Query T0633 cgr109a , , 462 residues
Match_columns 462
No_of_seqs 336 out of 3461
Neff 7.6
Searched_HMMs 11830
Date Thu Jul 22 15:42:05 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0633.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0633.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00753 Lactamase_B: Metallo- 99.7 8.3E-18 7E-22 135.0 10.8 174 9-192 2-194 (194)
2 PF00581 Rhodanese: Rhodanese- 99.6 2E-15 1.7E-19 119.2 8.2 84 375-458 8-113 (113)
3 PF00581 Rhodanese: Rhodanese- 99.4 3.9E-13 3.3E-17 103.8 7.8 95 270-364 1-112 (113)
4 PF02112 PDEase_II: cAMP phosp 97.8 4.1E-05 3.4E-09 50.3 8.3 129 13-143 17-217 (335)
5 PF04273 DUF442: Putative phos 95.2 0.027 2.3E-06 31.6 6.6 30 408-439 78-107 (110)
6 PF08704 GCD14: tRNA methyltra 89.4 0.52 4.4E-05 23.0 8.2 143 178-365 97-242 (309)
7 PF03853 YjeF_N: YjeF-related 85.9 0.6 5E-05 22.6 5.1 103 322-430 27-148 (173)
8 PF05706 CDKN3: Cyclin-depende 84.8 0.3 2.5E-05 24.6 3.1 92 338-443 61-160 (207)
9 PF00782 DSPc: Dual specificit 72.8 1.5 0.00013 19.9 3.6 30 415-444 70-102 (133)
10 PF00072 Response_reg: Respons 70.2 2.5 0.00021 18.5 9.4 98 327-447 1-98 (112)
11 PF03162 Y_phosphatase2: Tyros 68.8 2.6 0.00022 18.3 5.1 12 323-334 90-101 (164)
12 PF06962 rRNA_methylase: Putat 68.2 1.1 9.2E-05 20.8 2.1 39 153-195 57-99 (140)
13 PF07755 DUF1611: Protein of u 63.5 2.1 0.00018 18.9 2.8 65 272-354 77-147 (301)
14 PF10727 Rossmann-like: Rossma 59.5 3.9 0.00033 17.1 6.1 103 326-443 11-120 (127)
15 PF06415 iPGM_N: BPG-independe 57.2 2.2 0.00018 18.8 2.0 44 36-79 17-66 (223)
16 PF09992 DUF2233: Predicted pe 45.3 6.4 0.00054 15.7 3.8 43 321-363 148-192 (211)
17 PF01148 CTP_transf_1: Cytidyl 44.9 5.3 0.00045 16.2 2.4 25 169-193 212-236 (259)
18 PF00102 Y_phosphatase: Protei 40.8 7.5 0.00064 15.2 3.0 30 96-125 92-121 (235)
19 PF05724 TPMT: Thiopurine S-me 40.7 7.6 0.00064 15.2 2.7 14 268-281 167-180 (216)
20 PF00202 Aminotran_3: Aminotra 39.9 7.8 0.00066 15.1 5.5 17 12-31 5-21 (339)
21 PF03848 TehB: Tellurite resis 35.9 8.9 0.00076 14.7 4.7 26 28-53 34-59 (192)
22 PF00549 Ligase_CoA: CoA-ligas 32.7 10 0.00085 14.4 4.0 12 339-350 127-138 (153)
23 PF02302 PTS_IIB: PTS system, 32.7 10 0.00085 14.4 2.5 25 327-351 2-31 (90)
24 PF05212 DUF707: Protein of un 30.9 8.3 0.0007 14.9 1.5 20 173-195 58-77 (294)
25 PF02829 3H: 3H domain; Inter 28.7 12 0.00099 13.9 4.4 77 271-349 11-96 (98)
No 1
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases a number of other proteins contain this domain . These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 2cg2_A 2cg3_A 2cfz_A 2cfu_A 2bib_A 1wra_A 3esh_C 1p9e_A 2p4z_A 2q0j_B ....
Probab=99.74 E-value=8.3e-18 Score=135.00 Aligned_cols=174 Identities=25% Similarity=0.264 Sum_probs=118.4
Q ss_pred CCCCEEEEEEEECCCCEEEEEECCCCHHHHHH----HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 88400358898679986999818779899999----99961892799997388705566899999970982887575631
Q T0633 9 EGLAQASYFIGCQREGKAIVVDARRDIQTYLD----LAAKNNMVISAVTETHIHADYLSGTRELAAATGAEIFLSGEGGA 84 (462)
Q Consensus 9 ~~~~~~sYli~~~~~~~a~iIDP~~d~~~~~~----~~~~~g~~i~~Il~TH~H~DH~~g~~~l~~~~~a~i~~~~~~~~ 84 (462)
+..++|||||..+ +..++||||.+...... ..+....+|++|++||.|.||++|+..+.+.....++.......
