Query T0632 BhR199, , 168 residues
Match_columns 168
No_of_seqs 159 out of 2734
Neff 8.0
Searched_HMMs 11830
Date Thu Jul 22 15:03:54 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0632.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0632.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03061 4HBT: Thioesterase su 99.4 1.3E-12 1.1E-16 82.8 8.6 78 78-155 1-79 (79)
2 PF01643 Acyl-ACP_TE: Acyl-ACP 97.9 0.00013 1.1E-08 40.6 12.3 102 65-166 5-116 (249)
3 PF09500 YiiD_Cterm: Putative 97.3 0.00019 1.6E-08 39.6 5.8 58 106-165 14-84 (84)
4 PF01575 MaoC_dehydratas: MaoC 95.9 0.017 1.4E-06 29.4 7.5 65 79-147 51-116 (122)
5 PF07977 FabA: FabA-like domai 95.0 0.066 5.6E-06 26.2 9.7 48 110-158 86-138 (138)
6 PF02551 Acyl_CoA_thio: Acyl-C 94.0 0.047 4E-06 27.0 5.5 50 109-158 76-127 (131)
7 PF10648 Gmad2: Immunoglobulin 56.8 4.2 0.00035 16.7 5.2 46 113-160 1-49 (88)
8 PF11141 DUF2914: Protein of u 45.1 6.6 0.00055 15.7 4.4 40 120-159 24-63 (66)
9 PF10144 SMP_2: Bacterial viru 32.7 11 0.00089 14.6 2.6 39 61-99 138-179 (213)
10 PF11906 DUF3426: Protein of u 12.4 30 0.0025 12.2 7.5 47 113-159 55-106 (149)
No 1
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 2hbo_A 2ov9_C 2pim_A 3dkz_B 3e29_A 3f1t_B 3e8p_C 3hdu_B 2qwz_C 1q4s_B ....
Probab=99.35 E-value=1.3e-12 Score=82.76 Aligned_cols=78 Identities=29% Similarity=0.578 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEEECCCC-CCEEEEEEEEEEECCEEEEEEEEEEECCCCEEE
Q ss_conf 860489999999999999888623786300210000001100023-520457789996478799999999847998999
Q T0632 78 LNMVHGGITATLLDTAMGQMVNRQLPDGQSAVTSELNIHYVKPGM-GTYLRAVASIVHQGKQRIVVEGKVYTDQGETVA 155 (168)
Q Consensus 78 ~G~vHGG~~~~l~D~~~g~a~~~~~~~~~~~vt~~l~i~fl~p~~-g~~i~a~a~v~~~g~~~~~~~~~i~d~~g~lva 155 (168)
+|++|||.++.++|.+.+.++....+.+...++++++++|++|++ ++++++++++++.|++...++.++++++++++|
T Consensus 1 ~G~v~~g~~~~~~e~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (79)
T PF03061_consen 1 MGHVHGGVYLAWFEEARGEFLNSFGPSGWGVVVVSLNIDFLRPVRPGDRLTVRARVIRVGRKSVFVEVEIWREDGQVVA 79 (79)
T ss_dssp TSSB-HHHHHHHHHHHHHHHHHHHHTSTEEEEEEEEEEEESS-B-TTSEEEEEEEEEEEESSEEEEEEEEEEETSEEEE
T ss_pred CCEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCEEEEEEEEEEECCCCEEC
T ss_conf 9899699999999999999999856668624788999999211589979999999999898899999999999985989
No 2
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This family is found in plants. It consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolyzing an acyl group on a fatty acid .; GO: 0000036 acyl carrier activity, 0006633 fatty acid biosynthetic process; PDB: 2own_A 2ess_A.
Probab=97.93 E-value=0.00013 Score=40.56 Aligned_cols=102 Identities=12% Similarity=0.066 Sum_probs=81.8
Q ss_pred EEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC--------CCCCCHHHEEEEEEEEECCCC-CCEEEEEEEEEEE
Q ss_conf 9998746688188860489999999999999888623--------786300210000001100023-5204577899964
Q T0632 65 EVRLPIGPLVNNPLNMVHGGITATLLDTAMGQMVNRQ--------LPDGQSAVTSELNIHYVKPGM-GTYLRAVASIVHQ 135 (168)
Q Consensus 65 ~~~~~~~~~~~n~~G~vHGG~~~~l~D~~~g~a~~~~--------~~~~~~~vt~~l~i~fl~p~~-g~~i~a~a~v~~~ 135 (168)
+-+++++..-+++.|.+.=..++.++-.+++.-+... ...+...+.....+.|.++.. ++.|++...+...
