Query T0631 AaR89, , 303 residues
Match_columns 303
No_of_seqs 121 out of 1256
Neff 7.1
Searched_HMMs 15564
Date Thu Jul 22 15:04:45 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0631.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0631.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1stza1 a.4.5.51 (A:14-100) He 30.7 15 0.00098 14.5 4.2 77 189-287 4-80 (87)
2 d1bxya_ d.59.1.1 (A:) Prokaryo 17.6 17 0.0011 14.1 0.4 46 183-228 11-57 (60)
3 d1bxya_ d.59.1.1 (A:) Prokaryo 15.2 22 0.0014 13.6 0.4 46 183-228 11-57 (60)
4 d1ny8a_ d.52.6.1 (A:) Hypothet 12.9 36 0.0023 12.3 1.0 21 184-204 44-64 (97)
5 d1m2da_ c.47.1.11 (A:) Thiored 12.5 38 0.0025 12.1 1.7 29 264-292 66-95 (101)
6 d2zjrw1 d.59.1.1 (W:1-55) Prok 12.0 21 0.0013 13.7 -0.4 44 184-227 9-53 (55)
7 d1pp0a_ d.103.1.1 (A:) Volvato 11.9 40 0.0026 12.0 2.0 32 112-144 27-58 (194)
8 d1ny8a_ d.52.6.1 (A:) Hypothet 11.8 40 0.0026 12.0 1.0 21 184-204 44-64 (97)
9 d2gycx1 d.59.1.1 (X:3-58) Prok 11.4 12 0.00078 15.0 -1.8 44 184-227 10-54 (56)
10 d1iyjb2 a.171.1.1 (B:2761-2897 10.2 31 0.002 12.6 0.0 16 189-204 26-41 (137)
No 1
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=30.69 E-value=15 Score=14.45 Aligned_cols=77 Identities=16% Similarity=0.243 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCE
Q ss_conf 99999999999987233001377899999987550378657989899999999984478775579995233476665863
Q T0631 189 RNQQAYLKAIIGKVIARETLTNPVTISNMVSAVSPFVSVDKDFDAAAIGSLALSMKDVRAQDTVMFTLPTLGTGTSPDGQ 268 (303)
Q Consensus 189 ~RQq~vl~al~~k~~s~~~~~~~~kl~~l~~~~~~~~~tdtnl~~~~l~~l~~~~~~~~~~~i~~~tlP~~~~~~~~~g~ 268 (303)
.||++++.++++.....+ .|.....+.+.. ..++|+..+...+..+.... =+. -|. ...|
T Consensus 4 ~Rq~~IL~~Ive~y~~~g---~Pv~s~~i~~~~------~l~~S~aTIRn~m~~LE~~G--~l~---~~h-----~s~G- 63 (87)
T d1stza1 4 DRQRKVLYCIVREYIENK---KPVSSQRVLEVS------NIEFSSATIRNDMKKLEYLG--YIY---QPH-----TSAG- 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHHC---SCBCHHHHHHHS------CCCSCHHHHHHHHHHHHHTT--SEE---CCS-----SCSC-
T ss_pred HHHHHHHHHHHHHHHHCC---CCCCHHHHHHHH------CCCCCHHHHHHHHHHHHHCC--CCC---CCC-----CCCC-
T ss_conf 899999999999999809---846799999870------88989899999999999878--624---888-----7787-
Q ss_pred EEEEECHHHHHHHHHHHHC
Q ss_conf 7998387999999999863
Q T0631 269 SIVLADTTAIADVTAALAK 287 (303)
Q Consensus 269 ~~~~~d~~~~~~l~~~l~~ 287 (303)
..|.....+-.++.+..
T Consensus 64 --riPT~~g~r~yv~~ll~ 80 (87)
T d1stza1 64 --RIPTDKGLRFYYEEMLK 80 (87)
T ss_dssp --BEECHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHCC
T ss_conf --76058899999999726
No 2
>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]} SCOP: d1nkwx_ d1p86x_
Probab=17.60 E-value=17 Score=14.13 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHCEEEC
Q ss_conf 5689999999999999-998723300137789999998755037865
Q T0631 183 GDYQRVRNQQAYLKAI-IGKVIARETLTNPVTISNMVSAVSPFVSVD 228 (303)
Q Consensus 183 ~D~~R~~RQq~vl~al-~~k~~s~~~~~~~~kl~~l~~~~~~~~~td 228 (303)
|..++...|+..+.+| ++|.-+.-...+-+.+.++++.+...+.++
T Consensus 11 s~ig~~~~~r~tl~~LgL~k~~~~v~~~~tp~~~GmI~kVkhLV~ve 57 (60)
T d1bxya_ 11 SPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVE 57 (60)
T ss_dssp CCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEE
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEE
T ss_conf 77899888999998708874684689708967877997644205454
No 3
>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]}
Probab=15.21 E-value=22 Score=13.58 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHCEEEC
Q ss_conf 5689999999999999-998723300137789999998755037865
Q T0631 183 GDYQRVRNQQAYLKAI-IGKVIARETLTNPVTISNMVSAVSPFVSVD 228 (303)
Q Consensus 183 ~D~~R~~RQq~vl~al-~~k~~s~~~~~~~~kl~~l~~~~~~~~~td 228 (303)
|-.++...|+..+.+| ++|..+.-...+-+.+..+++.+...++++
T Consensus 11 S~iG~~~~~k~tl~~LGL~k~~~~v~~~~tp~i~Gmi~kVkhLV~Ve 57 (60)
T d1bxya_ 11 SPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVE 57 (60)
T ss_dssp CCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEE
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHEEEEE
T ss_conf 88999989999999819997999899579988988998411246999
No 4
>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}
Probab=12.87 E-value=36 Score=12.26 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 689999999999999998723