T Consensus 2 ~~~~~n~~li~~~--~~~iliD~g~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~gg~~~l~~~~~~~~~~~~~~~~ 79 (194)
T PF00753_consen 2 GERGGNSYLIEGD--GGRILIDTGPGSRFQLKLLLALLGIDPSDIDAVILTHAHPDHIGGLPELLEARPAAVVYAPADAA 79 (194)
T ss_dssp SSEEEEEEEEEET--SEEEEES-SSGHHHHHHHHHHHHHHTGGGEEEEEESSSSTTTHTTHHHHHHHHTEEEEEEHHHHH
T ss_pred CCCCEEEEEEEEC--CEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCHHH
T ss_conf 9866799999979--92999989997145666544554305787788998998743453001221222231687220010
Q ss_pred CC---------------CCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEECCEECCCCCC
Q ss_conf 15---------------677786673688888888879999877899703569998357777778788857554268826
Q T0633 85 DW---------------QYGFTGTTLMHNSTIKLGNITITAKHTPGHTPEHLSFLITDGAVSKDPGFMLSGDFVFVGDVG 149 (462)
Q Consensus 85 ~~---------------~~~~~~~~~~dg~~i~~g~~~l~vi~tPGHT~~si~~~~~d~~~~~~~~~lftGDtlf~g~vG 149 (462)
.. ...........++.+..+...+.+..+|+|+++++++...+ .+++||||+++.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~vlf~GD~~~~~~~~ 153 (194)
T PF00753_consen 80 PLISLMLRDEASRMGQADPPPPPPVDEDGDQIGDGGVFIFVFHHPGHTPGGLVVYLPG------GKVLFTGDTLFSPGEL 153 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHESEEEEEEEEEEEEEEEEEEEEEEETTSSSTTEEEEEETT------TTEEEEGTGSSSTTHH
T ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCEEEEECCC------CEEEECCCCCCCCCCC
T ss_conf 0000000001111221111112111234421000100112330378775217984377------4587813894557855
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 7677887766554420018999999999974089973997368
Q T0633 150 RPDLLDEAAGGVDTRFAGAQQLFHSLKEQFLALPDHIQVYPGH 192 (462)
Q Consensus 150 R~dl~~~~~~~~~~~~~~a~~l~~Sl~~~~~~L~~~~~i~PgH 192 (462)
..+.................+...++ +++..++++++| |||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~vi-~~H 194 (194)
T PF00753_consen 154 MVDDDYPPRGFRTRYGSSWAQSLEAL-EKLRALDPEVVI-PGH 194 (194)
T ss_dssp SSSBCHCHHHHTTSCHTHHHHHHHHH-HHHHTSHTSEEE-ESS
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHH-HHHHCCCCCEEE-ECC
T ss_conf 33432111222357816899999999-998679999999-494
No 2
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see ) shares evolutionary relationship with a large family of proteins , including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see ). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases .; PDB: 3d1p_A 2jtr_A 2jtq_A 2jts_A 2fsx_A 1tq1_A 3fnj_F 3flh_B 1yt8_A 2eg4_A ....
Probab=99.58 E-value=2e-15 Score=119.15 Aligned_cols=84 Identities=32% Similarity=0.545 Sum_probs=70.6
Q ss_pred HHCCCCCEEEEECCHHHHHCCCCCCCEECCHHH----------------HHHHHHHCCCCCEEEEECCCCHHHHHHHHH-
Q ss_conf 943799589981684898248898703367689----------------999997079987799987971689999999-
Q T0633 375 LAETNYDALIDIRAKSEFAAGSIPGAQQLSGGS----------------AMWRLNELPAGGTLVTFCQSGARNTVVANA- 437 (462)
Q Consensus 375 l~~~~~~~ilDvR~~~E~~~GhIpGAi~ip~~~----------------l~~~l~~l~~dk~ivv~C~sG~RS~~aa~~- 437 (462)
+.+..+.+|||||++.||+.||||||+|+|+.. +......++++++||+||.+|.|+..++..
T Consensus 8 ~~~~~~~~liDvR~~~e~~~ghI~gsv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~g~~~~~~~~~~ 87 (113)
T PF00581_consen 8 LLEDPNVVLIDVRPPEEYEEGHIPGSVNIPWDSLDPSEDAIFPEKLAEELEELGAGLDKDKPIVFYCSGGWRSSFAAAAL 87 (113)
T ss_dssp HHTTTTEEEEEESSHHHHHHSBBTTEEEEEGGGGSSSSTCHHHHHHHHHHHHHHHHSTTTSEEEEESSSSSHHHHHHHHH
T ss_pred HHCCCCEEEEEECCHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 63088969999189899964938898984403223454322013444543110012468986999967875554037789
Q ss_pred ----HHHCCC-CEEEECCCHHHHHHC
Q ss_conf ----996699-589955987999728
Q T0633 438 ----LRRAGF-TVIELEGSYAAWEKS 458 (462)
Q Consensus 438 ----L~~~G~-~v~~l~GG~~~W~~a 458 (462)
|+..|| +|+.|.|||.+|.++
T Consensus 88 ~~~~l~~~G~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 88 AAWILRALGYKNVYILDGGFEAWQEE 113 (113)
T ss_dssp HHHHHHHHHHTEEEEEE--HHHHHHH
T ss_pred HHHHHHHCCCCCEEEECCHHHHHHCC
T ss_conf 99999986999889978849998449
No 3
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see ) shares evolutionary relationship with a large family of proteins , including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see ). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases .; PDB: 3d1p_A 2jtr_A 2jtq_A 2jts_A 2fsx_A 1tq1_A 3fnj_F 3flh_B 1yt8_A 2eg4_A ....
Probab=99.39 E-value=3.9e-13 Score=103.83 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=73.6
Q ss_pred CHHHHHHHH-HCCCEEEECCCHHHHHCCCCCEEEECCCCCC-----------HHHHHHHHHHCCCCCCEEEEEECCCHHH
Q ss_conf 889999997-4792798759979985068650776577743-----------5678889850288986189996880068
Q T0633 270 EAEEVVEKL-GSEAVFVDTREQNQVHLGTVVGALNIPRGAK-----------ASNFAAWVIDPQKDAQDLIVLAPDANTA 337 (462)
Q Consensus 270 s~~e~~~~l-~~g~~iIDvR~~~~y~~gHIpGAinip~~~~-----------~~~~~~~l~~~~~~~~~~vvv~~~~~~a 337 (462)
||+++.+++ +.+.+|||+|+..+|..||||||+|+|.... ...+..........+..+|++|.++.++
T Consensus 1 s~~el~~~~~~~~~~liDvR~~~e~~~ghI~gsv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~g~~~ 80 (113)
T PF00581_consen 1 SAEELKQLLEDPNVVLIDVRPPEEYEEGHIPGSVNIPWDSLDPSEDAIFPEKLAEELEELGAGLDKDKPIVFYCSGGWRS 80 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBBTTEEEEEGGGGSSSSTCHHHHHHHHHHHHHHHHSTTTSEEEEESSSSSHH
T ss_pred CHHHHHHHHCCCCEEEEEECCHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf 98999866308896999918989996493889898440322345432201344454311001246898699996787555
Q ss_pred HHHHHH-----HHHHCCCEEEEEHHHHHHHCC
Q ss_conf 999999-----997076102200011111000
Q T0633 338 ADFRDA-----LLRVGIDTVRYFTNSIDGLPT 364 (462)
Q Consensus 338 ~~a~~~-----L~~iG~d~v~~~~gg~~~~~~ 364 (462)
..++.. |..+||+++..+.||+.+|..
