Query T0634 3N53, , 140 residues
Match_columns 140
No_of_seqs 117 out of 24335
Neff 7.5
Searched_HMMs 22458
Date Thu Jul 22 15:34:03 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0634.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0634.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w25_A Stalked-cell differenti 100.0 7.6E-32 3.4E-36 217.5 18.3 130 4-133 2-132 (459)
2 3crn_A Response regulator rece 100.0 6.4E-31 2.9E-35 211.7 18.3 123 1-125 1-124 (132)
3 3luf_A Two-component system re 100.0 3E-31 1.3E-35 213.8 15.8 125 3-127 124-250 (259)
4 3c3m_A Response regulator rece 100.0 2.3E-31 1E-35 214.5 14.6 127 1-127 1-128 (138)
5 2qzj_A Two-component response 100.0 1.2E-30 5.2E-35 210.1 16.7 128 1-131 1-130 (136)
6 3gt7_A Sensor protein; structu 100.0 2.5E-30 1.1E-34 208.0 17.5 120 5-124 9-129 (154)
7 3gl9_A Response regulator; bet 100.0 3.4E-30 1.5E-34 207.3 17.2 120 1-121 1-121 (122)
8 2a9o_A Response regulator; ess 100.0 2.1E-30 9.5E-35 208.5 15.6 119 3-124 1-120 (120)
9 1s8n_A Putative antiterminator 100.0 2.9E-30 1.3E-34 207.6 16.3 123 4-129 14-138 (205)
10 3cnb_A DNA-binding response re 100.0 5.1E-30 2.3E-34 206.1 16.3 125 4-128 9-136 (143)
11 1xhf_A DYE resistance, aerobic 100.0 1.1E-29 4.7E-34 204.2 17.6 120 1-123 1-121 (123)
12 1zh2_A KDP operon transcriptio 100.0 6.4E-30 2.9E-34 205.5 16.2 119 3-124 1-120 (121)
13 2zay_A Response regulator rece 100.0 4.9E-30 2.2E-34 206.3 15.3 122 4-125 9-131 (147)
14 2jba_A Phosphate regulon trans 100.0 6.9E-31 3.1E-35 211.5 10.9 122 1-123 1-123 (127)
15 3cfy_A Putative LUXO repressor 100.0 9.7E-30 4.3E-34 204.4 16.8 127 1-129 1-129 (137)
16 1mvo_A PHOP response regulator 100.0 3.8E-30 1.7E-34 206.9 14.7 124 1-127 2-126 (136)
17 2qr3_A Two-component system re 100.0 5.3E-30 2.4E-34 206.0 14.1 123 1-125 1-129 (140)
18 3cg4_A Response regulator rece 100.0 1.7E-30 7.5E-35 209.1 11.6 129 3-131 7-136 (142)
19 1qkk_A DCTD, C4-dicarboxylate 100.0 2.2E-29 1E-33 202.1 17.2 125 2-128 2-127 (155)
20 3f6p_A Transcriptional regulat 100.0 8.5E-30 3.8E-34 204.8 15.1 119 1-123 1-120 (120)
21 3jte_A Response regulator rece 100.0 3.7E-29 1.6E-33 200.8 17.8 127 1-129 1-130 (143)
22 2pl1_A Transcriptional regulat 100.0 3.3E-29 1.5E-33 201.1 17.5 119 4-124 1-120 (121)
23 3kcn_A Adenylate cyclase homol 100.0 9E-29 4E-33 198.4 18.9 127 1-129 1-130 (151)
24 1mb3_A Cell division response 100.0 1.1E-29 4.8E-34 204.1 13.4 120 4-123 2-122 (124)
25 2ayx_A Sensor kinase protein R 100.0 9.1E-29 4.1E-33 198.3 16.8 121 4-126 130-251 (254)
26 1srr_A SPO0F, sporulation resp 100.0 3.3E-29 1.5E-33 201.1 14.5 122 1-124 1-123 (124)
27 2jk1_A HUPR, hydrogenase trans 100.0 1.6E-28 7.1E-33 196.8 17.9 125 4-130 2-127 (139)
28 2qxy_A Response regulator; reg 100.0 5.1E-29 2.3E-33 199.9 15.2 122 1-125 1-124 (142)
29 3bre_A Probable two-component 100.0 8.9E-29 4E-33 198.4 16.4 122 3-124 18-141 (358)
30 2gkg_A Response regulator homo 100.0 5.3E-29 2.4E-33 199.8 14.2 120 1-122 4-125 (127)
31 3hv2_A Response regulator/HD d 100.0 5.9E-28 2.6E-32 193.3 18.1 124 3-128 14-139 (153)
32 3kht_A Response regulator; PSI 100.0 3E-28 1.3E-32 195.1 16.3 126 1-126 1-132 (144)
33 1k68_A Phytochrome response re 100.0 4E-28 1.8E-32 194.4 16.8 121 3-123 2-132 (140)
34 1zgz_A Torcad operon transcrip 100.0 5.5E-28 2.5E-32 193.5 17.4 120 1-124 1-121 (122)
35 2rjn_A Response regulator rece 100.0 7.7E-28 3.4E-32 192.5 18.1 126 1-128 1-132 (154)
36 1tmy_A CHEY protein, TMY; chem 100.0 3.5E-28 1.5E-32 194.7 15.6 118 1-121 1-120 (120)
37 3b2n_A Uncharacterized protein 100.0 3.5E-28 1.6E-32 194.7 15.6 122 1-124 1-125 (133)
38 3i42_A Response regulator rece 100.0 1.8E-28 8E-33 196.5 14.1 121 1-122 1-122 (127)
39 1k66_A Phytochrome response re 100.0 4.7E-28 2.1E-32 193.9 16.1 122 3-124 6-140 (149)
40 3lte_A Response regulator; str 100.0 4E-28 1.8E-32 194.3 15.8 119 3-122 6-125 (132)
41 3hdv_A Response regulator; PSI 100.0 3.7E-28 1.6E-32 194.6 15.5 122 3-125 7-130 (136)
42 3grc_A Sensor protein, kinase; 100.0 1.7E-28 7.5E-33 196.7 13.6 124 3-126 6-131 (140)
43 1dbw_A Transcriptional regulat 100.0 6E-28 2.7E-32 193.2 16.3 120 1-122 1-121 (126)
44 1p6q_A CHEY2; chemotaxis, sign 100.0 4.4E-28 1.9E-32 194.1 15.2 120 3-122 6-127 (129)
45 3hdg_A Uncharacterized protein 100.0 5.3E-28 2.3E-32 193.6 15.4 118 4-123 8-126 (137)
46 3heb_A Response regulator rece 100.0 9.7E-28 4.3E-32 191.9 16.4 122 1-122 1-135 (152)
47 1jbe_A Chemotaxis protein CHEY 100.0 1.2E-27 5.1E-32 191.5 16.7 120 4-123 5-126 (128)
48 1i3c_A Response regulator RCP1 100.0 2.2E-27 1E-31 189.7 17.7 121 3-123 8-138 (149)
49 3eq2_A Probable two-component 100.0 1.3E-27 5.7E-32 191.2 15.7 118 4-123 6-125 (394)
50 1yio_A Response regulatory pro 100.0 1.2E-27 5.4E-32 191.3 15.5 126 1-128 1-128 (208)
51 3a10_A Response regulator; pho 100.0 3.1E-28 1.4E-32 195.0 12.4 114 3-120 1-115 (116)
52 3eod_A Protein HNR; response r 100.0 9.1E-28 4E-32 192.1 14.6 120 3-124 7-128 (130)
53 3lua_A Response regulator rece 100.0 4.3E-28 1.9E-32 194.1 11.9 128 1-128 1-133 (140)
54 1ys7_A Transcriptional regulat 100.0 1.1E-27 4.7E-32 191.7 13.7 122 1-124 5-127 (233)
55 3dzd_A Transcriptional regulat 100.0 2.9E-27 1.3E-31 189.0 15.6 118 4-123 1-119 (368)
56 3cg0_A Response regulator rece 100.0 6.3E-27 2.8E-31 186.9 17.1 122 3-127 9-133 (140)
57 3cu5_A Two component transcrip 100.0 2E-27 8.9E-32 190.0 13.5 122 1-125 1-126 (141)
58 2pln_A HP1043, response regula 99.9 7E-27 3.1E-31 186.6 15.2 115 4-124 19-135 (137)
59 2qsj_A DNA-binding response re 99.9 2.9E-27 1.3E-31 189.0 13.1 122 1-124 1-126 (154)
60 3h5i_A Response regulator/sens 99.9 2.9E-27 1.3E-31 189.0 12.9 125 1-128 1-130 (140)
61 1ny5_A Transcriptional regulat 99.9 5.5E-26 2.4E-30 181.0 19.0 124 4-129 1-125 (387)
62 3eqz_A Response regulator; str 99.9 3.7E-28 1.6E-32 194.6 7.6 121 1-123 1-126 (135)
63 3h1g_A Chemotaxis protein CHEY 99.9 9.5E-27 4.2E-31 185.7 14.7 122 2-123 4-128 (129)
64 1kgs_A DRRD, DNA binding respo 99.9 2.1E-26 9.4E-31 183.6 16.3 121 1-124 1-122 (225)
65 2oqr_A Sensory transduction pr 99.9 7.1E-27 3.2E-31 186.5 13.5 119 1-123 3-122 (230)
66 1dz3_A Stage 0 sporulation pro 99.9 1.2E-26 5.5E-31 185.1 14.0 122 1-124 1-125 (130)
67 3hzh_A Chemotaxis response reg 99.9 1E-26 4.5E-31 185.6 13.5 115 5-121 38-156 (157)
68 2r25_B Osmosensing histidine p 99.9 3.4E-26 1.5E-30 182.3 16.1 119 2-121 1-126 (133)
69 2gwr_A DNA-binding response re 99.9 7.3E-27 3.2E-31 186.5 12.0 120 1-123 1-123 (238)
70 2qv0_A Protein MRKE; structura 99.9 6.2E-26 2.7E-30 180.7 15.9 122 3-128 9-133 (143)
71 2qvg_A Two component response 99.9 4.8E-26 2.1E-30 181.3 15.3 117 3-119 7-132 (143)
72 3cz5_A Two-component response 99.9 5.2E-26 2.3E-30 181.2 14.8 121 1-123 1-126 (153)
73 3eul_A Possible nitrate/nitrit 99.9 9.7E-26 4.3E-30 179.5 15.9 121 5-127 17-140 (152)
74 1dcf_A ETR1 protein; beta-alph 99.9 1.9E-26 8.3E-31 183.9 11.9 119 4-123 8-130 (136)
75 3f6c_A Positive transcription 99.9 1.1E-25 5.1E-30 179.0 12.4 120 4-125 2-123 (134)
76 1dc7_A NTRC, nitrogen regulati 99.9 1.7E-27 7.6E-32 190.4 2.2 121 1-123 1-122 (124)
77 3kto_A Response regulator rece 99.9 1.9E-25 8.4E-30 177.6 12.5 122 3-124 6-128 (136)
78 2j48_A Two-component sensor ki 99.9 2.1E-25 9.2E-30 177.4 11.5 114 4-120 2-116 (119)
79 3ilh_A Two component response 99.9 3.7E-24 1.6E-28 169.6 17.1 120 3-122 9-139 (146)
80 1p2f_A Response regulator; DRR 99.9 1.9E-24 8.5E-29 171.4 15.6 117 3-123 2-118 (220)
81 3c97_A Signal transduction his 99.9 4.9E-25 2.2E-29 175.1 11.4 114 5-121 12-129 (140)
82 2b4a_A BH3024; 10175646, struc 99.9 3.3E-25 1.5E-29 176.1 10.3 115 1-120 13-129 (138)
83 3kyj_B CHEY6 protein, putative 99.9 9.5E-25 4.2E-29 173.3 11.6 106 4-110 14-123 (145)
84 2rdm_A Response regulator rece 99.9 8.1E-24 3.6E-28 167.5 13.6 119 2-124 4-125 (132)
85 1a2o_A CHEB methylesterase; ba 99.9 2.3E-23 1E-27 164.6 15.7 106 1-109 1-111 (349)
86 1a04_A Nitrate/nitrite respons 99.9 6.9E-23 3.1E-27 161.7 16.5 117 4-122 6-125 (215)
87 1qo0_D AMIR; binding protein, 99.9 3.9E-23 1.7E-27 163.3 12.9 117 4-127 13-130 (196)
88 2hqr_A Putative transcriptiona 99.9 9.7E-23 4.3E-27 160.8 14.0 113 4-122 1-115 (223)
89 3cwo_X Beta/alpha-barrel prote 99.8 4.4E-21 2E-25 150.4 7.4 84 29-114 8-91 (237)
90 3c3w_A Two component transcrip 99.8 1E-18 4.6E-23 135.7 10.5 120 3-124 1-123 (225)
91 3luf_A Two-component system re 99.8 3.1E-18 1.4E-22 132.7 10.4 111 1-115 1-113 (259)
92 3klo_A Transcriptional regulat 99.5 9E-15 4E-19 111.1 6.5 119 3-122 7-129 (225)
93 1w25_A Stalked-cell differenti 99.2 5.5E-09 2.5E-13 75.0 17.9 123 4-127 153-275 (459)
94 2yxb_A Coenzyme B12-dependent 98.6 2.8E-06 1.3E-10 58.1 15.4 124 3-128 18-151 (161)
95 2vyc_A Biodegradative arginine 97.6 0.0012 5.5E-08 41.7 11.6 118 4-123 1-134 (755)
96 1ccw_A Protein (glutamate muta 97.6 0.0039 1.7E-07 38.6 13.9 120 1-121 1-135 (137)
97 1req_A Methylmalonyl-COA mutas 95.6 0.12 5.4E-06 29.3 13.9 111 4-116 597-717 (727)
98 1y80_A Predicted cobalamin bin 95.5 0.083 3.7E-06 30.3 8.6 101 5-108 90-200 (210)
99 3fkq_A NTRC-like two-domain pr 95.3 0.15 6.6E-06 28.7 11.9 54 4-57 22-79 (373)
100 2r6o_A Putative diguanylate cy 94.9 0.085 3.8E-06 30.2 7.0 107 11-118 161-278 (294)
101 2i2x_B MTAC, methyltransferase 94.6 0.24 1.1E-05 27.4 11.5 108 4-116 124-241 (258)
102 3ezx_A MMCP 1, monomethylamine 94.5 0.11 5E-06 29.4 6.9 102 4-108 93-206 (215)
103 2bas_A YKUI protein; EAL domai 94.2 0.24 1.1E-05 27.4 8.1 107 13-120 157-278 (431)
104 1xrs_B D-lysine 5,6-aminomutas 94.1 0.3 1.3E-05 26.8 13.1 117 4-123 121-259 (262)
105 3bic_A Methylmalonyl-COA mutas 90.4 0.89 4E-05 23.8 12.6 116 4-121 605-734 (762)
106 2v5j_A 2,4-dihydroxyhept-2-ENE 89.3 1.1 4.8E-05 23.3 11.7 100 16-116 27-129 (287)
107 1q6o_A Humps, 3-keto-L-gulonat 89.0 1.1 5.1E-05 23.2 6.9 106 1-106 1-137 (216)
108 1ka9_F Imidazole glycerol phos 88.8 1.2 5.2E-05 23.1 7.0 68 34-104 153-224 (252)
109 1xm3_A Thiazole biosynthesis p 88.1 1.3 5.8E-05 22.8 11.5 103 14-121 114-228 (264)
110 3igs_A N-acetylmannosamine-6-p 86.1 1.7 7.5E-05 22.1 11.3 88 13-105 116-210 (232)
111 1g5t_A COB(I)alamin adenosyltr 85.4 1.6 7.2E-05 22.2 5.7 63 41-111 115-188 (196)
112 1qv9_A F420-dependent methylen 84.8 1.9 8.7E-05 21.7 6.8 103 1-107 1-121 (283)
113 1wv2_A Thiazole moeity, thiazo 84.2 2.1 9.2E-05 21.6 10.4 103 14-121 123-237 (265)
114 2vws_A YFAU, 2-keto-3-deoxy su 84.1 2.1 9.3E-05 21.6 12.6 99 18-117 8-109 (267)
115 1dxe_A 2-dehydro-3-deoxy-galac 83.7 2.2 9.7E-05 21.4 11.1 99 18-117 9-111 (256)
116 3gfz_A Klebsiella pneumoniae B 83.7 1.9 8.3E-05 21.8 5.4 96 11-107 289-395 (413)
117 1qdl_B Protein (anthranilate s 83.4 0.73 3.2E-05 24.4 3.2 80 3-83 1-84 (195)
118 3gpi_A NAD-dependent epimerase 83.4 1.3 5.9E-05 22.8 4.5 32 1-33 1-33 (286)
119 3bul_A Methionine synthase; tr 83.1 2.3 0.0001 21.3 9.6 112 3-116 98-222 (579)
120 1hdo_A Biliverdin IX beta redu 81.4 0.51 2.3E-05 25.4 1.8 53 1-54 1-55 (206)
121 2w6r_A Imidazole glycerol phos 81.2 2.7 0.00012 20.9 8.3 74 35-111 158-236 (266)
122 3kzp_A LMO0111 protein, putati 80.6 0.62 2.8E-05 24.8 2.0 92 15-107 130-233 (235)
123 3ius_A Uncharacterized conserv 80.2 2.9 0.00013 20.6 5.4 53 1-55 4-57 (286)
124 1xj5_A Spermidine synthase 1; 79.4 3.1 0.00014 20.5 7.1 69 3-71 144-224 (334)
125 1tlt_A Putative oxidoreductase 79.1 3.2 0.00014 20.4 9.6 101 1-117 1-110 (319)
126 3ic5_A Putative saccharopine d 77.1 3.6 0.00016 20.1 8.8 92 1-102 4-97 (118)
127 2z6i_A Trans-2-enoyl-ACP reduc 75.7 3.9 0.00018 19.8 10.2 82 19-104 103-190 (332)
128 3bwc_A Spermidine synthase; SA 75.5 4 0.00018 19.8 5.0 68 4-71 120-199 (304)
129 1vhq_A Enhancing lycopene bios 75.4 3.2 0.00014 20.4 4.4 33 1-33 4-45 (232)
130 2w2k_A D-mandelate dehydrogena 75.0 4.1 0.00018 19.7 5.3 108 1-111 1-116 (348)
131 3evn_A Oxidoreductase, GFO/IDH 74.3 4.3 0.00019 19.6 5.8 105 1-117 1-112 (329)
132 1thf_D HISF protein; thermophI 74.1 4.3 0.00019 19.6 10.8 82 32-116 150-241 (253)
133 3l6e_A Oxidoreductase, short-c 73.7 4.4 0.0002 19.5 8.0 107 1-121 1-110 (235)
134 3bw2_A 2-nitropropane dioxygen 72.9 4.6 0.00021 19.4 12.2 82 19-104 138-236 (369)
135 3eyw_A C-terminal domain of gl 71.4 5 0.00022 19.2 9.8 96 5-108 29-125 (413)
136 1req_B Methylmalonyl-COA mutas 70.6 5.2 0.00023 19.1 7.5 113 3-119 509-632 (637)
137 2ekc_A AQ_1548, tryptophan syn 69.9 5.4 0.00024 19.0 8.3 74 36-111 34-135 (262)
138 3hvb_A Protein FIMX; EAL phosp 69.1 5.6 0.00025 18.9 7.7 96 14-110 323-428 (437)
139 1wyz_A Putative S-adenosylmeth 69.1 5.6 0.00025 18.9 5.3 85 5-93 33-129 (242)
140 3dhn_A NAD-dependent epimerase 68.4 5.8 0.00026 18.8 4.9 36 1-36 1-39 (227)
141 2b2c_A Spermidine synthase; be 66.9 6.2 0.00028 18.6 5.9 68 3-71 132-211 (314)
142 1ujp_A Tryptophan synthase alp 66.7 4.4 0.0002 19.5 3.5 27 76-104 202-228 (271)
143 3e18_A Oxidoreductase; dehydro 66.6 6.3 0.00028 18.6 10.9 103 1-118 1-111 (359)
144 3c2e_A Nicotinate-nucleotide p 66.3 5 0.00022 19.2 3.7 73 28-103 202-275 (294)
145 2khz_A C-MYC-responsive protei 63.9 3 0.00013 20.6 2.2 71 45-121 76-150 (165)
146 3bo9_A Putative nitroalkan dio 63.2 7.3 0.00032 18.2 11.2 83 18-104 116-204 (326)
147 1ye8_A Protein THEP1, hypothet 63.2 7.3 0.00032 18.2 7.0 84 37-121 90-177 (178)
148 3dii_A Short-chain dehydrogena 63.1 7.3 0.00032 18.2 8.8 81 1-84 1-83 (247)
149 1yad_A Regulatory protein TENI 63.1 7.3 0.00033 18.2 10.2 90 31-125 116-217 (221)
150 2o07_A Spermidine synthase; st 62.9 7.4 0.00033 18.1 5.9 68 3-71 119-198 (304)
151 3lm8_A Thiamine pyrophosphokin 62.4 7.5 0.00034 18.1 4.8 110 3-121 1-119 (222)
152 3hv8_A Protein FIMX; EAL phosp 62.1 7.6 0.00034 18.1 5.7 96 15-111 155-260 (268)
153 1yxy_A Putative N-acetylmannos 61.4 7.8 0.00035 18.0 10.3 87 15-105 120-215 (234)
154 1h5y_A HISF; histidine biosynt 60.9 8 0.00036 17.9 8.8 68 34-104 155-226 (253)
155 2d59_A Hypothetical protein PH 60.7 2.7 0.00012 20.9 1.5 70 36-105 39-108 (144)
156 2hmt_A YUAA protein; RCK, KTN, 60.6 6.3 0.00028 18.5 3.4 111 2-121 5-137 (144)
157 1i1q_B Anthranilate synthase c 60.1 8.3 0.00037 17.8 4.7 76 5-83 2-83 (192)
158 3ego_A Probable 2-dehydropanto 59.8 8.4 0.00037 17.8 10.7 41 1-43 1-41 (307)
159 3dqq_A Putative tRNA synthase; 59.2 8.6 0.00038 17.7 4.9 15 3-17 2-16 (421)
160 3f4w_A Putative hexulose 6 pho 59.0 8.6 0.00038 17.7 5.7 84 34-120 115-207 (211)
161 3euw_A MYO-inositol dehydrogen 57.7 9.1 0.0004 17.6 11.0 102 1-117 1-110 (344)
162 3mel_A Thiamin pyrophosphokina 57.7 7.5 0.00034 18.1 3.4 107 3-119 1-116 (222)
163 3m2t_A Probable dehydrogenase; 57.0 9.3 0.00041 17.5 8.4 105 1-118 3-114 (359)
164 3ff4_A Uncharacterized protein 56.0 5.5 0.00025 18.9 2.5 95 2-102 3-109 (122)
165 2bw0_A 10-FTHFDH, 10-formyltet 55.6 9.8 0.00044 17.4 6.8 53 1-53 20-106 (329)
166 2q5c_A NTRC family transcripti 55.4 9.9 0.00044 17.3 14.1 74 1-74 1-93 (196)
167 1vr0_A Probable 2-phosphosulfo 54.8 10 0.00045 17.3 5.0 51 5-55 32-83 (247)
168 3m3p_A Glutamine amido transfe 54.6 6.4 0.00028 18.5 2.6 79 1-82 1-88 (250)
169 3c85_A Putative glutathione-re 54.3 10 0.00046 17.2 8.9 91 5-103 65-157 (183)
170 3dr5_A Putative O-methyltransf 54.1 10 0.00046 17.2 4.1 63 4-66 82-150 (221)
171 2d00_A V-type ATP synthase sub 53.7 11 0.00047 17.2 10.4 74 1-82 1-78 (109)
172 3ffs_A Inosine-5-monophosphate 53.7 11 0.00047 17.2 12.0 96 5-104 158-274 (400)
173 1orr_A CDP-tyvelose-2-epimeras 53.5 11 0.00047 17.1 6.8 30 3-32 1-31 (347)
174 3fwz_A Inner membrane protein 53.5 11 0.00047 17.1 9.8 93 4-104 31-124 (140)
175 1e6u_A GDP-fucose synthetase; 53.4 11 0.00048 17.1 6.4 56 1-56 1-65 (321)
176 1to3_A Putative aldolase YIHT; 53.2 11 0.00048 17.1 6.8 66 39-104 183-253 (304)
177 3llv_A Exopolyphosphatase-rela 53.1 11 0.00048 17.1 10.2 90 5-103 31-121 (141)
178 1evy_A Glycerol-3-phosphate de 53.0 11 0.00048 17.1 4.6 42 1-42 13-54 (366)
179 1z47_A CYSA, putative ABC-tran 53.0 11 0.00048 17.1 4.2 47 38-84 155-204 (355)
180 2a9v_A GMP synthase; NP_394403 52.7 2.9 0.00013 20.7 0.6 74 3-82 13-91 (212)
181 1iy9_A Spermidine synthase; ro 52.3 11 0.00049 17.0 5.3 68 3-71 99-178 (275)
182 2onk_A Molybdate/tungstate ABC 51.7 9.5 0.00042 17.5 3.1 47 38-84 136-185 (240)
183 3jr2_A Hexulose-6-phosphate sy 51.6 11 0.00051 17.0 5.1 106 1-106 4-140 (218)
184 3exr_A RMPD (hexulose-6-phosph 51.3 12 0.00051 16.9 5.3 22 83-104 119-140 (221)
185 3l5l_A Xenobiotic reductase A; 51.0 12 0.00052 16.9 8.2 62 40-104 253-323 (363)
186 3ghy_A Ketopantoate reductase 50.9 12 0.00052 16.9 6.2 44 1-45 1-44 (335)
187 2z1m_A GDP-D-mannose dehydrata 50.3 12 0.00053 16.8 7.1 33 1-33 1-34 (345)
188 3kts_A Glycerol uptake operon 49.9 12 0.00054 16.8 6.8 61 36-104 117-178 (192)
189 2axq_A Saccharopine dehydrogen 48.5 13 0.00057 16.7 9.9 101 1-110 22-124 (467)
190 1ek6_A UDP-galactose 4-epimera 48.1 13 0.00057 16.6 6.5 31 1-32 1-32 (348)
191 1g29_1 MALK, maltose transport 48.0 13 0.00058 16.6 4.4 46 38-83 149-197 (372)
192 1y81_A Conserved hypothetical 47.5 7.8 0.00035 18.0 2.1 91 3-99 14-117 (138)
193 1v43_A Sugar-binding transport 47.3 13 0.00059 16.5 4.3 47 38-84 151-200 (372)
194 3i65_A Dihydroorotate dehydrog 47.3 13 0.00059 16.5 3.7 42 62-104 332-373 (415)
195 2awn_A Maltose/maltodextrin im 47.2 13 0.00059 16.5 4.3 55 30-84 132-192 (381)
196 1oxx_K GLCV, glucose, ABC tran 47.1 13 0.0006 16.5 4.4 47 38-84 150-199 (353)
197 2fhp_A Methylase, putative; al 46.9 14 0.0006 16.5 8.1 79 4-82 68-152 (187)
198 3m2p_A UDP-N-acetylglucosamine 46.7 14 0.00061 16.5 6.2 31 1-32 1-32 (311)
199 2v82_A 2-dehydro-3-deoxy-6-pho 46.0 14 0.00062 16.4 7.9 34 15-48 21-58 (212)
200 1z41_A YQJM, probable NADH-dep 45.9 14 0.00062 16.4 8.2 64 38-104 234-305 (338)
201 2pt6_A Spermidine synthase; tr 45.8 14 0.00062 16.4 6.6 68 3-71 140-219 (321)
202 1f76_A Dihydroorotate dehydrog 45.6 14 0.00063 16.4 8.2 42 62-104 276-317 (336)
203 1rzu_A Glycogen synthase 1; gl 45.0 14 0.00064 16.3 11.1 69 47-122 366-440 (485)
204 3gdo_A Uncharacterized oxidore 44.9 14 0.00064 16.3 6.2 100 1-117 1-110 (358)
205 1twd_A Copper homeostasis prot 44.9 14 0.00064 16.3 7.2 90 11-103 98-196 (256)
206 2g4r_A MOGA, molybdopterin bio 44.2 15 0.00066 16.2 4.1 56 1-56 1-72 (160)
207 1jvn_A Glutamine, bifunctional 44.1 15 0.00066 16.2 8.9 67 35-104 454-525 (555)
208 1izc_A Macrophomate synthase i 44.0 15 0.00067 16.2 12.2 103 15-118 28-138 (339)
209 2phj_A 5'-nucleotidase SURE; S 42.9 16 0.00069 16.1 7.6 81 3-85 1-128 (251)
210 1xi3_A Thiamine phosphate pyro 41.8 16 0.00072 16.0 12.7 86 30-120 113-210 (215)
211 3mbj_A Putative phosphomethylp 41.5 16 0.00073 16.0 7.0 77 3-81 7-111 (291)
212 2it1_A 362AA long hypothetical 41.4 16 0.00073 16.0 3.9 47 38-84 143-192 (362)
213 1o4u_A Type II quinolic acid p 41.0 17 0.00074 15.9 5.4 71 28-103 196-266 (285)
214 3czc_A RMPB; alpha/beta sandwi 41.0 17 0.00074 15.9 7.8 77 2-91 17-101 (110)
215 2i7c_A Spermidine synthase; tr 40.8 17 0.00075 15.9 8.1 68 3-71 102-181 (283)
216 1iow_A DD-ligase, DDLB, D-ALA\ 40.5 17 0.00075 15.9 4.7 56 1-57 1-65 (306)
217 3dhw_C Methionine import ATP-b 40.4 17 0.00076 15.9 4.2 46 38-83 150-198 (343)
218 2yyu_A Orotidine 5'-phosphate 40.1 17 0.00076 15.9 7.0 24 34-58 43-66 (246)
219 3fvq_A Fe(3+) IONS import ATP- 39.8 17 0.00077 15.8 4.9 46 38-83 148-196 (359)
220 2yyz_A Sugar ABC transporter, 39.2 18 0.00079 15.8 4.4 47 38-84 143-192 (359)
221 2jjm_A Glycosyl transferase, g 38.5 18 0.00081 15.7 8.6 71 48-128 286-356 (394)
222 2htm_A Thiazole biosynthesis p 38.3 18 0.00081 15.7 13.6 104 16-121 114-228 (268)
223 1inl_A Spermidine synthase; be 38.0 18 0.00082 15.6 6.2 68 3-71 114-194 (296)
224 3iuu_A MLRC-like, putative met 37.9 19 0.00083 15.6 5.1 68 32-103 278-350 (495)
225 1a53_A IGPS, indole-3-glycerol 37.7 19 0.00083 15.6 11.0 88 15-105 141-232 (247)
226 3cni_A Putative ABC type-2 tra 37.6 19 0.00084 15.6 6.8 61 4-71 11-73 (156)
227 1vrd_A Inosine-5'-monophosphat 37.5 19 0.00084 15.6 8.6 68 34-104 237-305 (494)
228 3fz9_A Glutaredoxin; oxidoredu 36.9 19 0.00086 15.5 10.0 85 14-98 6-96 (112)
229 1ygy_A PGDH, D-3-phosphoglycer 36.9 7.8 0.00035 18.0 0.8 99 1-112 2-103 (529)
230 3ihk_A Thiamin pyrophosphokina 36.8 19 0.00086 15.5 6.1 92 3-107 1-97 (218)
231 1tqx_A D-ribulose-5-phosphate 36.7 19 0.00086 15.5 8.5 104 16-122 104-223 (227)
232 2esr_A Methyltransferase; stru 36.6 19 0.00087 15.5 5.5 66 4-70 55-124 (177)
233 3gfo_A Cobalt import ATP-bindi 36.5 20 0.00087 15.5 4.3 48 38-85 153-203 (275)
234 2q1w_A Putative nucleotide sug 36.5 20 0.00087 15.5 4.7 55 2-56 20-99 (333)
235 3g3d_A UMP synthase, uridine 5 36.1 20 0.00088 15.5 7.6 105 12-116 69-186 (312)
236 2nq2_C Hypothetical ABC transp 35.6 20 0.0009 15.4 5.3 46 38-83 138-186 (253)
237 2fpo_A Methylase YHHF; structu 35.4 20 0.0009 15.4 6.3 68 4-72 78-148 (202)
238 1y0e_A Putative N-acetylmannos 35.1 21 0.00091 15.4 10.1 87 15-105 106-204 (223)
239 1h4x_A SPOIIAA, anti-sigma F f 35.1 21 0.00092 15.4 7.0 76 41-119 36-114 (117)
240 1jub_A Dihydroorotate dehydrog 34.9 21 0.00092 15.3 5.2 41 63-104 230-270 (311)
241 2gai_A DNA topoisomerase I; zi 34.8 21 0.00093 15.3 3.5 32 1-33 1-34 (633)
242 3d31_A Sulfate/molybdate ABC t 34.7 21 0.00093 15.3 4.8 47 38-84 137-186 (348)
243 1u9c_A APC35852; structural ge 34.6 21 0.00093 15.3 4.5 32 1-33 4-49 (224)
244 3gjy_A Spermidine synthase; AP 34.2 21 0.00095 15.3 7.1 69 4-72 114-190 (317)
245 2r79_A Periplasmic binding pro 34.2 21 0.00095 15.3 5.5 49 38-93 51-99 (283)
246 1l2t_A Hypothetical ABC transp 33.7 22 0.00097 15.2 5.5 47 38-84 155-204 (235)
247 2c20_A UDP-glucose 4-epimerase 33.3 13 0.0006 16.5 1.5 30 3-32 1-31 (330)
248 2hxt_A L-fuconate dehydratase; 32.9 22 0.001 15.1 5.6 79 32-113 252-332 (441)
249 1w0m_A TIM, triosephosphate is 32.8 22 0.001 15.1 14.3 102 14-118 102-220 (226)
250 3gz3_A Dihydroorotate dehydrog 32.5 23 0.001 15.1 3.7 60 62-123 265-331 (354)
251 1d3g_A Dihydroorotate dehydrog 32.1 23 0.001 15.1 4.6 39 64-103 287-325 (367)
252 1ec7_A Glucarate dehydratase; 31.8 23 0.001 15.0 8.5 73 32-107 239-314 (446)
253 1gte_A Dihydropyrimidine dehyd 31.3 24 0.0011 15.0 4.8 27 76-102 787-813 (1025)
254 3ih1_A Methylisocitrate lyase; 31.2 24 0.0011 15.0 10.9 114 7-121 6-155 (305)
255 3iv3_A Tagatose 1,6-diphosphat 31.2 24 0.0011 15.0 4.9 61 44-104 201-279 (332)
256 1mw9_X DNA topoisomerase I; de 31.2 18 0.0008 15.7 1.8 29 3-31 1-29 (592)
257 1qyi_A ZR25, hypothetical prot 31.1 24 0.0011 14.9 4.7 32 13-44 218-251 (384)
258 3bfj_A 1,3-propanediol oxidore 31.1 24 0.0011 14.9 7.7 65 3-70 33-113 (387)
259 3ij5_A 3-deoxy-D-manno-octulos 30.5 24 0.0011 14.9 7.2 74 36-116 40-132 (211)
260 1vkz_A Phosphoribosylamine--gl 30.3 25 0.0011 14.9 7.8 117 1-120 13-174 (412)
261 3khj_A Inosine-5-monophosphate 30.2 25 0.0011 14.9 11.5 60 41-104 112-172 (361)
262 2e6f_A Dihydroorotate dehydrog 30.2 25 0.0011 14.9 4.4 58 63-122 233-297 (314)
263 2p41_A Type II methyltransfera 30.1 25 0.0011 14.8 6.2 54 44-114 146-202 (305)
264 1vhc_A Putative KHG/KDPG aldol 30.1 25 0.0011 14.8 8.4 25 83-107 115-139 (224)
265 3h74_A Pyridoxal kinase; PSI-I 29.9 25 0.0011 14.8 8.3 77 1-80 1-105 (282)
266 2zbt_A Pyridoxal biosynthesis 29.8 25 0.0011 14.8 7.1 58 61-121 195-259 (297)
267 3kru_A NADH:flavin oxidoreduct 29.2 26 0.0011 14.7 5.6 68 34-104 228-305 (343)
268 1q74_A 1D-MYO-inosityl 2-aceta 29.0 22 0.00098 15.2 2.0 35 1-35 1-43 (303)
269 1rw7_A YDR533CP; alpha-beta sa 28.7 26 0.0012 14.7 4.8 33 1-33 1-49 (243)
270 3e9m_A Oxidoreductase, GFO/IDH 28.6 26 0.0012 14.7 8.5 98 1-110 1-103 (330)
271 2chu_A CEUE, enterochelin upta 28.5 20 0.00091 15.4 1.7 16 39-54 88-103 (296)
272 3lab_A Putative KDPG (2-keto-3 27.9 27 0.0012 14.6 9.8 99 7-108 19-142 (217)
273 2hnk_A SAM-dependent O-methylt 27.6 27 0.0012 14.6 6.9 65 4-68 86-170 (239)
274 2v3c_C SRP54, signal recogniti 27.6 9.1 0.0004 17.6 -0.2 12 105-116 281-292 (432)
275 3iwa_A FAD-dependent pyridine 27.3 17 0.00074 15.9 1.1 26 1-26 1-26 (472)
276 3kkl_A Probable chaperone prot 27.1 28 0.0012 14.5 4.2 33 1-33 1-49 (244)
277 1r8j_A KAIA; circadian clock p 27.1 28 0.0013 14.5 9.2 75 6-84 12-89 (289)
278 2ixe_A Antigen peptide transpo 27.0 28 0.0013 14.5 6.3 71 38-115 166-246 (271)
279 1mxs_A KDPG aldolase; 2-keto-3 26.7 29 0.0013 14.5 7.1 44 7-50 32-79 (225)
280 3mgl_A Sulfate permease family 26.6 29 0.0013 14.5 4.3 69 34-104 34-107 (130)
281 2qfm_A Spermine synthase; sper 26.5 29 0.0013 14.4 7.1 55 4-58 212-279 (364)
282 3ip3_A Oxidoreductase, putativ 26.4 29 0.0013 14.4 4.2 103 1-118 1-113 (337)
283 1wx0_A Transaldolase; structur 26.4 29 0.0013 14.4 4.3 68 45-121 85-161 (223)
284 3iq0_A Putative ribokinase II; 26.0 18 0.00081 15.7 1.1 12 1-12 1-12 (330)
285 1f06_A MESO-diaminopimelate D- 25.7 30 0.0013 14.4 7.7 102 1-119 1-105 (320)
286 2r6j_A Eugenol synthase 1; phe 25.7 30 0.0013 14.4 5.1 53 3-55 10-68 (318)
287 3kd9_A Coenzyme A disulfide re 25.5 30 0.0013 14.3 5.1 24 1-24 1-24 (449)
288 3ddm_A Putative mandelate race 25.5 30 0.0013 14.3 7.9 83 32-117 209-293 (392)
289 3hgj_A Chromate reductase; TIM 25.4 30 0.0013 14.3 8.2 67 35-104 238-316 (349)
290 3f5d_A Protein YDEA; unknow pr 25.3 18 0.00081 15.7 1.0 81 1-82 1-99 (206)
291 1wo8_A Methylglyoxal synthase; 25.2 30 0.0014 14.3 6.5 66 3-71 1-71 (126)
292 2yzr_A Pyridoxal biosynthesis 25.2 30 0.0014 14.3 7.5 58 62-122 229-293 (330)
293 1sui_A Caffeoyl-COA O-methyltr 25.2 30 0.0014 14.3 6.9 65 4-68 105-179 (247)
