Query T0631 AaR89, , 303 residues
Match_columns 303
No_of_seqs 121 out of 1256
Neff 7.1
Searched_HMMs 22458
Date Thu Jul 22 15:02:48 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0631.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0631.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mej_A Transcriptional regulat 100.0 0 0 450.2 21.4 255 23-293 23-281 (286)
2 3i1n_Z 50S ribosomal protein L 20.1 18 0.00079 15.0 0.1 46 183-228 12-58 (59)
3 1bxy_A Protein (ribosomal prot 17.1 26 0.0012 14.0 0.4 46 183-228 11-57 (60)
4 2zjr_W 50S ribosomal protein L 16.5 19 0.00084 14.8 -0.4 45 183-227 8-53 (55)
5 2pv0_B DNA (cytosine-5)-methyl 12.2 16 0.00071 15.2 -1.8 46 78-124 175-220 (386)
6 2k6x_A Sigma-A, RNA polymerase 11.5 59 0.0026 11.9 4.9 54 188-248 4-57 (72)
7 2zkr_n 60S ribosomal protein L 10.9 62 0.0028 11.8 2.4 156 55-228 56-250 (297)
8 1ny8_A Protein YRBA; structure 10.3 66 0.0029 11.7 1.0 21 184-204 44-64 (97)
9 3dt5_A Uncharacterized protein 9.6 70 0.0031 11.5 2.1 85 187-283 9-99 (135)
10 1m2d_A [2Fe-2S] ferredoxin; th 9.3 72 0.0032 11.5 1.5 31 264-294 68-99 (110)
No 1
>3mej_A Transcriptional regulator YWTF; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.49A {Bacillus subtilis}
Probab=100.00 E-value=0 Score=450.18 Aligned_cols=255 Identities=29% Similarity=0.424 Sum_probs=227.1
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEECCCCCCCCHHHHHHHCCH
Q ss_conf 66688876899999753788764444566677666389999981899879999975532132488886401113321238
Q T0631 23 KAEGNTAMNILVLGSDSRGSSDADVEANTATDQRADTLMLVHVPADRKKTYAISLMRDLWIDIPGVGESKINAALAYGGV 102 (303)
Q Consensus 23 ~~~~~~~~niLl~G~D~r~~~~~~~~~~~~~~~rsDsi~l~~v~~~~~~i~lvSIPRDt~V~ip~~~~~Kln~ay~~gG~ 102 (303)
.....+|+||||+|+|+|.+.. ...+++|||+|||+++|+++++++++||||||+|++|+++.+|||+||++||+
T Consensus 23 ~~~~~~~~niLl~G~D~r~~~~-----~~~~~~rsDti~l~~i~~~~~~~~lvSIPRDt~v~i~g~~~~KiN~ay~~gG~ 97 (286)
T 3mej_A 23 FDPGKDSFSVLLLGIDAREKNG-----ETVDQARSDANVLVTFNRKEKTAKMLSIPRDAYVNIPGHGYDKFTHAHAYGGV 97 (286)
T ss_dssp CCSSSSCEEEEEEEEC---------------CCCEEEEEEEEEETTTTEEEEEECCTTBEEEETTTEEEETTHHHHHHHH
T ss_pred CCCCCCCEEEEEEEEECCCCCC-----CCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCH
T ss_conf 6889997799999971698888-----87888873179999986999878999837665231699970544564616879
Q ss_pred HHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCEEEECCCCCCCCC---CCCCCEEECCCCEEECHHHHHHHHHHHCC
Q ss_conf 999999998718874527898158999999721881552275423267---87675252278447277999999986358
Q T0631 103 PLMVQTVESLLQQRIDHVAMIDFQGFKGLTDALGGVEVDVRIPFAPSS---GPKAGQVYDAGKQTLNGDEALAFVRERKA 179 (303)
Q Consensus 103 ~~~~~tV~~llgi~Id~yv~v~~~~f~~lVD~lGGV~V~v~~~~~~~~---~~~~~~~~~~G~q~L~G~qAl~y~R~R~~ 179 (303)
++++++|+++||+|||||+.|||++|.++||+||||+||+|.++.+.. +...++++++|+|+|||+|||+|+|+||.