T Consensus 81 ~~~~~~~~~~~l~~~G~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 81 SFAAAALAAWILRALGYKNVYILDGGFEAWQE 112 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEE--HHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECCHHHHHHC
T ss_conf 40377899999998699988997884999844
No 4
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together , but 2 enzymes lie apart from the main family and represent a second distinct class : this includes PDEs from Dictyostelium and yeast. There is, in the central part of these enzymes, a highly conserved region which contains three histidines.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=97.83 E-value=4.1e-05 Score=50.34 Aligned_cols=129 Identities=20% Similarity=0.188 Sum_probs=67.0
Q ss_pred EEEEEEEECCCCEEEEEECCCCHHHHHHH---------------------------HHHCCCCEEEEEECCCCCCHHHHH
Q ss_conf 03588986799869998187798999999---------------------------996189279999738870556689
Q T0633 13 QASYFIGCQREGKAIVVDARRDIQTYLDL---------------------------AAKNNMVISAVTETHIHADYLSGT 65 (462)
Q Consensus 13 ~~sYli~~~~~~~a~iIDP~~d~~~~~~~---------------------------~~~~g~~i~~Il~TH~H~DH~~g~ 65 (462)
..+||+.......-+-+|.|--..-|..+ .....-.|..+++||.|.||++|.
T Consensus 17 ~t~~Lv~~~~~~s~~alDagt~l~gi~~l~~~~~~~~~~~~t~p~~~~~~~~~~~~~~~~~~~I~~~~iTH~HLDHi~gl 96 (335)
T PF02112_consen 17 LTAYLVRSISQESFVALDAGTLLSGIPRLTQSKYLSPFIEITVPFSGFDSSNYANAAYILRNRIKHYFITHAHLDHIAGL 96 (335)
T ss_pred CCEEEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHCCC
T ss_conf 20356533476856996462178788888764257987310267434456638889999996301199325751332546
Q ss_pred HHHHHHC------CCEEEECCCCCC----------CCCC-C----------CCCEEECCCCEEEECCEEEEEEE------
Q ss_conf 9999970------982887575631----------1567-7----------78667368888888887999987------
Q T0633 66 RELAAAT------GAEIFLSGEGGA----------DWQY-G----------FTGTTLMHNSTIKLGNITITAKH------ 112 (462)
Q Consensus 66 ~~l~~~~------~a~i~~~~~~~~----------~~~~-~----------~~~~~~~dg~~i~~g~~~l~vi~------ 112 (462)
.-+...+ ..+||..+.... -|+. . ..-..+..++...+...++++.+
T Consensus 97 ~i~s~~~~~~~~~~~~i~gl~~ti~aLk~hiFN~~iWPnf~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~ 176 (335)
T PF02112_consen 97 IINSPSFYNRQSSPKTIYGLPETIEALKNHIFNDVIWPNFSDIGSGPGLPTYKLQDLSPGEWSPLTETTMSVVPNEFPNS 176 (335)
T ss_pred EECCCHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCCCCEEECCCCCC
T ss_conf 42381133145777147536889999998650554467766567632101466566164433325664320010222333
Q ss_pred -----CC-CCCC------CCEEEEEECCCCCCCCCEEEECCEE
Q ss_conf -----78-9970------3569998357777778788857554
Q T0633 113 -----TP-GHTP------EHLSFLITDGAVSKDPGFMLSGDFV 143 (462)
Q Consensus 113 -----tP-GHT~------~si~~~~~d~~~~~~~~~lftGDtl 143 (462)
.| -|+- .|..|++.+... ...++|+|||=
T Consensus 177 ~~i~~~~~~H~~~~~~~~~Ssafli~~~~t--~~~il~fGDte 217 (335)
T PF02112_consen 177 SSITPFPLNHGVPASSPVESSAFLIRDDST--GDEILYFGDTE 217 (335)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCC--CCEEEEEECCC
T ss_conf 322100356666556776632899983899--96699991788
No 5
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 This is a family of largely hypothetical proteins of unknown function. ; PDB: 3gxh_A.
Probab=95.16 E-value=0.027 Score=31.55 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=21.7
Q ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 99999707998779998797168999999999
Q T0633 408 AMWRLNELPAGGTLVTFCQSGARNTVVANALR 439 (462)
Q Consensus 408 l~~~l~~l~~dk~ivv~C~sG~RS~~aa~~L~ 439 (462)
+.+.+.++ ++||.+||+||.||+..+.+-+
T Consensus 78 f~~~l~~~--~~PVL~hCrsG~Rs~~l~~l~~ 107 (110)
T PF04273_consen 78 FAAALEEL--PGPVLAHCRSGTRSSALWALAQ 107 (110)
T ss_dssp HHHHHHHT-----EEEE-SSSHHHHHHHHH--
T ss_pred HHHHHHHC--CCCEEEECCCCHHHHHHHHHHC
T ss_conf 99999848--9999998999802999998860
No 6
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA . ; PDB: 1yb2_A 1o54_A 2yvl_C 2pwy_A 2b25_B 1i9g_A.