294 1mjf_A Spermidine synthase; sp 25.1 30 0.0014 14.3 6.3 66 4-71 99-182 (281)
295 3eww_A Ompdecase, orotidine-5' 24.7 31 0.0014 14.2 7.6 104 11-114 16-132 (260)
296 2b7n_A Probable nicotinate-nuc 24.5 31 0.0014 14.2 7.8 70 28-102 185-254 (273)
297 1wbh_A KHG/KDPG aldolase; lyas 24.0 32 0.0014 14.2 11.2 96 6-108 21-139 (214)
298 1nrz_A PTS system, sorbose-spe 23.9 32 0.0014 14.2 2.6 103 3-113 27-157 (164)
299 3adn_A Spermidine synthase; am 23.9 15 0.00069 16.1 0.5 68 3-71 107-187 (294)
300 1tv5_A Dhodehase, dihydroorota 23.8 32 0.0014 14.1 7.9 68 36-104 314-401 (443)
301 1u0t_A Inorganic polyphosphate 23.8 32 0.0014 14.1 6.6 101 1-121 1-130 (307)
302 2jbm_A Nicotinate-nucleotide p 23.7 32 0.0014 14.1 9.1 71 28-103 200-270 (299)
303 1vzw_A Phosphoribosyl isomeras 23.7 32 0.0014 14.1 8.5 76 36-114 149-237 (244)
304 3f4l_A Putative oxidoreductase 23.5 33 0.0015 14.1 5.0 44 76-119 65-112 (345)
305 1uir_A Polyamine aminopropyltr 23.4 33 0.0015 14.1 7.7 68 4-72 102-185 (314)
306 3h8q_A Thioredoxin reductase 3 23.4 33 0.0015 14.1 10.1 86 12-98 3-94 (114)
307 3e82_A Putative oxidoreductase 23.4 33 0.0015 14.1 6.9 98 4-117 8-112 (364)
308 1eix_A Orotidine 5'-monophosph 23.4 33 0.0015 14.1 5.1 34 36-69 27-62 (245)
309 2r6z_A UPF0341 protein in RSP 23.4 33 0.0015 14.1 7.8 97 4-109 106-220 (258)
310 3hh1_A Tetrapyrrole methylase 23.3 33 0.0015 14.1 7.6 75 5-84 33-116 (117)
311 3beo_A UDP-N-acetylglucosamine 23.3 33 0.0015 14.1 11.9 47 76-127 301-347 (375)
312 3dip_A Enolase; structural gen 23.0 34 0.0015 14.0 8.0 75 32-109 223-299 (410)
313 3c48_A Predicted glycosyltrans 22.8 34 0.0015 14.0 9.9 69 48-126 327-395 (438)
314 1jcn_A Inosine monophosphate d 22.8 34 0.0015 14.0 8.1 95 6-104 270-386 (514)
315 1o2d_A Alcohol dehydrogenase, 22.7 34 0.0015 14.0 6.0 64 4-70 41-119 (371)
316 1ps9_A 2,4-dienoyl-COA reducta 22.6 34 0.0015 14.0 7.7 67 35-104 227-308 (671)
317 3fdx_A Putative filament prote 22.4 34 0.0015 14.0 3.2 20 38-57 98-117 (143)
318 1rvg_A Fructose-1,6-bisphospha 22.3 34 0.0015 14.0 6.2 66 33-101 153-249 (305)
319 1oc2_A DTDP-glucose 4,6-dehydr 22.3 35 0.0015 13.9 3.1 28 1-28 1-30 (348)
320 2qx2_A Sex pheromone staph-CAM 22.2 35 0.0015 13.9 2.4 20 62-81 171-190 (344)
321 3iwp_A Copper homeostasis prot 22.1 35 0.0016 13.9 6.6 41 32-72 165-206 (287)
322 2gek_A Phosphatidylinositol ma 21.8 35 0.0016 13.9 12.3 73 47-128 283-355 (406)
323 2vpi_A GMP synthase; guanine m 21.8 35 0.0016 13.9 2.1 47 4-53 25-74 (218)
324 1d4a_A DT-diaphorase, quinone 21.8 35 0.0016 13.9 3.3 31 1-32 1-39 (273)
325 2hcf_A Hydrolase, haloacid deh 21.7 35 0.0016 13.9 3.9 23 79-103 173-195 (234)
326 2ift_A Putative methylase HI07 21.6 36 0.0016 13.9 5.2 23 32-54 62-84 (201)
327 1zu4_A FTSY; GTPase, signal re 21.5 36 0.0016 13.9 6.4 69 36-104 181-261 (320)
328 1zfj_A Inosine monophosphate d 21.3 36 0.0016 13.8 7.9 67 35-104 234-301 (491)
329 1vlj_A NADH-dependent butanol 21.3 36 0.0016 13.8 9.2 65 3-70 43-122 (407)
330 3bpp_A 1510-N membrane proteas 21.2 36 0.0016 13.8 6.8 36 37-72 29-67 (230)
331 3g1v_A Orotidine 5'-phosphate 21.2 36 0.0016 13.8 9.5 57 3-59 12-76 (228)
332 1n2z_A Vitamin B12 transport p 21.2 36 0.0016 13.8 5.1 50 39-96 50-99 (245)
333 3gfv_A Uncharacterized ABC tra 21.2 20 0.00088 15.5 0.5 20 38-57 87-106 (303)
334 1wl8_A GMP synthase [glutamine 20.9 37 0.0016 13.8 7.0 77 5-83 2-79 (189)
335 2yvl_A TRMI protein, hypotheti 20.9 37 0.0016 13.8 1.9 89 4-99 114-207 (248)
336 3aek_A Light-independent proto 20.7 37 0.0017 13.7 4.5 18 109-126 415-432 (437)
337 1qpo_A Quinolinate acid phosph 20.7 37 0.0017 13.7 9.4 72 27-103 196-267 (284)
338 1vc4_A Indole-3-glycerol phosp 20.7 37 0.0017 13.7 9.8 83 18-104 146-235 (254)
339 2vpq_A Acetyl-COA carboxylase; 20.6 37 0.0017 13.7 7.4 54 3-56 1-83 (451)
340 1wa3_A 2-keto-3-deoxy-6-phosph 20.4 38 0.0017 13.7 9.0 89 7-102 16-128 (205)
341 2qk4_A Trifunctional purine bi 20.4 38 0.0017 13.7 5.4 59 4-62 25-104 (452)
342 1g6h_A High-affinity branched- 20.3 38 0.0017 13.7 5.4 47 38-85 163-212 (257)
343 3c1o_A Eugenol synthase; pheny 20.3 38 0.0017 13.7 4.9 52 3-54 4-65 (321)
344 1sny_A Sniffer CG10964-PA; alp 20.1 38 0.0017 13.7 8.1 83 2-84 20-110 (267)
345 3eye_A PTS system N-acetylgala 20.1 38 0.0017 13.7 2.7 62 4-70 33-100 (168)
No 1
>1w25_A Stalked-cell differentiation controlling protein; two-component system, response regulator, diguanylate cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A*
Probab=100.00 E-value=7.6e-32 Score=217.53 Aligned_cols=130 Identities=28% Similarity=0.465 Sum_probs=123.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6366773888999999999872-998999859799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
.|||||||++.+|..++.+|+. ||.|.+|.||.+|++.+.+++||+||+|+.||+|||+++|+.||+.+.++++|||++
T Consensus 2 ~rILiVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~pdlvllD~~mP~~dG~e~~~~ir~~~~~~~iPvI~l 81 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLI 81 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 77999939999999999999978999999899999999997089999998488899999999999972877899968999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 167878899999966996486579888999999999999999999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSDLRKNE 133 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~~~~~~ 133 (140)
|+..+.+...+++++||+|||+||+++.+|.++|++++|.+....+++...
T Consensus 82 T~~~~~~~~~~a~~~Ga~dyl~Kp~~~~~L~~ri~~llr~~~~~~eL~~~e 132 (459)
T 1w25_A 82 TALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQRE 132 (459)
T ss_dssp ECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHCCCHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 779998999998760862123035325654320023332222102345567
No 2
>3crn_A Response regulator receiver domain protein, CHEY- like; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.98 E-value=6.4e-31 Score=211.74 Aligned_cols=123 Identities=28% Similarity=0.376 Sum_probs=117.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|||+|||||||++.++..++.+|+. ||.|..|.||.+|++.+++++||+||+|+.||++||+++|+.||+. .+.+||
T Consensus 1 M~mkrILiVDDd~~~~~~l~~~L~~~g~~v~~a~s~~~al~~l~~~~~dlvilD~~lp~~~G~el~~~ir~~--~~~~pv 78 (132)
T 3crn_A 1 MSLKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKL--RPGMKK 78 (132)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHH--CTTSEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCE
T ss_conf 998889999699999999999999869979980999999999987799999971457998799999999984--899979
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8731678788999999669964865798889999999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~ 125 (140)
|++|++++.+...+|+++||+|||+|||++++|.++|+++|++++.
T Consensus 79 I~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~L~~~~~ 124 (132)
T 3crn_A 79 IMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEK 124 (132)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 9998649999999999879989998979999999999999999951
No 3
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida}
Probab=99.97 E-value=3e-31 Score=213.83 Aligned_cols=125 Identities=22% Similarity=0.351 Sum_probs=117.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 86366773888999999999872-99899985979999999848-99899986136887706899999843368997178
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHH-HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~-~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI 80 (140)
-.|||||||++.+|..++.+|+. ||.|..|.||.+|++.++.+ +||+||+|+.||++||+++|+.||+.+.++++|||
T Consensus 124 ~~~VLvVDD~~~~r~~i~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~DlIl~D~~MP~mdG~e~~~~iR~~~~~~~iPII 203 (259)
T 3luf_A 124 QIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAII 203 (259)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 73578860535679999999996298056424045899997348995299962777787848999999837677896199
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 73167878899999966996486579888999999999999999999
Q T0634 81 LLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
Q Consensus 81 ~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~ 127 (140)
++|+....+.+.+|+++||+|||+|||++++|.++|++.|++.+.++
T Consensus 204 ~lTa~~~~~~~~~~l~aG~dd~l~KP~~~~~L~~~i~~~L~~~~~~~ 250 (259)
T 3luf_A 204 GISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQFN 250 (259)
T ss_dssp EEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC--
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99788998999999987998999798999999999999999999996
No 4
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.97 E-value=2.3e-31 Score=214.46 Aligned_cols=127 Identities=24% Similarity=0.358 Sum_probs=121.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|+|.|||||||++.++..++.+|+. ||.+..|.||++|++.+++.+||+||+|+.||++||+++|+.||+.+.++++||
T Consensus 1 m~m~~ILIVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~dlIi~D~~mP~~dG~el~~~ir~~~~~~~iPi 80 (138)
T 3c3m_A 1 MSLYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCE
T ss_conf 99898999979999999999999987999999899999999997479999995388999989999999983865579988
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 873167878899999966996486579888999999999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~ 127 (140)
|++|+.++...+.+++++|++|||.|||++.+|..+|+++|++++...
T Consensus 81 I~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~L~r~~~~~ 128 (138)
T 3c3m_A 81 LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRHSIA 128 (138)
T ss_dssp EEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC----
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 988547989999999867998899898999999999999999641155
No 5
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630}
Probab=99.97 E-value=1.2e-30 Score=210.15 Aligned_cols=128 Identities=32% Similarity=0.484 Sum_probs=118.0
Q ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 998-6366773888999999999872-99899985979999999848998999861368877068999998433689971
Q T0634 1 MSL-KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 1 m~m-~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
||| .|||||||++.++..++.+|+. ||.|.+|.||++|++.+++++||+||+|+.||++||+++|+.+++. +.+|
T Consensus 1 M~~~~rILiVDDd~~~~~~l~~~L~~~G~~v~~a~~~~eAl~~l~~~~~dlillD~~mP~~dG~el~~~~~~~---~~~p 77 (136)
T 2qzj_A 1 MSLQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNV---TTCP 77 (136)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTT---CCCC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHC---CCCC
T ss_conf 9978759999799999999999999879999998999999988751799999970899999971799999846---9998
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78731678788999999669964865798889999999999999999999999
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSDLRK 131 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~~~~ 131 (140)
||++|+.++.+.+.+|+++||+|||+|||++++|.++|+++||+.+.+.+-+.
T Consensus 78 iI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~LrR~~~~~~~eG 130 (136)
T 2qzj_A 78 IVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMNSYVNNEG 130 (136)
T ss_dssp EEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHC------
T ss_pred EEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999748999999999879988998989999999999999998401431899
No 6
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.97 E-value=2.5e-30 Score=208.04 Aligned_cols=120 Identities=30% Similarity=0.455 Sum_probs=115.7
Q ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 366773888999999999872-9989998597999999984899899986136887706899999843368997178731
Q T0634 5 KILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lt 83 (140)
|||||||++.+|..++.+|+. ||.|.+|.||.+|++.+.+.+||+||+|+.||++||+++|+.||+.+.++.+|||++|
T Consensus 9 kILiVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~pDlillD~~mp~~dG~el~~~ir~~~~~~~~PiI~lT 88 (154)
T 3gt7_A 9 EILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEE
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 09999899999999999999879999980772778764226554346761144788778999999855235677089960
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 67878899999966996486579888999999999999999
Q T0634 84 SSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 84 a~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
++++.+.+.+|+++||+|||+|||++++|.++|+++++..+
T Consensus 89 ~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~ 129 (154)
T 3gt7_A 89 ILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp CCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 68999999999983998089798999999999999999999
No 7
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C
Probab=99.97 E-value=3.4e-30 Score=207.27 Aligned_cols=120 Identities=28% Similarity=0.427 Sum_probs=115.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|+ +|||||||++.++..++.+|+. ||.|.+|.||.+|++.+++++||+||+|+.||++||+++|+.||+.+.++++||
T Consensus 1 M~-krILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~dlillD~~mP~~~G~el~~~ir~~~~~~~~Pi 79 (122)
T 3gl9_A 1 MS-KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPV 79 (122)
T ss_dssp -C-CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCE
T ss_pred CC-CCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEHHHHCCCCCCHHHHHHHHHCCCCCCCCE
T ss_conf 99-86999979999999999999987999999878799999988347675517553258987699999984754679998
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 873167878899999966996486579888999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr 121 (140)
|++|++++.+...+++++||+|||.|||++++|.++|+++|+
T Consensus 80 I~lt~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~v~~~L~ 121 (122)
T 3gl9_A 80 IVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 999568999999999986998899898999999999999968
No 8
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.97 E-value=2.1e-30 Score=208.49 Aligned_cols=119 Identities=33% Similarity=0.554 Sum_probs=113.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 86366773888999999999872-99899985979999999848998999861368877068999998433689971787
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
|+|||||||++.++..++.+|+. ||.|.+|.||.+|++.+.+++||+||+|+.||++||+++|+.+++. +++|||+
T Consensus 1 M~rILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvilD~~mp~~~g~~~~~~l~~~---~~ipvI~ 77 (120)
T 2a9o_A 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKT---SSVPILM 77 (120)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHH---CCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHC---CCCCEEE
T ss_conf 9989999799999999999999879999998787999999983699789842566798827899999867---9994999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 3167878899999966996486579888999999999999999
Q T0634 82 LFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
+|++++.+...+|+++||+|||+|||++++|.++|++++|+++
T Consensus 78 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrR~~ 120 (120)
T 2a9o_A 78 LSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120 (120)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC--
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 9889999999999986998999898999999999999997469
No 9
>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.97 E-value=2.9e-30 Score=207.62 Aligned_cols=123 Identities=25% Similarity=0.511 Sum_probs=113.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 6366773888999999999872-99899-985979999999848998999861368877068999998433689971787
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVI-ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~-~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
+|||||||++.+|..++.+|+. ||.|+ +|+||.+|++.++++.||+||+|+.||++||+++|+.||+. +.+||||
T Consensus 14 ~rILIVDDd~~~r~~l~~~L~~~G~~vv~~a~~g~eal~~~~~~~pDlillDi~MP~mdGle~~~~ir~~---~~~piii 90 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASK---RIAPIVV 90 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHT---TCSCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHC---CCCCEEE
T ss_conf 8899982989999999999998699799998999999999983799999996404586079999999856---9999899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 316787889999996699648657988899999999999999999999
Q T0634 82 LFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSDL 129 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~~ 129 (140)
+|++++.+...+|+++||+|||+|||++.+|..+|+..+++.+.....
T Consensus 91 lTa~~~~~~~~~al~~Ga~dyl~KP~~~~~l~~~i~~~l~~~~~~~~~ 138 (205)
T 1s8n_A 91 LTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITAL 138 (205)
T ss_dssp EEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 956788999999998298421438999999999999999864431024
No 10
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H}
Probab=99.97 E-value=5.1e-30 Score=206.13 Aligned_cols=125 Identities=22% Similarity=0.306 Sum_probs=118.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 6366773888999999999872---9989998597999999984899899986136887706899999843368997178
Q T0634 4 KKILIIDQQDFSRIELKNFLDS---EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~---~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI 80 (140)
.|||||||++.+|..++.+|+. ||.|..|.||.+|++.+++.+||+||+|+.||++||+++|+.||+.+.++.+|||
T Consensus 9 ~~ILiVDDd~~~~~~l~~~L~~~~~g~~v~~a~~g~eAl~~l~~~~pdlIilD~~mP~~dG~el~~~ir~~~~~~~ipvI 88 (143)
T 3cnb_A 9 FSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVI 88 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 88999949999999999999827898089998999999999982799999982989999869999999847889997599
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 731678788999999669964865798889999999999999999999
Q T0634 81 LLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSD 128 (140)
Q Consensus 81 ~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~ 128 (140)
++|+..+.+...+++++||+|||.|||++++|.++|++++++++..++
T Consensus 89 ~ls~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~~~e 136 (143)
T 3cnb_A 89 AMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKATSE 136 (143)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC----
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCHHHCC
T ss_conf 974489999999999779989997999999999999999970577507
No 11
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.97 E-value=1.1e-29 Score=204.18 Aligned_cols=120 Identities=32% Similarity=0.506 Sum_probs=114.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|+.||||||||++.++..++.+|+. ||.|.+|.||.+|++.+++++||+||+|+.||++||+++|+.+|+. +.+|+
T Consensus 1 M~~p~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~mp~~~G~~~~~~~r~~---~~~p~ 77 (123)
T 1xhf_A 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQ---ANVAL 77 (123)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHH---CCCEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHH---CCCCE
T ss_conf 999999999898999999999999769889998986999999983474322200123676563999998871---69978
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 87316787889999996699648657988899999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
|++|++++.+...+++++||+|||.|||++++|.++|+++|++.
T Consensus 78 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~v~~~L~R~ 121 (123)
T 1xhf_A 78 MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 99992489999999998698879869899999999999998772
No 12
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.97 E-value=6.4e-30 Score=205.51 Aligned_cols=119 Identities=28% Similarity=0.515 Sum_probs=112.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 86366773888999999999872-99899985979999999848998999861368877068999998433689971787
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
|.|||||||++.++..++.+|+. ||.|.+|.||++|++.+++++||+||+|+.||++||+++|+.||+. +.+|||+
T Consensus 1 M~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dliilD~~mP~~~G~~~~~~ir~~---~~~pii~ 77 (121)
T 1zh2_A 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQW---SAVPVIV 77 (121)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTT---CCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHC---CCCEEEE
T ss_conf 9849999799999999999999879999996788999999982699889960345699738999999722---5772999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 3167878899999966996486579888999999999999999
Q T0634 82 LFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
+|++++.+...+|+++||+|||+|||++++|.++|++++|+.+
T Consensus 78 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrr~~ 120 (121)
T 1zh2_A 78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 (121)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 9834899999999987998999798999999999999988767
No 13
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684}
Probab=99.97 E-value=4.9e-30 Score=206.26 Aligned_cols=122 Identities=23% Similarity=0.279 Sum_probs=116.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6366773888999999999872-998999859799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
.|||||||++.++..++.+|+. ||.|.+|.||.+|++.+.+.+|||||+|+.||++||+++|+.||+.+.++++|||++
T Consensus 9 ~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~pdliilD~~mP~~dG~el~~~lr~~~~~~~iPiI~l 88 (147)
T 2zay_A 9 WRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIAL 88 (147)
T ss_dssp EEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 88999979999999999999987999999899999999998279999986368998755899999984756689728997
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1678788999999669964865798889999999999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~ 125 (140)
|++.+.+.+.+++++||+|||.|||++++|.++|+++|++...
T Consensus 89 T~~~~~~~~~~a~~~G~~d~l~KP~~~~~L~~~i~~~L~~~~~ 131 (147)
T 2zay_A 89 SGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYE 131 (147)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 3689999999999869988997989999999999999998744
No 14
>2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.97 E-value=6.9e-31 Score=211.54 Aligned_cols=122 Identities=27% Similarity=0.520 Sum_probs=117.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|+ +|||||||++.++..++.+|+. ||.|.++.||++|++.+++++||+||+|+.||++||+++|+.||+.+.++++||
T Consensus 1 M~-krILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~mp~~dG~el~~~lr~~~~~~~~pi 79 (127)
T 2jba_A 1 MA-RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPV 79 (127)
T ss_dssp -C-CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCE
T ss_pred CC-CCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 99-88999979999999999999987999999899999999986079999998078899989999999984787799929
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 87316787889999996699648657988899999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
|++|++++.+.+.+++++||+|||.|||++.+|.++|++++|+.
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~lrr~ 123 (127)
T 2jba_A 80 VMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 99989899999999998699899989899999999999997250
No 15
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.97 E-value=9.7e-30 Score=204.39 Aligned_cols=127 Identities=21% Similarity=0.437 Sum_probs=119.1
Q ss_pred CCCC-EEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9986-366773888999999999872-99899985979999999848998999861368877068999998433689971
Q T0634 1 MSLK-KILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 1 m~m~-rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
|||+ |||||||++.++..++.+|+. ||.|.+|.||++|++.+++.+||+||+|+.||+++|+++|+.+|+.. +.+|
T Consensus 1 M~mk~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~s~~eal~~l~~~~~dlillD~~mp~~~G~~~~~~ir~~~--~~~p 78 (137)
T 3cfy_A 1 MSLRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQND--IPTS 78 (137)
T ss_dssp --CCCEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTT--CCCE
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCC
T ss_conf 99998699997999999999999998799999989999999999857999999838999997299999999738--9981
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 787316787889999996699648657988899999999999999999999
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSDL 129 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~~ 129 (140)
||++|++++.+...+++++||+|||+|||++++|.++|+.++++.+..+.+
T Consensus 79 iI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~r~~~e~~~ 129 (137)
T 3cfy_A 79 VIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLV 129 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999988899999999996798589989899999999999999998899982
No 16
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.97 E-value=3.8e-30 Score=206.90 Aligned_cols=124 Identities=31% Similarity=0.545 Sum_probs=116.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|+ +|||||||++.++..++.+|+. ||.|.+|.||.+|++.+++++||+||+|+.||++||+++++.+|... +.+||
T Consensus 2 M~-krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~dlvilD~~mp~~~G~~~~~~ir~~~--~~~~i 78 (136)
T 1mvo_A 2 MN-KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQK--LMFPI 78 (136)
T ss_dssp CC-CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CC-CCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCC--CCCEE
T ss_conf 88-8899997999999999999998899999989999999998618999999768989998699999998449--99808
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 873167878899999966996486579888999999999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~ 127 (140)
|++|++++.+.+.+|+++||+|||+|||++++|.++|++++++.....