T Consensus 5 ~~~~~V~~~e~d~~g~~~~~~l~~~~qd~a~~h~~~lG~~~~~~l~~~~~~Wvl~~~~i~i~r~p~~~e~v~v~Tw~~~~ 84 (249)
T PF01643_consen 5 EEEYRVRYYEVDPDGRLKLSALLNYLQDAATNHSESLGFGIEDFLQKRGLAWVLSRYHIEIERYPRWGEKVTVRTWPYGI 84 (249)
T ss_dssp EEEEE--GGGB-----B-HHHHHHHHHHHHHHHHHH----HHH-HHCTTEEEEEEEEEEEESS---TT-EEEEEEEEEEE
T ss_pred EEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCEEEEEEEEEEEEEECCCCCCEEEEEEEEEEC
T ss_conf 99999726988899969999999999999999999708873234875794999998999996358999889999999557
Q ss_pred CCEEEEEEEEEEE-CCCCEEEEEEEEEEEECC
Q ss_conf 7879999999984-799899999999999647
Q T0632 136 GKQRIVVEGKVYT-DQGETVAMGTGSFFVLRS 166 (168)
Q Consensus 136 g~~~~~~~~~i~d-~~g~lva~~~~t~~v~~~ 166 (168)
++..+.-+..++| ++|+++|.+.+.|+.+..
T Consensus 85 ~~~~~~R~f~i~d~~~G~~ia~a~s~wv~id~ 116 (249)
T PF01643_consen 85 KRFFAYRDFEIYDSEDGKLIARASSIWVLIDL 116 (249)
T ss_dssp -SSEEEEEEEEE------EEEEEEEEEEEEET
T ss_pred CCCEEEEEEEEEECCCCCEEEEEEEEEEEEEC
T ss_conf 99879999999987999799999999999981
No 3
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); PDB: 1t82_A.
Probab=97.30 E-value=0.00019 Score=39.63 Aligned_cols=58 Identities=36% Similarity=0.503 Sum_probs=48.7
Q ss_pred CHHHEEEEEEEEECCCCCCEEEEEEEEE-------------EECCEEEEEEEEEEECCCCEEEEEEEEEEEEC
Q ss_conf 0021000000110002352045778999-------------64787999999998479989999999999964
Q T0632 106 QSAVTSELNIHYVKPGMGTYLRAVASIV-------------HQGKQRIVVEGKVYTDQGETVAMGTGSFFVLR 165 (168)
Q Consensus 106 ~~~vt~~l~i~fl~p~~g~~i~a~a~v~-------------~~g~~~~~~~~~i~d~~g~lva~~~~t~~v~~ 165 (168)
...|-.+-+|+|++|+.++ ++|++... +.||....+++++++++ +.+|..+|+|++++
T Consensus 14 g~IVi~ds~IrY~~PV~~d-~~A~~~~~~~~~~~~fl~~L~r~gkari~l~v~i~~~~-~~aa~f~G~yV~lp 84 (84)
T PF09500_consen 14 GDIVIADSQIRYLKPVTGD-PVAVCSLPEPESWEGFLSRLARGGKARIKLEVEIYCGD-EPAAEFTGRYVVLP 84 (84)
T ss_dssp --EEEEEEEEEE-S---S---EEEE--------S---GGGG----EEE---EEEE-----EEEEEE-EEEE--
T ss_pred CCEEEEECCEEECCCCCCC-EEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEEEEECC-EEEEEEEEEEEEEC
T ss_conf 6399995854876888999-08999665232146778998627845899999996699-99999999999709
No 4
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme . The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase .; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 2b3n_A 2b3m_A 1pn4_D 1pn2_D 1s9c_D 2vkz_H 2uv8_I 3exz_E 2c2i_B 1q6w_L ....