Probab=89.36 E-value=0.52 Score=22.96 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=72.3
Q ss_pred HHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
Q ss_conf 97408997399736887423455556774451799974031101211243789999998456767426788875100010
Q T0633 178 QFLALPDHIQVYPGHGAGSPCGKALGAIPSTTVGYEKANAWWAPYLRSDDEAGFVEELLDGQPDAHAYFARMKKQNKQGP 257 (462)
Q Consensus 178 ~~~~L~~~~~i~PgHg~gs~~~~~~~~~~~ttig~e~~~n~~~~~l~~~~~~~Fv~~~~~~~~~~p~~~~~~~~~n~~g~ 257 (462)
++.--|...+|=.|=|+||+. ..--|.-.+.-......-+++|.+...++ |...... .-
T Consensus 97 ~l~i~PG~~VlEaGtGSGslT-----------~~lar~V~p~G~v~t~E~~e~~~~~A~~n-------~~~~gl~---~~ 155 (309)
T PF08704_consen 97 RLDIRPGSRVLEAGTGSGSLT-----------HALARAVGPTGKVYTFEFREERAKKAREN-------FEEHGLD---DN 155 (309)
T ss_dssp HTT--TT--EEEE------HH-----------HHHHHHH-----EEEEESSHHHHHHHHHH-------HHHCCHG---CC
T ss_pred HHCCCCCCEEEEECCCCCHHH-----------HHHHHHHCCCEEEEEECCCHHHHHHHHHH-------HHHHCCC---CC
T ss_conf 849899899999278840999-----------99999848964899976879999999999-------9984899---84
Q ss_pred HHCCCCCCCCCCCHHHHHHHH--HCCCEEEECCCHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC-CCCCEEEEEECCC
Q ss_conf 010245676656889999997--4792798759979985068650776577743567888985028-8986189996880
Q T0633 258 AVLSTLSPLVKLEAEEVVEKL--GSEAVFVDTREQNQVHLGTVVGALNIPRGAKASNFAAWVIDPQ-KDAQDLIVLAPDA 334 (462)
Q Consensus 258 ~~l~~~~~~~~ls~~e~~~~l--~~g~~iIDvR~~~~y~~gHIpGAinip~~~~~~~~~~~l~~~~-~~~~~~vvv~~~~ 334 (462)
.-+ ..+-+.-+-+.+.+ ..+++++|+..|.++- ..+.... .++..++.++..-
T Consensus 156 v~~----~~~Dv~~~gf~~~~~~~~DavfLDlp~PW~~i--------------------~~~~~~L~~~gg~i~~f~P~i 211 (309)
T PF08704_consen 156 VTV----THRDVCKEGFDEELEGDADAVFLDLPDPWEAI--------------------PHAKKALKKPGGRICCFSPCI 211 (309)
T ss_dssp EEE----EES-TTCS------TTSBSEEEEESSSGGGGH--------------------HHHHHHB-ECTEEEEEEESSH
T ss_pred EEE----EECCCCCCCCCCCCCCCCCEEEECCCCHHHHH--------------------HHHHHHHCCCCCEEEEECCCH
T ss_conf 874----52452333666555666898997489989999--------------------999998657996699987989
Q ss_pred HHHHHHHHHHHHHCCCEEEEEHHHHHHHCCC
Q ss_conf 0689999999970761022000111110000
Q T0633 335 NTAADFRDALLRVGIDTVRYFTNSIDGLPTF 365 (462)
Q Consensus 335 ~~a~~a~~~L~~iG~d~v~~~~gg~~~~~~~ 365 (462)
++..++...|...||.++..++--...|...
T Consensus 212 eQv~~~~~aL~~~gf~~i~~~Evl~R~~~v~ 242 (309)
T PF08704_consen 212 EQVQKTVEALREHGFTDIETVEVLLREWEVR 242 (309)
T ss_dssp HHHHHHHHHHCCTTEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEEEEEEE
T ss_conf 9999999999977997207999974787986
No 7
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The C-terminal region of yjeF from Escherichia coli shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Saccharomyces cerevisiae YKL151C and Bacillus subtilis yxkO match the yjeF C-terminal domain but lack this region. The proteins in this group are of unknown function.; PDB: 3d3k_B 3d3j_A 2dg2_F 2o8n_A 1jzt_A 2ax3_A.
Probab=85.93 E-value=0.6 Score=22.56 Aligned_cols=103 Identities=13% Similarity=0.068 Sum_probs=47.1
Q ss_pred CCCCEEEEEECC---CHHHHHHHHHHHHHCCCEEEEEHHHHH-----------HHCCCCCCCCCHHHH-----HCCCCCE
Q ss_conf 898618999688---006899999999707610220001111-----------100001223438999-----4379958
Q T0633 322 KDAQDLIVLAPD---ANTAADFRDALLRVGIDTVRYFTNSID-----------GLPTFVPELISPAEL-----AETNYDA 382 (462)
Q Consensus 322 ~~~~~~vvv~~~---~~~a~~a~~~L~~iG~d~v~~~~gg~~-----------~~~~~~~~~~~~~~l-----~~~~~~~ 382 (462)
.....++++|.. +++.-.+++.|...||+-...+....+ .+.....+....... .-.+...
T Consensus 27 ~~~~~v~vl~G~GNNGGDglv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 106 (173)
T PF03853_consen 27 PKPPRVLVLCGPGNNGGDGLVAARHLAQRGYKVTVFLLGPPEKLSEDARQNLNILEKAGGPIVELEPDEDLSELLEPADL 106 (173)
T ss_dssp TTT-EEEEEE----------HHHHHHHHTTSEEEEEEE-CCSTTSHHHHHHHHHHCCTT--EESSGGGSGGGHHGSCESE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCE
T ss_conf 67997999989998769999999999987993399985787779899999999999779980324552101234666678
Q ss_pred EEEECCHHHHHCCCCCCCEECCHHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 998168489824889870336768999999707998779998797168
Q T0633 383 LIDIRAKSEFAAGSIPGAQQLSGGSAMWRLNELPAGGTLVTFCQSGAR 430 (462)
Q Consensus 383 ilDvR~~~E~~~GhIpGAi~ip~~~l~~~l~~l~~dk~ivv~C~sG~R 430 (462)
|||.=--.-+. +.+++ +..++-+.+++.. ...+.+=+-||.-
T Consensus 107 iIDalfG~Gl~-~~l~~----~~~~~i~~iN~~~-~~vlAiDiPSGl~ 148 (173)
T PF03853_consen 107 IIDALFGTGLS-RPLRG----PYAELIEWINASN-APVLAIDIPSGLD 148 (173)
T ss_dssp EEE----T-GG-CCGST----THHHHHHHHHHHT-SEEEEESS-----
T ss_pred EEECCCCCCCC-CCCCH----HHHHHHHHHHCCC-CCEEEEECCCCCC
T ss_conf 99888887888-77768----9999999997269-9789985898756
No 8
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR008425 This family consists of cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a Homo sapiens dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner ,.; PDB: 1fpz_C 1fq1_A.