T Consensus 79 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~r~~~~~ 126 (136)
T 1mvo_A 79 LMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEIRA 126 (136)
T ss_dssp EEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC----
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999776999999999985998478799999999999999998877638
No 17
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46}
Probab=99.97 E-value=5.3e-30 Score=206.04 Aligned_cols=123 Identities=22% Similarity=0.378 Sum_probs=115.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCC-----CCCHHHHHHHHHCCCC
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688-----7706899999843368
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIG-----ENSPNLCLKLKRSKGL 74 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~-----~dG~~~~~~ir~~~~~ 74 (140)
|+|.|||||||++.+|..++.+|+. ||.|.+|.||++|++.+++++||+||+|+.||+ +||+++|+.||+. .
T Consensus 1 M~~~kILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dliilDl~mP~~~~~G~dGl~~l~~ir~~--~ 78 (140)
T 2qr3_A 1 MSLGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ--Y 78 (140)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHH--C
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH--C
T ss_conf 99998999979999999999999978999999899999999997279998999523676777774099999999986--8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 997178731678788999999669964865798889999999999999999
Q T0634 75 KNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
Q Consensus 75 ~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~ 125 (140)
+++|||++|++++.+.+.+|+++||+|||+|||+.++|+.+|++.+++.+.
T Consensus 79 ~~~pvI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~~ 129 (140)
T 2qr3_A 79 RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKD 129 (140)
T ss_dssp TTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC--
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 999489996899999999999869988998979999999999999998388
No 18
>3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.97 E-value=1.7e-30 Score=209.14 Aligned_cols=129 Identities=18% Similarity=0.350 Sum_probs=120.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 86366773888999999999872-99899985979999999848998999861368877068999998433689971787
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
..|||||||++.+|..++.+|+. ||.|.+|.||.+|++.+++.+||+||+|+.||++||+++|+.||+.+..+.+|||+
T Consensus 7 k~~ILIVDDd~~~r~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~dliilD~~mP~~dG~el~~~ir~~~~~~~ipiI~ 86 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVM 86 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99299997989999999999997899999989999999999718999999838999999999999998475568994999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31678788999999669964865798889999999999999999999999
Q T0634 82 LFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSDLRK 131 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~~~~ 131 (140)
+|++++.+.+.+++++||+|||+|||++++|+++|+.++++.+....-+.
T Consensus 87 lT~~~~~~~~~~a~~~G~~d~l~KP~~~~~Ll~~v~~~l~~~r~~~~~eG 136 (142)
T 3cg4_A 87 LTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQTGNEG 136 (142)
T ss_dssp EECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHHC-----
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 97869999999999869988998999999999999999998887887789
No 19
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.97 E-value=2.2e-29 Score=202.13 Aligned_cols=125 Identities=20% Similarity=0.321 Sum_probs=116.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 986366773888999999999872-9989998597999999984899899986136887706899999843368997178
Q T0634 2 SLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
Q Consensus 2 ~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI 80 (140)
+.||||||||++.+|..++.+|+. ||.|.+|.||.+|++.+++.+||+||+|+.||++||+++++.+|+. .+++|||
T Consensus 2 a~P~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dliilD~~mP~~dGlell~~l~~~--~~~~pvI 79 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILAL--DPDLPMI 79 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHH--CTTSCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHH--CCCCCEE
T ss_conf 99989999799999999999999879989997899999998544799889712578999899999999984--8789489
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 731678788999999669964865798889999999999999999999
Q T0634 81 LLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSD 128 (140)
Q Consensus 81 ~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~ 128 (140)
++||+++.+.+.+|++.||+|||.|||+.++|..+|+..++.++...+
T Consensus 80 ~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~v~~a~~~~~l~~e 127 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRRLVME 127 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 898999999999999879988987959999999999999999999999
No 20
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A
Probab=99.97 E-value=8.5e-30 Score=204.75 Aligned_cols=119 Identities=34% Similarity=0.592 Sum_probs=113.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|+ +|||||||++.+|..++.+|+. ||.|.+|.||.+|++.+.+++||+||+|+.||++||+++|+.||+.+ ++|+
T Consensus 1 M~-~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~mP~~~G~~~~~~ir~~~---~~~i 76 (120)
T 3f6p_A 1 MD-KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKY---DMPI 76 (120)
T ss_dssp CC-CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTC---CSCE
T ss_pred CC-CCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCC---CCCE
T ss_conf 99-7299994999999999999998899999989999999999708999999859999989999999997279---9968
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 87316787889999996699648657988899999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
|++|++++.+.+.+|+++||+|||.|||++++|.++|++++|++
T Consensus 77 I~lt~~~~~~~~~~a~~~G~~d~l~KP~~~~~L~~~i~~~lrR~ 120 (120)
T 3f6p_A 77 IMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQ 120 (120)
T ss_dssp EEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 99976699999999998599836879999999999999997689
No 21
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.97 E-value=3.7e-29 Score=200.78 Aligned_cols=127 Identities=24% Similarity=0.341 Sum_probs=118.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 9986366773888999999999872-99899985979999999848--99899986136887706899999843368997
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENSPNLCLKLKRSKGLKNV 77 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~--~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~i 77 (140)
|+|.|||||||++.+|..++.+|+. ||.|.+|.||++|++.+.+. +||+|++|+.||+++|++++..+|+. .+++
T Consensus 1 M~m~kILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eAl~~~~~~~~~~dliilD~~mp~~~g~~~~~~~~~~--~~~~ 78 (143)
T 3jte_A 1 MSLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKI--TPHM 78 (143)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHH--CTTC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHH--CCCC
T ss_conf 99998999979999999999999987999999779999999998368971699965888777889999999985--8999
Q ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1787316787889999996699648657988899999999999999999999
Q T0634 78 PLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSDL 129 (140)
Q Consensus 78 PiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~~ 129 (140)
|||++|++++.+...+|+++||+|||+|||++++|.++|+..+++++...+.
T Consensus 79 ~iI~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~l~~e~ 130 (143)
T 3jte_A 79 AVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLLMEN 130 (143)
T ss_dssp EEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHHC--
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999986799999999998699899958999999999999999999999999
No 22
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.97 E-value=3.3e-29 Score=201.10 Aligned_cols=119 Identities=26% Similarity=0.493 Sum_probs=113.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6366773888999999999872-998999859799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
.|||||||++.+|..++.+|+. ||.|.+|.||++|++.+++++||+||+|+.||++||+++|+.+|+.+ +.+|||++
T Consensus 1 mrILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlvi~D~~mP~~dG~e~~~~~~~~~--~~~pii~l 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTT--CCSCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCEEEEE
T ss_conf 9899995799999999999998899999989999999997569996999818999997078999999728--99869999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 167878899999966996486579888999999999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
|++++.+.+.+|+++||+|||+|||++++|.++|++++|+.+
T Consensus 79 t~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrR~~ 120 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 765999999999986999999798999999999999975746
No 23
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.97 E-value=9e-29 Score=198.37 Aligned_cols=127 Identities=20% Similarity=0.312 Sum_probs=116.6
Q ss_pred CCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCC-CCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 998-6366773888999999999872998999859799999998489-98999861368877068999998433689971
Q T0634 1 MSL-KKILIIDQQDFSRIELKNFLDSEYLVIESKNEKEALEQIDHHH-PDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 1 m~m-~rILivDD~~~~r~~l~~~L~~~~~v~~a~~~~eal~~~~~~~-pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
|+| +|||||||++.++..++.+|+.+|.|.+|.||.+|++.+.+.. +|+||+|+.||++||+++++.||+. .+++|
T Consensus 1 M~mn~rILiVDDd~~~~~~l~~~L~~~~~v~~a~~~~eAl~~l~~~~p~dlvllD~~mP~~~G~~ll~~ir~~--~~~~~ 78 (151)
T 3kcn_A 1 MSLNERILLVDDDYSLLNTLKRNLSFDFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLI--SPNSV 78 (151)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHTTTSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHH--CSSCE
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCE
T ss_conf 9999719999499999999999998799899976789999999856997099984899898759999999981--99987
Q ss_pred EEEEECCCCHHHHHHHHHCC-CCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78731678788999999669-9648657988899999999999999999999
Q T0634 79 LILLFSSEHKEAIVNGLHSG-ADDYLTKPFNRNDLLSRIEIHLRTQNYYSDL 129 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~G-a~dyl~KP~~~~eL~~~i~~~lr~~~~~~~~ 129 (140)
||++|++.+.+...++++.| |+|||.|||++++|..+|+..+++.+...+.
T Consensus 79 iI~lt~~~~~~~~~~a~~~G~~~dyl~KP~~~~~L~~~i~~~l~~~~~~~~~ 130 (151)
T 3kcn_A 79 YLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDLVTSK 130 (151)
T ss_dssp EEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9997347999999999967888736879999999999999999999999999
No 24
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.97 E-value=1.1e-29 Score=204.10 Aligned_cols=120 Identities=21% Similarity=0.394 Sum_probs=115.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6366773888999999999872-998999859799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
+|||||||++.++..++.+|+. ||.|..|.||.+|++.+++.+||+||+|+.||++||+++++.||+.+.++++|||++
T Consensus 2 krILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlil~D~~mP~~~G~el~~~ir~~~~~~~iPii~l 81 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAV 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 73999959999999999999987999999899999999998479999998689899998999999981888799979999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 16787889999996699648657988899999999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
|++++.+...+++++|++|||+|||++.+|.++|+.+++++
T Consensus 82 t~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~r~ 122 (124)
T 1mb3_A 82 TAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122 (124)
T ss_dssp C------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCC
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 88799899999997799899989899999999999998439
No 25
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.96 E-value=9.1e-29 Score=198.33 Aligned_cols=121 Identities=21% Similarity=0.312 Sum_probs=114.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6366773888999999999872-998999859799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
.|||||||++.++..++.+|+. ||.|..|.||.+|++.+.++.||+|++|+.||++||+++++.||+.. +++|||++
T Consensus 130 ~~vLvVdD~~~~~~~~~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlil~D~~mP~~dG~e~~~~ir~~~--~~~pii~l 207 (254)
T 2ayx_A 130 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLG--LTLPVIGV 207 (254)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHH--CCSCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHC--CCCCEEEE
T ss_conf 8899991989999999999998799999979879999998628999999807877885669999999738--99978999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 16787889999996699648657988899999999999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYY 126 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~ 126 (140)
||+.+.+.+.+|+++|++|||.|||+.++|..+++.++++.+..
T Consensus 208 ta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~r~r~~ 251 (254)
T 2ayx_A 208 TANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVRKS 251 (254)
T ss_dssp ESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78899999999998699899979899999999999999999981
No 26
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.96 E-value=3.3e-29 Score=201.07 Aligned_cols=122 Identities=27% Similarity=0.427 Sum_probs=114.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|-.+|||||||++.+|..++.+|+. ||.|.+|.||.+|++.+++.+||+||+|+.||++||+++++.||+.+ +++||
T Consensus 1 mm~~rILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~dliilD~~mP~~~G~el~~~ir~~~--~~~pi 78 (124)
T 1srr_A 1 MMNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVID--ENIRV 78 (124)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHC--TTCEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCCE
T ss_conf 9988599997999999999999998699899959989999999807998899853699998899999999609--99989
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 873167878899999966996486579888999999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
|++|++++.+...+++++||+|||+|||++++|..+|+.+|+.++
T Consensus 79 i~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~L~~~~ 123 (124)
T 1srr_A 79 IIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLKS 123 (124)
T ss_dssp EEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC--
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 999888999999999987998999898999999999999987567
No 27
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.96 E-value=1.6e-28 Score=196.81 Aligned_cols=125 Identities=17% Similarity=0.332 Sum_probs=116.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 63667738889999999998729989998597999999984899899986136887706899999843368997178731
Q T0634 4 KKILIIDQQDFSRIELKNFLDSEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lt 83 (140)
||||||||++..+..++.+|+.||.|..|.||++|++.+.+++||+||+|+.||++||+++++.||+. .+++|+|++|
T Consensus 2 P~ILiVDD~~~~~~~l~~~L~~g~~v~~a~~~~eAl~~l~~~~~dlil~D~~mP~~~G~~ll~~ir~~--~~~~~vI~lt 79 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDDFDVLTAQGAEAAIAILEEEWVQVIICDQRMPGRTGVDFLTEVRER--WPETVRIIIT 79 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTTSCEEEESSHHHHHHHHHHSCEEEEEEESCCSSSCHHHHHHHHHHH--CTTSEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHC--CCCCCEEEEE
T ss_conf 98999969899999999999879999996549999999983789889963445424389999999971--8999689898
Q ss_pred CCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 678788999999-66996486579888999999999999999999999
Q T0634 84 SSEHKEAIVNGL-HSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSDLR 130 (140)
Q Consensus 84 a~~~~~~~~~a~-~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~~~ 130 (140)
++++.+...+++ ++||+|||+|||++++|..+++.++++.+...+.+
T Consensus 80 ~~~~~~~~~~a~~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~~~~e~~ 127 (139)
T 2jk1_A 80 GYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFTLARENE 127 (139)
T ss_dssp SCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 979989999999975997188698999999999999999999999999
No 28
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.96 E-value=5.1e-29 Score=199.92 Aligned_cols=122 Identities=30% Similarity=0.494 Sum_probs=113.9
Q ss_pred CC-CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 99-86366773888999999999872-99899985979999999848998999861368877068999998433689971
Q T0634 1 MS-LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 1 m~-m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
|| .++||||||++.++..++.+|+. ||.|.+|.||.+|++.+++.+||+||+|+ ||+++|+++|+.+|+. .+++|
T Consensus 1 Ms~~~~ILiVDD~~~~~~~l~~~L~~~G~~v~~a~~~~eal~~l~~~~~dlvl~D~-mp~~~Glel~~~ir~~--~~~~p 77 (142)
T 2qxy_A 1 MSLTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREE--FPDTK 77 (142)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHH--CTTCE
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECC-CCCCHHHHHHHHHHHH--CCCCC
T ss_conf 99999699998989999999999998799999989999999999857999998537-8740399999999986--89998
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 78731678788999999669964865798889999999999999999
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~ 125 (140)
||++|++++.+.+.+|+++||+|||+|||++++|.++|+.++++...
T Consensus 78 iI~lT~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~~ 124 (142)
T 2qxy_A 78 VAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp EEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 89997889999999999869988998989999999999999856720
No 29
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa PAO1} PDB: 3i5a_A*
Probab=99.96 E-value=8.9e-29 Score=198.39 Aligned_cols=122 Identities=20% Similarity=0.331 Sum_probs=115.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 86366773888999999999872--9989998597999999984899899986136887706899999843368997178
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS--EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~--~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI 80 (140)
..+||||||++.++..++..|.. ||.|.+|.||.+|++.+.+.+||+||+|+.||++||+++|+.||+.+.++++|||
T Consensus 18 ~~~iLiVDD~~~~~~~~~~~L~~~~g~~v~~a~~g~eal~~~~~~~pdlil~D~~mP~~dG~el~~~ir~~~~~~~ipii 97 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPII 97 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 98899996999999999999844598189998999999999973699999986999999999999999745245785299
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 73167878899999966996486579888999999999999999
Q T0634 81 LLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 81 ~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
++|+.++.+...+++++||+|||.||++..++..++.+.++...
T Consensus 98 ~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~el~~~~~~~l~~~~ 141 (358)
T 3bre_A 98 VLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSRSYI 141 (358)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 99677516789999974876063268651235677776665555
No 30
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolution, signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.96 E-value=5.3e-29 Score=199.79 Aligned_cols=120 Identities=34% Similarity=0.557 Sum_probs=111.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9986366773888999999999872-99899985979999999848998999861368-877068999998433689971
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDII-GENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp-~~dG~~~~~~ir~~~~~~~iP 78 (140)
|+ +|||||||++.++..++.+|+. ||.|.+|.||.+|++.+++++||+||+|+.|| ++||+++|++||+.+.++++|
T Consensus 4 M~-krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~pdliilD~~mp~~~~G~~l~~~ir~~~~~~~ip 82 (127)
T 2gkg_A 4 MS-KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVP 82 (127)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSC
T ss_pred CC-CCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 48-85999989999999999999987999999899999999998579999999735567998999999998388889982
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 78731678788999999669964865798889999999999999
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~ 122 (140)
||++|+.++. ...+++++||+|||.|||++++|.++|+++|++
T Consensus 83 Ii~lt~~~~~-~~~~~~~~Ga~dyl~KP~~~~eL~~~i~~~L~~ 125 (127)
T 2gkg_A 83 IVIIGNPDGF-AQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp EEEEECGGGH-HHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred EEEEECCCHH-HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 9999889618-799999769988997989999999999998768
No 31
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.96 E-value=5.9e-28 Score=193.27 Aligned_cols=124 Identities=23% Similarity=0.385 Sum_probs=116.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 86366773888999999999872-99899985979999999848998999861368877068999998433689971787
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
.+|||||||++.++..++.+|+. ||.|..|.||.+|++.+++++||+||+|+.||++||+++|+.||+. .+++|||+
T Consensus 14 k~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~l~~~~~dlvi~D~~mP~~~G~el~~~ir~~--~~~~~iI~ 91 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQ--YPSTTRIL 91 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHH--CTTSEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH--CCCCCEEE
T ss_conf 9979999699999999999999879999998999999999982799989860558999889999999986--89992899
Q ss_pred EECCCCHHHHHHHHHCCC-CEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 316787889999996699-64865798889999999999999999999
Q T0634 82 LFSSEHKEAIVNGLHSGA-DDYLTKPFNRNDLLSRIEIHLRTQNYYSD 128 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga-~dyl~KP~~~~eL~~~i~~~lr~~~~~~~ 128 (140)
+|++.+.+...++++.|+ +|||+|||++++|..+|+.++++++..++
T Consensus 92 lT~~~~~~~~~~a~~~g~v~~yl~KP~~~~~L~~~i~~~l~~~~~~~e 139 (153)
T 3hv2_A 92 LTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHSERE 139 (153)
T ss_dssp ECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 978899999999997698888788989999999999999999999999
No 32
>3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396}
Probab=99.96 E-value=3e-28 Score=195.09 Aligned_cols=126 Identities=20% Similarity=0.273 Sum_probs=115.9
Q ss_pred CC--CCEEEEECCCHHHHHHHHHHHHC-C--CEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 99--86366773888999999999872-9--9899985979999999848998999861368877068999998433689
Q T0634 1 MS--LKKILIIDQQDFSRIELKNFLDS-E--YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLK 75 (140)
Q Consensus 1 m~--m~rILivDD~~~~r~~l~~~L~~-~--~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~ 75 (140)
|| -+|||||||++.++..++.+|+. + +.|..|.||.+|++.+++.+||+||+|+.||++||+++|+.||+.+.++
T Consensus 1 msl~~~rILvVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~DlillD~~mP~~dG~el~~~ir~~~~~~ 80 (144)
T 3kht_A 1 MSLRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQ 80 (144)
T ss_dssp ----CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTT
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 99889899999589999999999999689985999989999999999847998899984159999999999998378779
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC-HHHHHHHHHHHHHHHHHH
Q ss_conf 971787316787889999996699648657988-899999999999999999
Q T0634 76 NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFN-RNDLLSRIEIHLRTQNYY 126 (140)
Q Consensus 76 ~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~-~~eL~~~i~~~lr~~~~~ 126 (140)
++|||++|++.+.+...+|+++||+|||.|||+ .++|.++|++++++....
T Consensus 81 ~~PvI~lT~~~~~~~~~~a~~~Ga~~~l~KP~~~~~~L~~~i~~~l~~~~~~ 132 (144)
T 3kht_A 81 HTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLTV 132 (144)
T ss_dssp TCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9909999788999999999986999999799999999999999999986656
No 33
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.96 E-value=4e-28 Score=194.35 Aligned_cols=121 Identities=19% Similarity=0.326 Sum_probs=112.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-C--CEEEEECCHHHHHHHHHH-------CCCCEEEEECCCCCCCCHHHHHHHHHCC
Q ss_conf 86366773888999999999872-9--989998597999999984-------8998999861368877068999998433
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-E--YLVIESKNEKEALEQIDH-------HHPDLVILDMDIIGENSPNLCLKLKRSK 72 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~--~~v~~a~~~~eal~~~~~-------~~pdlii~D~~lp~~dG~~~~~~ir~~~ 72 (140)
=||||||||++.++..++..|+. | |.|.+|.||.+|++.+++ ..||+||+|+.||++||+++++.||+++
T Consensus 2 ~krILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eal~~l~~~~~~~~~~~pdlillD~~mP~~dG~el~~~ir~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 98299997999999999999996799818999899999999998615554057998899988899996489999998487
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 689971787316787889999996699648657988899999999999999
Q T0634 73 GLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 73 ~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
.++++|||++|++.+.+...+|+++||+|||+|||++.+|.++|++.++..
T Consensus 82 ~~~~iPvi~ls~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~i~~~~ 132 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFW 132 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 668997899957899999999998799899979999999999999999998
No 34
>1zgz_A Torcad operon transcriptional regulatory protein TORR; two-component system, gene regulation, transcription factor, TMAO respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.96 E-value=5.5e-28 Score=193.45 Aligned_cols=120 Identities=26% Similarity=0.458 Sum_probs=113.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|. .|||||||++.++..++.+|+. ||.|..|.||.+|++.+++.+||+||+|+.||++||+++++.+|.. +.+||
T Consensus 1 M~-~~ILvVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dliilD~~lp~~~g~~~~~~~r~~---~~~pi 76 (122)
T 1zgz_A 1 MP-HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRER---STVGI 76 (122)
T ss_dssp -C-CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTT---CCCEE
T ss_pred CC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEEHHCCCCCHHHHHHHHHHC---CCCCE
T ss_conf 99-859999799999999999999639999998999999999751599688650010463025789998722---56635
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 873167878899999966996486579888999999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
|++|++++.+.+.+|+++||+|||+|||++++|.++|++++|+.+
T Consensus 77 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~R~~ 121 (122)
T 1zgz_A 77 ILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID 121 (122)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 999944999999999987998999798999999999999998756
No 35
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis}
Probab=99.96 E-value=7.7e-28 Score=192.54 Aligned_cols=126 Identities=19% Similarity=0.319 Sum_probs=116.5
Q ss_pred CCC----CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 998----6366773888999999999872-99899985979999999848998999861368877068999998433689
Q T0634 1 MSL----KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLK 75 (140)
Q Consensus 1 m~m----~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~ 75 (140)
||| +|||||||++..+..++.+|+. ||.|..|.||.+|++.+.+.+||+||+|+.||++||+++++.||+. .+
T Consensus 1 m~~~~~~~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvilD~~mP~~~G~e~l~~ir~~--~~ 78 (154)
T 2rjn_A 1 MSLNYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKS--YP 78 (154)
T ss_dssp ---CCSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHH--CT
T ss_pred CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHH--CC
T ss_conf 9899999989999699999999999999879989998999999999970799999966988888818999999983--89
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCC-CEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 971787316787889999996699-64865798889999999999999999999
Q T0634 76 NVPLILLFSSEHKEAIVNGLHSGA-DDYLTKPFNRNDLLSRIEIHLRTQNYYSD 128 (140)
Q Consensus 76 ~iPiI~lta~~~~~~~~~a~~~Ga-~dyl~KP~~~~eL~~~i~~~lr~~~~~~~ 128 (140)
++|||++|++++.+..++|++.|| ++||.|||++++|..+|+..++..+...+
T Consensus 79 ~~piI~lt~~~~~~~~~~ai~~Gavd~yl~KP~~~~~L~~~v~~~l~~~~~~~e 132 (154)
T 2rjn_A 79 DIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFLREE 132 (154)
T ss_dssp TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 979899983489999999997698885798979999999999999999999999
No 36
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.96 E-value=3.5e-28 Score=194.71 Aligned_cols=118 Identities=25% Similarity=0.496 Sum_probs=110.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9986366773888999999999872-99899-985979999999848998999861368877068999998433689971
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVI-ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~-~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
|+ +|||||||++.+|..++.+|+. ||.|. +|.||.+|++.+++.+||+||+|+.||++||+++++.||+.. +++|
T Consensus 1 M~-~rvLivDD~~~~r~~l~~~L~~~g~~v~~~A~~g~eal~~~~~~~~dliilD~~mp~~~G~e~~~~ir~~~--~~~~ 77 (120)
T 1tmy_A 1 MG-KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKID--PNAK 77 (120)
T ss_dssp -C-CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHC--TTCC
T ss_pred CC-CCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCC
T ss_conf 99-86999939999999999999987998999988999999999846898899845689997899999999868--8997
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 7873167878899999966996486579888999999999999
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr 121 (140)
||++|++++.+...+++++||+|||.|||++++|..+++.+.|
T Consensus 78 ii~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~v~k 120 (120)
T 1tmy_A 78 IIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVSK 120 (120)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC-
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCC
T ss_conf 8999734899999999986998999798999999999999709
No 37
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative; 2.04A {Staphylococcus aureus}
Probab=99.96 E-value=3.5e-28 Score=194.67 Aligned_cols=122 Identities=18% Similarity=0.372 Sum_probs=112.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-C-CEEE-EECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 9986366773888999999999872-9-9899-98597999999984899899986136887706899999843368997
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-E-YLVI-ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNV 77 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~-~~v~-~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~i 77 (140)
|||.|||||||++..|..++.+|+. + +.++ +|.||.+|++.+++.+||+||+|+.||++||++++++||+. .+++
T Consensus 1 Msm~~ILIvDD~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~~~~~~pDlvllDi~mP~~~G~e~~~~ir~~--~~~~ 78 (133)
T 3b2n_A 1 MSLTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKK--HLNI 78 (133)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHT--TCSC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCC
T ss_conf 99999999959999999999999968997899998999999999986699999996888999999999999974--8899
Q ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 17873167878899999966996486579888999999999999999
Q T0634 78 PLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 78 PiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
|||++|++++.+...+++++||++||.||+++++|..+|+.+++.++
T Consensus 79 ~iIvlT~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~ai~~v~~g~r 125 (133)
T 3b2n_A 79 KVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEK 125 (133)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC---
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 79999688999999999987998899898999999999999997189
No 38
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT}
Probab=99.96 E-value=1.8e-28 Score=196.50 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=112.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|||+|||||||++.+|..++.+|+. ||.|..|.||.+|++.+++++||+||+|+.||++||+++++.||+.+..+.+||
T Consensus 1 ms~~~vLiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~dlillD~~mP~~~G~el~~~lr~~~~~~~~pi 80 (127)
T 3i42_A 1 MSLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 99888999957899999999999987999999899999999998089999986278999845999999984767899949
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8731678788999999669964865798889999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~ 122 (140)
|++|++++.+....+. .|+++||+|||++++|.++++++...
T Consensus 81 i~lt~~~~~~~~~~~~-~g~~~~L~KP~~~~~L~~~l~~l~G~ 122 (127)
T 3i42_A 81 VAVSGFAKNDLGKEAC-ELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEECC-CTTCCHHHH-HHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEECCCCHHHHHHHH-HCCCEEEECCCCHHHHHHHHHHHCCC
T ss_conf 9997888799999997-17878997989999999999980488
No 39
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.96 E-value=4.7e-28 Score=193.90 Aligned_cols=122 Identities=16% Similarity=0.357 Sum_probs=114.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CC--EEEEECCHHHHHHHHHHC----------CCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf 86366773888999999999872-99--899985979999999848----------998999861368877068999998
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EY--LVIESKNEKEALEQIDHH----------HPDLVILDMDIIGENSPNLCLKLK 69 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~--~v~~a~~~~eal~~~~~~----------~pdlii~D~~lp~~dG~~~~~~ir 69 (140)
.+|||||||++.++..++.+|+. |+ .|..|.||++|++.+++. .||+||+|++||++||+++|+.||
T Consensus 6 ~~~ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlvllD~~mP~~dG~el~~~ir 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 98299998999999999999997799706999899999999998513111111257999899818899998599999998
Q ss_pred HCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 4336899717873167878899999966996486579888999999999999999
Q T0634 70 RSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 70 ~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
+.+.++++|||++|++.+.+.+.+++++||+||++|||+..+|..+|+++++...