T Consensus 98 ~~~~~tve~llgi~Id~yv~vdf~~f~~lvDalGGV~V~v~~~~~~~~~~~~~~~~~~~~~G~q~L~G~~Al~y~R~R~~ 177 (286)
T 3mej_A 98 DLTVKTVEEMLDIPVDYVVESNFTAFEDVVNELNGVKVTVKSDKVIQQIKKDTKGKVVLQKGTHTLDGEEALAYVRTRKA 177 (286)
T ss_dssp HHHHHHHHHHHCSCCCEEEEEEHHHHHHHHHHTTCEEEEECCHHHHHHHHHHTTTSCCCCSEEEEECHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEECCCCEEECHHHHHHHHHCCCC
T ss_conf 99999999986999865999858999999985399899756631123466688771563588889879999874521779
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 99856899999999999999987233001377899999987550378657989899999999984478775579995233
Q T0631 180 FSDGDYQRVRNQQAYLKAIIGKVIARETLTNPVTISNMVSAVSPFVSVDKDFDAAAIGSLALSMKDVRAQDTVMFTLPTL 259 (303)
Q Consensus 180 ~~~~D~~R~~RQq~vl~al~~k~~s~~~~~~~~kl~~l~~~~~~~~~tdtnl~~~~l~~l~~~~~~~~~~~i~~~tlP~~ 259 (303)
+||++|++|||+||+|+++|+++. .++.+++.+++.+.++++|| ++..++.+|+..+.++ .++++.++|+.
T Consensus 178 --~~D~~R~~RQq~vl~al~~k~~~~---~~i~~l~~l~~~~~~~v~Tn--l~~~~~~~L~~~~~~~--~~i~~~~l~g~ 248 (286)
T 3mej_A 178 --DSDLLRGQRQMEVLSAIIDKSKSL---SSIPAYDDIVDTMGQNLKMN--LSLKDAIGLFPFITSL--KSVESIQLTGY 248 (286)
T ss_dssp ---CCCSHHHHHHHHHHHHHHHHHCC-------------CCCCCSCEES--SCHHHHHHHHHHHTTC--SEEEEECCCEE
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHEEEC--CCHHHHHHHHHHHHHC--CCCCEEEEECC
T ss_conf --980869999999999999987496---63778999999987056868--9989999999998716--89706985066
Q ss_pred CCCCCCCCEEEEEECHHHHHHHHHHHHCC-CCCCC
Q ss_conf 47666586379983879999999998638-87400
Q T0631 260 GTGTSPDGQSIVLADTTAIADVTAALAKD-QVDAY 293 (303)
Q Consensus 260 ~~~~~~~g~~~~~~d~~~~~~l~~~l~~~-~~~~~ 293 (303)
+...+|.|||.||++++++++++|+++ .+.|+
T Consensus 249 --~~~~~g~~y~~~d~~~~~~i~~~l~~dl~l~e~ 281 (286)
T 3mej_A 249 --DYEPAGVYYFKLNQQKLQEVKKELQNDLGVLEH 281 (286)
T ss_dssp --EECTTSCCEEEECHHHHHHHHHHHHHHHTCC--
T ss_pred --CEEECCEEEEEECHHHHHHHHHHHHHHCCCCCC
T ss_conf --454288589994999999999999972898511
No 2
>3i1n_Z 50S ribosomal protein L30; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_Y 3e1b_R 3e1d_R 1vs6_Y 3i1p_Z 3i1r_Z 3i1t_Z 3i20_Z 3i22_Z 3kcr_Z 2qam_Y* 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* ...
Probab=20.11 E-value=18 Score=14.98 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHCEEEC
Q ss_conf 5689999999999999-998723300137789999998755037865
Q T0631 183 GDYQRVRNQQAYLKAI-IGKVIARETLTNPVTISNMVSAVSPFVSVD 228 (303)
Q Consensus 183 ~D~~R~~RQq~vl~al-~~k~~s~~~~~~~~kl~~l~~~~~~~~~td 228 (303)
|-.++..+|+..+++| ++|.-+.-...+-+.+.+++..+...+.++
T Consensus 12 S~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kV~hLV~Ve 58 (59)
T 3i1n_Z 12 SAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVE 58 (59)
T ss_dssp CCSSCCHHHHHHHHHHTCCSTTCCEEECCCHHHHHHHHHTGGGCEEE
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHEEEEE
T ss_conf 88998989999999819998999899669988988999766515874
No 3
>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ...