Probab=84.81 E-value=0.3 Score=24.56 Aligned_cols=92 Identities=21% Similarity=0.127 Sum_probs=46.9
Q ss_pred HHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCHHHHHCCCCC-----EEEEECCHHHHHCCCCCCCEECCHHHHHHHH
Q ss_conf 99999999707610220001111100001223438999437995-----8998168489824889870336768999999
Q T0633 338 ADFRDALLRVGIDTVRYFTNSIDGLPTFVPELISPAELAETNYD-----ALIDIRAKSEFAAGSIPGAQQLSGGSAMWRL 412 (462)
Q Consensus 338 ~~a~~~L~~iG~d~v~~~~gg~~~~~~~~~~~~~~~~l~~~~~~-----~ilDvR~~~E~~~GhIpGAi~ip~~~l~~~l 412 (462)
..=...|+..|...|..+-...+--. +......+..+.... .|.|.-.|+ .+ ...++.+++
T Consensus 61 ~~Dl~~Lk~~Gi~~vv~l~t~~EL~~---lrVp~Lle~~~q~Gi~~~H~PI~Dg~~Pd-~~----------~~~~l~eeL 126 (207)
T PF05706_consen 61 QTDLEELKDQGITDVVVLCTRHELAK---LRVPDLLEVYQQHGITWHHLPIPDGGIPD-IA----------SCWELLEEL 126 (207)
T ss_dssp HHHHHHHHH----EEEE-S----TTT---TT-TTHHHHHHH---EEEE-----------HH----------HHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEEECCHHHH---CCCCCHHHHHHHCCCEEEECCCCCCCCCC-HH----------HHHHHHHHH
T ss_conf 98799999779877999877045866---37777999999749669863767788776-89----------999999999
Q ss_pred H-HCCCCCEEEEECCCCH-HH-HHHHHHHHHCCC
Q ss_conf 7-0799877999879716-89-999999996699
Q T0633 413 N-ELPAGGTLVTFCQSGA-RN-TVVANALRRAGF 443 (462)
Q Consensus 413 ~-~l~~dk~ivv~C~sG~-RS-~~aa~~L~~~G~ 443 (462)
. -|..++++++||.+|. || .+||.+|...|.
T Consensus 127 ~~~L~~gkkvvIHC~GGlGRTGlvAAcLL~~Lg~ 160 (207)
T PF05706_consen 127 KACLENGKKVVIHCYGGLGRTGLVAACLLVELGQ 160 (207)
T ss_dssp HHHHHTT--EEEE-------HHHHHHHHHHHH-S
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 9999769989999168875156789999864278
No 9
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation , . The PTP superfamily can be divided into four subfamilies : (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localization, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains Non-receptor (intracellular) PTPases All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif . Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution . A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre.; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein amino acid dephosphorylation; PDB: 1d5r_A 2img_A 1i9t_A 1i9s_A 2c46_D 1yn9_C 2q05_C 3cm3_A 2rf6_A 2p4d_A ....
Probab=72.77 E-value=1.5 Score=19.87 Aligned_cols=30 Identities=30% Similarity=0.663 Sum_probs=20.5
Q ss_pred CCCCCEEEEECCCCH-HHHH--HHHHHHHCCCC
Q ss_conf 799877999879716-8999--99999966995
Q T0633 415 LPAGGTLVTFCQSGA-RNTV--VANALRRAGFT 444 (462)
Q Consensus 415 l~~dk~ivv~C~sG~-RS~~--aa~~L~~~G~~ 444 (462)
...+++|+|||..|. ||.. ++.++...|++
T Consensus 70 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 70 RQQGGKVLVHCQAGISRSGTVVAAYLMRKEGMS 102 (133)
T ss_dssp HHTTCEEEEEE----HHHHHHHHHHHHHHSTSS
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 656847999838877769999999999943999
No 10
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes . These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others . The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response . The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system. ; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 1p6q_A 1p6u_A 2chf_A 2che_A 2flw_A 2pmc_C 2fmi_A 2fmk_A 2fmh_A 2flk_A ....
Probab=70.18 E-value=2.5 Score=18.45 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=63.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEECCHHHHHCCCCCCCEECCHH
Q ss_conf 89996880068999999997076102200011111000012234389994379958998168489824889870336768
Q T0633 327 LIVLAPDANTAADFRDALLRVGIDTVRYFTNSIDGLPTFVPELISPAELAETNYDALIDIRAKSEFAAGSIPGAQQLSGG 406 (462)
Q Consensus 327 ~vvv~~~~~~a~~a~~~L~~iG~d~v~~~~gg~~~~~~~~~~~~~~~~l~~~~~~~ilDvR~~~E~~~GhIpGAi~ip~~ 406 (462)
++++.++..........|...||.++.....+.+++.... ....+..|+|.+.+. . ..-
T Consensus 1 Vlivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~---------~~~~dliiid~~~~~-~-----------~~~ 59 (112)
T PF00072_consen 1 VLIVDDDPDIRQLLEKLLESQGFKEVETADSGEEALRLLE---------QSDPDLIIIDINLPD-M-----------SGL 59 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH---------HHCCSEEEEESSSSS-T-----------THH
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH---------HCCCCEEEEECCCCC-C-----------CCC
T ss_conf 3999998999999999998779978999899999999865---------259877733000323-4-----------472
Q ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 99999970799877999879716899999999966995899
Q T0633 407 SAMWRLNELPAGGTLVTFCQSGARNTVVANALRRAGFTVIE 447 (462)
Q Consensus 407 ~l~~~l~~l~~dk~ivv~C~sG~RS~~aa~~L~~~G~~v~~ 447 (462)
++.+++.+.+++.++++++......... ..+ +.|.+-+.