T Consensus 86 ~~~~~~~iPiI~lT~~~~~~~~~~~~~~G~~~yl~KP~~~~~L~~~i~~~l~~~~ 140 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp TSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 5824489948999789999999999987998999898999999999999999986
No 40
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri}
Probab=99.96 E-value=4e-28 Score=194.30 Aligned_cols=119 Identities=27% Similarity=0.430 Sum_probs=108.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 86366773888999999999872-99899985979999999848998999861368877068999998433689971787
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
.+|||||||++.++..++.+|+. ||.|.+|.||.+|++.+++..||+||+|+.||++||+++|+.||+.+.. ..|+|+
T Consensus 6 skrILiVDDd~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~pdlii~D~~mP~~dG~el~~~ir~~~~~-~~~~ii 84 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVA-NQPKIL 84 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCS-SCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCC-CCCCEE
T ss_conf 9879999799999999999999889999998999999999970798999996898888999999999845888-989389
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 31678788999999669964865798889999999999999
Q T0634 82 LFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~ 122 (140)
+|+..+.+...+++++||+||+.|||++++|.++|++++++
T Consensus 85 l~s~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~ll~~ 125 (132)
T 3lte_A 85 VVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp EECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 99559999999999879989997989999999999999956
No 41
>3hdv_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.09A {Pseudomonas putida KT2440}
Probab=99.96 E-value=3.7e-28 Score=194.57 Aligned_cols=122 Identities=21% Similarity=0.308 Sum_probs=112.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 86366773888999999999872-9989998597999999984-899899986136887706899999843368997178
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDH-HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~-~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI 80 (140)
.+|||||||++.+|..++.+|+. ||.+.+|.||++|+..+.+ .+||+||+|+.||++||+++++.||+.+ .+.+|||
T Consensus 7 r~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~~~eA~~~l~~~~~~dlii~D~~mP~~~G~el~~~ir~~~-~~~~piI 85 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE-RAALSII 85 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST-TTTCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCC-CCCCEEE
T ss_conf 988999979999999999999987999999889999999997569985998536596963999999998557-9998399
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 731678788999999669964865798889999999999999999
Q T0634 81 LLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
Q Consensus 81 ~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~ 125 (140)
++|++++.+...+|+++||+|||.|||++++|..+|+.+|+...-
T Consensus 86 ~lT~~~~~~~~~~a~~~G~~dyl~KP~~~~~L~~~i~~~L~~~eG 130 (136)
T 3hdv_A 86 VVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEG 130 (136)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 997889999999999879978998989999999999999988079
No 42
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.96 E-value=1.7e-28 Score=196.65 Aligned_cols=124 Identities=16% Similarity=0.229 Sum_probs=114.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 86366773888999999999872-99899985979999999848998999861368877068999998433689971787
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
.+|||||||++.++..++.+|+. ||.|..|.||.+|++.+++++||+||+|+.||++||+++++.||+.+..+.+|||+
T Consensus 6 ~prILiVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~dlillD~~mP~~dG~el~~~ir~~~~~~~iPiI~ 85 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVV 85 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 87799996999999999999998799999989999999998850444210457889998999999998472579997899
Q ss_pred EECCCCH-HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3167878-89999996699648657988899999999999999999
Q T0634 82 LFSSEHK-EAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYY 126 (140)
Q Consensus 82 lta~~~~-~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~ 126 (140)
+|+.... +...+++++|++|||.|||++++|..+|+.++++...-
T Consensus 86 lt~~~~~~~~~~~~~~~G~~~yl~KP~~~~~L~~~l~~~l~~~~~~ 131 (140)
T 3grc_A 86 VSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAEG 131 (140)
T ss_dssp ECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC--
T ss_pred EECCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9567986999999997799889989999999999999999616751
No 43
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.96 E-value=6e-28 Score=193.21 Aligned_cols=120 Identities=19% Similarity=0.268 Sum_probs=113.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|+..|||||||++..|..++.+|+. ||.|..|.+|++|++.+.+.+||+||+|+.||++||+++++.+|+. .+++|+
T Consensus 1 M~~~~ILiVDDd~~~r~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvi~D~~mp~~~G~~l~~~ir~~--~~~~~v 78 (126)
T 1dbw_A 1 MQDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDL--KINIPS 78 (126)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHT--TCCCCE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH--CCCCEE
T ss_conf 999989999599999999999999879999998999999998633699899986898765468999999960--999969
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 8731678788999999669964865798889999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~ 122 (140)
|++|++++.+...+|+++||+|||+|||++++|..+|+.++++
T Consensus 79 I~lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~a~~~ 121 (126)
T 1dbw_A 79 IVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9997409999999999879988998979989999999999999
No 44
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.96 E-value=4.4e-28 Score=194.09 Aligned_cols=120 Identities=21% Similarity=0.342 Sum_probs=113.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCE-EEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 86366773888999999999872-998-9998597999999984899899986136887706899999843368997178
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYL-VIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~-v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI 80 (140)
..|||||||++.+|..++.+|+. ||. |..|.||++|++.+++++||+||+|+.||++||+++++.||+.+.++++|||
T Consensus 6 k~rVLiVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~~~piI 85 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFI 85 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 88899994999999999999998799399998999999999972899899994588999879999999838556898399
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 731678788999999669964865798889999999999999
Q T0634 81 LLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
Q Consensus 81 ~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~ 122 (140)
++|++++.+...+++++|+++||+|||+.++|.++|++++..
T Consensus 86 ~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~l~~vl~~ 127 (129)
T 1p6q_A 86 ILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp ECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 998139999999999879998998989999999999999985
No 45
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes}
Probab=99.96 E-value=5.3e-28 Score=193.58 Aligned_cols=118 Identities=18% Similarity=0.255 Sum_probs=111.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6366773888999999999872-998999859799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
-|||||||++.+|..++.+|+. ||.|..|.||++|++.+.+++||+||+|+.||++||+++++.||+.. +++|||++
T Consensus 8 ~kILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eAl~~~~~~~~dliilD~~mP~~dG~el~~~lr~~~--~~~pvI~l 85 (137)
T 3hdg_A 8 LKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGG--AKPYVIVI 85 (137)
T ss_dssp CCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTT--CCCEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCC--CCCCEEEE
T ss_conf 8899996889999999999997799999989999999999847888899824578999999999999509--89958999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 16787889999996699648657988899999999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
|++++.+...+|+++||+|||.|||++++|..+|+.+++.+
T Consensus 86 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 126 (137)
T 3hdg_A 86 SAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp CCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 89999899999886798579979999999999999999899
No 46
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, protein structure initiative; 2.40A {Rhodospirillum rubrum atcc 11170}
Probab=99.96 E-value=9.7e-28 Score=191.93 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=111.2
Q ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC-CC--EEEEECCHHHHHHHHH---------HCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 998-6366773888999999999872-99--8999859799999998---------489989998613688770689999
Q T0634 1 MSL-KKILIIDQQDFSRIELKNFLDS-EY--LVIESKNEKEALEQID---------HHHPDLVILDMDIIGENSPNLCLK 67 (140)
Q Consensus 1 m~m-~rILivDD~~~~r~~l~~~L~~-~~--~v~~a~~~~eal~~~~---------~~~pdlii~D~~lp~~dG~~~~~~ 67 (140)
||| .+||||||++.++..++.+|+. || .|..|.||.+|++.+. +.+||+||+|+.||++||+++|+.
T Consensus 1 M~~~~~ILiVDDd~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~~~pdliilD~~mP~~~G~el~~~ 80 (152)
T 3heb_A 1 MSLSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKL 80 (152)
T ss_dssp ----CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 98997699998999999999999997799628999788899999873102667876049999999677778640789999
Q ss_pred HHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 9843368997178731678788999999669964865798889999999999999
Q T0634 68 LKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
Q Consensus 68 ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~ 122 (140)
||+.+.++++|||++|+..+.+...+|+++||+|||+|||+.++|..+|+++...
T Consensus 81 ir~~~~~~~iPvI~lS~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~l~~~ 135 (152)
T 3heb_A 81 VKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLF 135 (152)
T ss_dssp HHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9838355899689985689999999999879989997989999999999999999
No 47
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 1cye_A 2che_A 2chf_A 2pl9_A* 2pmc_A ...
Probab=99.96 E-value=1.2e-27 Score=191.45 Aligned_cols=120 Identities=21% Similarity=0.386 Sum_probs=114.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CC-EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 6366773888999999999872-99-899985979999999848998999861368877068999998433689971787
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EY-LVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~-~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
-|||||||++.+|..++.+|+. || .|.+|.||.+|++.+++++||+||+|+.||++||+++++.||+.+..+++|||+
T Consensus 5 lriLiVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~~a~~~~~~~~~dlvi~D~~mP~~dG~el~~~ir~~~~~~~~piI~ 84 (128)
T 1jbe_A 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLM 84 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf 99999969899999999999986995699979999999997628999999969999998799999999756779992899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 316787889999996699648657988899999999999999
Q T0634 82 LFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
+|++++.+...+++++|++|||.|||++++|..+++..+++.
T Consensus 85 lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~l~~~l~r~ 126 (128)
T 1jbe_A 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 989899999999998699899989899999999999999874
No 48
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.96 E-value=2.2e-27 Score=189.66 Aligned_cols=121 Identities=19% Similarity=0.350 Sum_probs=111.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-C--CEEEEECCHHHHHHHHHHC-------CCCEEEEECCCCCCCCHHHHHHHHHCC
Q ss_conf 86366773888999999999872-9--9899985979999999848-------998999861368877068999998433
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-E--YLVIESKNEKEALEQIDHH-------HPDLVILDMDIIGENSPNLCLKLKRSK 72 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~--~~v~~a~~~~eal~~~~~~-------~pdlii~D~~lp~~dG~~~~~~ir~~~ 72 (140)
-++||||||++..+..++.+|+. + |.|..|.||.+|++.+++. .||+||+|+.||++||+++|++||+++
T Consensus 8 ~~~ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pDliilD~~mP~~dG~el~~~ir~~~ 87 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 87 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 89899995999999999999997699818999899999999999620100367899899808999986479999999587
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 689971787316787889999996699648657988899999999999999
Q T0634 73 GLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 73 ~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
.++++|||++|++++.+...+|+++||+|||+|||+.++|..+|+++++..
T Consensus 88 ~~~~iPiI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 88 DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 878983899827899999999998699889979899999999999999887
No 49
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.95 E-value=1.3e-27 Score=191.17 Aligned_cols=118 Identities=26% Similarity=0.475 Sum_probs=107.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6366773888999999999872-998999859799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
.+||||||++.+|..++.+|+. ||.|..|.||++|++.++++.||+||+|+.||++||+++|+.||+.. +++|||++
T Consensus 6 ~tiLiVdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvl~D~~mP~~~G~e~~~~i~~~~--~~~pvi~l 83 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICDLRMPQIDGLELIRRIRQTA--SETPIIVL 83 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSCCSEEEECCCSSSSCTHHHHHHHHHTT--CCCCEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCC--CCCCEEEE
T ss_conf 7499997999999999999997899999989999999998628999999938789998999999998369--99958999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHH-HHHHHHHHH
Q ss_conf 16787889999996699648657988899999-999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLS-RIEIHLRTQ 123 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~-~i~~~lr~~ 123 (140)
|+.++.+...+|+++||+|||+||+++.++.. +|+..+...
T Consensus 84 t~~~~~~~~~~~~~~Ga~dyl~KP~~~~~~~~~~v~~~l~~~ 125 (394)
T 3eq2_A 84 SGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp ---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 805868999999986998699889965777677888998877
No 50
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.95 E-value=1.2e-27 Score=191.33 Aligned_cols=126 Identities=23% Similarity=0.346 Sum_probs=116.5
Q ss_pred CC-CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 99-86366773888999999999872-99899985979999999848998999861368877068999998433689971
Q T0634 1 MS-LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 1 m~-m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
|| .||||||||++.+|..++.+|+. ||.|..+.||.+|++.+...+||+||+|+.||++||+++|+.||+. .+.+|
T Consensus 1 Mt~kp~ILIVDD~~~~r~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvllDi~mp~~~G~~~~~~l~~~--~~~~~ 78 (208)
T 1yio_A 1 MTAKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAI--SDGIP 78 (208)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHT--TCCCC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHH--HCCCC
T ss_conf 9889979999699999999999999779999997899999999884598699972454687885300577887--33573
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78731678788999999669964865798889999999999999999999
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSD 128 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~ 128 (140)
||++|++.+.+...+++++||+|||+||+++++|..+|+..++.......
T Consensus 79 iI~lt~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~l~~~~~~~~ 128 (208)
T 1yio_A 79 IVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQ 128 (208)
T ss_dssp EEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79998628799999999678988985551378899999999976334322
No 51
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.95 E-value=3.1e-28 Score=195.02 Aligned_cols=114 Identities=30% Similarity=0.450 Sum_probs=105.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 86366773888999999999872-99899985979999999848998999861368877068999998433689971787
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
|+|||||||++.+|..++.+|+. ||.|.+|.||++|++.+++++||+||+|+.||++||+++|+.||+.+ +++|||+
T Consensus 1 MkrILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~l~~~~~dlvi~D~~mP~~~G~el~~~ir~~~--~~~pii~ 78 (116)
T 3a10_A 1 MKRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKK--KDAKIIL 78 (116)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHC--TTCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCC--CCCCEEE
T ss_conf 98799995999999999999998799999988999999999817999999738999989999999999529--9997999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 316787889999996699648657988899999999999
Q T0634 82 LFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHL 120 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~l 120 (140)
+|++++... ++...||+|||+|||++++|.++|+++|
T Consensus 79 lt~~~~~~~--~~~~~Ga~~~l~KP~~~~~L~~~v~~~L 115 (116)
T 3a10_A 79 LTAYSHYRS--DMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EESCGGGGG--CGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EECCCCHHH--HHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 988789999--9982699889989999999999999973
No 52
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.95 E-value=9.1e-28 Score=192.10 Aligned_cols=120 Identities=24% Similarity=0.357 Sum_probs=111.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 86366773888999999999872-99899985979999999848998999861368877068999998433689971787
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
-+|||||||++.+|..++.+|+. ||.|.+|.||.+|++.+++++||+||+|+.||++||+++|+.||+.. +++|||+
T Consensus 7 gkkILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~~Al~~l~~~~~DliilD~~mP~~~G~~l~~~ir~~~--~~~pii~ 84 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRG--DQTPVLV 84 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTT--CCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCC--CCCCEEE
T ss_conf 99899996989999999999998899999989999999986458998898325679999999999999619--8998999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCC-HHHHHHHHHHHHHHHH
Q ss_conf 316787889999996699648657988-8999999999999999
Q T0634 82 LFSSEHKEAIVNGLHSGADDYLTKPFN-RNDLLSRIEIHLRTQN 124 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl~KP~~-~~eL~~~i~~~lr~~~ 124 (140)
+|++.+.+...+++++||+|||.|||. .++|..+|.++|+..-
T Consensus 85 lt~~~~~~~~~~~~~~G~~~yl~KP~~~~~~L~~~i~~~L~~~~ 128 (130)
T 3eod_A 85 ISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 (130)
T ss_dssp EECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC---
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 98999999999999869988998999979999999999830761
No 53
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.95 E-value=4.3e-28 Score=194.13 Aligned_cols=128 Identities=21% Similarity=0.322 Sum_probs=117.9
Q ss_pred CC-CCEEEEECCCHHHHHHHHHHHHC-C-CEEEEECCHHHHHHHHHHC-CCCEEEEECCCC-CCCCHHHHHHHHHCCCCC
Q ss_conf 99-86366773888999999999872-9-9899985979999999848-998999861368-877068999998433689
Q T0634 1 MS-LKKILIIDQQDFSRIELKNFLDS-E-YLVIESKNEKEALEQIDHH-HPDLVILDMDII-GENSPNLCLKLKRSKGLK 75 (140)
Q Consensus 1 m~-m~rILivDD~~~~r~~l~~~L~~-~-~~v~~a~~~~eal~~~~~~-~pdlii~D~~lp-~~dG~~~~~~ir~~~~~~ 75 (140)
|+ ..+||||||++.+|..++.+|+. | |.|.+|.||.+|++.+.+. +||+||+|+.|| +++|+++++.+|+.+.++
T Consensus 1 m~~~~~ILiVDD~~~~r~~~~~~L~~~G~~~v~~a~~g~eal~~l~~~~~~dlii~D~~mP~~~~g~~l~~~~r~~~~~~ 80 (140)
T 3lua_A 1 MSLDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 99999699996999999999999986799089998999999999971899859998289999998369999987433468
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97178731678788999999669964865798889999999999999999999
Q T0634 76 NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSD 128 (140)
Q Consensus 76 ~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~ 128 (140)
++|||++|++++.+...+|+++|++||++|||++++|.++|++.+++....++
T Consensus 81 ~ipiI~lT~~~~~~~~~~a~~~G~~d~l~KP~~~~~L~~~v~~~l~~~~~~re 133 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQRFRE 133 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC------
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99779750789999999999879989998989999999999999998899966
No 54
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.95 E-value=1.1e-27 Score=191.68 Aligned_cols=122 Identities=27% Similarity=0.456 Sum_probs=114.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 998636677388899999999987-2998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLD-SEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~-~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|+.||||||||++..+..++..|+ .||.|..|.||.+|++.+.++.||+||+|+.||+++|+++|+.+|.. .+.+||
T Consensus 5 ~~~pkILiVeDd~~~~~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~~dlvilD~~lp~~~g~~~~~~ir~~--~~~~~i 82 (233)
T 1ys7_A 5 VTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAM--DNDVPV 82 (233)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHT--TCCCCE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCC--CCCCCC
T ss_conf 999879999799999999999999789999998999999999985898299973023333322210010014--553331
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 873167878899999966996486579888999999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
|++|++++.+.+++|+++||+|||.|||++.+|.+++++.+|+..
T Consensus 83 iilt~~~~~~~~~~al~~GAddyl~KP~~~~eL~a~i~~~~r~~~ 127 (233)
T 1ys7_A 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCC
T ss_conf 235578999999999986998899868864634332324422222
No 55
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.95 E-value=2.9e-27 Score=188.97 Aligned_cols=118 Identities=20% Similarity=0.334 Sum_probs=112.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6366773888999999999872-998999859799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
||||||||++.++..++.+|+. ||.|..|.|+.+|++.+.+..||+||+|+.||++||+++++.||+.. +.+|||++
T Consensus 1 kRILIVDDd~~i~~~l~~~L~~~G~~V~~a~s~~eAl~~l~~~~~DlvllDl~mP~~dGlell~~ir~~~--p~~pVIvl 78 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWMPDGDGVNFIDFIKENS--PDSVVIVI 78 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBCCSEEEEESEETTEETTTHHHHHHHHC--TTCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCC--CCCCCCCC
T ss_conf 9699992899999999999997799899979999999998717999999979899999999999999639--98754455
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 16787889999996699648657988899999999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
|++++.+..++|+++||.||+.|||++++|..+|+..++..
T Consensus 79 T~~~~~~~av~Al~~GA~Dyl~KP~~~~~L~~~I~~ale~~ 119 (368)
T 3dzd_A 79 TGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp ECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 67799999999997487632058853799999999999999
No 56
>3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.95 E-value=6.3e-27 Score=186.86 Aligned_cols=122 Identities=23% Similarity=0.368 Sum_probs=113.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 86366773888999999999872-99899-985979999999848998999861368-8770689999984336899717
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYLVI-ESKNEKEALEQIDHHHPDLVILDMDII-GENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~v~-~a~~~~eal~~~~~~~pdlii~D~~lp-~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|+|||||||++.+|..++.+|+. ||.|. .|.||++|++++++++||+||+|+.|| ++||+++++.||+.+ ++|+
T Consensus 9 ~~~ILIVDD~~~~~~~l~~~L~~~G~~v~~~a~~~~~al~~l~~~~~dlvi~D~~mp~~~dG~el~~~ir~~~---~~~v 85 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGC---NLPI 85 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHS---CCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCC---CCCE
T ss_conf 9989999799999999999999879989999789999999998379999999789877898999999999589---9978
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 873167878899999966996486579888999999999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~ 127 (140)
|++|++++.+...+++++||+|||.|||++++|..+|+.++++++..+
T Consensus 86 I~lt~~~~~~~~~~a~~~Ga~~yL~KP~~~~~L~~~i~~~l~r~~lee 133 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLEE 133 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHCC
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999667999999999987998899798999999999999999999865
No 57
>3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.95 E-value=2e-27 Score=189.97 Aligned_cols=122 Identities=17% Similarity=0.307 Sum_probs=111.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH-CCC---EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 998636677388899999999987-299---8999859799999998489989998613688770689999984336899
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLD-SEY---LVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKN 76 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~-~~~---~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~ 76 (140)
|+ .|||||||++.+|..++..|+ .+| .|.+|.||.+|++.+.+++||+||+|+.||++||+++++.||+. .++
T Consensus 1 M~-irILiVDD~~~~r~~l~~~L~~~~~~~~~v~~A~~g~eal~~~~~~~~dlil~D~~mP~~dG~el~~~ir~~--~p~ 77 (141)
T 3cu5_A 1 MS-LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKL--YPD 77 (141)
T ss_dssp -C-CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHH--CTT
T ss_pred CC-CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH--CCC
T ss_conf 99-629999499999999999999669983599887999999999985799999980899998999999999976--889
Q ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7178731678788999999669964865798889999999999999999
Q T0634 77 VPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
Q Consensus 77 iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~ 125 (140)
+|||++|++++.+...+|++.||+|||.|||++++|..+|+..++....
T Consensus 78 ~piI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 126 (141)
T 3cu5_A 78 CSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVLQ 126 (141)
T ss_dssp CEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 8199951579999999999869988997999999999999999999999
No 58
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.95 E-value=7e-27 Score=186.56 Aligned_cols=115 Identities=22% Similarity=0.400 Sum_probs=107.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6366773888999999999872-998999859799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
.|||||||++..+..++.+|+. ||.|..|.||++|++.+.+..||+|+ ||++||+++|+.+|+.. +.+|||++
T Consensus 19 mkILiVEDd~~~~~~l~~~L~~~G~~V~~a~~g~~Al~~l~~~~~Dlvl----lp~~dG~e~l~~lr~~~--~~~piI~l 92 (137)
T 2pln_A 19 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM----VSDKNALSFVSRIKEKH--SSIVVLVS 92 (137)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE----ECSTTHHHHHHHHHHHS--TTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEE----CCCCCCCHHHHHHHHHC--CCCCEEEE
T ss_conf 8899994999999999999998899999989999999999748999998----37975307999999844--67875999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCH-HHHHHHHHHHHHHHH
Q ss_conf 167878899999966996486579888-999999999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFNR-NDLLSRIEIHLRTQN 124 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~~-~eL~~~i~~~lr~~~ 124 (140)
|++++.+.+++++++||+|||+|||++ ++|++||++++|+..
T Consensus 93 T~~~~~~~~~~al~~GadDyl~KPf~~~~eL~aRi~a~lRR~~ 135 (137)
T 2pln_A 93 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWG 135 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC---
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 6489999999999869988997999998999999999964658
No 59
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.95 E-value=2.9e-27 Score=188.96 Aligned_cols=122 Identities=25% Similarity=0.383 Sum_probs=112.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHH-HCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9986366773888999999999872---998999859799999998-489989998613688770689999984336899
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS---EYLVIESKNEKEALEQID-HHHPDLVILDMDIIGENSPNLCLKLKRSKGLKN 76 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~---~~~v~~a~~~~eal~~~~-~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~ 76 (140)
|||.|||||||++.+|..++.+|+. ++.|.+|.|+.+|++.+. +.+||+||+|+.||++||++++++||+. .++
T Consensus 1 Ms~~rVLIVDD~~~vr~~l~~~L~~~~~~~~V~~a~~~~eal~~l~~~~~~DlvllDi~mP~~~G~~~~~~i~~~--~p~ 78 (154)
T 2qsj_A 1 MSLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRF--DPS 78 (154)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHH--CTT
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCC
T ss_conf 999999999299999999999997189982999968899999999716999589996899997479999999987--889
Q ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 717873167878899999966996486579888999999999999999
Q T0634 77 VPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 77 iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
+|||++|++.+.+...+++++||++||.||+++++|..+|+..++.+.
T Consensus 79 ~~iivlT~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~aI~~v~~G~~ 126 (154)
T 2qsj_A 79 NAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp SEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 959999812899999999986998899799999999999999987998
No 60
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.95 E-value=2.9e-27 Score=188.96 Aligned_cols=125 Identities=22% Similarity=0.362 Sum_probs=112.6
Q ss_pred CC--CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHH-CCCCEEEEECCCCC-CCCHHHHHHHHHCCCCC
Q ss_conf 99--86366773888999999999872-9989998597999999984-89989998613688-77068999998433689
Q T0634 1 MS--LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDH-HHPDLVILDMDIIG-ENSPNLCLKLKRSKGLK 75 (140)
Q Consensus 1 m~--m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~-~~pdlii~D~~lp~-~dG~~~~~~ir~~~~~~ 75 (140)
|| -+|||||||++.++..++.+|+. ||.|.+|.||++|++.+.+ ..||+||+|+.||+ +||+++|+.||+. +
T Consensus 1 mslk~~rVLiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~pdliilD~~mp~g~dG~e~~~~ir~~---~ 77 (140)
T 3h5i_A 1 MSLKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI---S 77 (140)
T ss_dssp -----CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH---C
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHC---C
T ss_conf 9989999999969999999999998508869999726378899875045654999713432113799999999856---9
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97178731678788999999669964865798889999999999999999999
Q T0634 76 NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSD 128 (140)
Q Consensus 76 ~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~ 128 (140)
.+|||++|++++.+...+++++||+|||+|||++++|.++|+.+++..+...+
T Consensus 78 ~~PiI~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~~~~ 130 (140)
T 3h5i_A 78 ELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEANVH 130 (140)
T ss_dssp CCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99899998999999999999779998998989999999999999999886998
No 61
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 1zy2_A*
Probab=99.95 E-value=5.5e-26 Score=181.02 Aligned_cols=124 Identities=20% Similarity=0.296 Sum_probs=115.0
Q ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 636677388899999999987-2998999859799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLD-SEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~-~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
.|||||||++.++..++.+|+ .||.|..|.|+.+|++.+++..||+||+|+.||++||+++++.+|+. .+++|||++
T Consensus 1 mrILIVDDd~~~r~~l~~~L~~~G~~V~~a~s~~eAl~~l~~~~~DlVllDl~lPd~dGlelL~~ir~~--~p~~pVIvi 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKER--SPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHH--CTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHC--CCCCCEEEE
T ss_conf 979999589999999999999779999998999999999861899899982999998999999999845--999818995
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 16787889999996699648657988899999999999999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSDL 129 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~~ 129 (140)
|++.+.+..++|++.||.||+.|||++++|...++..++......+.
T Consensus 79 T~~~~~~~av~A~~~GA~Dyl~KP~~~~~L~~~v~~al~~~~~~~~~ 125 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKEN 125 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15531465666553375530037710144677787767788888878
No 62
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H}
Probab=99.95 E-value=3.7e-28 Score=194.56 Aligned_cols=121 Identities=21% Similarity=0.280 Sum_probs=107.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 99863667738889999999998729989998597999999984899899986136887706899999843368997178
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDSEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI 80 (140)
|+|+|||||||++.++..++.+|+.+|..++|.++.+|+..+.+.+||+||+|+.||++||+++++.||+.. +.+|||
T Consensus 1 M~m~rILIVDD~~~~~~~l~~~L~~~g~~v~a~~~~eal~~l~~~~~dlvilD~~mP~~dG~el~~~ir~~~--~~~pii 78 (135)
T 3eqz_A 1 MSLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLAEHK--SPASLI 78 (135)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCTTEEEEEECCTTTTHHHHHHHHHHHTT--CCCEEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCC--CCCCEE
T ss_conf 977989999489999999999999789989993799999999826888068776379999999999999609--889689
Q ss_pred EEECCCCH-----HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 73167878-----89999996699648657988899999999999999
Q T0634 81 LLFSSEHK-----EAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 81 ~lta~~~~-----~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
++||+++. +...+++.+|++|||+|||++++|.++++++++++
T Consensus 79 ~ls~~~~~~~~~~~~~~~a~~~g~~~yl~KP~~~~~L~~~l~~~~~r~ 126 (135)
T 3eqz_A 79 LISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEECCCCCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 998357654501999999836999879989899999999999999997
No 63
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotation, magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.95 E-value=9.5e-27 Score=185.74 Aligned_cols=122 Identities=27% Similarity=0.492 Sum_probs=113.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 986366773888999999999872-998-9998597999999984-8998999861368877068999998433689971
Q T0634 2 SLKKILIIDQQDFSRIELKNFLDS-EYL-VIESKNEKEALEQIDH-HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 2 ~m~rILivDD~~~~r~~l~~~L~~-~~~-v~~a~~~~eal~~~~~-~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
.-.|||||||++.+|..++.+|+. ||. |.+|.+|.+|++.+.+ .+||+||+|+.||++||+++++.||+.+.++++|
T Consensus 4 ~~~rvLiVdD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~l~~~~~~dlvi~D~~mP~~~G~el~~~ir~~~~~~~ip 83 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCEEEEHHCCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 88899999188999999999999869979999899999999997079998996142189984699999998477789980
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 787316787889999996699648657988899999999999999
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
||++|++.+.+...++++.|+++||.|||++.+|..+|+.+|++.
T Consensus 84 iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 128 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTN 128 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 999989899999999998699899989899999999999997578
No 64
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=99.95 E-value=2.1e-26 Score=183.58 Aligned_cols=121 Identities=25% Similarity=0.389 Sum_probs=113.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|+ .|||||||++..+..++..|+. ||.|..|.|+++|++.+.++.||+||+|+.||+++|+++++.+|+.. +.+||
T Consensus 1 M~-~rILiVeDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~dliilD~~lp~~~g~~~~~~ir~~~--~~~pi 77 (225)
T 1kgs_A 1 MN-VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESG--VNTPV 77 (225)
T ss_dssp -C-CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCC--CCCCE
T ss_conf 99-6199992999999999999998799999989999999999728998999946776543101012211134--56753
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 873167878899999966996486579888999999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
|++|+..+.+...+|+++||+|||.|||++.+|.+++++.+++..
T Consensus 78 i~ls~~~~~~~~~~~l~~Gaddyl~KP~~~~eL~a~i~~~~~~~~ 122 (225)
T 1kgs_A 78 LMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 202334416789999977998524589999999999999971133
No 65
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D domain swapping; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.95 E-value=7.1e-27 Score=186.53 Aligned_cols=119 Identities=29% Similarity=0.523 Sum_probs=112.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 998636677388899999999987-2998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLD-SEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~-~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|+ ++||||||++..+..++..|+ .||.|..|.|+.+|++.+.++.||+||+|+.||+++|+++++.+|+.. ++||
T Consensus 3 M~-~~ILlVeDd~~~~~~l~~~L~~~g~~V~~~~~~~~al~~~~~~~~Dlvild~~~p~~~g~~~~~~~r~~~---~~pi 78 (230)
T 2oqr_A 3 MA-TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARS---SVPV 78 (230)
T ss_dssp -C-CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHC---SCSE
T ss_pred CC-CCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCC---CEEE
T ss_conf 99-8099998999999999999998799999989999999999727999999956787444421332102467---7139
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 87316787889999996699648657988899999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
|++|+.++.+.+.+|+++||+|||+|||++.+|+++|++++|+.
T Consensus 79 i~lt~~~~~~~~~~~l~~Gaddyi~KP~~~~eL~ari~~~lrr~ 122 (230)
T 2oqr_A 79 IMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp EEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 99957999899999997789999958999999999999998542
No 66
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.94 E-value=1.2e-26 Score=185.06 Aligned_cols=122 Identities=18% Similarity=0.297 Sum_probs=110.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-C-CE-EEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 9986366773888999999999872-9-98-9998597999999984899899986136887706899999843368997
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-E-YL-VIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNV 77 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~-~~-v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~i 77 (140)
|| .|||||||++.++..++.+|+. + +. +.+|.||++|++.+++++||+||+|+.||++||+++|++||+... ...
T Consensus 1 M~-~rILIVDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~eal~~~~~~~~DlvilD~~mP~~dG~e~~~~ir~~~~-~~~ 78 (130)
T 1dz3_A 1 MS-IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFE-HQP 78 (130)
T ss_dssp -C-EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCS-SCC
T ss_pred CC-CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCC-CCC
T ss_conf 99-6399996999999999999985899279999899999999998269999999557899989999999984699-999
Q ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 17873167878899999966996486579888999999999999999
Q T0634 78 PLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 78 PiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
|||++|++++.+...+++++||+|||.|||++++|..+|+.++++..
