Query         T0631 AaR89, , 303 residues
Match_columns 303
No_of_seqs    121 out of 1256
Neff          7.1 
Searched_HMMs 22458
Date          Thu Jul 22 15:02:48 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0631.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0631.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3mej_A Transcriptional regulat 100.0       0       0  450.2  21.4  255   23-293    23-281 (286)
  2 3i1n_Z 50S ribosomal protein L  20.1      18 0.00079   15.0   0.1   46  183-228    12-58  (59)
  3 1bxy_A Protein (ribosomal prot  17.1      26  0.0012   14.0   0.4   46  183-228    11-57  (60)
  4 2zjr_W 50S ribosomal protein L  16.5      19 0.00084   14.8  -0.4   45  183-227     8-53  (55)
  5 2pv0_B DNA (cytosine-5)-methyl  12.2      16 0.00071   15.2  -1.8   46   78-124   175-220 (386)
  6 2k6x_A Sigma-A, RNA polymerase  11.5      59  0.0026   11.9   4.9   54  188-248     4-57  (72)
  7 2zkr_n 60S ribosomal protein L  10.9      62  0.0028   11.8   2.4  156   55-228    56-250 (297)
  8 1ny8_A Protein YRBA; structure  10.3      66  0.0029   11.7   1.0   21  184-204    44-64  (97)
  9 3dt5_A Uncharacterized protein   9.6      70  0.0031   11.5   2.1   85  187-283     9-99  (135)
 10 1m2d_A [2Fe-2S] ferredoxin; th   9.3      72  0.0032   11.5   1.5   31  264-294    68-99  (110)

No 1  
>3mej_A Transcriptional regulator YWTF; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.49A {Bacillus subtilis}
Probab=100.00  E-value=0  Score=450.18  Aligned_cols=255  Identities=29%  Similarity=0.424  Sum_probs=227.1

Q ss_pred             CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEECCCCCCCCHHHHHHHCCH
Q ss_conf             66688876899999753788764444566677666389999981899879999975532132488886401113321238
Q T0631            23 KAEGNTAMNILVLGSDSRGSSDADVEANTATDQRADTLMLVHVPADRKKTYAISLMRDLWIDIPGVGESKINAALAYGGV  102 (303)
Q Consensus        23 ~~~~~~~~niLl~G~D~r~~~~~~~~~~~~~~~rsDsi~l~~v~~~~~~i~lvSIPRDt~V~ip~~~~~Kln~ay~~gG~  102 (303)
                      .....+|+||||+|+|+|.+..     ...+++|||+|||+++|+++++++++||||||+|++|+++.+|||+||++||+
T Consensus        23 ~~~~~~~~niLl~G~D~r~~~~-----~~~~~~rsDti~l~~i~~~~~~~~lvSIPRDt~v~i~g~~~~KiN~ay~~gG~   97 (286)
T 3mej_A           23 FDPGKDSFSVLLLGIDAREKNG-----ETVDQARSDANVLVTFNRKEKTAKMLSIPRDAYVNIPGHGYDKFTHAHAYGGV   97 (286)
T ss_dssp             CCSSSSCEEEEEEEEC---------------CCCEEEEEEEEEETTTTEEEEEECCTTBEEEETTTEEEETTHHHHHHHH
T ss_pred             CCCCCCCEEEEEEEEECCCCCC-----CCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCH
T ss_conf             6889997799999971698888-----87888873179999986999878999837665231699970544564616879


Q ss_pred             HHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCEEEECCCCCCCCC---CCCCCEEECCCCEEECHHHHHHHHHHHCC
Q ss_conf             999999998718874527898158999999721881552275423267---87675252278447277999999986358
Q T0631           103 PLMVQTVESLLQQRIDHVAMIDFQGFKGLTDALGGVEVDVRIPFAPSS---GPKAGQVYDAGKQTLNGDEALAFVRERKA  179 (303)
Q Consensus       103 ~~~~~tV~~llgi~Id~yv~v~~~~f~~lVD~lGGV~V~v~~~~~~~~---~~~~~~~~~~G~q~L~G~qAl~y~R~R~~  179 (303)
                      ++++++|+++||+|||||+.|||++|.++||+||||+||+|.++.+..   +...++++++|+|+|||+|||+|+|+||.
T Consensus        98 ~~~~~tve~llgi~Id~yv~vdf~~f~~lvDalGGV~V~v~~~~~~~~~~~~~~~~~~~~~G~q~L~G~~Al~y~R~R~~  177 (286)
T 3mej_A           98 DLTVKTVEEMLDIPVDYVVESNFTAFEDVVNELNGVKVTVKSDKVIQQIKKDTKGKVVLQKGTHTLDGEEALAYVRTRKA  177 (286)
T ss_dssp             HHHHHHHHHHHCSCCCEEEEEEHHHHHHHHHHTTCEEEEECCHHHHHHHHHHTTTSCCCCSEEEEECHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEECCCCEEECHHHHHHHHHCCCC
T ss_conf             99999999986999865999858999999985399899756631123466688771563588889879999874521779