T Consensus 60 ~~~~~l~~~~~~~~vi~~~~~~~~~~~~-~~~-~~g~~~~l 98 (112)
T PF00072_consen 60 ELLERLRQQPPNIPVIVLTSNDDPEEIR-EAL-KAGVDDYL 98 (112)
T ss_dssp HHHHHHHHHTTTSEEEEEESSTSHHHHH-HHH-HTTESEEE
T ss_pred HHHHHHHHCCCCCEEECCCCCCCHHHHH-HHH-HCCCCEEE
T ss_conf 0667777406552596157899999999-999-87997999
No 11
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation , . The PTP superfamily can be divided into four subfamilies : (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localization, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains Non-receptor (intracellular) PTPases All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif . Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organization and endocytosis.; PDB: 2q47_B 1xri_B.
Probab=68.79 E-value=2.6 Score=18.26 Aligned_cols=12 Identities=0% Similarity=0.122 Sum_probs=5.2
Q ss_pred CCCEEEEEECCC
Q ss_conf 986189996880
Q T0633 323 DAQDLIVLAPDA 334 (462)
Q Consensus 323 ~~~~~vvv~~~~ 334 (462)
...|+++.|..|
T Consensus 90 ~n~PvLiHC~~G 101 (164)
T PF03162_consen 90 RNYPVLIHCTHG 101 (164)
T ss_dssp GG-SEEEE----
T ss_pred CCCCEEEEECCC
T ss_conf 998889980899
No 12
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3eey_A.
Probab=68.16 E-value=1.1 Score=20.80 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC----CEEEECCCCCC
Q ss_conf 78877665544200189999999999740899----73997368874
Q T0633 153 LLDEAAGGVDTRFAGAQQLFHSLKEQFLALPD----HIQVYPGHGAG 195 (462)
Q Consensus 153 l~~~~~~~~~~~~~~a~~l~~Sl~~~~~~L~~----~~~i~PgHg~g 195 (462)
||+++......++ .-..+|..-+.-|.. -.++||||-.|
T Consensus 57 LPggDk~i~T~~~----TTi~Al~~~l~lL~~gGii~iv~Y~GH~gG 99 (140)
T PF06962_consen 57 LPGGDKSITTKPE----TTIAALEAALELLKPGGIISIVIYPGHPGG 99 (140)
T ss_dssp -----TTS---HH----HHHHHHHHHHHHB-----EEEEE-------
T ss_pred CCCCCCCCCCCCH----HHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 8899986666861----299999999984177989999995899987
No 13
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H^+-transporting ATPase, but no evidence has been found to support this.; PDB: 2obn_B 2g0t_B.
Probab=63.49 E-value=2.1 Score=18.86 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=31.9
Q ss_pred HHHHHHHHC-CCEEEECCCHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEECCCH-----HHHHHHHHHH
Q ss_conf 999999747-9279875997998506865077657774356788898502889861899968800-----6899999999
Q T0633 272 EEVVEKLGS-EAVFVDTREQNQVHLGTVVGALNIPRGAKASNFAAWVIDPQKDAQDLIVLAPDAN-----TAADFRDALL 345 (462)
Q Consensus 272 ~e~~~~l~~-g~~iIDvR~~~~y~~gHIpGAinip~~~~~~~~~~~l~~~~~~~~~~vvv~~~~~-----~a~~a~~~L~ 345 (462)
.++.+..++ |..|+|+|.+ .+.. ..+.+... ..+...+.++..++. .+......|.
T Consensus 77 pel~~~A~~~g~~i~DvR~p-~~~~---------------~~~~g~~~--~v~~~ri~vvGTDcavGK~tTal~L~~~~~ 138 (301)
T PF07755_consen 77 PELAALAKKHGVQIWDVRKP-PKDL---------------PVASGKIR--EVKCKRILVVGTDCAVGKMTTALELRRALR 138 (301)
T ss_dssp HHHHCCHHC----EEETTS---SS----------------------GC--C-SSEEEEEE---S----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEECCCC-CCCC---------------CCCCCCCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999819926563479-8754---------------20345113--689988999616855238999999999999
Q ss_pred HHCCCEEEE
Q ss_conf 707610220
Q T0633 346 RVGIDTVRY 354 (462)
Q Consensus 346 ~iG~d~v~~ 354 (462)
+.|++....
T Consensus 139 ~~G~~a~fv 147 (301)
T PF07755_consen 139 ERGIKAGFV 147 (301)
T ss_dssp H----EEEE
T ss_pred HCCCCEEEE
T ss_conf 769971699
No 14
>PF10727 Rossmann-like: Rossmann-like domain; PDB: 3dfu_A 3c24_B.
Probab=59.45 E-value=3.9 Score=17.13 Aligned_cols=103 Identities=20% Similarity=0.165 Sum_probs=53.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEHHHHHHH-----CCCCCCCCCHHHHHCCCCCEEEEECCHHHHHCCCCCCC
Q ss_conf 1899968800689999999970761022000111110-----00012234389994379958998168489824889870
Q T0633 326 DLIVLAPDANTAADFRDALLRVGIDTVRYFTNSIDGL-----PTFVPELISPAELAETNYDALIDIRAKSEFAAGSIPGA 400 (462)
Q Consensus 326 ~~vvv~~~~~~a~~a~~~L~~iG~d~v~~~~gg~~~~-----~~~~~~~~~~~~l~~~~~~~ilDvR~~~E~~~GhIpGA 400 (462)
.-+-+...+.-....+..|.+.||.-+..+.-..... ........++.+....-+.++|-|.+..
T Consensus 11 l~IgiIGaGrVG~~La~~l~~aG~~v~~v~srs~~sa~~aa~~~~~~~~~~~~e~~~~aDlv~IavpDd~---------- 80 (127)
T PF10727_consen 11 LRIGIIGAGRVGTALARALARAGHPVVGVYSRSPASAERAAAFLPGVPVLDPEEVLRRADLVFIAVPDDA---------- 80 (127)
T ss_dssp -EEEEEE-----SHHHHHHHHSSSEEEE-SSCGG---TTT---------------CCC-SEEEE-S-CHH----------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH----------
T ss_conf 3699988898999999999978996999996684322211111111111000145563889999816077----------
Q ss_pred EECCHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 336768999999707--9987799987971689999999996699
Q T0633 401 QQLSGGSAMWRLNEL--PAGGTLVTFCQSGARNTVVANALRRAGF 443 (462)
Q Consensus 401 i~ip~~~l~~~l~~l--~~dk~ivv~C~sG~RS~~aa~~L~~~G~ 443 (462)
..++-+.+... .+.-.+++|| ||..++-.-.-+++.|-
T Consensus 81 ----I~~v~~~La~~~~~~~GqiV~Ht-SGa~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 81 ----IAEVAEQLAAAGAWRPGQIVVHT-SGALGSDVLDPARRAGA 120 (127)
T ss_dssp ----HHHHHHHHHCC--S----EEEES--S----GGGHHHHH---
T ss_pred ----HHHHHHHHHHHCCCCCCCEEEEC-CCCCCCHHCCCHHHCCC
T ss_conf ----89999999875057888689985-79973041062677998
No 15
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1ejj_A 1eqj_A 1o99_A 1o98_A 2ify_A.