Probab=95.86 E-value=0.017 Score=29.40 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEEECCCC-CCEEEEEEEEEEECCEEEEEEEEEE
Q ss_conf 60489999999999999888623786300210000001100023-5204577899964787999999998
Q T0632 79 NMVHGGITATLLDTAMGQMVNRQLPDGQSAVTSELNIHYVKPGM-GTYLRAVASIVHQGKQRIVVEGKVY 147 (168)
Q Consensus 79 G~vHGG~~~~l~D~~~g~a~~~~~~~~~~~vt~~l~i~fl~p~~-g~~i~a~a~v~~~g~~~~~~~~~i~ 147 (168)
-++||..+++++......... ..........+++|++|+. |++|+++.++...........++++
T Consensus 51 ~i~hG~~~~a~~~~~~~~~~~----~~~~~~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~v~~~ 116 (122)
T PF01575_consen 51 PIAHGMLTLALVAGLLAQWLG----GNPGARLGSQSVRFRRPVYPGDTLTVTSEVVDKRPGKGVVTVTVR 116 (122)
T ss_dssp -B----HHHHHHHHHHHHHHS----TTECEEEEEEEEEESS--BSS-EEEEEEEEEEEEEEEEEEEEEEE
T ss_pred EEEEHHHHHHHHHHHHHHHCC----CCCCEEEEEEEEEECCCCCCCCEEEEEEEEEEEEECCCCEEEEEE
T ss_conf 077217999999999888735----765137899999984884789999999999988986772799999
No 5
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes . Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 2glp_B 2gll_E 2glv_K 2glm_C 3dp3_A 3dp0_E 3b7j_B 3cf9_A 3d04_F 3doz_C ....
Probab=94.97 E-value=0.066 Score=26.25 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=39.9
Q ss_pred EEEEEEEEECCC-CCC-EEEEEEEEEE---ECCEEEEEEEEEEECCCCEEEEEE
Q ss_conf 000000110002-352-0457789996---478799999999847998999999
Q T0632 110 TSELNIHYVKPG-MGT-YLRAVASIVH---QGKQRIVVEGKVYTDQGETVAMGT 158 (168)
Q Consensus 110 t~~l~i~fl~p~-~g~-~i~a~a~v~~---~g~~~~~~~~~i~d~~g~lva~~~ 158 (168)
..--+++|.+|+ +|+ .++.+.++.+ ..+.....+++++. +|++|+++.
T Consensus 86 ~~~~~~kf~~~v~Pgd~~l~~~v~i~~~~~~~~~~~~~~~~~~v-~g~~v~~~~ 138 (138)
T PF07977_consen 86 GGIRSAKFRRPVRPGDKTLTLEVKITRVRRSDRGMVIFDGTATV-DGEIVATAE 138 (138)
T ss_dssp EEEEEEEE-S-B-TT--EEEEEEEEEEEEEECTCEEEEEEEEEE-TTEEEEEEE
T ss_pred CCCCEEEEEEEECCCCEEEEEEEEEEEEECCCCCEEEEEEEEEE-CCEEEEEEC
T ss_conf 65557999200139997999999999953067869999999999-999999979
No 6
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 This is a family of acyl-CoA thioesterases of unknown function that hydrolyse a range of acyl-CoA thioesters .; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1c8u_A 1tbu_D.
Probab=93.98 E-value=0.047 Score=27.01 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=43.9
Q ss_pred HEEEEEEEEECCCC-CCEEEEEEEEEEECCEEEEEEEEEE-ECCCCEEEEEE
Q ss_conf 10000001100023-5204577899964787999999998-47998999999
Q T0632 109 VTSELNIHYVKPGM-GTYLRAVASIVHQGKQRIVVEGKVY-TDQGETVAMGT 158 (168)
Q Consensus 109 vt~~l~i~fl~p~~-g~~i~a~a~v~~~g~~~~~~~~~i~-d~~g~lva~~~ 158 (168)
+++|=++.|.+|.. .+++..+.+....+...+.++++++ +++|++||...