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             99856899999999999999987233001377899999987550378657989899999999984478775579995233
Q T0631           180 FSDGDYQRVRNQQAYLKAIIGKVIARETLTNPVTISNMVSAVSPFVSVDKDFDAAAIGSLALSMKDVRAQDTVMFTLPTL  259 (303)
Q Consensus       180 ~~~~D~~R~~RQq~vl~al~~k~~s~~~~~~~~kl~~l~~~~~~~~~tdtnl~~~~l~~l~~~~~~~~~~~i~~~tlP~~  259 (303)
                        +||++|++|||+||+|+++|+++.   .++.+++.+++.+.++++||  ++..++.+|+..+.++  .++++.++|+.
T Consensus       178 --~~D~~R~~RQq~vl~al~~k~~~~---~~i~~l~~l~~~~~~~v~Tn--l~~~~~~~L~~~~~~~--~~i~~~~l~g~  248 (286)
T 3mej_A          178 --DSDLLRGQRQMEVLSAIIDKSKSL---SSIPAYDDIVDTMGQNLKMN--LSLKDAIGLFPFITSL--KSVESIQLTGY  248 (286)
T ss_dssp             ---CCCSHHHHHHHHHHHHHHHHHCC-------------CCCCCSCEES--SCHHHHHHHHHHHTTC--SEEEEECCCEE
T ss_pred             --CCHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHEEEC--CCHHHHHHHHHHHHHC--CCCCEEEEECC
T ss_conf             --980869999999999999987496---63778999999987056868--9989999999998716--89706985066


Q ss_pred             CCCCCCCCEEEEEECHHHHHHHHHHHHCC-CCCCC
Q ss_conf             47666586379983879999999998638-87400
Q T0631           260 GTGTSPDGQSIVLADTTAIADVTAALAKD-QVDAY  293 (303)
Q Consensus       260 ~~~~~~~g~~~~~~d~~~~~~l~~~l~~~-~~~~~  293 (303)
                        +...+|.|||.||++++++++++|+++ .+.|+
T Consensus       249 --~~~~~g~~y~~~d~~~~~~i~~~l~~dl~l~e~  281 (286)
T 3mej_A          249 --DYEPAGVYYFKLNQQKLQEVKKELQNDLGVLEH  281 (286)
T ss_dssp             --EECTTSCCEEEECHHHHHHHHHHHHHHHTCC--
T ss_pred             --CEEECCEEEEEECHHHHHHHHHHHHHHCCCCCC
T ss_conf             --454288589994999999999999972898511


No 2  
>3i1n_Z 50S ribosomal protein L30; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_Y 3e1b_R 3e1d_R 1vs6_Y 3i1p_Z 3i1r_Z 3i1t_Z 3i20_Z 3i22_Z 3kcr_Z 2qam_Y* 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* ...
Probab=20.11  E-value=18  Score=14.98  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=35.1

Q ss_pred             CHHHHHHHHHHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHCEEEC
Q ss_conf             5689999999999999-998723300137789999998755037865
Q T0631           183 GDYQRVRNQQAYLKAI-IGKVIARETLTNPVTISNMVSAVSPFVSVD  228 (303)
Q Consensus       183 ~D~~R~~RQq~vl~al-~~k~~s~~~~~~~~kl~~l~~~~~~~~~td  228 (303)
                      |-.++..+|+..+++| ++|.-+.-...+-+.+.+++..+...+.++
T Consensus        12 S~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kV~hLV~Ve   58 (59)
T 3i1n_Z           12 SAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVE   58 (59)
T ss_dssp             CCSSCCHHHHHHHHHHTCCSTTCCEEECCCHHHHHHHHHTGGGCEEE
T ss_pred             CCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHEEEEE
T ss_conf             88998989999999819998999899669988988999766515874