Probab=57.19 E-value=2.2 Score=18.80 Aligned_cols=44 Identities=30% Similarity=0.358 Sum_probs=30.7
Q ss_pred HHHHHHHHHCCCCEEEE-EE----CCCCCCHHHHHHHHHHHCCCE-EEEC
Q ss_conf 99999999618927999-97----388705566899999970982-8875
Q T0633 36 QTYLDLAAKNNMVISAV-TE----THIHADYLSGTRELAAATGAE-IFLS 79 (462)
Q Consensus 36 ~~~~~~~~~~g~~i~~I-l~----TH~H~DH~~g~~~l~~~~~a~-i~~~ 79 (462)
...++.+++.|-++--+ |+ -|.|.||+-+..++++..|++ ||+|
T Consensus 17 ~~~~~~~k~~~~~lHl~GLlSdGGVHSH~~Hl~al~~~a~~~gv~~V~vH 66 (223)
T PF06415_consen 17 LEAIDHAKKNNGALHLMGLLSDGGVHSHIDHLFALIELAKEEGVKKVYVH 66 (223)
T ss_dssp HHHHHHHHH----EEEE--B--------HHHHHHHHHHHHH-----EEEE
T ss_pred HHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999998559828999972398742239999999999998699879999
No 16
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233)
Probab=45.30 E-value=6.4 Score=15.66 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=29.8
Q ss_pred CCCCCE-EEEEECCCHHHHHHHHHHH-HHCCCEEEEEHHHHHHHC
Q ss_conf 889861-8999688006899999999-707610220001111100
Q T0633 321 QKDAQD-LIVLAPDANTAADFRDALL-RVGIDTVRYFTNSIDGLP 363 (462)
Q Consensus 321 ~~~~~~-~vvv~~~~~~a~~a~~~L~-~iG~d~v~~~~gg~~~~~ 363 (462)
..++.. +++++..+....+.+..|. .+|..+...++||.+...
T Consensus 148 ~~~G~~~~~v~~~~g~tl~ela~~~~~~lg~~~A~nLDGGgStl~ 192 (211)
T PF09992_consen 148 DADGRVLLLVVDGAGMTLYELAQIMKDELGAVNALNLDGGGSTLY 192 (211)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEE
T ss_conf 479989999996998699999999998579988998378630699
No 17
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) , , (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0004605 phosphatidate cytidylyltransferase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane
Probab=44.85 E-value=5.3 Score=16.20 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9999999999740899739973688
Q T0633 169 QQLFHSLKEQFLALPDHIQVYPGHG 193 (462)
Q Consensus 169 ~~l~~Sl~~~~~~L~~~~~i~PgHg 193 (462)
.++++|.-+|-....|.-.+.||||
T Consensus 212 GDl~~S~~KR~~~vKD~g~~lpGhG 236 (259)
T PF01148_consen 212 GDLFESMIKRDAGVKDSGNLLPGHG 236 (259)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 8888999887328886546277878
No 18
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation , . The PTP superfamily can be divided into four subfamilies : (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localization, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains Non-receptor (intracellular) PTPases All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif . Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre.. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein amino acid dephosphorylation; PDB: 2oc3_A 3brh_B 2p6x_B 2qcj_A 2qct_A 2i42_A 3f9a_A 3f9b_A 1xxv_A 1ytw_A ....
Probab=40.81 E-value=7.5 Score=15.21 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=18.0
Q ss_pred CCCCEEEECCEEEEEEECCCCCCCCEEEEE
Q ss_conf 688888888879999877899703569998
Q T0633 96 MHNSTIKLGNITITAKHTPGHTPEHLSFLI 125 (462)
Q Consensus 96 ~dg~~i~~g~~~l~vi~tPGHT~~si~~~~ 125 (462)
+.++....|.++++....--+.++.+...+
T Consensus 92 ~~~~~~~~g~~~V~~~~~~~~~~~~~~~~l 121 (235)
T PF00102_consen 92 EEGESLKYGNFTVKCVKEESDKDGYTVRKL 121 (235)
T ss_dssp SSSSEEEETTEEEEEEEEEEEESSEEEEEE
T ss_pred CCCCCEEEECCCCEEEEEEECCCCEEEEEE
T ss_conf 333311320213202358741576368998
No 19
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphhydryl compounds, including anticancer and immunosuppressive thiopurines .; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1pjz_A 3bgd_B 2gb4_A 3bgi_A 2h11_A 2bzg_A.
Probab=40.69 E-value=7.6 Score=15.20 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=6.9
Q ss_pred CCCHHHHHHHHHCC
Q ss_conf 56889999997479
Q T0633 268 KLEAEEVVEKLGSE 281 (462)
Q Consensus 268 ~ls~~e~~~~l~~g 281 (462)
.++.+++.+....+
T Consensus 167 ~v~~~el~~l~~~~ 180 (216)
T PF05724_consen 167 SVSEEELRELFGPG 180 (216)
T ss_dssp ---HHHHHHH----
T ss_pred CCCHHHHHHHHCCC
T ss_conf 89999999984588
No 20
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2pb2_A 2pb0_B 1wkg_A 1wkh_B 1vef_B 2can_A 1gbn_B 1oat_C 2byj_A 2byl_B ....