Probab=17.13 E-value=26 Score=14.02 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHCEEEC
Q ss_conf 5689999999999999-998723300137789999998755037865
Q T0631 183 GDYQRVRNQQAYLKAI-IGKVIARETLTNPVTISNMVSAVSPFVSVD 228 (303)
Q Consensus 183 ~D~~R~~RQq~vl~al-~~k~~s~~~~~~~~kl~~l~~~~~~~~~td 228 (303)
|-.++...|+..+.+| ++|..+.-...+-+.+.++++.+...++++
T Consensus 11 S~ig~~~~~r~tl~~LGL~k~~~~v~~~~tp~i~Gmi~kVkhLV~ve 57 (60)
T 1bxy_A 11 SPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVE 57 (60)
T ss_dssp CCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEE
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHEEEEE
T ss_conf 88998989999999809997999899669988987999644447999
No 4
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W*
Probab=16.49 E-value=19 Score=14.84 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHCEEE
Q ss_conf 5689999999999999-99872330013778999999875503786
Q T0631 183 GDYQRVRNQQAYLKAI-IGKVIARETLTNPVTISNMVSAVSPFVSV 227 (303)
Q Consensus 183 ~D~~R~~RQq~vl~al-~~k~~s~~~~~~~~kl~~l~~~~~~~~~t 227 (303)
|..++...|+..+++| ++|..+.-...+-+.+.+++..+...+.+
T Consensus 8 S~iG~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kV~hLV~V 53 (55)
T 2zjr_W 8 SVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEV 53 (55)
T ss_dssp CSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCC
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHEEEE
T ss_conf 8899898999999980999799989957998898899975650697
No 5
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=12.23 E-value=16 Score=15.25 Aligned_cols=46 Identities=7% Similarity=0.141 Sum_probs=33.4
Q ss_pred CCCCEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 55321324888864011133212389999999987188745278981
Q T0631 78 MRDLWIDIPGVGESKINAALAYGGVPLMVQTVESLLQQRIDHVAMID 124 (303)
Q Consensus 78 PRDt~V~ip~~~~~Kln~ay~~gG~~~~~~tV~~llgi~Id~yv~v~ 124 (303)
|...|-.+|.....+|.-.-.++|+.+-..++ +.+|+.||.|..-.
T Consensus 175 ~~~~~~~v~~~~r~~irVlSLFdGi~~g~~aL-~~~~~~~d~~~i~~ 220 (386)
T 2pv0_B 175 PLEMFETVPVWRRQPVRVLSLFEDIKKELTSL-GFLESGSDPGQLKH 220 (386)
T ss_dssp CCCCCCCCCGGGCCCCCEEEESSCCHHHHHHT-TSSCSSCCSCSEEE
T ss_pred CCCCCCCCCHHHCCCCEEEEEECCCCHHHHHH-HHHHCCCCCCCEEE
T ss_conf 42136777655547866898525730379998-87523035012035
No 6
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=11.53 E-value=59 Score=11.95 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999872330013778999999875503786579898999999999844787
Q T0631 188 VRNQQAYLKAIIGKVIARETLTNPVTISNMVSAVSPFVSVDKDFDAAAIGSLALSMKDVRA 248 (303)
Q Consensus 188 ~~RQq~vl~al~~k~~s~~~~~~~~kl~~l~~~~~~~~~tdtnl~~~~l~~l~~~~~~~~~ 248 (303)
+..+|+-++.|+.+-+..+.++ +..+.+++-..+ ..+++.++-.+...+..+.-
T Consensus 4 m~~~~~~ik~LI~~GK~~GylT----y~eIn~~LP~d~---~~~~~e~id~v~~~L~~~GI 57 (72)