Q T0631 184 DYQRVRNQQAYLKAIIGKVIA 204 (303)
Q Consensus 184 D~~R~~RQq~vl~al~~k~~s 204 (303)
+..|++|||.|..+|-..+.+
T Consensus 44 g~s~i~RHr~Vy~~L~~~i~~ 64 (97)
T d1ny8a_ 44 GMSRVKKQQTVYGPLMEYIAD 64 (97)
T ss_dssp SSCHHHHHHHHHTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCC
T ss_conf 898779999999999887435
No 5
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
Probab=12.50 E-value=38 Score=12.13 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=22.5
Q ss_pred CCCCEEEEEECHHHHHHHHHH-HHCCCCCC
Q ss_conf 658637998387999999999-86388740
Q T0631 264 SPDGQSIVLADTTAIADVTAA-LAKDQVDA 292 (303)
Q Consensus 264 ~~~g~~~~~~d~~~~~~l~~~-l~~~~~~~ 292 (303)
.++|.||-.++++.+.+++.. |.++++-+
T Consensus 66 ~P~~~~Y~~v~~e~v~~Iv~~hl~~g~~ve 95 (101)
T d1m2da_ 66 YPDGVWYGQVKPEDVDEIVEKHLKGGEPVE 95 (101)
T ss_dssp ETTTEEECSCCGGGHHHHHHHTTTTSCCCG
T ss_pred CCCCCEEECCCHHHHHHHHHHHHHCCCCCH
T ss_conf 178327816999999999999998893826
No 6
>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30 {Deinococcus radiodurans [TaxId: 1299]}
Probab=12.05 E-value=21 Score=13.69 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHCEEE
Q ss_conf 689999999999999-99872330013778999999875503786
Q T0631 184 DYQRVRNQQAYLKAI-IGKVIARETLTNPVTISNMVSAVSPFVSV 227 (303)
Q Consensus 184 D~~R~~RQq~vl~al-~~k~~s~~~~~~~~kl~~l~~~~~~~~~t 227 (303)
-.++..+|+..+++| ++|..+.-...+-+.+.++++.+...+.+
T Consensus 9 ~iG~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kV~hLV~V 53 (55)
T d2zjrw1 9 VIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEV 53 (55)
T ss_dssp STTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCC
T ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHEEEE
T ss_conf 889998999999992999799989947997898899850431798
No 7
>d1pp0a_ d.103.1.1 (A:) Volvatoxin A2 {Volvariella volvacea, different isoforms [TaxId: 36659]}
Probab=11.90 E-value=40 Score=12.02 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=24.9
Q ss_pred HHCCCCCEEEEECHHHHHHHHHHCCCEEEECCC
Q ss_conf 718874527898158999999721881552275
Q T0631 112 LLQQRIDHVAMIDFQGFKGLTDALGGVEVDVRI 144 (303)
Q Consensus 112 llgi~Id~yv~v~~~~f~~lVD~lGGV~V~v~~ 144 (303)
..... ...-.+|+.+|+.++|-.+|.|+...+
T Consensus 27 ~~~le-~d~~~fdwp~fk~~id~y~g~Dl~f~~ 58 (194)
T d1pp0a_ 27 YLKLE-QDKAYFDWPGFKTAIDNYTGEDLSFDK 58 (194)
T ss_dssp TEEEE-TTEEEECHHHHHHHHHTCCCSSEEEEE
T ss_pred HHHHC-CCCCCCCCHHHHHHHHHCCCCEEEHHH
T ss_conf 61012-676546672178887514786002101
No 8
>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}
Probab=11.78 E-value=40 Score=12.00 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 689999999999999998723
Q T0631 184 DYQRVRNQQAYLKAIIGKVIA 204 (303)
Q Consensus 184 D~~R~~RQq~vl~al~~k~~s 204 (303)
+..|++|||.|..+|-+.+.+
T Consensus 44 g~s~v~RHr~Vy~~L~~~i~~ 64 (97)
T d1ny8a_ 44 GMSRVKKQQTVYGPLMEYIAD 64 (97)
T ss_dssp SSCHHHHHHHHHTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCC
T ss_conf 998899999999999998747
No 9
>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]}
Probab=11.40 E-value=12 Score=15.01 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHCCCCCCCHHHHHHHHHHHHHCEEE
Q ss_conf 689999999999999-99872330013778999999875503786
Q T0631 184 DYQRVRNQQAYLKAI-IGKVIARETLTNPVTISNMVSAVSPFVSV 227 (303)
Q Consensus 184 D~~R~~RQq~vl~al-~~k~~s~~~~~~~~kl~~l~~~~~~~~~t 227 (303)
..++...|+..+++| ++|..+.-...+-+.+..+++.+...+++
T Consensus 10 ~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGmi~kVkhLV~v 54 (56)
T d2gycx1 10 AIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKV 54 (56)
T ss_dssp SSSCCTTHHHHHHHHTCCSTTCEEEECCCTTHHHHHHHTTTTEEC
T ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHEEEE
T ss_conf 899898999999980999799989957998898899963542697
No 10
>d1iyjb2 a.171.1.1 (B:2761-2897) BRCA2 tower domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.22 E-value=31 Score=12.63 Aligned_cols=16 Identities=38% Similarity=0.383 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999998723
Q T0631 189 RNQQAYLKAIIGKVIA 204 (303)
Q Consensus 189 ~RQq~vl~al~~k~~s 204 (303)
.+|+..+.+|+.|+..
T Consensus 26 ~~q~k~lE~L~skiQ~ 41 (137)
T d1iyjb2 26 EAQQKKLEALFTKVHT 41 (137)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
Done!