 2io8_A 107 GSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKV 143 (619)
T ss_dssp TCSSCCCTTCEEEECSBTTBTTTCEEEEEEEECSSEE
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCEE
T ss_conf 9989998885899678988897754999999828879
No 15
>1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=55.52 E-value=7.1 Score=18.38 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=24.6
Q ss_pred CCCCCCCEEEEECCCEEEEEEEECCCEEEE
Q ss_conf 005778679872697558999877917998
Q T0630 6 PEPKPGDLIEIFRPFYRHWAIYVGDGYVVH 35 (132)
Q Consensus 6 ~~~k~GDlI~~~r~~y~H~GIYvGdg~ViH 35 (132)
-++++||+|.++.....+.-||+++-.+.+
T Consensus 38 ~~L~~Gdvi~l~~~~~~~v~l~v~g~~~~~ 67 (96)
T 1o6a_A 38 LEMIHGSIIELDKLTGEPVDILVNGKLIAR 67 (96)
T ss_dssp HHCCTTCEEEEEEETTCCEEEEETTEEEEE
T ss_pred HCCCCCCEEECCCCCCCCEEEEECCEEEEE
T ss_conf 458999999867979997899999999999
No 16
>3k2o_A Bifunctional arginine demethylase and lysyl- hydroxylase JMJD6; structural genomics consortium, SGC, alternative splicing, chromatin regulator; 1.75A {Homo sapiens}
Probab=55.17 E-value=10 Score=17.42 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=10.5
Q ss_pred CCCCCEEEEECCCEEEEEEEECC
Q ss_conf 57786798726975589998779
Q T0630 8 PKPGDLIEIFRPFYRHWAIYVGD 30 (132)
Q Consensus 8 ~k~GDlI~~~r~~y~H~GIYvGd 30 (132)
++|||+|++|.+.+ |+-.-+++
T Consensus 260 l~pGD~LfIP~gWw-H~V~nl~~ 281 (336)
T 3k2o_A 260 QKPGETVFVPGGWW-HVVLNLDT 281 (336)
T ss_dssp ECTTCEEEECTTCE-EEEEESSC
T ss_pred ECCCCEEEECCCCE-EEEECCCC
T ss_conf 85786697079972-88875898
No 17
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor 2-oxoglutarate, asparaginyl hydroxylase,; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 1mze_A* 1mzf_A* 1iz3_A
Probab=54.74 E-value=6.5 Score=18.65 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=15.4
Q ss_pred CCCCCCEEEEECCCEEEEEEEECC
Q ss_conf 057786798726975589998779
Q T0630 7 EPKPGDLIEIFRPFYRHWAIYVGD 30 (132)
Q Consensus 7 ~~k~GDlI~~~r~~y~H~GIYvGd 30 (132)
.++|||+|++|.+.+ |+..-+++
T Consensus 264 ~l~pGd~LfiP~~w~-H~v~~l~~ 286 (349)
T 3d8c_A 264 VVGPGDVLYIPMYWW-HHIESLLN 286 (349)
T ss_dssp EECTTCEEEECTTCE-EEEEECTT
T ss_pred EECCCCEEEECCCCC-EEEEECCC
T ss_conf 988998898689986-89998689
No 18
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=54.50 E-value=10 Score=17.35 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCCCCCCCCCEEEEECCC---EEEEEEEE--CCCEE
Q ss_conf 881005778679872697---55899987--79179
Q T0630 3 APIPEPKPGDLIEIFRPF---YRHWAIYV--GDGYV 33 (132)
Q Consensus 3 ~~~~~~k~GDlI~~~r~~---y~H~GIYv--Gdg~V 33 (132)
.+...|++||||-.++.. |=|.||.+ .++.|
T Consensus 107 G~~~~P~~gdLlI~~~~~~~p~GHVAVVt~V~~~~V 142 (652)
T 2vob_A 107 GTTTKPEADALLVYPSTDANPVGHVGTITEVGDDYV 142 (652)
T ss_dssp SBSSCCCSSEEEEECCCSSCTTCEEEEEEEECSSEE
T ss_pred CCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCCEE
T ss_conf 998999998189967999998756999999828848
No 19
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=43.20 E-value=16 Score=16.26 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=14.8
Q ss_pred CCCCCCEEEEECCCEEEEEEEECCCEE
Q ss_conf 057786798726975589998779179
Q T0630 7 EPKPGDLIEIFRPFYRHWAIYVGDGYV 33 (132)
Q Consensus 7 ~~k~GDlI~~~r~~y~H~GIYvGdg~V 33 (132)
+.++||+|.+|.+.| ||---..+++|
T Consensus 130 ~~~~GDlI~iPag~~-H~Ftl~~~~~i 155 (191)
T 1vr3_A 130 SMEKGDMITLPAGIY-HRFTLDEKNYV 155 (191)
T ss_dssp EEETTEEEEECTTCC-EEEEECTTCCE
T ss_pred EEECCCEEEECCCCC-EEEECCCCCCE
T ss_conf 992698999799983-74006898878