T Consensus 79 ~ii~lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 125 (130)
T 1dz3_A 79 NVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKTT 125 (130)
T ss_dssp EEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC-
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 59999764999999999987998999799999999999999981377
No 67
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.94 E-value=1e-26 Score=185.61 Aligned_cols=115 Identities=21% Similarity=0.372 Sum_probs=106.3
Q ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCC--CCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 366773888999999999872-99899-9859799999998489--9899986136887706899999843368997178
Q T0634 5 KILIIDQQDFSRIELKNFLDS-EYLVI-ESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~~-~~~v~-~a~~~~eal~~~~~~~--pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI 80 (140)
|||||||++.+|..++.+|+. ||.++ .|.||.+|++.++++. +|+|++|+.||++||+++++.||+.. +++|||
T Consensus 38 ~ILiVDD~~~~~~~l~~~L~~~g~~vv~~a~~g~eAl~~~~~~~p~~dliilD~~mP~~~G~e~l~~ir~~~--~~~piI 115 (157)
T 3hzh_A 38 NVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFD--KNARVI 115 (157)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHC--TTCCEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHC--CCCEEE
T ss_conf 899994999999999999998799899998999999999995699902998455799987599999999747--897089
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 73167878899999966996486579888999999999999
Q T0634 81 LLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
Q Consensus 81 ~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr 121 (140)
++|++++.+...+|++.||+|||.|||++++|+.+|+++|+
T Consensus 116 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~vl~ 156 (157)
T 3hzh_A 116 MISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 98347999999999985998899898999999999999957
No 68
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.94 E-value=3.4e-26 Score=182.28 Aligned_cols=119 Identities=18% Similarity=0.321 Sum_probs=108.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEECCHHHHHHHHHH-----CCCCEEEEECCCCCCCCHHHHHHHHHCCCC
Q ss_conf 986366773888999999999872-998-9998597999999984-----899899986136887706899999843368
Q T0634 2 SLKKILIIDQQDFSRIELKNFLDS-EYL-VIESKNEKEALEQIDH-----HHPDLVILDMDIIGENSPNLCLKLKRSKGL 74 (140)
Q Consensus 2 ~m~rILivDD~~~~r~~l~~~L~~-~~~-v~~a~~~~eal~~~~~-----~~pdlii~D~~lp~~dG~~~~~~ir~~~~~ 74 (140)
|--|||||||++.+|..++.+|+. ||. |..|.||.+|++.+++ .+||+||+|+.||++||+++++.||+...
T Consensus 1 t~irILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eAl~~~~~~~~~~~~~dlvl~D~~mP~~dG~~~~~~ir~~~~- 79 (133)
T 2r25_B 1 TSVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLG- 79 (133)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSC-
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCC-
T ss_conf 9978999969899999999999986995999989999999999986323789878997078899899999999985589-
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99717873167878899999966996486579888999999999999
Q T0634 75 KNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
Q Consensus 75 ~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr 121 (140)
..+|||++|++++.+...+|+++||++||.|||++++|...++.++.
T Consensus 80 ~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 80 YTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 99928999777999999999986998899798999999999999999
No 69
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis}
Probab=99.94 E-value=7.3e-27 Score=186.47 Aligned_cols=120 Identities=31% Similarity=0.558 Sum_probs=111.2
Q ss_pred CC-C-CEEEEECCCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 99-8-636677388899999999987-29989998597999999984899899986136887706899999843368997
Q T0634 1 MS-L-KKILIIDQQDFSRIELKNFLD-SEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNV 77 (140)
Q Consensus 1 m~-m-~rILivDD~~~~r~~l~~~L~-~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~i 77 (140)
|+ | +|||||||++..+..++..|+ .||.|..|.||++|++.+.+..||+||+|+.||+++|+++++.+++.. ..
T Consensus 1 m~~M~~kILiVeDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~DlvilDi~~p~~~g~~~~~~~~~~~---~~ 77 (238)
T 2gwr_A 1 MDTMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADS---GV 77 (238)
T ss_dssp -CCCCCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTC---CC
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCCC---CC
T ss_conf 987687499994999999999999997899999989999999999717999999857775235753022011245---43
Q ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 1787316787889999996699648657988899999999999999
Q T0634 78 PLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 78 PiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
|||++|+..+.+..++|+++||+|||+|||++.||.++|++.+++.
T Consensus 78 ~iI~lt~~~~~~~~~~al~~GAddyl~KP~~~~eL~ari~a~l~r~ 123 (238)
T 2gwr_A 78 PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp CEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 0589860686888998884788651158999999999999997204
No 70
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.94 E-value=6.2e-26 Score=180.69 Aligned_cols=122 Identities=15% Similarity=0.266 Sum_probs=107.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CC-E-EEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 86366773888999999999872-99-8-999859799999998489989998613688770689999984336899717
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EY-L-VIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~-~-v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
..|||||||++..|..++.+|+. ++ . |.+|.||.+|++.+++++||+||+|+.||++||+++++.||+.+ +..|+
T Consensus 9 k~kILIVDD~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~l~~~~~DlvilDi~mP~~dG~el~~~ir~~~--~~~~v 86 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFA--HKPFI 86 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTST--TCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCC--CCCEE
T ss_conf 7899999399999999999998689937999989999999999837999999889998999899999999609--99979
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8731678788999999669964865798889999999999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSD 128 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~ 128 (140)
|++|++.+ ...+|++.||+|||.|||++++|.++++.++++....++
T Consensus 87 i~~t~~~e--~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~~~~~ 133 (143)
T 2qv0_A 87 VFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQNN 133 (143)
T ss_dssp EEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC--
T ss_pred EEEECCHH--HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99978889--999999859999997999999999999999999997641
No 71
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.94 E-value=4.8e-26 Score=181.35 Aligned_cols=117 Identities=15% Similarity=0.246 Sum_probs=107.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-C--CEEEEECCHHHHHHHHHH------CCCCEEEEECCCCCCCCHHHHHHHHHCCC
Q ss_conf 86366773888999999999872-9--989998597999999984------89989998613688770689999984336
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-E--YLVIESKNEKEALEQIDH------HHPDLVILDMDIIGENSPNLCLKLKRSKG 73 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~--~~v~~a~~~~eal~~~~~------~~pdlii~D~~lp~~dG~~~~~~ir~~~~ 73 (140)
..|||||||++..+..++.+|+. + +.|..|.||.+|++.+.. ..||+||+|++||++||++++++||+.+.
T Consensus 7 ~~~ILvVDD~~~~~~~i~~~L~~~~~~~~v~~a~~g~eAl~~l~~~~~~~~~~pdlIllD~~mP~~dG~el~~~lr~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf 99899997999999999999997699818999899999999997300321579888997389999861899999985766
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 8997178731678788999999669964865798889999999999
Q T0634 74 LKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIH 119 (140)
Q Consensus 74 ~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~ 119 (140)
+.++|||++|+..+.+...+++++|+++||+|||+.++|+..+...
T Consensus 87 ~~~ipvI~lS~~~~~~~~~~a~~~G~~~~l~KP~~~~ell~~~~~~ 132 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWIL 132 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 7899499996879999999999879989997979999999999999
No 72
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.94 E-value=5.2e-26 Score=181.16 Aligned_cols=121 Identities=21% Similarity=0.406 Sum_probs=110.0
Q ss_pred CCC--CEEEEECCCHHHHHHHHHHHHC--CCEE-EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 998--6366773888999999999872--9989-9985979999999848998999861368877068999998433689
Q T0634 1 MSL--KKILIIDQQDFSRIELKNFLDS--EYLV-IESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLK 75 (140)
Q Consensus 1 m~m--~rILivDD~~~~r~~l~~~L~~--~~~v-~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~ 75 (140)
||| .|||||||++.+|..++.+|+. +|.+ .+|.||.+|++.+++.+||+||+|+.||++||+++++.||+.. +
T Consensus 1 ms~~~~rVLIVDD~~~~r~~l~~~L~~~~~~~vv~~a~~~~~al~~~~~~~pDlvllDl~mp~~~G~~~~~~ir~~~--~ 78 (153)
T 3cz5_A 1 MSLSTARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWD--G 78 (153)
T ss_dssp ---CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHC--T
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC--C
T ss_conf 99778779999099999999999998589928999989999999999855998999966679987899999999758--9
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 971787316787889999996699648657988899999999999999
Q T0634 76 NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 76 ~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
.+|||++|++++.+...+++++||++||.||+++++|..+|+.+++.+
T Consensus 79 ~~~iivlt~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~aI~~v~~g~ 126 (153)
T 3cz5_A 79 AARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp TCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred CCCEEEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 996899980389999999998699848978999999999999998389
No 73
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.94 E-value=9.7e-26 Score=179.47 Aligned_cols=121 Identities=18% Similarity=0.303 Sum_probs=111.1
Q ss_pred EEEEECCCHHHHHHHHHHHHC-CC-E-EEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 366773888999999999872-99-8-99985979999999848998999861368877068999998433689971787
Q T0634 5 KILIIDQQDFSRIELKNFLDS-EY-L-VIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~~-~~-~-v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
|||||||++..|..++.+|+. ++ . |.+|.||.+|++.+++..||+||+|+.||++||++++++||+.. +.+|||+
T Consensus 17 rILIvDD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~~~pDvvllD~~mp~~~G~e~~~~i~~~~--~~~~iiv 94 (152)
T 3eul_A 17 RVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYE--LPTRVLL 94 (152)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTT--CSCEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHC--CCCEEEE
T ss_conf 89999499999999999998598946999989999999999837999999808999975899999999749--9983999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 3167878899999966996486579888999999999999999999
Q T0634 82 LFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~ 127 (140)
+|++++.+...+++++||++||.||+++++|..+|+..++.+.+..
T Consensus 95 lT~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~aI~~v~~g~~~~~ 140 (152)
T 3eul_A 95 ISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVA 140 (152)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC----
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 9676999999999986998899798999999999999987999789
No 74
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.94 E-value=1.9e-26 Score=183.93 Aligned_cols=119 Identities=20% Similarity=0.317 Sum_probs=109.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHC---CCCCCCCE
Q ss_conf 6366773888999999999872-9989998597999999984899899986136887706899999843---36899717
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRS---KGLKNVPL 79 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~---~~~~~iPi 79 (140)
.|||||||++.+|..++.+|+. ||.|..|.||.+|++.++ ++||+||+|+.||++||+++++.||+. ...+.+||
T Consensus 8 ~rvLvVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eAl~~~~-~~~dlil~D~~mP~~dG~el~~~ir~~~~~~~~~~~~I 86 (136)
T 1dcf_A 8 LKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-HEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLL 86 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC-TTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 99999938899999999999987999999899999998605-79988999588999888999999998440025898879
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 87316787889999996699648657988899999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
|++||+.+.+.+.+++++|+++||.|||+..+|...++.+++.+
T Consensus 87 i~~Ta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~~r 130 (136)
T 1dcf_A 87 VALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp EEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCH
T ss_conf 99958999999999998699989989899999999999996020
No 75
>3f6c_A Positive transcription regulator EVGA; structural genomics, , PSI-2, protein structure initiative; 1.45A {Escherichia coli k-12}
Probab=99.93 E-value=1.1e-25 Score=179.02 Aligned_cols=120 Identities=21% Similarity=0.341 Sum_probs=110.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 6366773888999999999872-99899-985979999999848998999861368877068999998433689971787
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVI-ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~-~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
-|||||||++..|..++.+|+. +|.|+ +|.||.+|++.+++.+||+||+|+.||++||+++++.||+. .+.+|||+
T Consensus 2 i~iLIvDD~~~~~~~l~~~L~~~~~~vv~~a~~~~~al~~~~~~~pDlvilD~~mP~~~G~~~~~~lr~~--~~~~~iiv 79 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKR--QYSGIIII 79 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHT--TCCSEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCEEEE
T ss_conf 4899996989999999999987899899998999999999970699899995999999769999999974--99981999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 31678788999999669964865798889999999999999999
Q T0634 82 LFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~ 125 (140)
+|++++.+...+++++||++||+||+++++|..+|+++++...+
T Consensus 80 lS~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~ai~~v~~g~~~ 123 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 123 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCB
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf 96889999999999879989997989999999999999879925
No 76
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.93 E-value=1.7e-27 Score=190.41 Aligned_cols=121 Identities=22% Similarity=0.383 Sum_probs=114.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|+.++||||||++..|..++.+|+. ||.|.+|.||++|++.+.+++||+||+|+.||+++|+++++.+|+.. +++||
T Consensus 1 M~k~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlvilD~~lp~~~g~e~~~~~~~~~--~~~pv 78 (124)
T 1dc7_A 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRH--PMLPV 78 (124)
T ss_dssp CCCCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHC--TTSCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHC--CCCCE
T ss_conf 9989899997999999999999997899999989999999998737998999637899987579999999858--99979
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 87316787889999996699648657988899999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
|++|++++.+...+|++.|++|||+|||++++|..+|+.++++.
T Consensus 79 i~lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 122 (124)
T 1dc7_A 79 IIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 99976389999999998799889989799999999999999985
No 77
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C}
Probab=99.93 E-value=1.9e-25 Score=177.65 Aligned_cols=122 Identities=17% Similarity=0.229 Sum_probs=111.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 86366773888999999999872-99899985979999999848998999861368877068999998433689971787
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
.|+||||||++.+|..++.+|+. ||.|.+|.||.+|++.+.+.+||++|+|+.||+++|.+++...+.....+.+|||+
T Consensus 6 ~p~ILiVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~d~ii~d~~~~~~~~~~l~~~~~~~~~~~~~pvi~ 85 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIV 85 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 97799997999999999999998799999989999999999847998899982687589971667777774146687899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 3167878899999966996486579888999999999999999
Q T0634 82 LFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
+|++++.+.+.+|+++||+|||+|||++++|..+|+.++++++
T Consensus 86 ls~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~r 128 (136)
T 3kto_A 86 MASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 9648999999999976995899898999999999999999856
No 78
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.93 E-value=2.1e-25 Score=177.41 Aligned_cols=114 Identities=20% Similarity=0.292 Sum_probs=106.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6366773888999999999872-998999859799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
.|||||||++.++..++.+|+. ||.|.+|.||.+|++.+++.+||+||+|+.||+++|+++|+.||+.+.++.+|||++
T Consensus 2 ~rILiVdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlil~D~~mp~~~G~~l~~~ir~~~~~~~~pii~~ 81 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLF 81 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 88999979999999999999988999999899999999998379999999648999999999999980788999809999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 16787889999996699648657988899999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHL 120 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~l 120 (140)
|+..+.. +++++|+++||+|||++++|.+++++.+
T Consensus 82 s~~~~~~---~~~~~G~~~~l~KP~~~~~L~~~i~~~l 116 (119)
T 2j48_A 82 LGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp ESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred ECCHHHH---HHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 7878999---9998799899989899999999999984
No 79
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 2.59A {Cytophaga hutchinsonii atcc 33406}
Probab=99.92 E-value=3.7e-24 Score=169.63 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=105.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CC--EEEEECCHHHHHHHHHH-----CCCCEEEEECCCCCCCCHHHHHHHHHC--C
Q ss_conf 86366773888999999999872-99--89998597999999984-----899899986136887706899999843--3
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EY--LVIESKNEKEALEQIDH-----HHPDLVILDMDIIGENSPNLCLKLKRS--K 72 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~--~v~~a~~~~eal~~~~~-----~~pdlii~D~~lp~~dG~~~~~~ir~~--~ 72 (140)
+++||||||++.++..++.+|+. ++ .|.+|.||++|++.+++ .+||+||+|+.||++||++++++||+. +
T Consensus 9 ~~~ILiVDD~~~~~~~~~~~l~~~~~~~~v~~a~~g~eAl~~l~~~~~~~~~pdlIilD~~MP~mdG~el~~~ir~~~~~ 88 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQP 88 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCC
T ss_conf 99799997989999999999997799818999899999999998631027899889984888999779999999852851
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHH-CCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 689971787316787889999996-69964865798889999999999999
Q T0634 73 GLKNVPLILLFSSEHKEAIVNGLH-SGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
Q Consensus 73 ~~~~iPiI~lta~~~~~~~~~a~~-~Ga~dyl~KP~~~~eL~~~i~~~lr~ 122 (140)
....+|||++|+..+.....++.. .|+++||.|||++++|..+++.++.+
T Consensus 89 ~~~~~~viilss~~~~~~~~~~~~~~g~~~~l~KPi~~~~L~~~i~~~l~~ 139 (146)
T 3ilh_A 89 MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 248970899979899899999999779988998989999999999999961
No 80
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=99.92 E-value=1.9e-24 Score=171.41 Aligned_cols=117 Identities=26% Similarity=0.393 Sum_probs=108.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 86366773888999999999872998999859799999998489989998613688770689999984336899717873
Q T0634 3 LKKILIIDQQDFSRIELKNFLDSEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
|.|||||||++..+..++..|+..|.|.++.++.+|+. ..+.||+||+|+.||+++|++++..++... +.+|||++
T Consensus 2 M~kILiVdDd~~~~~~l~~~L~~~g~v~~~~~~~eal~--~~~~~DlvilD~~lp~~~g~~~~~~~~~~~--~~~~ii~~ 77 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLGRVKTFLTGEDFLN--DEEAFHVVVLDVMLPDYSGYEICRMIKETR--PETWVILL 77 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTEEEEEESSHHHHHH--CCSCCSEEEEESBCSSSBHHHHHHHHHHHC--TTSEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCEEEEECCHHHHHH--HCCCCCEEEEECCCCCCCCHHHHHHHHHCC--CCCCEEEE
T ss_conf 98799995999999999999986998999879999995--279999999958998887636776545304--55745730
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 16787889999996699648657988899999999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
|+..+.+....++++||+|||.|||+..+|.++|++++++.
T Consensus 78 s~~~~~~~~~~~~~~gaddyl~KP~~~~eL~~~i~~~l~r~ 118 (220)
T 1p2f_A 78 TLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 22222101575321465321524754034999999998305
No 81
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.92 E-value=4.9e-25 Score=175.06 Aligned_cols=114 Identities=18% Similarity=0.284 Sum_probs=103.0
Q ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHC---CCCCCCCEE
Q ss_conf 366773888999999999872-9989998597999999984899899986136887706899999843---368997178
Q T0634 5 KILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRS---KGLKNVPLI 80 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~---~~~~~iPiI 80 (140)
|||||||++.+|..++.+|+. ||.|..|.||.+|++.+++.+||+||+|+.||++||+++++.||+. ...+.+|||
T Consensus 12 ~VLiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~eAl~~l~~~~~dliilD~~mP~~dG~el~~~ir~~~~~~~~~~ipii 91 (140)
T 3c97_A 12 SVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASII 91 (140)
T ss_dssp EEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 89999598999999999999879999998999999999870799889995899998999999999844310378998399
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 73167878899999966996486579888999999999999
Q T0634 81 LLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
Q Consensus 81 ~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr 121 (140)
++|+....+.+ .++|++|||.|||++++|...|++...
T Consensus 92 ~~t~~~~~~~~---~~ag~~~~l~KP~~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 92 AITADTIDDDR---PGAELDEYVSKPLNPNQLRDVVLTCHS 129 (140)
T ss_dssp EEESSCCSCCC---CCSSCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEECCCCHHHH---HHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 99899619999---867998899898999999999999975
No 82
>2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} SCOP: c.23.1.1
Probab=99.92 E-value=3.3e-25 Score=176.14 Aligned_cols=115 Identities=17% Similarity=0.270 Sum_probs=101.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9986366773888999999999872-9989998597999999984-8998999861368877068999998433689971
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDH-HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~-~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
|...|||||||++..+..++.+|+. ||.|.++.||.+|++.+.+ .+||+||+|+.||++||+++|+.||+. .+.+|
T Consensus 13 m~~~rILvVDDd~~~~~~l~~~L~~~G~~v~~~~~g~~al~~l~~~~~~dlvilD~~mP~~dG~el~~~ir~~--~~~~p 90 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQ--TKQPS 90 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTS--SSCCE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHC--CCCCC
T ss_conf 6788799996999999999999998699897449999999999646999799983777788579999999970--99897
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 787316787889999996699648657988899999999999
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHL 120 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~l 120 (140)
||++|++++. ..++...|+ |||.|||++++|.++|+.+.
T Consensus 91 iI~lta~~~~--~~~~~~~~~-dyl~KP~~~~~L~~~v~~~~ 129 (138)
T 2b4a_A 91 VLILTTGRHE--LIESSEHNL-SYLQKPFAISELRAAIDYHK 129 (138)
T ss_dssp EEEEESCC----CCCCSSSCE-EEEESSCCHHHHHHHHHHTC
T ss_pred EEEEECCCCH--HHHHHCCCC-CEEECCCCHHHHHHHHHHHC
T ss_conf 8999888539--999852699-88989899999999999866
No 83
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.92 E-value=9.5e-25 Score=173.27 Aligned_cols=106 Identities=18% Similarity=0.337 Sum_probs=93.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHC--CCE-EEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 6366773888999999999872--998-99985979999999848-9989998613688770689999984336899717
Q T0634 4 KKILIIDQQDFSRIELKNFLDS--EYL-VIESKNEKEALEQIDHH-HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~--~~~-v~~a~~~~eal~~~~~~-~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
.|||||||++.+|..++.+|+. +|. |.+|.||.+|++.+.++ .||+||+|+.||++||+++++.||+.+.. .+||
T Consensus 14 ~~ILiVDD~~~~r~~l~~~L~~~~~~~~v~~a~~g~eal~~l~~~~~~dlillD~~MP~mdG~el~~~ir~~~~~-~i~v 92 (145)
T 3kyj_B 14 YNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKTRA-KICM 92 (145)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHCCC-EEC-
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCC-CEEE
T ss_conf 789999798999999999998589946999989999999999837999899982899999999999999856996-9199
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 8731678788999999669964865798889
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRN 110 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~ 110 (140)
|++|++++.+...+|+++||+|||+|||+..
T Consensus 93 i~~t~~~~~~~~~~a~~~Ga~dyl~KP~~~~ 123 (145)
T 3kyj_B 93 LSSVAVSGSPHAARARELGADGVVAKPSGTV 123 (145)
T ss_dssp CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC
T ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCCH
T ss_conf 9997079999999999869989998999857
No 84
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419}
Probab=99.91 E-value=8.1e-24 Score=167.49 Aligned_cols=119 Identities=18% Similarity=0.288 Sum_probs=106.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCC-CCCHHHHHHHHHCCCCCCCC
Q ss_conf 986366773888999999999872-99899985979999999848-9989998613688-77068999998433689971
Q T0634 2 SLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHH-HPDLVILDMDIIG-ENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 2 ~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~-~pdlii~D~~lp~-~dG~~~~~~ir~~~~~~~iP 78 (140)
+..+||||||++.+|..++.+|+. ||.|.+|.||++|++.+++. +||+||+|+.||+ +||+++++.+|+. .+++|
T Consensus 4 ~~~~ILiVDDd~~~~~~l~~~L~~~G~~v~~a~~~~eAl~~l~~~~~~dlvi~D~~~p~~~~G~el~~~ir~~--~~~~p 81 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREI--DPNMP 81 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHH--CTTCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHH--CCCCC
T ss_conf 9998999969999999999999987999999899999999998389987999711268999989999999986--88997
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 7873167878899999966996486579888999999999999999
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
+|++|++.+.+...++++.| +||.|||++++|..+|+..|++++
T Consensus 82 vi~~t~~~~~~~~~~~~~~~--~~L~KP~~~~~L~~~i~~~L~~r~ 125 (132)
T 2rdm_A 82 IVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCHHHHHHHCCCC--CEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99998989989999737089--089899999999999999999878
No 85
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.91 E-value=2.3e-23 Score=164.64 Aligned_cols=106 Identities=25% Similarity=0.384 Sum_probs=91.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CC--EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 9986366773888999999999872-99--89998597999999984899899986136887706899999843368997
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EY--LVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNV 77 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~--~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~i 77 (140)
|+..|||||||++.+|..++.+|+. ++ .|.+|.||.+|++.++++.||+|++|+.||++||+++++.|++.. ..
T Consensus 1 M~kirVLvVDD~~~~r~~l~~~L~~~~~~~vV~~A~~g~eAl~~l~~~~pDlvllDi~MP~mdGle~l~~i~~~~---~~ 77 (349)
T 1a2o_A 1 MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRLR---PM 77 (349)
T ss_dssp CCCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEECCCSSSCHHHHHHHHHHSS---CC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC---CC
T ss_conf 998889999798999999999998588969999969999999999727999999979889999899999998758---98
Q ss_pred CEEEEECCCC--HHHHHHHHHCCCCEEEECCCCH
Q ss_conf 1787316787--8899999966996486579888
Q T0634 78 PLILLFSSEH--KEAIVNGLHSGADDYLTKPFNR 109 (140)
Q Consensus 78 PiI~lta~~~--~~~~~~a~~~Ga~dyl~KP~~~ 109 (140)
|++++++... .+...+++++||+||+.||++.
T Consensus 78 ~~i~i~~~~~~~~~~~~~al~~Ga~dyi~KP~~~ 111 (349)
T 1a2o_A 78 PVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLG 111 (349)
T ss_dssp CEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred CCEEEEEEEECCHHHHHHHHHCCCCEEEECCCHH
T ss_conf 7148999850532777699866985899788303
No 86
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.91 E-value=6.9e-23 Score=161.68 Aligned_cols=117 Identities=28% Similarity=0.459 Sum_probs=107.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-C-C-EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 6366773888999999999872-9-9-89998597999999984899899986136887706899999843368997178
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-E-Y-LVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~-~-~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI 80 (140)
-|||||||++..|..++.+|+. + + .|.+|.||.+|++.+.++.||+||+|+.||+++|+++++.+++.. +.+||+
T Consensus 6 ~rIlivDD~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~pdlvllDi~~p~~~G~~~~~~~~~~~--~~~~ii 83 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKS--LSGRIV 83 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSC--CCSEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCC--CCCCEE
T ss_conf 789999198999999999998589928999979999999999736996899968889988740233332145--654215
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 731678788999999669964865798889999999999999
Q T0634 81 LLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
Q Consensus 81 ~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~ 122 (140)
++|++++.+...+|+++||+|||.||++.++|..+++..++.
T Consensus 84 vlt~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~~i~~~~~~ 125 (215)
T 1a04_A 84 VFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp EEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred EECCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf 522679999999999849989998168889999999999838
No 87
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.90 E-value=3.9e-23 Score=163.25 Aligned_cols=117 Identities=14% Similarity=0.095 Sum_probs=104.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6366773888999999999872-998999859799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
-|||||||++.+|..+...|+. ||.|..+.++.+|+ ...||+|++|+.||+++|+++.+.++.. +.+|||++
T Consensus 13 lrvLvvdd~~~~~~~l~~~L~~~G~~v~~~~~~~~al----~~~~Dlvl~D~~mp~~~g~~~~~~~~~~---~~~pvI~l 85 (196)
T 1qo0_D 13 LQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----DVPVDVVFTSIFQNRHHDEIAALLAAGT---PRTTLVAL 85 (196)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----SSCCSEEEEECCSSTHHHHHHHHHHHSC---TTCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHC----CCCCCEEEECCCCCCCCHHHHHHHHHCC---CCCCEEEE
T ss_conf 8699996789899999999998799776269989980----5689989852899997199999998659---99988998
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 167878899999966996486579888999999999999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~ 127 (140)
|++++.+...+|+++||+|||+|||++.+|..+++..++......
T Consensus 86 Ta~~~~~~~~~al~~Ga~~yl~KP~~~~~L~~~l~~~~~~~~~~~ 130 (196)
T 1qo0_D 86 VEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISEEMA 130 (196)
T ss_dssp ECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 667886999999985998886389998999999999999999988
No 88
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99}
Probab=99.90 E-value=9.7e-23 Score=160.76 Aligned_cols=113 Identities=22% Similarity=0.407 Sum_probs=103.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6366773888999999999872-998999859799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
.|||||||++..+..++..|+. ||.|..|.++++|++.+..+.||+|+ ||++||+++|+.||+.. +.+|||++
T Consensus 1 MkILiVeDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~Dlil----lp~~~G~~l~~~ir~~~--~~~pIi~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM----VSDKNALSFVSRIKEKH--SSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE----ECCTTHHHHHHHHHHHC--TTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEE----ECCCCHHHHHHHHHHCC--CCCEEEEE
T ss_conf 9899993899999999999998799999989999999998458999999----68988899999999639--99639981
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCC-HHHHHHHHHHHHHH
Q ss_conf 16787889999996699648657988-89999999999999
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPFN-RNDLLSRIEIHLRT 122 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~~-~~eL~~~i~~~lr~ 122 (140)
|+..+.+..++++++||+|||.|||+ .++|.+++++.+|+
T Consensus 75 t~~~~~~~~~~~l~~Gaddyl~KP~~~~~~l~a~~~~~~r~ 115 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 24320788887874188606872232035579999999610
No 89
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima}
Probab=99.83 E-value=4.4e-21 Score=150.44 Aligned_cols=84 Identities=18% Similarity=0.319 Sum_probs=77.7
Q ss_pred EEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 99985979999999848998999861368877068999998433689971787316787889999996699648657988
Q T0634 29 VIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFN 108 (140)
Q Consensus 29 v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~ 108 (140)
|.+|.||.+|++.+++..||+||+|+.||++||+++++.||+. .+.+|||++|++++.+...+|+++||+||+.|||+
T Consensus 8 V~~A~~g~eal~~~~~~~~dlvi~Di~mP~~~G~e~~~~i~~~--~~~~~ii~~T~~~~~~~~~~a~~~Ga~~yi~KP~~ 85 (237)
T 3cwo_X 8 VDDATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKI--DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAA 85 (237)
T ss_dssp EECCCSSSTTHHHHHHHCCSCEEEECCSTTSSHHHHHHHHHHH--SSSCCEEEECCSSTHHHHHHHHHTTCCEEEESHHH
T ss_pred EEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCEEEEEEECCHHHHHHHHCCCCCEEEECCCC
T ss_conf 9984999999999984599999995988999999999999862--89981999993050544357765898467879897
Q ss_pred HHHHHH
Q ss_conf 899999
Q T0634 109 RNDLLS 114 (140)
Q Consensus 109 ~~eL~~ 114 (140)
.+++..
T Consensus 86 ~~~l~~ 91 (237)
T 3cwo_X 86 VENPSL 91 (237)
T ss_dssp HHCTHH
T ss_pred CCCHHH
T ss_conf 155699
No 90
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.78 E-value=1e-18 Score=135.65 Aligned_cols=120 Identities=22% Similarity=0.410 Sum_probs=109.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEE-EECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 863667738889999999998729--9899-9859799999998489989998613688770689999984336899717
Q T0634 3 LKKILIIDQQDFSRIELKNFLDSE--YLVI-ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~~--~~v~-~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|.|||||||++..|..++.+|+.. +.++ .+.++.+|++.+....||++++|+.||+.+|.++++.++.. .+++||
T Consensus 1 MirIlivdd~~~~r~~L~~~L~~~~~~~vv~~a~~~~ea~~~~~~~~pdlvl~d~~l~~~~g~~~~~~l~~~--~~~~~v 78 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSR--MPDLRC 78 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEECSEETTEEHHHHHHHHHHH--CTTCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCC--CCCCCE
T ss_conf 988999969899999999999858993799997999999999986499899981778998874043300133--899708
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 873167878899999966996486579888999999999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~ 124 (140)
|++|+..+.....+++++|+++|+.||++..++...+...++...