T 2k6x_A 4 MPQIERRIKKLISLGKKKGYIT----YEDIDKAFPPDF---EGFDTNLIERIHEELEKHGI 57 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCB----HHHHHHHCSCSC---SSCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCC----HHHHHHHCCCCC---CCCCHHHHHHHHHHHHHCCC
T ss_conf 7899999999999876268485----999998766654---41699999999999998898
No 7
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=10.94 E-value=62 Score=11.83 Aligned_cols=156 Identities=15% Similarity=0.248 Sum_probs=75.1
Q ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCEEECCCCC----CCCHHHHHHHCCHHHHHHHHHHH------HCC-CC------
Q ss_conf 66638999998189987999997553213248888----64011133212389999999987------188-74------
Q T0631 55 QRADTLMLVHVPADRKKTYAISLMRDLWIDIPGVG----ESKINAALAYGGVPLMVQTVESL------LQQ-RI------ 117 (303)
Q Consensus 55 ~rsDsi~l~~v~~~~~~i~lvSIPRDt~V~ip~~~----~~Kln~ay~~gG~~~~~~tV~~l------lgi-~I------ 117 (303)
.+.|.+.-+..-.-.+...+.|.-.-.+ |.+| ..-.-+||.. |.=+..+++..+ -|. .+
T Consensus 56 TN~~ii~Qiv~a~~~GD~v~~sA~S~EL---~kyG~k~gltN~~AAY~T-GlL~arR~L~k~~ld~~y~g~~e~~Ge~~~ 131 (297)
T 2zkr_n 56 TNRDIICQIAYARIEGDMIVCARYAHEL---PKYGVKVGLTNYAAAYCT-GLLLARRLLNRFGMDKIYEGQVEVTGDEYN 131 (297)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEEEGGGG---GGTCCCSCSSSHHHHHHH-HHHHHHHHHCCCSCCCCCSSCCSSSSCCCC
T ss_pred ECCCEEEEEEEEECCCCEEEEEECHHHH---HHCCCCCCCCCHHHHHHH-HHHHHHHHHHHCCCHHHHCCCCCCCCCCCC
T ss_conf 4794799999960689889996102037---555867787625999999-999999998761730120464013464024
Q ss_pred ----C-----EEEEEC------------HHHHHHHHHHCCCEEEECCC-CCCCCCCCCCCEEECCCCEEECHHHHHHHHH
Q ss_conf ----5-----278981------------58999999721881552275-4232678767525227844727799999998
Q T0631 118 ----D-----HVAMID------------FQGFKGLTDALGGVEVDVRI-PFAPSSGPKAGQVYDAGKQTLNGDEALAFVR 175 (303)
Q Consensus 118 ----d-----~yv~v~------------~~~f~~lVD~lGGV~V~v~~-~~~~~~~~~~~~~~~~G~q~L~G~qAl~y~R 175 (303)
+ .-+.+| |.++..+|| ||++|.... -|...+......+-..=..++-|...-.|++
T Consensus 132 ve~~~~~~g~f~a~LDiGL~rtttG~RVFaaLKGavD--gGL~IPHse~rfPg~d~e~~e~dae~~r~rI~G~HVa~Ym~ 209 (297)
T 2zkr_n 132 VESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVD--GGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMR 209 (297)
T ss_dssp CSSSCSSSCCCBEEEECTTSCCCTTCHHHHHHHHHHH--TTCBCCCCGGGSCCCCCCCCCC-CCCCCSSSSSSHHHHHHH
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHH
T ss_conf 4444578885169974365556678657876402335--77247898863788664434346233330105540999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEEC
Q ss_conf 63589985689999999999999998723300137789999998755037865
Q T0631 176 ERKAFSDGDYQRVRNQQAYLKAIIGKVIARETLTNPVTISNMVSAVSPFVSVD 228 (303)
Q Consensus 176 ~R~~~~~~D~~R~~RQq~vl~al~~k~~s~~~~~~~~kl~~l~~~~~~~~~td 228 (303)
.-....+.-| ++| +.+.+..++ +|..|.+++..+...|.-|
T Consensus 210 ~Lkeedee~y---k~q-------Fs~Yik~gi--~~~~le~~y~~ah~~Ir~d 250 (297)