Probab=39.86 E-value=7.8 Score=15.11 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=8.2
Q ss_pred CEEEEEEEECCCCEEEEEEC
Q ss_conf 00358898679986999818
Q T0633 12 AQASYFIGCQREGKAIVVDA 31 (462)
Q Consensus 12 ~~~sYli~~~~~~~a~iIDP 31 (462)
+..+||. |.+ |. -.||-
T Consensus 5 a~G~~l~-D~d-G~-~ylD~ 21 (339)
T PF00202_consen 5 AEGAYLW-DVD-GN-EYLDF 21 (339)
T ss_dssp EETTEEE-ETT-EE-EEEBS
T ss_pred EECCEEE-ECC-CC-EEEEC
T ss_conf 4538899-799-99-99986
No 21
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the core methyltransferase domain found in all TehB proteins.; PDB: 2i6g_B.
Probab=35.86 E-value=8.9 Score=14.71 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=12.1
Q ss_pred EEECCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 98187798999999996189279999
Q T0633 28 VVDARRDIQTYLDLAAKNNMVISAVT 53 (462)
Q Consensus 28 iIDP~~d~~~~~~~~~~~g~~i~~Il 53 (462)
++|-|-..-+-.-++.++|+.|+++=
T Consensus 34 vLDlgCG~GRNal~LA~~G~~VtavD 59 (192)
T PF03848_consen 34 VLDLGCGSGRNALYLAQQGFDVTAVD 59 (192)
T ss_dssp EEE-------HHHHHHH----EEEEE
T ss_pred EEECCCCCCHHHHHHHHCCCEEEEEE
T ss_conf 88615889885999997899599997
No 22
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) , . This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2yv1_A 3dmy_B 2nu9_E 2scu_E 2nu6_B 1cqi_E 2nua_B 1cqj_E 1scu_E 1jll_E ....
Probab=32.68 E-value=10 Score=14.37 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=5.7
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999970761
Q T0633 339 DFRDALLRVGID 350 (462)
Q Consensus 339 ~a~~~L~~iG~d 350 (462)
..+..|...|..
T Consensus 127 ~~~~~L~~ag~~ 138 (153)
T PF00549_consen 127 EQAGALEEAGVG 138 (153)
T ss_dssp HHHHHHHH---E
T ss_pred HHHHHHHHCCCC
T ss_conf 799999858997
No 23
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0005351 sugar:hydrogen ion symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 3czc_A 1vkr_A 2few_B 1vrv_A 2r48_A 2r4q_A 1tvm_A 1iib_B 1e2b_A 1h9c_A ....
Probab=32.67 E-value=10 Score=14.37 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=11.6
Q ss_pred EEEEECCCHHHHHHH-----HHHHHHCCCE
Q ss_conf 899968800689999-----9999707610
Q T0633 327 LIVLAPDANTAADFR-----DALLRVGIDT 351 (462)
Q Consensus 327 ~vvv~~~~~~a~~a~-----~~L~~iG~d~ 351 (462)
++++|.+|..++.++ ..+...|++-
T Consensus 2 ilv~C~~Gi~TS~m~~~~ik~~~~~~gi~~ 31 (90)
T PF02302_consen 2 ILVACGSGIGTSFMLASKIKKALKKLGIDV 31 (90)
T ss_dssp EEEEE----HHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 999998807899999999999999869858
No 24
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=30.90 E-value=8.3 Score=14.91 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=10.4
Q ss_pred HHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 99999974089973997368874
Q T0633 173 HSLKEQFLALPDHIQVYPGHGAG 195 (462)
Q Consensus 173 ~Sl~~~~~~L~~~~~i~PgHg~g 195 (462)
+++-+|+ .++..|+-=|.-|
T Consensus 58 d~~v~kf---~~~F~i~LFHYDg 77 (294)
T PF05212_consen 58 DAIVKKF---SENFTIMLFHYDG 77 (294)
T ss_pred HHHHHHC---CCCEEEEEEEECC
T ss_conf 9999715---3580699998658
No 25
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains . Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products . The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1j5y_A.
Probab=28.67 E-value=12 Score=13.93 Aligned_cols=77 Identities=18% Similarity=0.260 Sum_probs=50.7
Q ss_pred HHHHHHHHHCCCEEEECCC-HHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCC--------CCEEEEEECCCHHHHHHH
Q ss_conf 8999999747927987599-7998506865077657774356788898502889--------861899968800689999
Q T0633 271 AEEVVEKLGSEAVFVDTRE-QNQVHLGTVVGALNIPRGAKASNFAAWVIDPQKD--------AQDLIVLAPDANTAADFR 341 (462)
Q Consensus 271 ~~e~~~~l~~g~~iIDvR~-~~~y~~gHIpGAinip~~~~~~~~~~~l~~~~~~--------~~~~vvv~~~~~~a~~a~ 341 (462)
-+|+.--++.|..|+||.= ..-| |.|.+.+||--.....+|...+...... -....+.+++.....++.
T Consensus 11 ~~EL~~IVd~Gg~V~DV~veHp~Y--G~i~~~L~I~sr~dv~~F~~~l~~~~a~~L~~LT~GvH~HtI~a~~ee~l~~I~ 88 (98)
T PF02829_consen 11 EEELNIIVDNGGTVLDVIVEHPVY--GEITAELNISSRRDVDKFMEKLESSKAKPLSELTGGVHLHTIEAPDEEILDEIE 88 (98)
T ss_dssp HHHHHHHHH----EEEEEB--S------B-----B-SHHHHHHHHHHHHH--S--STT-----EEEEEE-SSHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEEECCCC--CEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEEEECCHHHHHHHH
T ss_conf 999999997799999999966997--479999842888999999999851487057886198677999859999999999
Q ss_pred HHHHHHCC
Q ss_conf 99997076
Q T0633 342 DALLRVGI 349 (462)
Q Consensus 342 ~~L~~iG~ 349 (462)
..|.+.||
T Consensus 89 ~~L~~~G~ 96 (98)
T PF02829_consen 89 EALKKKGF 96 (98)
T ss_dssp HHHHH---
T ss_pred HHHHHCCC
T ss_conf 99998778
Done!