T Consensus 76 ~SLDHsiwFH~~~~~~~Wlly~~~s~~a~~~R~l~~G~i~~~~~G~LVaS~~ 127 (131)
T PF02551_consen 76 ASLDHSIWFHRPFDADDWLLYEQESPRAGNGRGLVRGRIFDTRDGRLVASVV 127 (131)
T ss_dssp EEEEEEEEE-S---TTS-EEEEEEE-EEBTTB-EEE-EEEEEETTEEEEEEE
T ss_pred EECCEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEE
T ss_conf 6213348991788899999999987764688448841799889997999995
No 7
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination
Probab=56.84 E-value=4.2 Score=16.73 Aligned_cols=46 Identities=26% Similarity=0.436 Sum_probs=25.9
Q ss_pred EEEEEECCCCCCEEEEEEEEEEECCEEE---EEEEEEEECCCCEEEEEEEE
Q ss_conf 0001100023520457789996478799---99999984799899999999
Q T0632 113 LNIHYVKPGMGTYLRAVASIVHQGKQRI---VVEGKVYTDQGETVAMGTGS 160 (168)
Q Consensus 113 l~i~fl~p~~g~~i~a~a~v~~~g~~~~---~~~~~i~d~~g~lva~~~~t 160 (168)
++|....|.+++.+.- .+.-.|+... .+..+|.|.+|++++.+..+
T Consensus 1 ~~I~v~~P~pg~~V~~--~~~v~G~a~~FE~~v~~~i~d~~g~vl~eg~~~ 49 (88)
T PF10648_consen 1 MNIWVTSPAPGDVVSS--PFKVSGKARVFEGTVNIRIRDGHGEVLAEGHVT 49 (88)
T ss_pred CCEEECCCCCCCCCCC--CEEEEEEEEEECEEEEEEEECCCCCEEEEEEEE
T ss_conf 9608727999997175--489999988200089999986998598881388
No 8
>PF11141 DUF2914: Protein of unknown function (DUF2914)
Probab=45.11 E-value=6.6 Score=15.69 Aligned_cols=40 Identities=18% Similarity=0.057 Sum_probs=28.3
Q ss_pred CCCCCEEEEEEEEEEECCEEEEEEEEEEECCCCEEEEEEE
Q ss_conf 0235204577899964787999999998479989999999
Q T0632 120 PGMGTYLRAVASIVHQGKQRIVVEGKVYTDQGETVAMGTG 159 (168)
Q Consensus 120 p~~g~~i~a~a~v~~~g~~~~~~~~~i~d~~g~lva~~~~ 159 (168)
++.|+.-+.-+...-.......+.++|.+++|++++...-
T Consensus 24 ~v~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F 63 (66)
T PF11141_consen 24 PVRGPRWRTWSSKRNFPDQKGKWRVEVVDEDGQVLGSLEF 63 (66)
T ss_pred ECCCCCEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEE
T ss_conf 1479963888980568999868899999799989999999
No 9
>PF10144 SMP_2: Bacterial virulence factor haemolysin
Probab=32.72 E-value=11 Score=14.60 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=18.5
Q ss_pred CCEEEEEEEECHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9899999874668818---88604899999999999998886
Q T0632 61 DGRFEVRLPIGPLVNN---PLNMVHGGITATLLDTAMGQMVN 99 (168)
Q Consensus 61 ~g~~~~~~~~~~~~~n---~~G~vHGG~~~~l~D~~~g~a~~ 99 (168)
-|++++++.-..-... .....|=..++.++-.+.|....
T Consensus 138 ~GflRITld~~~~~~~~~~~~~~~~~l~lmLllall~G~lL~ 179 (213)
T PF10144_consen 138 LGFLRITLDTQQLQAESKQVDQLMNQLRLMLLLALLIGILLA 179 (213)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 237999966288762899999999999999999999999999
No 10
>PF11906 DUF3426: Protein of unknown function (DUF3426)
Probab=12.35 E-value=30 Score=12.20 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=32.9
Q ss_pred EEEEEECCCC--CCEEEEEEEEEEECCE---EEEEEEEEEECCCCEEEEEEE
Q ss_conf 0001100023--5204577899964787---999999998479989999999
Q T0632 113 LNIHYVKPGM--GTYLRAVASIVHQGKQ---RIVVEGKVYTDQGETVAMGTG 159 (168)
Q Consensus 113 l~i~fl~p~~--g~~i~a~a~v~~~g~~---~~~~~~~i~d~~g~lva~~~~ 159 (168)
+.-..+++.. ++.+.+.+++...++. .-.++.+++|.+|++++.-..
T Consensus 55 i~~~~~~~~~~~~~~~~i~g~l~N~~~~~~~~P~l~l~L~D~~g~~v~~r~~ 106 (149)
T PF11906_consen 55 IESSSLRQHPNGGDVLVISGTLRNRADFPQAWPALELTLTDAQGQPVARRVF 106 (149)
T ss_pred EEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 8600777527889679999999938987534745999999899999999997
Done!