T 2zkr_n 210 YLMEEDEDAY---KKQ-------FSQYIKNSV--TPDMMEEMYKKAHAAIREN 250 (297)
T ss_dssp TCSSSCTTTC---SSC-------EEEEETTEE--ESSCCSHHHHHHHHHC---
T ss_pred HHHHHCHHHH---HHH-------HHHHHHCCC--CHHHHHHHHHHHHHHHHHC
T ss_conf 8653187899---999-------999998599--8668999999999999849
No 8
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=10.31 E-value=66 Score=11.70 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 689999999999999998723
Q T0631 184 DYQRVRNQQAYLKAIIGKVIA 204 (303)
Q Consensus 184 D~~R~~RQq~vl~al~~k~~s 204 (303)
+..|++|||.|.++|-+.+.+
T Consensus 44 g~s~v~RHr~Vy~~L~~~i~~ 64 (97)
T 1ny8_A 44 GMSRVKKQQTVYGPLMEYIAD 64 (97)
T ss_dssp SSCHHHHHHHHHTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCC
T ss_conf 998899999999999998658
No 9
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=9.55 E-value=70 Score=11.53 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCC--CCCC
Q ss_conf 99999999999999872330013778999999875503786579898999999999844787755799952334--7666
Q T0631 187 RVRNQQAYLKAIIGKVIARETLTNPVTISNMVSAVSPFVSVDKDFDAAAIGSLALSMKDVRAQDTVMFTLPTLG--TGTS 264 (303)
Q Consensus 187 R~~RQq~vl~al~~k~~s~~~~~~~~kl~~l~~~~~~~~~tdtnl~~~~l~~l~~~~~~~~~~~i~~~tlP~~~--~~~~ 264 (303)
-+.|||. ++|+-.++-. .+..+++++++++. |.-+..++-.+...-+-+.++++- ..+|..- ....
T Consensus 9 lmarqqr-lkaiedrlek--------fyiplikafssyvy--taqtedeietiitcrrylagnnll-rvlpmhfkfkadk 76 (135)
T 3dt5_A 9 LMARQQR-LKAIEDRLEK--------FYIPLIKAFSSYVY--TAQTEDEIETIITCRRYLAGNNLL-RVLPMHFKFKADK 76 (135)
T ss_dssp ------C-HHHHHHHHHH--------THHHHHHHHHSSCC--CTTHHHHHHHHHHTTGGGSCHHHH-HHCCSCCGGGEEC
T ss_pred HHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHE--ECCCHHHHHHHHHHHHHHCCCCHH-HHCCHHEEEECCH
T ss_conf 9999989-9999999988--------88999999876710--122234788999999886365255-3210131330002
Q ss_pred CCCE--EEEEE--CHHHHHHHHH
Q ss_conf 5863--79983--8799999999
Q T0631 265 PDGQ--SIVLA--DTTAIADVTA 283 (303)
Q Consensus 265 ~~g~--~~~~~--d~~~~~~l~~ 283 (303)
+.|. |.++. |.+++++..+
T Consensus 77 iagsanwtfyakedfeqwkeald 99 (135)
T 3dt5_A 77 IAGSANWTFYAKEDFEQWKEALD 99 (135)
T ss_dssp CTTCSSEEESSHHHHHHHHHHHH
T ss_pred HCCCCCEEEEEHHHHHHHHHHHH
T ss_conf 14556516774765999999999
No 10
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=9.29 E-value=72 Score=11.47 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=23.7
Q ss_pred CCCCEEEEEECHHHHHHHHHH-HHCCCCCCCC
Q ss_conf 658637998387999999999-8638874000
Q T0631 264 SPDGQSIVLADTTAIADVTAA-LAKDQVDAYI 294 (303)
Q Consensus 264 ~~~g~~~~~~d~~~~~~l~~~-l~~~~~~~~~ 294 (303)
.++|.||-.++++.+.++++. +.++++-+.+
T Consensus 68 ~P~g~~Y~~v~~e~v~~Iv~ehl~~g~~v~~l 99 (110)
T 1m2d_A 68 YPDGVWYGQVKPEDVDEIVEKHLKGGEPVERL 99 (110)
T ss_dssp ETTTEEECSCCGGGHHHHHHHTTTTSCCCGGG
T ss_pred ECCCCEEECCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 27987794799999999999999889673025
Done!