No 20
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=42.66 E-value=7.1 Score=18.38 Aligned_cols=15 Identities=20% Similarity=0.009 Sum_probs=9.4
Q ss_pred CCCCCCEEEEECCCE
Q ss_conf 057786798726975
Q T0630 7 EPKPGDLIEIFRPFY 21 (132)
Q Consensus 7 ~~k~GDlI~~~r~~y 21 (132)
..++||+|.+|-+.+
T Consensus 125 ~~~~GDlI~VPag~~ 139 (179)
T 1zrr_A 125 LCEKNDLISVPAHTP 139 (179)
T ss_dssp ECCCSCEEEECTTCC
T ss_pred EECCCCEEEECCCCE
T ss_conf 974898899699986
No 21
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=31.24 E-value=12 Score=17.06 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=14.6
Q ss_pred CCCCCCCCCCEEEEECCC
Q ss_conf 881005778679872697
Q T0630 3 APIPEPKPGDLIEIFRPF 20 (132)
Q Consensus 3 ~~~~~~k~GDlI~~~r~~ 20 (132)
.|..++++||+|.+.-+-
T Consensus 37 V~~~~L~~GDii~v~~G~ 54 (124)
T 2kij_A 37 VDVELVQRGDIIKVVPGG 54 (124)
T ss_dssp EETTTCCTTCEEECCTTC
T ss_pred EEHHHCCCCCEEEECCCC
T ss_conf 888998869999999999
No 22
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=29.74 E-value=15 Score=16.42 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCEEEEECCC
Q ss_conf 8881005778679872697
Q T0630 2 RAPIPEPKPGDLIEIFRPF 20 (132)
Q Consensus 2 ~~~~~~~k~GDlI~~~r~~ 20 (132)
+.|..+++|||+|.+.-+-
T Consensus 24 ~i~~~~l~~GDiv~v~~G~ 42 (113)
T 2hc8_A 24 AVPVEEVAVGDIVIVRPGE 42 (113)
T ss_dssp EEEGGGCCTTCEEEECTTC
T ss_pred EEEHHHCCCCCEEEECCCC
T ss_conf 9998997689999989999
No 23
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PSI-2, protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=24.17 E-value=33 Score=14.30 Aligned_cols=13 Identities=8% Similarity=0.296 Sum_probs=5.4
Q ss_pred CCCCCEEEEECCC
Q ss_conf 5778679872697
Q T0630 8 PKPGDLIEIFRPF 20 (132)
Q Consensus 8 ~k~GDlI~~~r~~ 20 (132)
+++||.|.++++.
T Consensus 71 l~~Gd~i~ip~G~ 83 (107)
T 2i45_A 71 IREGEMAVVPKSV 83 (107)
T ss_dssp ECTTEEEEECTTC
T ss_pred ECCCCEEEECCCC
T ss_conf 0499689908989
No 24
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics consortium, SGC; 1.30A {Homo sapiens}
Probab=22.80 E-value=29 Score=14.65 Aligned_cols=21 Identities=14% Similarity=-0.007 Sum_probs=17.6
Q ss_pred CCCCCCCEEEEECCCEEEEEE
Q ss_conf 005778679872697558999
Q T0630 6 PEPKPGDLIEIFRPFYRHWAI 26 (132)
Q Consensus 6 ~~~k~GDlI~~~r~~y~H~GI 26 (132)
.+++||||+...-.+|-.|=-
T Consensus 4 ~~~~pgdlVWaK~~gyPwWPa 24 (130)
T 3l42_A 4 SPLDALDLVWAKCRGYPSYPA 24 (130)
T ss_dssp SSSCTTCEEEECCTTSCCEEE
T ss_pred CCCCCCCEEEEECCCCCCCCE
T ss_conf 878877689997898899997
No 25
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2
Probab=22.69 E-value=26 Score=14.91 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=9.2
Q ss_pred CCCCCCCCCCEEE
Q ss_conf 8810057786798
Q T0630 3 APIPEPKPGDLIE 15 (132)
Q Consensus 3 ~~~~~~k~GDlI~ 15 (132)
.|+.++.+||.+.
T Consensus 17 ~~I~dl~~g~~~~ 29 (199)
T 1am2_A 17 VRIADIVPGARPN 29 (199)
T ss_dssp EEGGGSSTTCCTT
T ss_pred EEHHHHHCCCCCC
T ss_conf 8978823878840
No 26
>3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str}
Probab=20.11 E-value=39 Score=13.79 Aligned_cols=15 Identities=47% Similarity=0.543 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCEEEE
Q ss_conf 9888100577867987
Q T0630 1 MRAPIPEPKPGDLIEI 16 (132)
Q Consensus 1 ~~~~~~~~k~GDlI~~ 16 (132)
|..| +.||+||-|.+
T Consensus 4 m~~P-~~Lk~GD~I~v 18 (336)
T 3gjz_A 4 MPLP-KSLKYGDTIGI 18 (336)
T ss_dssp CCCC-CCCCTTCEEEE
T ss_pred CCCC-CCCCCCCEEEE
T ss_conf 9889-99888599999
Done!