No 3  
>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ...
Probab=17.13  E-value=26  Score=14.02  Aligned_cols=46  Identities=24%  Similarity=0.335  Sum_probs=35.5

Q ss_pred             CHHHHHHHHHHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHCEEEC
Q ss_conf             5689999999999999-998723300137789999998755037865
Q T0631           183 GDYQRVRNQQAYLKAI-IGKVIARETLTNPVTISNMVSAVSPFVSVD  228 (303)
Q Consensus       183 ~D~~R~~RQq~vl~al-~~k~~s~~~~~~~~kl~~l~~~~~~~~~td  228 (303)
                      |-.++...|+..+.+| ++|..+.-...+-+.+.++++.+...++++
T Consensus        11 S~ig~~~~~r~tl~~LGL~k~~~~v~~~~tp~i~Gmi~kVkhLV~ve   57 (60)
T 1bxy_A           11 SPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVE   57 (60)
T ss_dssp             CCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEE
T ss_pred             CCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHEEEEE
T ss_conf             88998989999999809997999899669988987999644447999


No 4  
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W*
Probab=16.49  E-value=19  Score=14.84  Aligned_cols=45  Identities=20%  Similarity=0.285  Sum_probs=34.0

Q ss_pred             CHHHHHHHHHHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHCEEE
Q ss_conf             5689999999999999-99872330013778999999875503786
Q T0631           183 GDYQRVRNQQAYLKAI-IGKVIARETLTNPVTISNMVSAVSPFVSV  227 (303)
Q Consensus       183 ~D~~R~~RQq~vl~al-~~k~~s~~~~~~~~kl~~l~~~~~~~~~t  227 (303)
                      |..++...|+..+++| ++|..+.-...+-+.+.+++..+...+.+
T Consensus         8 S~iG~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kV~hLV~V   53 (55)
T 2zjr_W            8 SVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEV   53 (55)
T ss_dssp             CSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCC
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHEEEE
T ss_conf             8899898999999980999799989957998898899975650697


No 5  
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=12.23  E-value=16  Score=15.25  Aligned_cols=46  Identities=7%  Similarity=0.141  Sum_probs=33.4

Q ss_pred             CCCCEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             55321324888864011133212389999999987188745278981
Q T0631            78 MRDLWIDIPGVGESKINAALAYGGVPLMVQTVESLLQQRIDHVAMID  124 (303)
Q Consensus        78 PRDt~V~ip~~~~~Kln~ay~~gG~~~~~~tV~~llgi~Id~yv~v~  124 (303)
                      |...|-.+|.....+|.-.-.++|+.+-..++ +.+|+.||.|..-.
T Consensus       175 ~~~~~~~v~~~~r~~irVlSLFdGi~~g~~aL-~~~~~~~d~~~i~~  220 (386)
T 2pv0_B          175 PLEMFETVPVWRRQPVRVLSLFEDIKKELTSL-GFLESGSDPGQLKH  220 (386)
T ss_dssp             CCCCCCCCCGGGCCCCCEEEESSCCHHHHHHT-TSSCSSCCSCSEEE
T ss_pred             CCCCCCCCCHHHCCCCEEEEEECCCCHHHHHH-HHHHCCCCCCCEEE
T ss_conf             42136777655547866898525730379998-87523035012035


No 6  
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=11.53  E-value=59  Score=11.95  Aligned_cols=54  Identities=15%  Similarity=0.198  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             9999999999999872330013778999999875503786579898999999999844787
Q T0631           188 VRNQQAYLKAIIGKVIARETLTNPVTISNMVSAVSPFVSVDKDFDAAAIGSLALSMKDVRA  248 (303)
Q Consensus       188 ~~RQq~vl~al~~k~~s~~~~~~~~kl~~l~~~~~~~~~tdtnl~~~~l~~l~~~~~~~~~  248 (303)
                      +..+|+-++.|+.+-+..+.++    +..+.+++-..+   ..+++.++-.+...+..+.-
T Consensus         4 m~~~~~~ik~LI~~GK~~GylT----y~eIn~~LP~d~---~~~~~e~id~v~~~L~~~GI   57 (72)
T 2k6x_A            4 MPQIERRIKKLISLGKKKGYIT----YEDIDKAFPPDF---EGFDTNLIERIHEELEKHGI   57 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCB----HHHHHHHCSCSC---SSCCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCC----HHHHHHHCCCCC---CCCCHHHHHHHHHHHHHCCC
T ss_conf             7899999999999876268485----999998766654---41699999999999998898