T Consensus 79 i~~t~~~~~~~~~~~~~~G~~~~i~k~~~~~~~~~~i~~v~~~~~ 123 (225)
T 3c3w_A 79 LILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp EEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 987466447899999982988775467669999999999986897
No 91
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida}
Probab=99.76 E-value=3.1e-18 Score=132.70 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=97.0
Q ss_pred CC-CCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 99-8636677388899999999987-299899985979999999848998999861368877068999998433689971
Q T0634 1 MS-LKKILIIDQQDFSRIELKNFLD-SEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 1 m~-m~rILivDD~~~~r~~l~~~L~-~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
|| -+|||||||++..|..+...|. .+|.++.+.++.+++..+...+||+|++|+.||+++|+++++.+++ ..+|
T Consensus 1 ~~~~krILvVdD~~~~r~~l~~~L~~~~~~~v~~~~~~ea~~~~~~~~~dlillD~~lP~~~g~e~~~~l~~----~~~p 76 (259)
T 3luf_A 1 MSLKQKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDTLEGARHCQGDEYVVALVDLTLPDAPSGEAVKVLLE----RGLP 76 (259)
T ss_dssp ---CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEESSTGGGTTCCTTTEEEEEEESCBTTBTTSHHHHHHHH----TTCC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHH----CCCC
T ss_conf 998987999979999999999999975997999948799999964799988999688875521047888732----3587
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf 7873167878899999966996486579888999999
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSR 115 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~ 115 (140)
+|++|+....+.+..++++|+.+|+.||.....+...
T Consensus 77 vi~~t~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 113 (259)
T 3luf_A 77 VVILTADISEDKREAWLEAGVLDYVMKDSRHSLQYAV 113 (259)
T ss_dssp EEEEECC-CHHHHHHHHHTTCCEEEECSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 4621576567889999972875334433100223367
No 92
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.53 E-value=9e-15 Score=111.10 Aligned_cols=119 Identities=8% Similarity=0.027 Sum_probs=99.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CC-E--EEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 86366773888999999999872-99-8--99985979999999848998999861368877068999998433689971
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EY-L--VIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~-~--v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
..||+||||++..+..++.+|+. .. . +..+.++..+...+....||+|++|+.+|+++|...+..+++. ..+.++
T Consensus 7 ~i~VllvdD~~l~~~~L~~~Le~~~~~~~~i~~~~~~~~~~~~~~~~~~d~vllD~~~~~~~~~~~~~~~~~~-~~p~~~ 85 (225)
T 3klo_A 7 KLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHI-SCPDAK 85 (225)
T ss_dssp SEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHH-HCTTCE
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH-HCCCCE
T ss_conf 8879998187999999999980889975999955879999963551588889974568999659999999971-098987
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 78731678788999999669964865798889999999999999
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~ 122 (140)
|+++|+..+......++..|+.+|+.|+.++++|...|+.+.+.
T Consensus 86 vvi~t~~~~~~~~~~~~~~g~~g~l~K~~~~~~L~~ai~~v~~G 129 (225)
T 3klo_A 86 EVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp EEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred EEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 99997888899999999869839997799999999999999859
No 93
>1w25_A Stalked-cell differentiation controlling protein; two-component system, response regulator, diguanylate cyclase, ggdef domain; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A*
Probab=99.17 E-value=5.5e-09 Score=75.02 Aligned_cols=123 Identities=17% Similarity=0.350 Sum_probs=103.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 63667738889999999998729989998597999999984899899986136887706899999843368997178731
Q T0634 4 KKILIIDQQDFSRIELKNFLDSEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lt 83 (140)
.+++.+|++...+..+...+...+... +.++..+.......++|++++|+.||.++|.++++.+++.+....+|++.++
T Consensus 153 ~~~~~~d~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~i~~~~~~dlvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (459)
T 1w25_A 153 GRVLIVDDNERQAQRVAAELGVEHRPV-IESDPEKAKISAGGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMV 231 (459)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSEEE-EECCHHHHHHHHHSSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHCCCCHHEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCC
T ss_conf 432111278999999998632344222-2350799998536873203215655302478998876402344322231035
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 67878899999966996486579888999999999999999999
Q T0634 84 SSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
Q Consensus 84 a~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~ 127 (140)
+.........+++.|+++|+.||+...++..++...+.......
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (459)
T 1w25_A 232 DPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTD 275 (459)
T ss_dssp CTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 86447899999982640310355323334222223333321024
No 94
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1}
Probab=98.63 E-value=2.8e-06 Score=58.13 Aligned_cols=124 Identities=10% Similarity=0.106 Sum_probs=100.3
Q ss_pred CCEEEEE----CCCHHHHHHHHHHHH-CCCEEEE---ECCHHHHHHHHHHCCCCEEEEECCCCCC--CCHHHHHHHHHCC
Q ss_conf 8636677----388899999999987-2998999---8597999999984899899986136887--7068999998433
Q T0634 3 LKKILII----DQQDFSRIELKNFLD-SEYLVIE---SKNEKEALEQIDHHHPDLVILDMDIIGE--NSPNLCLKLKRSK 72 (140)
Q Consensus 3 m~rILiv----DD~~~~r~~l~~~L~-~~~~v~~---a~~~~eal~~~~~~~pdlii~D~~lp~~--dG~~~~~~ir~~~ 72 (140)
.+|||+. |.+..=..++..+|+ .||.|+- ..+.++..+.+.++.||+|.+...++.. ...++++.+|+..
T Consensus 18 r~rvl~a~~~~D~H~~G~~~v~~~l~~~G~eVi~lG~~~~~e~~v~~~~~~~~d~V~lS~~~~~~~~~~~~~i~~Lr~~g 97 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELG 97 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 99899973798634888999999999789379989988899999999985499899996466555899999999999769
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68997178731678788999999669964865798889999999999999999999
Q T0634 73 GLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSD 128 (140)
Q Consensus 73 ~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~~ 128 (140)
..++||+ +-+.....+.....+.|++.|..++.+..+.+..++..++.++...+
T Consensus 98 -~~~v~Vi-vGG~~~~~~~~~~~~~Gvd~vf~~g~~~~e~v~~l~~~~~~~r~~~e 151 (161)
T 2yxb_A 98 -ADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEKRMREE 151 (161)
T ss_dssp -CTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCEEE-EECCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf -9998799-98998877799999779787619999999999999999999885313
No 95
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=97.60 E-value=0.0012 Score=41.68 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=79.1
Q ss_pred CEEEEECCCHH-----HHHHH---HHHHH-CCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCC----CHHHHHHHH
Q ss_conf 63667738889-----99999---99987-299899985979999999848-998999861368877----068999998
Q T0634 4 KKILIIDQQDF-----SRIEL---KNFLD-SEYLVIESKNEKEALEQIDHH-HPDLVILDMDIIGEN----SPNLCLKLK 69 (140)
Q Consensus 4 ~rILivDD~~~-----~r~~l---~~~L~-~~~~v~~a~~~~eal~~~~~~-~pdlii~D~~lp~~d----G~~~~~~ir 69 (140)
.||||||++-. ....+ ...++ .+|.|+.+++-++++..+..+ ..+++++||.+++.+ ..+++..||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLH 80 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 96999925455767400157999999997589489984878999999975878768999715778421135999999999
Q ss_pred HCCCCCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECCCCHHHHHH-HHHHHHHHH
Q ss_conf 4336899717873167878-89999996699648657988899999-999999999
Q T0634 70 RSKGLKNVPLILLFSSEHK-EAIVNGLHSGADDYLTKPFNRNDLLS-RIEIHLRTQ 123 (140)
Q Consensus 70 ~~~~~~~iPiI~lta~~~~-~~~~~a~~~Ga~dyl~KP~~~~eL~~-~i~~~lr~~ 123 (140)
.. .+.+||.+++..... +..-...-..++.|+-.--+..++.+ +|....++.
T Consensus 81 ~~--~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~~~~~y 134 (755)
T 2vyc_A 81 ER--QQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HH--STTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HH--CCCCCEEEEECCCCCHHHCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 73--8899989995465303207898996513377523687899999999999998
No 96
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=97.58 E-value=0.0039 Score=38.57 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=87.4
Q ss_pred CCCCEEEE--E--CCCHHHHHHHHHHHH-CCCEEE---EECCHHHHHHHHHHCCCCEEEEECCCCCC--CCHHHHHHHHH
Q ss_conf 99863667--7--388899999999987-299899---98597999999984899899986136887--70689999984
Q T0634 1 MSLKKILI--I--DQQDFSRIELKNFLD-SEYLVI---ESKNEKEALEQIDHHHPDLVILDMDIIGE--NSPNLCLKLKR 70 (140)
Q Consensus 1 m~m~rILi--v--DD~~~~r~~l~~~L~-~~~~v~---~a~~~~eal~~~~~~~pdlii~D~~lp~~--dG~~~~~~ir~ 70 (140)
|..+||++ + |-+..-..++..+|+ .||.|. .....++.++.+.++.||+|.+...++.. ..-++++.+|+
T Consensus 1 ~~k~kVvi~~~~~D~H~lG~~mva~~l~~~G~~V~~LG~~~p~e~iv~~~~~~~~d~V~lS~~~~~~~~~~~~~i~~L~~ 80 (137)
T 1ccw_A 1 MEKKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDE 80 (137)
T ss_dssp CCCCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHH
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99987999945987558999999999998798699778767999999999863998897750242227989999999997
Q ss_pred CCCCCCCCEEEEE----CC-CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 3368997178731----67-878899999966996486579888999999999999
Q T0634 71 SKGLKNVPLILLF----SS-EHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
Q Consensus 71 ~~~~~~iPiI~lt----a~-~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr 121 (140)
. ..+++||++== .. ..++...+..+.|++......-++++.++.++..|+
T Consensus 81 ~-~~~~i~iivGG~~~~~~~~~~~~~~~~~~~G~~~vf~~gt~~~~~~~~~~~~l~ 135 (137)
T 1ccw_A 81 A-GLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDLN 135 (137)
T ss_dssp T-TCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHHT
T ss_pred C-CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf 5-999997999678788755608799999975988897988999999999999867
No 97
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=95.59 E-value=0.12 Score=29.27 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=76.4
Q ss_pred CEEEEE----CCCHHHHHHHHHHHH-CCCEEEE---ECCHHHHHHHHHHCCCCEEEEECCCCCC--CCHHHHHHHHHCCC
Q ss_conf 636677----388899999999987-2998999---8597999999984899899986136887--70689999984336
Q T0634 4 KKILII----DQQDFSRIELKNFLD-SEYLVIE---SKNEKEALEQIDHHHPDLVILDMDIIGE--NSPNLCLKLKRSKG 73 (140)
Q Consensus 4 ~rILiv----DD~~~~r~~l~~~L~-~~~~v~~---a~~~~eal~~~~~~~pdlii~D~~lp~~--dG~~~~~~ir~~~~ 73 (140)
|||+++ |-+..-|..+...+. .||.|+. ..+++++.+.+.+..+|+|.+-..-.+. -.-++++.||+..
T Consensus 597 Pkv~la~lG~~~h~~~ra~fA~~f~~~Gf~V~~~~~f~tpee~a~aa~es~a~vv~ics~d~~y~~~vp~l~~~Lk~ag- 675 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLG- 675 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTT-
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-
T ss_conf 6699981784243435999999998589617548888999999999997699999991787455889999999999679-
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 8997178731678788999999669964865798889999999
Q T0634 74 LKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRI 116 (140)
Q Consensus 74 ~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i 116 (140)
.+++||++ -+..=+++.....++|+++++..--+.-+-...+
T Consensus 676 ~~~i~Vil-gG~iP~~d~~~L~~aGV~~if~pgtni~~~~~~~ 717 (727)
T 1req_A 676 RPDILITV-GGVIPEQDFDELRKDGAVEIYTPGTVIPESAISL 717 (727)
T ss_dssp CTTSEEEE-EESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHH
T ss_pred CCCCEEEE-ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
T ss_conf 98857998-0778878799999779886848998099999999
No 98
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=95.53 E-value=0.083 Score=30.29 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=69.3
Q ss_pred EEEEE----CCCHHHHHHHHHHHH-CCCEEEE--E-CCHHHHHHHHHHCCCCEEEEECCCCC--CCCHHHHHHHHHCCCC
Q ss_conf 36677----388899999999987-2998999--8-59799999998489989998613688--7706899999843368
Q T0634 5 KILII----DQQDFSRIELKNFLD-SEYLVIE--S-KNEKEALEQIDHHHPDLVILDMDIIG--ENSPNLCLKLKRSKGL 74 (140)
Q Consensus 5 rILiv----DD~~~~r~~l~~~L~-~~~~v~~--a-~~~~eal~~~~~~~pdlii~D~~lp~--~dG~~~~~~ir~~~~~ 74 (140)
||++. |.+..=..++..+|+ .||.|.- + ...++.++.+.+..||+|.+...++. .+.-++++.+|+....
T Consensus 90 ~vvl~~~~ge~H~lG~~~va~~l~~~G~~V~~LG~~~p~e~l~~~~~~~~~~~v~lS~~~~~~~~~~~~~i~~l~~~~~~ 169 (210)
T 1y80_A 90 KIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGLR 169 (210)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTCG
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 06897466469999999999999987997151677789899999998509998888731366606689999999970667
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9971787316787889999996699648657988
Q T0634 75 KNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFN 108 (140)
Q Consensus 75 ~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~ 108 (140)
+++||++==+--+++ -+-+.||+.|-.-+.+
T Consensus 170 ~~~~v~vGG~~~~~~---~~~~~Gad~~a~da~~ 200 (210)
T 1y80_A 170 DRVKVIVGGAPLSQD---FADEIGADGYAPDAAS 200 (210)
T ss_dssp GGCEEEEESTTCCHH---HHHHHTCSEECSSHHH
T ss_pred CCCEEEEECCCCCHH---HHHHHCCCEEECCHHH
T ss_conf 898699989439999---9998299779389999
No 99
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.33 E-value=0.15 Score=28.71 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=45.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 6366773888999999999872----99899985979999999848998999861368
Q T0634 4 KKILIIDQQDFSRIELKNFLDS----EYLVIESKNEKEALEQIDHHHPDLVILDMDII 57 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~----~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp 57 (140)
.|+.|+|.++.....+..++.. .+.+...++.+...+..+++.||+++++-.++
T Consensus 22 i~~~i~d~d~~y~~~l~~~l~~~~~~~~~~~~ft~~e~~~~~~~~~~~~illi~e~~~ 79 (373)
T 3fkq_A 22 IKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYRIDVLIAEEDFN 79 (373)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHTCSEEEEETTCC
T ss_pred EEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 9999998979999999999735348846999937899999998617999899848646
No 100
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (ggdef & EAL domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans atcc 25259} PDB: 3ii8_A*
Probab=94.86 E-value=0.085 Score=30.20 Aligned_cols=107 Identities=8% Similarity=0.014 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEECCC----CC-CCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 888999999999872998--9998597999999984899899986136----88-7706899999843368997178731
Q T0634 11 QQDFSRIELKNFLDSEYL--VIESKNEKEALEQIDHHHPDLVILDMDI----IG-ENSPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 11 D~~~~r~~l~~~L~~~~~--v~~a~~~~eal~~~~~~~pdlii~D~~l----p~-~dG~~~~~~ir~~~~~~~iPiI~lt 83 (140)
+.......+..+-+.|+. +....++...+..+...+||.|=+|..+ .. .....+++.+.+-...-++++| .+
T Consensus 161 ~~~~~~~~i~~L~~~G~~ialDd~g~~~~~~~~l~~l~~d~iKld~~~v~~~~~~~~~~~i~~~i~~~a~~~~i~vI-ae 239 (294)
T 2r6o_A 161 MTDEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEVV-AE 239 (294)
T ss_dssp CCHHHHHHHHHHHHHTCEEEEEEETSSCBCHHHHHHSCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCEEE-EC
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE-EE
T ss_conf 58999999999997599899955899730088874134034235689986232474779999999999987799899-98
Q ss_pred CCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHH
Q ss_conf 678788999999669964----86579888999999999
Q T0634 84 SSEHKEAIVNGLHSGADD----YLTKPFNRNDLLSRIEI 118 (140)
Q Consensus 84 a~~~~~~~~~a~~~Ga~d----yl~KP~~~~eL~~~i~~ 118 (140)
+-.+.+....+.+.|++. |+.||...++|...++.
T Consensus 240 GVEt~~~~~~l~~lGid~~QG~~~~~P~~~~~~~~~l~~ 278 (294)
T 2r6o_A 240 GIETAQQYAFLRDRGCEFGQGNLMSTPQAADAFASLLDR 278 (294)
T ss_dssp CCCSHHHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH
T ss_conf 458699999999869999888921367999999999985
No 101
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=94.55 E-value=0.24 Score=27.40 Aligned_cols=108 Identities=11% Similarity=0.085 Sum_probs=72.7
Q ss_pred CEEEEE----CCCHHHHHHHHHHHH-CCCEEEE---ECCHHHHHHHHHHCCCCEEEEECCCCC-CC-CHHHHHHHHHCCC
Q ss_conf 636677----388899999999987-2998999---859799999998489989998613688-77-0689999984336
Q T0634 4 KKILII----DQQDFSRIELKNFLD-SEYLVIE---SKNEKEALEQIDHHHPDLVILDMDIIG-EN-SPNLCLKLKRSKG 73 (140)
Q Consensus 4 ~rILiv----DD~~~~r~~l~~~L~-~~~~v~~---a~~~~eal~~~~~~~pdlii~D~~lp~-~d-G~~~~~~ir~~~~ 73 (140)
++|++. |-+..=..++..+|+ .||.|+- -...++.++.+.++.||+|-+...|.. +. --++++.+|+.
T Consensus 124 ~~vv~~~~~gd~H~lG~~~va~~l~~~G~~V~~LG~~~p~e~i~~~~~~~~~d~vglS~~~~~~l~~~~~~i~~l~~~-- 201 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLEN-- 201 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTT--
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHC--
T ss_conf 848983699975589999999999987995796899999999999999739998998357425399999999999974--
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 8997178731678788999999669964865798889999999
Q T0634 74 LKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRI 116 (140)
Q Consensus 74 ~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i 116 (140)
.+.+||++ =|..-.. .-+-+.|||.|-.-+++.-.+..++
T Consensus 202 ~~~~~i~v-GGa~~~~--~~~~~~GaD~~a~da~~av~~a~~l 241 (258)
T 2i2x_B 202 GIKIPFAC-GGGAVNQ--DFVSQFALGVYGEEAADAPKIADAI 241 (258)
T ss_dssp TCCCCEEE-ESTTCCH--HHHHTSTTEEECSSTTHHHHHHHHH
T ss_pred CCCCCEEE-ECCCCCH--HHHHHHCCCEECCCHHHHHHHHHHH
T ss_conf 99982897-7987999--9999829884767999999999999
No 102
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=94.48 E-value=0.11 Score=29.44 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=66.3
Q ss_pred CEEEE--E--CCCHHHHHHHHHHHH-CCCEEEE--E-CCHHHHHHHHHHCCCCEEEE--ECCCCC--CCCHHHHHHHHHC
Q ss_conf 63667--7--388899999999987-2998999--8-59799999998489989998--613688--7706899999843
Q T0634 4 KKILI--I--DQQDFSRIELKNFLD-SEYLVIE--S-KNEKEALEQIDHHHPDLVIL--DMDIIG--ENSPNLCLKLKRS 71 (140)
Q Consensus 4 ~rILi--v--DD~~~~r~~l~~~L~-~~~~v~~--a-~~~~eal~~~~~~~pdlii~--D~~lp~--~dG~~~~~~ir~~ 71 (140)
+||++ + |-+..=..++..+|+ .||.|.- + ...++.++.+.+..||+|.+ ...|+. ..--++++.+|+.
T Consensus 93 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~V~~lG~~~p~e~~~~~~~~~~~d~v~ls~S~~~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 73689856997778999999999997799799788899999999999981988047874245653369899999999981
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 3689971787316787889999996699648657988
Q T0634 72 KGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFN 108 (140)
Q Consensus 72 ~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~ 108 (140)
...+++||++==+--+++ -+-+.|||.|-.-+.+
T Consensus 173 ~~~~~v~i~vGGa~~~~~---~a~~~GAD~~a~da~~ 206 (215)
T 3ezx_A 173 KLRDSVKCMFGGAPVSDK---WIEEIGADATAENAAE 206 (215)
T ss_dssp TCGGGSEEEEESSSCCHH---HHHHHTCCBCCSSHHH
T ss_pred CCCCCCEEEEECCCCCHH---HHHHHCCCEEECCHHH
T ss_conf 888899499889028999---9998398878079999
No 103
>2bas_A YKUI protein; EAL domain, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.61A {Bacillus subtilis} SCOP: c.1.33.1 d.110.6.2 PDB: 2w27_A*
Probab=94.21 E-value=0.24 Score=27.41 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEECCCC-----CCCCHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 8999999999872998--99985979999999848998999861368-----8770689999984336899717873167
Q T0634 13 DFSRIELKNFLDSEYL--VIESKNEKEALEQIDHHHPDLVILDMDII-----GENSPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
Q Consensus 13 ~~~r~~l~~~L~~~~~--v~~a~~~~eal~~~~~~~pdlii~D~~lp-----~~dG~~~~~~ir~~~~~~~iPiI~lta~ 85 (140)
+.....+..+-+.|+. +.-..+|..-++.+...+||.|=+|..+- +.+.-.+++.|-+.....++. ++..+-
T Consensus 157 ~~l~~~i~~lr~~G~~iALDDFG~g~s~l~~l~~l~pD~VKlD~~li~~~~~~~~~~~il~~Lv~la~~~g~~-vIaEGV 235 (431)
T 2bas_A 157 EQLYHMLAYYRTYGIKIAVDNIGKESSNLDRIALLSPDLLKIDLQALKVSQPSPSYEHVLYSISLLARKIGAA-LLYEDI 235 (431)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETTTBCCHHHHHHHCCSEEEEECTTTC----CCHHHHHHHHHHHHHHHHTCE-EEEECC
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHCCCE-EEEEEC
T ss_conf 9999999987624854764477788750999986899999998899841403956899999999999985998-999808
Q ss_pred CCHHHHHHHHHCCCCE----EEECCC----CHHHHHHHHHHHH
Q ss_conf 8788999999669964----865798----8899999999999
Q T0634 86 EHKEAIVNGLHSGADD----YLTKPF----NRNDLLSRIEIHL 120 (140)
Q Consensus 86 ~~~~~~~~a~~~Ga~d----yl~KP~----~~~eL~~~i~~~l 120 (140)
.+.+....+.+.|++- |+.||- +.+.+..+++...
T Consensus 236 Et~~q~~~l~~~Gvd~~QG~~f~~P~~~~~~~~~~~~~l~~~~ 278 (431)
T 2bas_A 236 EANFQLQYAWRNGGRYFQGYYLVSPSETFLERDVLKQRLKTEF 278 (431)
T ss_dssp CSHHHHHHHHHTTEEEECSTTTCCCBSSCCCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCEECCCCEECCCCCHHHHHHHHHHHHHHH
T ss_conf 8499999999769994457722479960221446799999999
No 104
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=94.12 E-value=0.3 Score=26.83 Aligned_cols=117 Identities=9% Similarity=0.000 Sum_probs=78.0
Q ss_pred CEEEEE----CCCHHHHHHHHHHHH-CC---------CEEEE---ECCHHHHHHHHHHCCCCEEEEECCCCCCCC-H---
Q ss_conf 636677----388899999999987-29---------98999---859799999998489989998613688770-6---
Q T0634 4 KKILII----DQQDFSRIELKNFLD-SE---------YLVIE---SKNEKEALEQIDHHHPDLVILDMDIIGENS-P--- 62 (140)
Q Consensus 4 ~rILiv----DD~~~~r~~l~~~L~-~~---------~~v~~---a~~~~eal~~~~~~~pdlii~D~~lp~~dG-~--- 62 (140)
+||++. |-+..=...+..+++ .| |.|+- ...+++.++.+.++.||+|.+...|...++ +
T Consensus 121 ~~vv~a~~g~D~H~~G~~~i~~~~~~aG~~~~e~~~~feVi~LG~~vp~ee~v~~a~e~~aD~IgvS~l~t~~~~h~~~~ 200 (262)
T 1xrs_B 121 IVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNM 200 (262)
T ss_dssp EEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHH
T ss_conf 67999940885125779999999987586441136844999678899999999999861999999986303630268999
Q ss_pred -HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf -8999998433689971787316787889999996699648657988899999999999999
Q T0634 63 -NLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 63 -~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~ 123 (140)
++++.+++......+||++=-+..+. .-+.+.|++.+..---...+....+...++.+
T Consensus 201 ~~li~~L~~~Gl~~~v~vivGG~~~~~---~~a~~lGaDaifgpGt~~~dvA~~l~~~l~~r 259 (262)
T 1xrs_B 201 THLIELLEAEGLRDRFVLLCGGPRINN---EIAKELGYDAGFGPGRFADDVATFAVKTLNDR 259 (262)
T ss_dssp HHHHHHHHHTTCGGGSEEEEECTTCCH---HHHHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCH---HHHHHCCCCEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999996699889789998998999---99997799888599988999999999999987
No 105
>3bic_A Methylmalonyl-COA mutase, mitochondrial precursor; organic aciduria, methylmalonyl COA mutase deficiency, metabolic disease, structural genomics; 2.60A {Homo sapiens}
Probab=90.37 E-value=0.89 Score=23.85 Aligned_cols=116 Identities=13% Similarity=0.050 Sum_probs=74.6
Q ss_pred CEEEEEC----CCHHHHHHHHHHHH-CCCEEEE---ECCHHHHHHHHHHCCCCEEEEECCCCC--CCCHHHHHHHHHCCC
Q ss_conf 6366773----88899999999987-2998999---859799999998489989998613688--770689999984336
Q T0634 4 KKILIID----QQDFSRIELKNFLD-SEYLVIE---SKNEKEALEQIDHHHPDLVILDMDIIG--ENSPNLCLKLKRSKG 73 (140)
Q Consensus 4 ~rILivD----D~~~~r~~l~~~L~-~~~~v~~---a~~~~eal~~~~~~~pdlii~D~~lp~--~dG~~~~~~ir~~~~ 73 (140)
|||++.- -+..-|..+..-+. .||.|+. ..+++++.+...+...++|.+...-.+ .-.-++++.+|+.-
T Consensus 605 P~V~la~~G~d~h~~gr~~fA~~f~~~Gf~V~~~~~f~tpee~a~aA~e~~a~vvgissl~~~~~~~vp~l~~~Lk~~G- 683 (762)
T 3bic_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSLG- 683 (762)
T ss_dssp CEEEEEEBSSCCCCHHHHHHHHHHHHTTCEEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHHHT-
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-
T ss_conf 6599981684053468999999999389538638988999999999996598999995688146999999999999669-
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCH----HHHHHHHHHHHH
Q ss_conf 899717873167878899999966996486579888----999999999999
Q T0634 74 LKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNR----NDLLSRIEIHLR 121 (140)
Q Consensus 74 ~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~----~eL~~~i~~~lr 121 (140)
.+++||++ -+..-+++.....++|+++|+.---+. .+++..++..|.
T Consensus 684 ~~dI~Vvv-GG~~P~~d~~~l~~aGv~~~~~~g~~v~~~~~~~l~~~~~~~~ 734 (762)
T 3bic_A 684 RPDILVMC-GGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKCLE 734 (762)
T ss_dssp CTTSEEEE-EESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEE-CCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97767998-0788857699999779787848989289999999999999997
No 106
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic degradation; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=89.27 E-value=1.1 Score=23.31 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=71.6
Q ss_pred HHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHH
Q ss_conf 9999999872998999---8597999999984899899986136887706899999843368997178731678788999
Q T0634 16 RIELKNFLDSEYLVIE---SKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIV 92 (140)
Q Consensus 16 r~~l~~~L~~~~~v~~---a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~ 92 (140)
...++.-|.+|-.+.. ........+.+....+|.|++|..=...|--++...++.-.... ++.++=....+.....
T Consensus 27 ~N~~k~~L~~G~~~~G~~~~~~sp~~~Ei~a~~GfDfv~ID~EHg~~~~~~~~~~i~a~~~~~-~~~iVRvp~~~~~~i~ 105 (287)
T 2v5j_A 27 ENSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYP-SQPVVRPSWNDPVQIK 105 (287)
T ss_dssp CCHHHHHHHTTCCEEEEEECSCCHHHHHHHHTSCCSEEEEESSSSSCCHHHHHHHHHHHTTSS-SEEEEECSSSCHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC-CCEEEECCCCCHHHHH
T ss_conf 189999998799879987578996999999738979999806779999999999999874359-9606546889999999
Q ss_pred HHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 999669964865798889999999
Q T0634 93 NGLHSGADDYLTKPFNRNDLLSRI 116 (140)
Q Consensus 93 ~a~~~Ga~dyl~KP~~~~eL~~~i 116 (140)
+++++||...+.--++-.+=...+
T Consensus 106 r~LD~Ga~GIivP~V~t~eea~~~ 129 (287)
T 2v5j_A 106 QLLDVGTQTLLVPMVQNADEAREA 129 (287)
T ss_dssp HHHHTTCCEEEESCCCSHHHHHHH
T ss_pred HHHHCCCCEEEECCCCCHHHHHHH
T ss_conf 998379986794674999999999
No 107
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=89.00 E-value=1.1 Score=23.20 Aligned_cols=106 Identities=16% Similarity=0.098 Sum_probs=53.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHH--HHCCCEEEEE------CCHHHHHHHHHHCCCC-EEEEECCCCCC------------
Q ss_conf 9986366773888999999999--8729989998------5979999999848998-99986136887------------
Q T0634 1 MSLKKILIIDQQDFSRIELKNF--LDSEYLVIES------KNEKEALEQIDHHHPD-LVILDMDIIGE------------ 59 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~--L~~~~~v~~a------~~~~eal~~~~~~~pd-lii~D~~lp~~------------ 59 (140)
|+||.+.|.=|-....+.+... +...-.+... +.|.+.++.+++..|+ .+++|+.+.+.
T Consensus 1 m~~p~l~vAlD~~~~~~~l~~~~~~~~~id~~kig~~~~~~~G~~~i~~l~~~~~~~~i~~dlk~~di~~~~~~~~~~~g 80 (216)
T 1q6o_A 1 MSLPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEAN 80 (216)
T ss_dssp --CCEEEEEECCSSHHHHHHHHHHHGGGCSEEEECHHHHHHHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEECCEEEECCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHC
T ss_conf 98985799866899999999999638875399947221135696999999986899706764202677899999999849
Q ss_pred ---------CCHHHHHHHHH-CCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECC
Q ss_conf ---------70689999984-336899717873167878899999966996486579
Q T0634 60 ---------NSPNLCLKLKR-SKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKP 106 (140)
Q Consensus 60 ---------dG~~~~~~ir~-~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP 106 (140)
.|.+..+...+ .......+++.+++....+......+.|++..+.++
T Consensus 81 ad~itvh~~~g~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~ 137 (216)
T 1q6o_A 81 ADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHR 137 (216)
T ss_dssp CSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 999998502581689999999986202022202389998999998855867166541
No 108
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=88.80 E-value=1.2 Score=23.11 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHCCC-CEEEEECCCCCC-CC--HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 97999999984899-899986136887-70--6899999843368997178731678788999999669964865
Q T0634 34 NEKEALEQIDHHHP-DLVILDMDIIGE-NS--PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 34 ~~~eal~~~~~~~p-dlii~D~~lp~~-dG--~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
+..+.+..+.+..+ .++++|+.=-|+ .| +++.+.+++. ..+|+|.--+-.+.++..++.+.|++..+.