No 7  
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=10.94  E-value=62  Score=11.83  Aligned_cols=156  Identities=15%  Similarity=0.248  Sum_probs=75.1

Q ss_pred             CCCCEEEEEEECCCCCEEEEEEECCCCEEECCCCC----CCCHHHHHHHCCHHHHHHHHHHH------HCC-CC------
Q ss_conf             66638999998189987999997553213248888----64011133212389999999987------188-74------
Q T0631            55 QRADTLMLVHVPADRKKTYAISLMRDLWIDIPGVG----ESKINAALAYGGVPLMVQTVESL------LQQ-RI------  117 (303)
Q Consensus        55 ~rsDsi~l~~v~~~~~~i~lvSIPRDt~V~ip~~~----~~Kln~ay~~gG~~~~~~tV~~l------lgi-~I------  117 (303)
                      .+.|.+.-+..-.-.+...+.|.-.-.+   |.+|    ..-.-+||.. |.=+..+++..+      -|. .+      
T Consensus        56 TN~~ii~Qiv~a~~~GD~v~~sA~S~EL---~kyG~k~gltN~~AAY~T-GlL~arR~L~k~~ld~~y~g~~e~~Ge~~~  131 (297)
T 2zkr_n           56 TNRDIICQIAYARIEGDMIVCARYAHEL---PKYGVKVGLTNYAAAYCT-GLLLARRLLNRFGMDKIYEGQVEVTGDEYN  131 (297)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEEEGGGG---GGTCCCSCSSSHHHHHHH-HHHHHHHHHCCCSCCCCCSSCCSSSSCCCC
T ss_pred             ECCCEEEEEEEEECCCCEEEEEECHHHH---HHCCCCCCCCCHHHHHHH-HHHHHHHHHHHCCCHHHHCCCCCCCCCCCC
T ss_conf             4794799999960689889996102037---555867787625999999-999999998761730120464013464024


Q ss_pred             ----C-----EEEEEC------------HHHHHHHHHHCCCEEEECCC-CCCCCCCCCCCEEECCCCEEECHHHHHHHHH
Q ss_conf             ----5-----278981------------58999999721881552275-4232678767525227844727799999998
Q T0631           118 ----D-----HVAMID------------FQGFKGLTDALGGVEVDVRI-PFAPSSGPKAGQVYDAGKQTLNGDEALAFVR  175 (303)
Q Consensus       118 ----d-----~yv~v~------------~~~f~~lVD~lGGV~V~v~~-~~~~~~~~~~~~~~~~G~q~L~G~qAl~y~R  175 (303)
                          +     .-+.+|            |.++..+||  ||++|.... -|...+......+-..=..++-|...-.|++
T Consensus       132 ve~~~~~~g~f~a~LDiGL~rtttG~RVFaaLKGavD--gGL~IPHse~rfPg~d~e~~e~dae~~r~rI~G~HVa~Ym~  209 (297)
T 2zkr_n          132 VESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVD--GGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMR  209 (297)
T ss_dssp             CSSSCSSSCCCBEEEECTTSCCCTTCHHHHHHHHHHH--TTCBCCCCGGGSCCCCCCCCCC-CCCCCSSSSSSHHHHHHH
T ss_pred             CCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHH
T ss_conf             4444578885169974365556678657876402335--77247898863788664434346233330105540999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEEC
Q ss_conf             63589985689999999999999998723300137789999998755037865
Q T0631           176 ERKAFSDGDYQRVRNQQAYLKAIIGKVIARETLTNPVTISNMVSAVSPFVSVD  228 (303)
Q Consensus       176 ~R~~~~~~D~~R~~RQq~vl~al~~k~~s~~~~~~~~kl~~l~~~~~~~~~td  228 (303)
                      .-....+.-|   ++|       +.+.+..++  +|..|.+++..+...|.-|
T Consensus       210 ~Lkeedee~y---k~q-------Fs~Yik~gi--~~~~le~~y~~ah~~Ir~d  250 (297)
T 2zkr_n          210 YLMEEDEDAY---KKQ-------FSQYIKNSV--TPDMMEEMYKKAHAAIREN  250 (297)
T ss_dssp             TCSSSCTTTC---SSC-------EEEEETTEE--ESSCCSHHHHHHHHHC---
T ss_pred             HHHHHCHHHH---HHH-------HHHHHHCCC--CHHHHHHHHHHHHHHHHHC
T ss_conf             8653187899---999-------999998599--8668999999999999849