T Consensus 153 ~~~~~~~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~---~~~pii~sGGv~s~~dl~~l~~~g~~gviv 224 (252)
T 1ka9_F 153 HAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEA---VGVPVIASGGAGRMEHFLEAFQAGAEAALA 224 (252)
T ss_dssp EHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 799999999866998899985412266678327999999862---388599976899999999999789979998
No 109
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=88.07 E-value=1.3 Score=22.82 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEECCCCCCCC-----HHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 999999999872998999--859799999998489989998613688770-----6899999843368997178731678
Q T0634 14 FSRIELKNFLDSEYLVIE--SKNEKEALEQIDHHHPDLVILDMDIIGENS-----PNLCLKLKRSKGLKNVPLILLFSSE 86 (140)
Q Consensus 14 ~~r~~l~~~L~~~~~v~~--a~~~~eal~~~~~~~pdlii~D~~lp~~dG-----~~~~~~ir~~~~~~~iPiI~lta~~ 86 (140)
...+.-+.+...||.|.. ..|..-|..+.+-.-. +++=|-=|-++| ...++.|++. .++|+|+=.+-+
T Consensus 114 etl~Aa~~Lv~eGF~VlpY~~~D~v~ak~Led~Gc~--avMPlgsPIGSg~Gi~n~~~l~~i~e~---~~vPvIVDAGIG 188 (264)
T 1xm3_A 114 ETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVH--AIMPGASPIGSGQGILNPLNLSFIIEQ---AKVPVIVDAGIG 188 (264)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCS--CBEECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCC--EEEEEHHHHCCCCCCCCHHHHHHHHHC---CCEEEEEECCCC
T ss_conf 789999999868976999726899999999864883--211000031168885787899999854---886899706889
Q ss_pred CHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHH
Q ss_conf 788999999669964865-----79888999999999999
Q T0634 87 HKEAIVNGLHSGADDYLT-----KPFNRNDLLSRIEIHLR 121 (140)
Q Consensus 87 ~~~~~~~a~~~Ga~dyl~-----KP~~~~eL~~~i~~~lr 121 (140)
.+.+..++++.|+|..|. +--+|..+....+...+
T Consensus 189 ~pSdA~~AMElG~daVLvNTAIA~a~dPv~MA~A~~~AV~ 228 (264)
T 1xm3_A 189 SPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVE 228 (264)
T ss_dssp SHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEECHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9899999997008999943466618998999999999999
No 110
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp}
Probab=86.09 E-value=1.7 Score=22.13 Aligned_cols=88 Identities=13% Similarity=0.044 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEECC------CCCCCCHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 8999999999872998999-859799999998489989998613------688770689999984336899717873167
Q T0634 13 DFSRIELKNFLDSEYLVIE-SKNEKEALEQIDHHHPDLVILDMD------IIGENSPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
Q Consensus 13 ~~~r~~l~~~L~~~~~v~~-a~~~~eal~~~~~~~pdlii~D~~------lp~~dG~~~~~~ir~~~~~~~iPiI~lta~ 85 (140)
.......+.....+..+.. ..+..++.. +.+...|++.+... .+...-+++++..+. .++|+|.-.+-
T Consensus 116 ~~~~~~~~~~~~~g~~v~~~v~~~~~~~~-a~~~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~----~~vpvia~GGI 190 (232)
T 3igs_A 116 VAVEALLARIHHHHLLTMADCSSVDDGLA-CQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHD----AGCRVIAEGRY 190 (232)
T ss_dssp SCHHHHHHHHHHTTCEEEEECCSHHHHHH-HHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEECCCCHHHHHH-HHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHC----CCCEEEEECCC
T ss_conf 89999999999709855012588899999-99749974365324656666671357999998725----68819986898
Q ss_pred CCHHHHHHHHHCCCCEEEEC
Q ss_conf 87889999996699648657
Q T0634 86 EHKEAIVNGLHSGADDYLTK 105 (140)
Q Consensus 86 ~~~~~~~~a~~~Ga~dyl~K 105 (140)
.++++..+++++|||..+.=
T Consensus 191 ~t~~d~~~~~~~GAD~V~vG 210 (232)
T 3igs_A 191 NSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHCCCCEEEEC
T ss_conf 99999999998699999987
No 111
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=85.40 E-value=1.6 Score=22.24 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=42.4
Q ss_pred HHHHCCCCEEEEEC-----CCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE-----C-CCCH
Q ss_conf 99848998999861-----36887706899999843368997178731678788999999669964865-----7-9888
Q T0634 41 QIDHHHPDLVILDM-----DIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT-----K-PFNR 109 (140)
Q Consensus 41 ~~~~~~pdlii~D~-----~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~-----K-P~~~ 109 (140)
.+.+..+|+||+|- ...-.+--+++..|++.|..- =+++|+..-++..... .|+++ | ||+.
T Consensus 115 ~i~~~~~dlvILDEi~~Al~~gli~~~~v~~lL~~rp~~~---evVlTGR~~p~~L~e~-----ADlVTEm~~iKHp~~~ 186 (196)
T 1g5t_A 115 MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQ---TVIITGRGCHRDILDL-----ADTVSELRPVKHAFDA 186 (196)
T ss_dssp HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTC---EEEEECSSCCHHHHHH-----CSEEEECCCSCCC---
T ss_pred HHHCCCCCEEEEHHHHHHHHHCCCCHHHHHHHHHHCCCCC---EEEEECCCCCHHHHHH-----HHHHHHHHHCCCHHHC
T ss_conf 9758898889861579999848979999999998589997---7999799999999996-----2155300011481223
Q ss_pred HH
Q ss_conf 99
Q T0634 110 ND 111 (140)
Q Consensus 110 ~e 111 (140)
..
T Consensus 187 Gi 188 (196)
T 1g5t_A 187 GV 188 (196)
T ss_dssp --
T ss_pred CC
T ss_conf 99
No 112
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=84.78 E-value=1.9 Score=21.74 Aligned_cols=103 Identities=11% Similarity=0.171 Sum_probs=63.0
Q ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHC-----CCEEEEECCH-----HHH-------HHHHHHCCCCEEEEECCCCCCCCH
Q ss_conf 9986366773-888999999999872-----9989998597-----999-------999984899899986136887706
Q T0634 1 MSLKKILIID-QQDFSRIELKNFLDS-----EYLVIESKNE-----KEA-------LEQIDHHHPDLVILDMDIIGENSP 62 (140)
Q Consensus 1 m~m~rILivD-D~~~~r~~l~~~L~~-----~~~v~~a~~~-----~ea-------l~~~~~~~pdlii~D~~lp~~dG~ 62 (140)
|++-||-++- .+--.-..+.-+|.. +-.|..+.+| +++ +..++++.||.+|.=--=|..-|-
T Consensus 1 m~vvKigiiK~GNIg~s~~idllLDErAdRedi~vrv~gsGaKM~pe~~e~~v~~~~~~~~~~~pDf~i~isPN~a~PGP 80 (283)
T 1qv9_A 1 MTVAKAIFIKCGNLGTSMMMDMLLDERADREDVEFRVVGTSVKMDPECVEAAVEMALDIAEDFEPDFIVYGGPNPAAPGP 80 (283)
T ss_dssp -CCEEEEEEECSCCHHHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHHCCSEEEEECSCTTSHHH
T ss_pred CEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 90699989973452058999998765403468638995266677978899999976767874089989997899899995
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 899999843368997178731678788999999669964865798
Q T0634 63 NLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPF 107 (140)
Q Consensus 63 ~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~ 107 (140)
.-.+.+-+. ..+|.|++|...... ...+++....+||.=|.
T Consensus 81 ~~ARE~l~~---~giP~IvI~D~p~~K-~~d~~~~~GfGYIivk~ 121 (283)
T 1qv9_A 81 SKAREMLAD---SEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKP 121 (283)
T ss_dssp HHHHHHHHT---SSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETT
T ss_pred HHHHHHHHH---CCCCEEEECCCCCHH-HHHHHHHCCCCEEEEEC
T ss_conf 779999874---799879975885254-68999864884799716
No 113
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=84.24 E-value=2.1 Score=21.59 Aligned_cols=103 Identities=6% Similarity=0.013 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHCCCEEEEE--CCHHHHHHHHHHCCCCEEEEECCCCCCCCH-----HHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 9999999998729989998--597999999984899899986136887706-----899999843368997178731678
Q T0634 14 FSRIELKNFLDSEYLVIES--KNEKEALEQIDHHHPDLVILDMDIIGENSP-----NLCLKLKRSKGLKNVPLILLFSSE 86 (140)
Q Consensus 14 ~~r~~l~~~L~~~~~v~~a--~~~~eal~~~~~~~pdlii~D~~lp~~dG~-----~~~~~ir~~~~~~~iPiI~lta~~ 86 (140)
...+..+.+...||.|... .|..-|..+..-. --+++-|.=|-.+|. ..++.|+.. ..+|+|+=.+-+
T Consensus 123 etl~Aa~~Lv~~GF~VlpY~~~D~vlak~Led~G--c~avMPlgsPIGSg~Gi~n~~~l~~i~~~---~~vpvIvDAGIG 197 (265)
T 1wv2_A 123 ETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIG--CIAVMPLAGLIGSGLGICNPYNLRIILEE---AKVPVLVDAGVG 197 (265)
T ss_dssp HHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSC--CSEEEECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCC--CCEEEECCCHHHHCCCCCCHHHHHHHHHC---CCCEEEEECCCC
T ss_conf 8999999997479169995074399999998669--84875343565544574787899988732---783289726889
Q ss_pred CHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHH
Q ss_conf 788999999669964865-----79888999999999999
Q T0634 87 HKEAIVNGLHSGADDYLT-----KPFNRNDLLSRIEIHLR 121 (140)
Q Consensus 87 ~~~~~~~a~~~Ga~dyl~-----KP~~~~eL~~~i~~~lr 121 (140)
.+.+..++++.|+|..|. |--+|..+....+....
T Consensus 198 ~pSdAa~aMElG~DaVLvNTAIA~a~dPv~MA~A~~~AV~ 237 (265)
T 1wv2_A 198 TASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp SHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
T ss_conf 8899999997108999943476627998999999999999
No 114
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, degradation of homoprotocatechuate, class II aldolase; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=84.12 E-value=2.1 Score=21.56 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=69.2
Q ss_pred HHHHHHHCCCEEE--E-ECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHH
Q ss_conf 9999987299899--9-859799999998489989998613688770689999984336899717873167878899999
Q T0634 18 ELKNFLDSEYLVI--E-SKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNG 94 (140)
Q Consensus 18 ~l~~~L~~~~~v~--~-a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a 94 (140)
.++.-|++|-.+. . ........+.+....+|.|++|+.=...|=-++...++..... .++.++=....+.....++
T Consensus 8 ~lk~~L~~g~~~~G~~~~~~sp~~~e~l~~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~-g~~~~vRvp~~~~~~i~r~ 86 (267)
T 2vws_A 8 PFKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPY-ASQPVIRPVEGSKPLIKQV 86 (267)
T ss_dssp HHHHHHHTTCCEEEEEECSCCHHHHHHHHTTCCSEEEEETTTSCCCHHHHHHHHHHHTTS-SSEEEEECSSCCHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHH
T ss_conf 999999879987999868999799999983898999980678989899999999986146-9974688157867999999
Q ss_pred HHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 96699648657988899999999
Q T0634 95 LHSGADDYLTKPFNRNDLLSRIE 117 (140)
Q Consensus 95 ~~~Ga~dyl~KP~~~~eL~~~i~ 117 (140)
+++||+..+.--++-.+=...+-
T Consensus 87 LD~Ga~GIivP~v~s~eea~~~v 109 (267)
T 2vws_A 87 LDIGAQTLLIPMVDTAEQARQVV 109 (267)
T ss_dssp HHTTCCEEEECCCCSHHHHHHHH
T ss_pred HHCCCCEEEECCCCCHHHHHHHH
T ss_conf 83899889989808889999999
No 115
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=83.68 E-value=2.2 Score=21.45 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=69.0
Q ss_pred HHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHH
Q ss_conf 9999987299899---9859799999998489989998613688770689999984336899717873167878899999
Q T0634 18 ELKNFLDSEYLVI---ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNG 94 (140)
Q Consensus 18 ~l~~~L~~~~~v~---~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a 94 (140)
-++.-|.+|-.+. .........+.+....+|.|++|+.=...+--++...++.-.... .+.++=....+.....++
T Consensus 9 ~~k~~L~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EH~~~~~~~~~~~~~a~~~~g-~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 9 KFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSA-SAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHHTTCCEEEEEECSCSHHHHHHHTTSCCSEEEEESSSSSCCHHHHHHHHHHTTTCS-SEEEEECSSSCHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHH
T ss_conf 9999997899649887678998999999816999999806889999999999999997469-975997899983799999
Q ss_pred HHCCCCEEEECCCCH-HHHHHHHH
Q ss_conf 966996486579888-99999999
Q T0634 95 LHSGADDYLTKPFNR-NDLLSRIE 117 (140)
Q Consensus 95 ~~~Ga~dyl~KP~~~-~eL~~~i~ 117 (140)
+++||+..+.--++. ++....++
T Consensus 88 LD~Ga~gi~vP~V~sae~a~~~v~ 111 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVA 111 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHH
T ss_pred HHCCCCEEECCCCCCHHHHHHHHH
T ss_conf 855988766465488999999999
No 116
>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain, hydrolase, signaling protein; HET: C2E FMN; 2.05A {Klebsiella pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A* 2kb2_A*
Probab=83.67 E-value=1.9 Score=21.85 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEECCCC-----CCCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 888999999999872998--99985979999999848998999861368-----87706899999843368997178731
Q T0634 11 QQDFSRIELKNFLDSEYL--VIESKNEKEALEQIDHHHPDLVILDMDII-----GENSPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 11 D~~~~r~~l~~~L~~~~~--v~~a~~~~eal~~~~~~~pdlii~D~~lp-----~~dG~~~~~~ir~~~~~~~iPiI~lt 83 (140)
+.+.....++.+-+.|+. +.-..+|...+..+...+||.|=+|-.+- +.....+++.|-+.....++.+|+ .
T Consensus 289 ~~~~~~~~l~~Lr~~G~~ialDdfG~g~~sl~~L~~l~~d~IKiD~~~v~~i~~~~~~~~~l~~iv~la~~lgi~vIA-e 367 (413)
T 3gfz_A 289 CFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVA-E 367 (413)
T ss_dssp CSTTHHHHHHHHHHHTCEEEEEEETSSSCSHHHHTTCCCSEEEECHHHHTTTTTBHHHHHHHHHHHHHHHHHTCEEEE-E
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEE-E
T ss_conf 468899999998853875355577887104899985899999989899841045966899999999999985998999-7
Q ss_pred CCCCHHHHHHHHHCCCCEE----EECCC
Q ss_conf 6787889999996699648----65798
Q T0634 84 SSEHKEAIVNGLHSGADDY----LTKPF 107 (140)
Q Consensus 84 a~~~~~~~~~a~~~Ga~dy----l~KP~ 107 (140)
+-.+.+....+.+.|++.+ +.||.
T Consensus 368 GVEt~~~~~~l~~lGid~~QGy~f~kP~ 395 (413)
T 3gfz_A 368 GVETLEEWCWLQSVGIRLFQGFLFSRPC 395 (413)
T ss_dssp CCCSHHHHHHHHHTTCCEEESTTTCCCE
T ss_pred ECCCHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 1882999999997799996548125259
No 117
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=83.44 E-value=0.73 Score=24.40 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=40.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCC-CCCH--HHHHHHHHCCCCCCCC
Q ss_conf 8636677388899999999987-2998999859799999998489989998613688-7706--8999998433689971
Q T0634 3 LKKILIIDQQDFSRIELKNFLD-SEYLVIESKNEKEALEQIDHHHPDLVILDMDIIG-ENSP--NLCLKLKRSKGLKNVP 78 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~-~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~-~dG~--~~~~~ir~~~~~~~iP 78 (140)
|++|||||-.++.-..+..+|+ .|..+....+..-.++.+....||.+++.=.-.. .+.. .....+.+. ....+|
T Consensus 1 ~~~~liiD~~dsft~Ni~~~l~~lG~~~~vi~~d~~~~~~i~~~~~~giilsgGp~~~~~~~~~~~~~~i~~~-~~~~~P 79 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKY-LGKRTP 79 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHH-HTTTSC
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHH-HCCCCC
T ss_conf 9879999788717999999999789937998489899999986499979989999980002233367999998-547997
Q ss_pred EEEEE
Q ss_conf 78731
Q T0634 79 LILLF 83 (140)
Q Consensus 79 iI~lt 83 (140)
|+-+-
T Consensus 80 iLGIC 84 (195)
T 1qdl_B 80 ILGVC 84 (195)
T ss_dssp EEEET
T ss_pred EEEEC
T ss_conf 78851
No 118
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=83.36 E-value=1.3 Score=22.77 Aligned_cols=32 Identities=31% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCHHHHHHH-HHHHHCCCEEEEEC
Q ss_conf 9986366773888999999-99987299899985
Q T0634 1 MSLKKILIIDQQDFSRIEL-KNFLDSEYLVIESK 33 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l-~~~L~~~~~v~~a~ 33 (140)
|||+||||.- .=.+-..+ +.+++.||.|....
T Consensus 1 M~m~kiLItG-aG~iG~~l~~~L~~~g~~V~~~~ 33 (286)
T 3gpi_A 1 MSLSKILIAG-CGDLGLELARRLTAQGHEVTGLR 33 (286)
T ss_dssp -CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9988699989-21999999999997859899997
No 119
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=83.09 E-value=2.3 Score=21.30 Aligned_cols=112 Identities=17% Similarity=0.231 Sum_probs=71.6
Q ss_pred CCEEEEE----CCCHHHHHHHHHHHHC-CCEEEE--E-CCHHHHHHHHHHCCCCEEEEECCCCC-CCC-HHHHHHHHHCC
Q ss_conf 8636677----3888999999999872-998999--8-59799999998489989998613688-770-68999998433
Q T0634 3 LKKILII----DQQDFSRIELKNFLDS-EYLVIE--S-KNEKEALEQIDHHHPDLVILDMDIIG-ENS-PNLCLKLKRSK 72 (140)
Q Consensus 3 m~rILiv----DD~~~~r~~l~~~L~~-~~~v~~--a-~~~~eal~~~~~~~pdlii~D~~lp~-~dG-~~~~~~ir~~~ 72 (140)
..||++. |-++.=..++..+|+. ||.|+- + ...++.++.+.++.||+|-+.-.|.. +.. -++++.+++.
T Consensus 98 ~gkvviaTV~GDvHDIGKniV~~~L~~~GfeVidLG~~Vp~e~~veaa~~~~~diIglSaLlt~sl~~M~~vi~~l~~~- 176 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQ- 176 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHT-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHC-
T ss_conf 8859999569762058899999999978988997888899999999999729999998384201599999999999965-
Q ss_pred CCCCCCEEEEECCCCHHHH---HHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 6899717873167878899---9999669964865798889999999
Q T0634 73 GLKNVPLILLFSSEHKEAI---VNGLHSGADDYLTKPFNRNDLLSRI 116 (140)
Q Consensus 73 ~~~~iPiI~lta~~~~~~~---~~a~~~Ga~dyl~KP~~~~eL~~~i 116 (140)
..++||++=-+-.+.... ......|++.|-.-.++.-.+..++
T Consensus 177 -g~~v~VlVGGA~~s~~f~~~~~~~~y~Gad~y~~DA~~aV~~a~~L 222 (579)
T 3bul_A 177 -GFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAAL 222 (579)
T ss_dssp -TCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCSHHHHHHHHHHH
T ss_pred -CCCCCEEEECCCCCHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHH
T ss_conf -9998389989777878764310225668807843999999999998
No 120
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=81.44 E-value=0.51 Score=25.38 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=33.5
Q ss_pred CCCCEEEEECCCHHH-HHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 998636677388899-99999998729989998-5979999999848998999861
Q T0634 1 MSLKKILIIDQQDFS-RIELKNFLDSEYLVIES-KNEKEALEQIDHHHPDLVILDM 54 (140)
Q Consensus 1 m~m~rILivDD~~~~-r~~l~~~L~~~~~v~~a-~~~~eal~~~~~~~pdlii~D~ 54 (140)
|+|+||||.--.-.+ +.+++.++++|+.|... .++.. +........+++..|+
T Consensus 1 M~~kkIlI~GatG~iG~~l~~~Ll~~g~~V~~~~R~~~~-~~~~~~~~~~~~~~D~ 55 (206)
T 1hdo_A 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR-LPSEGPRPAHVVVGDV 55 (206)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG-SCSSSCCCSEEEESCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH-CCCCCCCCEEEEECCC
T ss_conf 998889999999889999999999786989999848254-5443442001342242
No 121
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, amino-acid biosynthesis cobalamin, precorrin, novel fold; 2.10A {Thermotoga maritima}
Probab=81.19 E-value=2.7 Score=20.86 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=52.3
Q ss_pred HHHHHHHHHHCCC-CEEEEECCCCCC-CC--HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE-CCCCH
Q ss_conf 7999999984899-899986136887-70--6899999843368997178731678788999999669964865-79888
Q T0634 35 EKEALEQIDHHHP-DLVILDMDIIGE-NS--PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT-KPFNR 109 (140)
Q Consensus 35 ~~eal~~~~~~~p-dlii~D~~lp~~-dG--~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~-KP~~~ 109 (140)
..+.+..+.+... .+++.|+.--|+ .| +++++.+++ ...+|+|.--+-.+.++..++++.|++..+. +=|..
T Consensus 158 ~~~~~~~~~~~g~geil~t~V~~DGt~~G~d~~l~~~i~~---~~~~piI~sGGi~s~~di~~l~~~g~~gvi~gs~~~~ 234 (266)
T 2w6r_A 158 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRP---LTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 234 (266)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTTCSCCCHHHHHHHGG---GCCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-
T ss_pred CHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH---CCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEHHHC
T ss_conf 0233543315585858998887879868876799999986---1897789994799999999999789979998005565
Q ss_pred HH
Q ss_conf 99
Q T0634 110 ND 111 (140)
Q Consensus 110 ~e 111 (140)
.+
T Consensus 235 ~~ 236 (266)
T 2w6r_A 235 RE 236 (266)
T ss_dssp --
T ss_pred CC
T ss_conf 99
No 122
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2, protein structure initiative; 2.00A {Listeria monocytogenes}
Probab=80.59 E-value=0.62 Score=24.83 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=61.0
Q ss_pred HHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEECCCCC---CC---CHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 9999999987299899--9859799999998489989998613688---77---06899999843368997178731678
Q T0634 15 SRIELKNFLDSEYLVI--ESKNEKEALEQIDHHHPDLVILDMDIIG---EN---SPNLCLKLKRSKGLKNVPLILLFSSE 86 (140)
Q Consensus 15 ~r~~l~~~L~~~~~v~--~a~~~~eal~~~~~~~pdlii~D~~lp~---~d---G~~~~~~ir~~~~~~~iPiI~lta~~ 86 (140)
....++.+-+.|+.+. -..+|...+..+...+||.|-+|..+-. .+ ...+++.+......-++.+|+ ++-.
T Consensus 130 ~~~~l~~l~~~G~~ialDdfG~g~~sl~~l~~l~~d~vKid~~~~~~~~~~~~~~~~~l~~i~~~a~~~~~~vIa-eGVE 208 (235)
T 3kzp_A 130 ILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVV-EGIE 208 (235)
T ss_dssp HHHHHHHHHHTTCEEEECSTTSTTCCHHHHHHHGGGCSEEEEEGGGGTTSCHHHHHHHHHHHHHHHHHTTCEEEE-EEEC
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCCEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECC
T ss_conf 999999999769889981589986635453247875762541366543112034799999999999986998999-7389
Q ss_pred CHHHHHHHHHCCCCE----EEECCC
Q ss_conf 788999999669964----865798
Q T0634 87 HKEAIVNGLHSGADD----YLTKPF 107 (140)
Q Consensus 87 ~~~~~~~a~~~Ga~d----yl~KP~ 107 (140)
+.+....+.+.|++. |+.||.
T Consensus 209 t~~~~~~l~~lG~d~~QG~~~~~P~ 233 (235)
T 3kzp_A 209 TKETMTLLESHGVSIFQGYLVNKPF 233 (235)
T ss_dssp STHHHHHHHHTTCCSCEEEECCCCE
T ss_pred CHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 4999999998699994578345177
No 123
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=80.17 E-value=2.9 Score=20.65 Aligned_cols=53 Identities=13% Similarity=0.267 Sum_probs=33.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99863667738889999999998-72998999859799999998489989998613
Q T0634 1 MSLKKILIIDQQDFSRIELKNFL-DSEYLVIESKNEKEALEQIDHHHPDLVILDMD 55 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L-~~~~~v~~a~~~~eal~~~~~~~pdlii~D~~ 55 (140)
|+ +||||.- .=.+-..+...| ++||.|.......+....+.....+.+..|..
T Consensus 4 M~-~~vlI~G-aGfIGs~Lv~~L~~~G~~V~~l~R~~~~~~~l~~~~~~~~~~d~~ 57 (286)
T 3ius_A 4 MT-GTLLSFG-HGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGE 57 (286)
T ss_dssp -C-CEEEEET-CCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSS
T ss_pred CC-CEEEEEC-CHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECCCH
T ss_conf 99-8489988-629999999999978998999948816568887569558963510
No 124
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=79.43 E-value=3.1 Score=20.50 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=50.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC---C----CEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCC-----HHHHHHHHH
Q ss_conf 86366773888999999999872---9----98999859799999998489989998613688770-----689999984
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS---E----YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENS-----PNLCLKLKR 70 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~---~----~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG-----~~~~~~ir~ 70 (140)
..+|-+||=|+..-...+.++.. . -.-+...||.+.+....+..+|+||+|..-|.... .++.+.+++
T Consensus 144 v~~v~~VEID~~Vi~~a~~~fp~~~~~~~dpRv~iii~Da~~~l~~~~~~~yDvIIvD~~dp~~~~~~L~t~eF~~~~~~ 223 (334)
T 1xj5_A 144 IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVAR 223 (334)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHH
T ss_conf 54037842689999999984344303346997289988469998613246744799967888885433388999999997
Q ss_pred C
Q ss_conf 3
Q T0634 71 S 71 (140)
Q Consensus 71 ~ 71 (140)
.
T Consensus 224 ~ 224 (334)
T 1xj5_A 224 A 224 (334)
T ss_dssp H
T ss_pred H
T ss_conf 2
No 125
>1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=79.09 E-value=3.2 Score=20.44 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=56.6
Q ss_pred CCCC--EEEEECCCHHHHH-HHHHHHH-CCCEEEEE--CCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCC
Q ss_conf 9986--3667738889999-9999987-29989998--597999999984899899986136887706899999843368
Q T0634 1 MSLK--KILIIDQQDFSRI-ELKNFLD-SEYLVIES--KNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGL 74 (140)
Q Consensus 1 m~m~--rILivDD~~~~r~-~l~~~L~-~~~~v~~a--~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~ 74 (140)
|||+ ||.||-=-..-+. .+..+.. .++.++.. .+.+.+.+..++.. .|-.+.++-+ -..
T Consensus 1 m~mk~irigiIG~G~~~~~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~---------i~~~~~~e~l---~~~--- 65 (319)
T 1tlt_A 1 MSLKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR---------IPYADSLSSL---AAS--- 65 (319)
T ss_dssp ----CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT---------CCBCSSHHHH---HTT---
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHC---------CCCCCHHHHH---HCC---
T ss_conf 9987888999959999999999999838996899998799999999999819---------9834819998---404---
Q ss_pred CCCCEEEEEC-CCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHH
Q ss_conf 9971787316-787889999996699648657988--899999999
Q T0634 75 KNVPLILLFS-SEHKEAIVNGLHSGADDYLTKPFN--RNDLLSRIE 117 (140)
Q Consensus 75 ~~iPiI~lta-~~~~~~~~~a~~~Ga~dyl~KP~~--~~eL~~~i~ 117 (140)
.+. |++.|. ....+...+|+++|..=|+.||+. .++....++
T Consensus 66 ~D~-V~Iatp~~~H~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~ 110 (319)
T 1tlt_A 66 CDA-VFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVE 110 (319)
T ss_dssp CSE-EEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHH
T ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHCCCCCC
T ss_conf 431-123432100012332233322233303342001232023221
No 126
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=77.15 E-value=3.6 Score=20.08 Aligned_cols=92 Identities=14% Similarity=0.076 Sum_probs=52.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HCC-CEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 99863667738889999999998-729-9899985979999999848998999861368877068999998433689971
Q T0634 1 MSLKKILIIDQQDFSRIELKNFL-DSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L-~~~-~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
|+ +||+|+--= .+...+...| +.+ +.|..+..-.+..+.+....+..+..|.. |--++.+.++. .++-
T Consensus 4 m~-~kI~ViGaG-~vG~~ia~~L~~~~~~~v~~~dr~~~~~~~~~~~~~~~~~~d~~----d~~~l~~~~~~----~dvv 73 (118)
T 3ic5_A 4 MR-WNICVVGAG-KIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAK----DEAGLAKALGG----FDAV 73 (118)
T ss_dssp TC-EEEEEECCS-HHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTT----CHHHHHHHTTT----CSEE
T ss_pred CC-CCEEEECCC-HHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEECCCC----CHHHHHHHHCC----CCEE
T ss_conf 65-498998669-99999999998589987787506688876410222213540332----34689999669----9999
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 787316787889999996699648
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDY 102 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dy 102 (140)
++....+........|+++|+..+
T Consensus 74 i~~~p~~~~~~va~~~~~~gv~~~ 97 (118)
T 3ic5_A 74 ISAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEE
T ss_pred EECCCHHHHHHHHHHHHHCCCCEE
T ss_conf 989773411999999999099979
No 127
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=75.69 E-value=3.9 Score=19.84 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=54.0
Q ss_pred HHHHHHCCCEE-EEECCHHHHHHHHHHCCCCEEEEECC-----CCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHH
Q ss_conf 99998729989-99859799999998489989998613-----6887706899999843368997178731678788999
Q T0634 19 LKNFLDSEYLV-IESKNEKEALEQIDHHHPDLVILDMD-----IIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIV 92 (140)
Q Consensus 19 l~~~L~~~~~v-~~a~~~~eal~~~~~~~pdlii~D~~-----lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~ 92 (140)
++.+-+.+..+ ..+.+.++|.... +..+|.|++.-. .+..+-+.++..+++.- ++|||.--+..+.....