No 8  
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=10.31  E-value=66  Score=11.70  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             689999999999999998723
Q T0631           184 DYQRVRNQQAYLKAIIGKVIA  204 (303)
Q Consensus       184 D~~R~~RQq~vl~al~~k~~s  204 (303)
                      +..|++|||.|.++|-+.+.+
T Consensus        44 g~s~v~RHr~Vy~~L~~~i~~   64 (97)
T 1ny8_A           44 GMSRVKKQQTVYGPLMEYIAD   64 (97)
T ss_dssp             SSCHHHHHHHHHTTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCC
T ss_conf             998899999999999998658


No 9  
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=9.55  E-value=70  Score=11.53  Aligned_cols=85  Identities=18%  Similarity=0.156  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCC--CCCC
Q ss_conf             99999999999999872330013778999999875503786579898999999999844787755799952334--7666
Q T0631           187 RVRNQQAYLKAIIGKVIARETLTNPVTISNMVSAVSPFVSVDKDFDAAAIGSLALSMKDVRAQDTVMFTLPTLG--TGTS  264 (303)
Q Consensus       187 R~~RQq~vl~al~~k~~s~~~~~~~~kl~~l~~~~~~~~~tdtnl~~~~l~~l~~~~~~~~~~~i~~~tlP~~~--~~~~  264 (303)
                      -+.|||. ++|+-.++-.        .+..+++++++++.  |.-+..++-.+...-+-+.++++- ..+|..-  ....
T Consensus         9 lmarqqr-lkaiedrlek--------fyiplikafssyvy--taqtedeietiitcrrylagnnll-rvlpmhfkfkadk   76 (135)
T 3dt5_A            9 LMARQQR-LKAIEDRLEK--------FYIPLIKAFSSYVY--TAQTEDEIETIITCRRYLAGNNLL-RVLPMHFKFKADK   76 (135)
T ss_dssp             ------C-HHHHHHHHHH--------THHHHHHHHHSSCC--CTTHHHHHHHHHHTTGGGSCHHHH-HHCCSCCGGGEEC
T ss_pred             HHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHE--ECCCHHHHHHHHHHHHHHCCCCHH-HHCCHHEEEECCH
T ss_conf             9999989-9999999988--------88999999876710--122234788999999886365255-3210131330002


Q ss_pred             CCCE--EEEEE--CHHHHHHHHH
Q ss_conf             5863--79983--8799999999
Q T0631           265 PDGQ--SIVLA--DTTAIADVTA  283 (303)
Q Consensus       265 ~~g~--~~~~~--d~~~~~~l~~  283 (303)
                      +.|.  |.++.  |.+++++..+
T Consensus        77 iagsanwtfyakedfeqwkeald   99 (135)
T 3dt5_A           77 IAGSANWTFYAKEDFEQWKEALD   99 (135)
T ss_dssp             CTTCSSEEESSHHHHHHHHHHHH
T ss_pred             HCCCCCEEEEEHHHHHHHHHHHH
T ss_conf             14556516774765999999999


No 10 
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=9.29  E-value=72  Score=11.47  Aligned_cols=31  Identities=13%  Similarity=0.171  Sum_probs=23.7

Q ss_pred             CCCCEEEEEECHHHHHHHHHH-HHCCCCCCCC
Q ss_conf             658637998387999999999-8638874000
Q T0631           264 SPDGQSIVLADTTAIADVTAA-LAKDQVDAYI  294 (303)
Q Consensus       264 ~~~g~~~~~~d~~~~~~l~~~-l~~~~~~~~~  294 (303)
                      .++|.||-.++++.+.++++. +.++++-+.+
T Consensus        68 ~P~g~~Y~~v~~e~v~~Iv~ehl~~g~~v~~l   99 (110)
T 1m2d_A           68 YPDGVWYGQVKPEDVDEIVEKHLKGGEPVERL   99 (110)
T ss_dssp             ETTTEEECSCCGGGHHHHHHHTTTTSCCCGGG
T ss_pred             ECCCCEEECCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             27987794799999999999999889673025


Done!