T Consensus 103 v~~l~~~g~~v~~~v~s~~~A~~a~-~~GaD~ivv~G~eaGGh~~~~~~~~Lv~~v~~~~---~iPvIaaGGI~~~~~~a 178 (332)
T 2z6i_A 103 MERFHEAGIIVIPVVPSVALAKRME-KIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAI---SIPVIAAGGIADGEGAA 178 (332)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHH-HTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHC---SSCEEEESSCCSHHHHH
T ss_pred HHHHHHHCCEEEEECCCHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHC---CCCEEEECCCCCHHHHH
T ss_conf 9999984987997149899999998-5699999963887888887858799999999962---89889868989999999
Q ss_pred HHHHCCCCEEEE
Q ss_conf 999669964865
Q T0634 93 NGLHSGADDYLT 104 (140)
Q Consensus 93 ~a~~~Ga~dyl~ 104 (140)
.++..||+....
T Consensus 179 aalalGAdgV~v 190 (332)
T 2z6i_A 179 AGFMLGAEAVQV 190 (332)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHHCCCEEEE
T ss_conf 999958694031
No 128
>3bwc_A Spermidine synthase; SAM, SGPP, structural genomics, PSI, protein structure initiative; HET: MSE SAM; 2.30A {Trypanosoma cruzi strain cl brener} PDB: 3bwb_A*
Probab=75.46 E-value=4 Score=19.80 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=47.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEE-EEECCHHHHHHHHHHCCCCEEEEECCCCCCC-----CHHHHHHHHHC
Q ss_conf 6366773888999999999872------9989-9985979999999848998999861368877-----06899999843
Q T0634 4 KKILIIDQQDFSRIELKNFLDS------EYLV-IESKNEKEALEQIDHHHPDLVILDMDIIGEN-----SPNLCLKLKRS 71 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~------~~~v-~~a~~~~eal~~~~~~~pdlii~D~~lp~~d-----G~~~~~~ir~~ 71 (140)
.+|-+||=|+..-...+.++.. .-.+ +...||.+-+....+..+|+||+|..-|... ..++.+.+++.
T Consensus 120 ~~v~~VEID~~Vi~~~~~~~p~~~~~~~dprv~i~i~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~ 199 (304)
T 3bwc_A 120 EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRI 199 (304)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHCHHHCCCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCHHHCHHHHHHHHHHH
T ss_conf 37999727989999998757010112259965999771899987370468778999489987741233449999999997
No 129
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=75.45 E-value=3.2 Score=20.43 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=20.7
Q ss_pred CCCCEEEEE-------CCCHHHH--HHHHHHHHCCCEEEEEC
Q ss_conf 998636677-------3888999--99999987299899985
Q T0634 1 MSLKKILII-------DQQDFSR--IELKNFLDSEYLVIESK 33 (140)
Q Consensus 1 m~m~rILiv-------DD~~~~r--~~l~~~L~~~~~v~~a~ 33 (140)
|||+||+|+ |..+..- ..+..+.+.|+.|+.++
T Consensus 4 ~~MKKvaviLsg~g~~DG~E~~E~~~p~~~L~raG~~V~~~s 45 (232)
T 1vhq_A 4 ITMKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFA 45 (232)
T ss_dssp --CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 664669999658988775319899999999998899899994
No 130
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B
Probab=75.01 E-value=4.1 Score=19.73 Aligned_cols=108 Identities=7% Similarity=-0.019 Sum_probs=56.8
Q ss_pred CCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEE--CCHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHHHH-HHHCCC
Q ss_conf 99863667738889-999999998729989998--597999999984---89989998613688770689999-984336
Q T0634 1 MSLKKILIIDQQDF-SRIELKNFLDSEYLVIES--KNEKEALEQIDH---HHPDLVILDMDIIGENSPNLCLK-LKRSKG 73 (140)
Q Consensus 1 m~m~rILivDD~~~-~r~~l~~~L~~~~~v~~a--~~~~eal~~~~~---~~pdlii~D~~lp~~dG~~~~~~-ir~~~~ 73 (140)
|++||||++.+... ..... .-++..|.+... .+..+..+.+.+ ..+|.+|............+.+. |..-+
T Consensus 1 M~KpkvL~~~~p~~~~~~~~-~~l~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~e~l~~~p- 78 (348)
T 2w2k_A 1 MPRPRVLLLGDPARHLDDLW-SDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLP- 78 (348)
T ss_dssp -CCCEEEECSSCCSSCHHHH-HHHHHHSEEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSC-
T ss_pred CCCCEEEEECCCCCCCHHHH-HHHHCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCC-
T ss_conf 99989999899752368999-9975686699779999799999987514378169997443576656887899997241-
Q ss_pred CCCCCEEEEECCC-CHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 8997178731678-7889999996699648657988899
Q T0634 74 LKNVPLILLFSSE-HKEAIVNGLHSGADDYLTKPFNRND 111 (140)
Q Consensus 74 ~~~iPiI~lta~~-~~~~~~~a~~~Ga~dyl~KP~~~~e 111 (140)
.++.+|...+.+ +.-+...+-+.|+.=.=....+...
T Consensus 79 -~~LK~I~~~~~G~d~iD~~~~~~~gI~v~n~p~~~~~a 116 (348)
T 2w2k_A 79 -SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTA 116 (348)
T ss_dssp -TTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHH
T ss_pred -CCCEEEEECCCCCCCCCHHHHHHCEEEEEECCEECCCC
T ss_conf -27279999984567506888832858886010102433
No 131
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative; 2.00A {Streptococcus agalactiae serogroup V}
Probab=74.26 E-value=4.3 Score=19.61 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=54.3
Q ss_pred CCCCEE--EEECCCHHHHHHHHHHHHC-CCEEEEECCHH--HHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 998636--6773888999999999872-99899985979--999999848998999861368877068999998433689
Q T0634 1 MSLKKI--LIIDQQDFSRIELKNFLDS-EYLVIESKNEK--EALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLK 75 (140)
Q Consensus 1 m~m~rI--LivDD~~~~r~~l~~~L~~-~~~v~~a~~~~--eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~ 75 (140)
|+|+|| -||---..-..-+..+... ++.++...|.. .+-+..++.+..-+. +. ...+-+.+. .
T Consensus 1 m~m~kik~giIG~G~i~~~h~~al~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~--------~~---~~e~l~~~~-i 68 (329)
T 3evn_A 1 MSLSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAY--------DK---LEDMLADES-I 68 (329)
T ss_dssp ----CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEE--------SC---HHHHHTCTT-C
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEE--------CC---HHHHHCCCC-C
T ss_conf 99888589999982999999999986899489999899999999999984998244--------88---999963876-4
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCH--HHHHHHHH
Q ss_conf 9717873167878899999966996486579888--99999999
Q T0634 76 NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNR--NDLLSRIE 117 (140)
Q Consensus 76 ~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~--~eL~~~i~ 117 (140)
+.-+|........+...+|+++|..=|+.||+.. +++...++
T Consensus 69 D~V~I~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~ 112 (329)
T 3evn_A 69 DVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFA 112 (329)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHH
T ss_pred CHHCCCCCHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
T ss_conf 40002342000013221011333110125453211111222222
No 132
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2a0n_A* 1gpw_A 1vh7_A 2rkx_A
Probab=74.13 E-value=4.3 Score=19.59 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=55.9
Q ss_pred ECCHHHHHHHHHHCCC-CEEEEECCCCCC-CC--HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE---
Q ss_conf 8597999999984899-899986136887-70--6899999843368997178731678788999999669964865---
Q T0634 32 SKNEKEALEQIDHHHP-DLVILDMDIIGE-NS--PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT--- 104 (140)
Q Consensus 32 a~~~~eal~~~~~~~p-dlii~D~~lp~~-dG--~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~--- 104 (140)
..+..+.+..+.+..+ .++++|+.--|+ .| +++++.+++ ...+|+|.--+-.+.++..++++.|++..+.
T Consensus 150 ~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~~l~~i~~---~~~~pii~sGGv~~~~dl~~l~~~g~~gvivgsa 226 (253)
T 1thf_D 150 GILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRP---LTTLPIIASGGAGKMEHFLEAFLAGADAALAASV 226 (253)
T ss_dssp EEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGG---GCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred CHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCC---CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHH
T ss_conf 2238899999975559879999753357667754111101024---5467189844889999999999779989998138
Q ss_pred ---CCCCHHHHHHHH
Q ss_conf ---798889999999
Q T0634 105 ---KPFNRNDLLSRI 116 (140)
Q Consensus 105 ---KP~~~~eL~~~i 116 (140)
+-++..++...+
T Consensus 227 l~~~~~~~~~~k~~l 241 (253)
T 1thf_D 227 FHFREIDVRELKEYL 241 (253)
T ss_dssp HHTTCSCHHHHHHHH
T ss_pred HHCCCCCHHHHHHHH
T ss_conf 676999999999999
No 133
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reductase family; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp}
Probab=73.73 E-value=4.4 Score=19.53 Aligned_cols=107 Identities=14% Similarity=0.049 Sum_probs=59.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HCCCEEEE-ECCHHHHHHHHHHCCCCEEEEECCCCCCCCH-HHHHHHHHCCCCCCC
Q ss_conf 99863667738889999999998-72998999-8597999999984899899986136887706-899999843368997
Q T0634 1 MSLKKILIIDQQDFSRIELKNFL-DSEYLVIE-SKNEKEALEQIDHHHPDLVILDMDIIGENSP-NLCLKLKRSKGLKNV 77 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L-~~~~~v~~-a~~~~eal~~~~~~~pdlii~D~~lp~~dG~-~~~~~ir~~~~~~~i 77 (140)
|||.+|||.--+.-+-..+...| +.|+.|.. +.+.+..-+...+....+.....++-+.+.+ .+.+.+.+.....+
T Consensus 1 ms~~~VlITGassGIG~a~A~~la~~G~~V~l~~R~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~~d- 79 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPE- 79 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCS-
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCE-
T ss_conf 9889899988854999999999998799899998989999999997399669998568999999999999999769967-
Q ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 17873167878899999966996486579888999999999999
Q T0634 78 PLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
Q Consensus 78 PiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr 121 (140)
+++-.+-...... +. ..+.+++...++.-+.
T Consensus 80 -ilin~ag~~~~~~-----------~~-~~~~e~~~~~~~~N~~ 110 (235)
T 3l6e_A 80 -LVLHCAGTGEFGP-----------VG-VYTAEQIRRVMESNLV 110 (235)
T ss_dssp -EEEEECCCC------------------CCCHHHHHHHHHHHHH
T ss_pred -EEEECCCCCCCCC-----------HH-HCCHHHHHHHHHHHHH
T ss_conf -9997997778988-----------27-6999999999999829
No 134
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=72.92 E-value=4.6 Score=19.41 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=55.4
Q ss_pred HHHHHHCCCEE-EEECCHHHHHHHHHHCCCCEEEEECCC----------------CCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 99998729989-998597999999984899899986136----------------8877068999998433689971787
Q T0634 19 LKNFLDSEYLV-IESKNEKEALEQIDHHHPDLVILDMDI----------------IGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 19 l~~~L~~~~~v-~~a~~~~eal~~~~~~~pdlii~D~~l----------------p~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
+..+-+.+..+ ..+.+..++.... +..+|.++++=.- +...-+.++..++.. .++|||.
T Consensus 138 i~~l~~~g~~v~~~v~s~~~a~~a~-~~g~D~iv~~G~eAGGH~g~~~~~~~~~~~~~~~~~l~~~v~~~---~~vPVia 213 (369)
T 3bw2_A 138 IARLRRAGTLTLVTATTPEEARAVE-AAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA---VDIPVVA 213 (369)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH---CSSCEEE
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEE
T ss_conf 9999975965998727789999999-82798777544567867887765444555304689899999973---6997794
Q ss_pred EECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 31678788999999669964865
Q T0634 82 LFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
=-+..+......++..||+....
T Consensus 214 AGGI~~g~~iaaAlalGAdgV~~ 236 (369)
T 3bw2_A 214 AGGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp ESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 06777999999999829787998
No 135
>3eyw_A C-terminal domain of glutathione-regulated potassium-efflux system protein KEFC fused...; KTN, RCK, K+ channel, K+ transport, K+ efflux; HET: FMN NAD; 2.40A {Escherichia coli K12}
Probab=71.38 E-value=5 Score=19.19 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=56.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 3667738889999999998729989998-597999999984899899986136887706899999843368997178731
Q T0634 5 KILIIDQQDFSRIELKNFLDSEYLVIES-KNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~~~~~v~~a-~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lt 83 (140)
.+.++|.++.....+ .+.|+.|... .+-.+.|..+.-...+++|+...= +..-+.+|..+|+. .++++||+-+
T Consensus 29 ~vvvID~d~~~v~~~---~~~g~~vi~GDat~~~vL~~Agi~~A~~vVia~~d-d~~n~~i~~~ar~~--~p~~~IiaRa 102 (413)
T 3eyw_A 29 KMVVLDHDPDHIETL---RKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD-PQTNLQLTEMVKEH--FPHLQIIARA 102 (413)
T ss_dssp CEEEEESCHHHHHHH---HHTTCCCEESCTTCHHHHHHHTTTTCSEEEECCSS-HHHHHHHHHHHHHH--CTTSEEEEEE
T ss_pred CEEEEECCHHHHHHH---HHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECC-HHHHHHHHHHHHHH--CCCCEEEEEE
T ss_conf 889998999999999---97699099953899999985697648999997198-89999999999997--8998399997
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 6787889999996699648657988
Q T0634 84 SSEHKEAIVNGLHSGADDYLTKPFN 108 (140)
Q Consensus 84 a~~~~~~~~~a~~~Ga~dyl~KP~~ 108 (140)
.+.+......++||+..+.--|.
T Consensus 103 --~d~~~~~~L~~aGad~Vi~e~~e 125 (413)
T 3eyw_A 103 --RDVDHYIRLRQAGVEKPERETFE 125 (413)
T ss_dssp --SSHHHHHHHHHTTCSCCEETTHH
T ss_pred --CCHHHHHHHHHCCCCEEECCHHH
T ss_conf --69999999997798999895279
No 136
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=70.60 E-value=5.2 Score=19.08 Aligned_cols=113 Identities=12% Similarity=-0.044 Sum_probs=69.6
Q ss_pred CCEEEEEC-CCH---HHH-HHHHHHHHC-CCEEEE--ECCHHHHHHHHHHCCCCEEEEECCCCC--CCCHHHHHHHHHCC
Q ss_conf 86366773-888---999-999999872-998999--859799999998489989998613688--77068999998433
Q T0634 3 LKKILIID-QQD---FSR-IELKNFLDS-EYLVIE--SKNEKEALEQIDHHHPDLVILDMDIIG--ENSPNLCLKLKRSK 72 (140)
Q Consensus 3 m~rILivD-D~~---~~r-~~l~~~L~~-~~~v~~--a~~~~eal~~~~~~~pdlii~D~~lp~--~dG~~~~~~ir~~~ 72 (140)
-|+|+++- ... ..| .....++.. |+.+.. ..+..++.+.+.+..++++++-..-.+ ..+-++++.+|+..
T Consensus 509 ~P~v~l~~lG~~a~~~~Ra~f~~n~~a~gG~e~~~~~~~t~~e~~~a~~~~~~~~~vicssd~~y~~~a~~~~~alk~~g 588 (637)
T 1req_B 509 RPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAG 588 (637)
T ss_dssp CCBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEECCCHHHHHHHHHHHTCSEEEEECCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 81768870586332104788888799844842035888998999999986599889995786106888999999999669
Q ss_pred CCCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 6899717873167878-8999999669964865798889999999999
Q T0634 73 GLKNVPLILLFSSEHK-EAIVNGLHSGADDYLTKPFNRNDLLSRIEIH 119 (140)
Q Consensus 73 ~~~~iPiI~lta~~~~-~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~ 119 (140)
+. ++++.+.... .......++|+++||---.|.-+.+..+...
T Consensus 589 --~~--~v~lAG~p~~~~~~~~~~~agvd~fi~~g~dv~~~L~~~~~~ 632 (637)
T 1req_B 589 --AK--ALYLSGAFKEFGDDAAEAEKLIDGRLFMGMDVVDTLSSTLDI 632 (637)
T ss_dssp --CS--EEEEESCGGGGGGGHHHHHHHCCCEECTTCCHHHHHHHHHHH
T ss_pred --CC--EEEEEECCCCCCCHHHHHHCCCCEEECCCCCHHHHHHHHHHH
T ss_conf --98--599972788742356899708760501897499999999998
No 137
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA; 2.00A {Aquifex aeolicus VF5}
Probab=69.91 E-value=5.4 Score=18.99 Aligned_cols=74 Identities=12% Similarity=0.299 Sum_probs=46.0
Q ss_pred HHHHHHHHHCCCCEEEEECCC--CCCCCH--------------------HHHHHHHHCCCCCCCCEEEEECCCC------
Q ss_conf 999999984899899986136--887706--------------------8999998433689971787316787------
Q T0634 36 KEALEQIDHHHPDLVILDMDI--IGENSP--------------------NLCLKLKRSKGLKNVPLILLFSSEH------ 87 (140)
Q Consensus 36 ~eal~~~~~~~pdlii~D~~l--p~~dG~--------------------~~~~~ir~~~~~~~iPiI~lta~~~------ 87 (140)
.+++..+.+...|+|-+.+-. |-.||. ++++.+|. ...++|++++|.++.
T Consensus 34 ~~~l~~l~~~G~D~iElGiPfSDP~aDGpvIq~a~~ral~~g~~~~~~~~~~~~ir~--~~~~~pivlm~Y~N~~~~~G~ 111 (262)
T 2ekc_A 34 LKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRK--EFPDIPFLLMTYYNPIFRIGL 111 (262)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTSCEEEECCHHHHHHHCH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHC--CCCCCCEEEEECCCHHCCCCH
T ss_conf 999999997699999977888885556889999999999679977887655444210--368988899942425400789
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 889999996699648657988899
Q T0634 88 KEAIVNGLHSGADDYLTKPFNRND 111 (140)
Q Consensus 88 ~~~~~~a~~~Ga~dyl~KP~~~~e 111 (140)
.....+|.++|++..|.-..-.++
T Consensus 112 e~f~~~~~~~Gv~g~iipDlp~ee 135 (262)
T 2ekc_A 112 EKFCRLSREKGIDGFIVPDLPPEE 135 (262)
T ss_dssp HHHHHHHHHTTCCEEECTTCCHHH
T ss_pred HHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 999999997796189657886666
No 138
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=69.13 E-value=5.6 Score=18.89 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEECCCCC-CC---CHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 999999999872998--999859799999998489989998613688-77---068999998433689971787316787
Q T0634 14 FSRIELKNFLDSEYL--VIESKNEKEALEQIDHHHPDLVILDMDIIG-EN---SPNLCLKLKRSKGLKNVPLILLFSSEH 87 (140)
Q Consensus 14 ~~r~~l~~~L~~~~~--v~~a~~~~eal~~~~~~~pdlii~D~~lp~-~d---G~~~~~~ir~~~~~~~iPiI~lta~~~ 87 (140)
..+..++.+-..|+. +..+.++...++.+.+.+||.|=+|-.+-. .+ ...+++.+-......++.+| .++-.+
T Consensus 323 ~~~~~i~~l~~~G~~i~id~~g~~~~~~~~L~~l~~d~vKid~~~~~~i~~~~~~~~l~~~i~~~~~~~~~vi-a~gVe~ 401 (437)
T 3hvb_A 323 QAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSI-VPFVES 401 (437)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETCSSSHHHHHTTSCCSEEEECGGGSSCCSSHHHHHHHHHHHHHHHHTTCEEE-ECCCCS
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEE-EECCCC
T ss_conf 5556655540377625654789884348999828999999898998504886379999999999998599589-958893
Q ss_pred HHHHHHHHHCCCCE----EEECCCCHH
Q ss_conf 88999999669964----865798889
Q T0634 88 KEAIVNGLHSGADD----YLTKPFNRN 110 (140)
Q Consensus 88 ~~~~~~a~~~Ga~d----yl~KP~~~~ 110 (140)
.+....+.+.|++. |+.||....
T Consensus 402 ~~~~~~l~~~Gid~~QG~~~~~P~~~~ 428 (437)
T 3hvb_A 402 ASVLATLWQAGATYIQGYYLQGPSQAM 428 (437)
T ss_dssp HHHHHHHHHHTCSEEECTTTCCCBSSC
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCCHH
T ss_conf 999999997699998988225469856
No 139
>1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast structural genomics consortium, BTR28; 2.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.90.1.1
Probab=69.10 E-value=5.6 Score=18.88 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=54.4
Q ss_pred EEEEECCCHHHHHHHHHHH-HCC-----CEEEEECCHHH----HHHHHHHCCCCEEEEECCCCCCC--CHHHHHHHHHCC
Q ss_conf 3667738889999999998-729-----98999859799----99999848998999861368877--068999998433
Q T0634 5 KILIIDQQDFSRIELKNFL-DSE-----YLVIESKNEKE----ALEQIDHHHPDLVILDMDIIGEN--SPNLCLKLKRSK 72 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L-~~~-----~~v~~a~~~~e----al~~~~~~~pdlii~D~~lp~~d--G~~~~~~ir~~~ 72 (140)
.++++||....+.++..+= +.. +.-..-.+.++ -+..+.+...=.+++|-.+|..+ |.++++.+++.
T Consensus 33 d~i~~Edtr~~~kLL~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~l~~g~~v~lvsdaG~P~IsDPG~~lV~~~~~~- 111 (242)
T 1wyz_A 33 RHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQ- 111 (242)
T ss_dssp CEEEESCHHHHHHHHHHHCSSSCTTCCCCEECCSSCCHHHHHHHHHHHHTTCCEEEECC-------CHHHHHHHHHHHT-
T ss_pred CEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEECCHHHHHHHHHHCC-
T ss_conf 9999984789999999808865532223321345677776666668875396399996224310225256533332113-
Q ss_pred CCCCCCEEEEECCCCHHHHHH
Q ss_conf 689971787316787889999
Q T0634 73 GLKNVPLILLFSSEHKEAIVN 93 (140)
Q Consensus 73 ~~~~iPiI~lta~~~~~~~~~ 93 (140)
++|+.++-+-+.......
T Consensus 112 ---gi~v~vIPG~Ss~~~A~a 129 (242)
T 1wyz_A 112 ---KLKVIPLVGPSSIILSVM 129 (242)
T ss_dssp ---TCCEEECCCCCHHHHHHH
T ss_pred ---CCCCCCCCCCCCCEEEEE
T ss_conf ---422000235765213445
No 140
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=68.42 E-value=5.8 Score=18.80 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=26.9
Q ss_pred CC-CCEEEEECCCHHHHHHHHHH-HHCCCEEEEE-CCHH
Q ss_conf 99-86366773888999999999-8729989998-5979
Q T0634 1 MS-LKKILIIDQQDFSRIELKNF-LDSEYLVIES-KNEK 36 (140)
Q Consensus 1 m~-m~rILivDD~~~~r~~l~~~-L~~~~~v~~a-~~~~ 36 (140)
|+ |+||||.--.-.+-..+... +++||.|... .++.
T Consensus 1 m~~m~kIlVtGatG~iG~~l~~~Ll~~G~~V~~~~R~~~ 39 (227)
T 3dhn_A 1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE 39 (227)
T ss_dssp --CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 999998999889998999999999978398999986857
No 141
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=66.91 E-value=6.2 Score=18.61 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=47.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC---CC----EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCC-----CHHHHHHHHH
Q ss_conf 86366773888999999999872---99----899985979999999848998999861368877-----0689999984
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS---EY----LVIESKNEKEALEQIDHHHPDLVILDMDIIGEN-----SPNLCLKLKR 70 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~---~~----~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~d-----G~~~~~~ir~ 70 (140)
..+|-+||=|+..-...+.++.. ++ .-+...||.+.+.. ....+|+||+|..-|... ..++.+.+++
T Consensus 132 v~~v~~VEID~~Vi~~a~~~~p~~~~~~~dprv~i~i~Da~~~l~~-~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~ 210 (314)
T 2b2c_A 132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDVIITDSSDPVGPAESLFGQSYYELLRD 210 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEEEEECCC-------------HHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHCHHHCCCCCCCCEEEEEHHHHHHHHH-CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 5459997367899998865164312433587748996068999972-777778899927888886366633999999997
Q ss_pred C
Q ss_conf 3
Q T0634 71 S 71 (140)
Q Consensus 71 ~ 71 (140)
.
T Consensus 211 ~ 211 (314)
T 2b2c_A 211 A 211 (314)
T ss_dssp H
T ss_pred H
T ss_conf 3
No 142
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=66.68 E-value=4.4 Score=19.52 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=10.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 97178731678788999999669964865
Q T0634 76 NVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 76 ~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
++|+.+=-+-.+.+...++ .|||+.++
T Consensus 202 ~~Pv~vGFGI~~~~~~~~~--~~ADGvIV 228 (271)
T 1ujp_A 202 ALPVAVGFGVSGKATAAQA--AVADGVVV 228 (271)
T ss_dssp CSCEEEESCCCSHHHHHHH--TTSSEEEE
T ss_pred CCCEEEECCCCCHHHHHHH--CCCCEEEE
T ss_conf 6875875697988999874--68998998
No 143
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua}
Probab=66.65 E-value=6.3 Score=18.58 Aligned_cols=103 Identities=21% Similarity=0.229 Sum_probs=57.9
Q ss_pred CCCCEE--EEECCCHHHHHHHHHHHHC-CCEEEEECCH-HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 998636--6773888999999999872-9989998597-99999998489989998613688770689999984336899
Q T0634 1 MSLKKI--LIIDQQDFSRIELKNFLDS-EYLVIESKNE-KEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKN 76 (140)
Q Consensus 1 m~m~rI--LivDD~~~~r~~l~~~L~~-~~~v~~a~~~-~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~ 76 (140)
|+|+|+ .||-=-..-+.-+..+... ++.++.+.+. .+..+.+.+..+ |..+.++ .+-..+ +
T Consensus 1 m~mkk~~v~iIG~G~~g~~h~~~~~~~~~~~i~av~d~~~~~~~~~~~~~~---------~~~~~~~---~ll~~~---~ 65 (359)
T 3e18_A 1 MSLKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGL---------KIYESYE---AVLADE---K 65 (359)
T ss_dssp --CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTC---------CBCSCHH---HHHHCT---T
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCC---------CCCCCHH---HHHCCC---C
T ss_conf 998878299993689999999999848995899998799999999887199---------7019999---995599---9
Q ss_pred CCEEEEEC--CCCHHHHHHHHHCCCCEEEECCCCH--HHHHHHHHH
Q ss_conf 71787316--7878899999966996486579888--999999999
Q T0634 77 VPLILLFS--SEHKEAIVNGLHSGADDYLTKPFNR--NDLLSRIEI 118 (140)
Q Consensus 77 iPiI~lta--~~~~~~~~~a~~~Ga~dyl~KP~~~--~eL~~~i~~ 118 (140)
+-+++++. ....+....|+++|..=|+.||+.. ++....++.
T Consensus 66 iD~V~I~tp~~~H~~~~~~al~~gk~V~~EKP~a~~~~ea~~l~~~ 111 (359)
T 3e18_A 66 VDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDV 111 (359)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8989986880553356788886498399966865317775557899
No 144
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=66.27 E-value=5 Score=19.17 Aligned_cols=73 Identities=23% Similarity=0.200 Sum_probs=43.9
Q ss_pred EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC-CCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 899985979999999848998999861368877068999998433-6899717873167878899999966996486
Q T0634 28 LVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSK-GLKNVPLILLFSSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 28 ~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~-~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl 103 (140)
..+++.+-+++.+.+. ..+|.|.+|=.=|. +--+..+.+|... ..+++ .|..|+.-+.+...+.-+.|+|-+-
T Consensus 202 ieVEv~~~~ea~~a~~-~g~d~i~LDn~s~~-~~k~~v~~l~~~~~~~~~v-~ieaSGGI~~~ni~~ya~~GVD~Is 275 (294)
T 3c2e_A 202 IEVECLSEDEATEAIE-AGADVIMLDNFKGD-GLKMCAQSLKNKWNGKKHF-LLECSGGLNLDNLEEYLCDDIDIYS 275 (294)
T ss_dssp EEEECSSSHHHHHHHH-HTCSEEECCC----------------------CC-EEEEECCCCC------CCCSCSEEE
T ss_pred EEECCCCHHHHHHHHH-HCCCHHHHCCCCHH-HHHHHHHHHHHHHCCCCCE-EEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 9951546889999987-25633442589979-9999999998765448857-9999889999999999985999999
No 145
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=63.91 E-value=3 Score=20.57 Aligned_cols=71 Identities=10% Similarity=0.247 Sum_probs=46.5
Q ss_pred CCCCEEEEECCCCCC-CCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCC---CCEEEECCCCHHHHHHHHHHHH
Q ss_conf 899899986136887-706899999843368997178731678788999999669---9648657988899999999999
Q T0634 45 HHPDLVILDMDIIGE-NSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSG---ADDYLTKPFNRNDLLSRIEIHL 120 (140)
Q Consensus 45 ~~pdlii~D~~lp~~-dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~G---a~dyl~KP~~~~eL~~~i~~~l 120 (140)
..-|++|.++.-|+. .|+|+.-.... +.|||.+.-.. .+....++=.| ...|..+.++.+++...+...+
T Consensus 76 ~~sD~viA~~~~~d~Gt~~EiG~A~a~-----~kPvi~l~~~~-~~~~~s~mi~G~~~~~~~~v~dy~e~el~~~Ld~~~ 149 (165)
T 2khz_A 76 QQADVVVAEVTQPSLGVGYELGRAVAL-----GKPILCLFRPQ-SGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYF 149 (165)
T ss_dssp HHCSEEEEECSSCCHHHHHHHHHHHHT-----CSSEEEEECTT-TTCCCCHHHHHTCCSSSEEEEECCTTTHHHHHHHHH
T ss_pred HHCCEEEEECCCCCCCHHHHHHHHHHC-----CCEEEEEECCC-CHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 559999997799983069999999987-----99499996586-214588873388876728999564688899999998
Q ss_pred H
Q ss_conf 9
Q T0634 121 R 121 (140)
Q Consensus 121 r 121 (140)
+
T Consensus 150 ~ 150 (165)
T 2khz_A 150 E 150 (165)
T ss_dssp H
T ss_pred H
T ss_conf 5
No 146
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=63.20 E-value=7.3 Score=18.17 Aligned_cols=83 Identities=19% Similarity=0.129 Sum_probs=54.3
Q ss_pred HHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEECC-----CCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHH
Q ss_conf 9999987299899-9859799999998489989998613-----688770689999984336899717873167878899
Q T0634 18 ELKNFLDSEYLVI-ESKNEKEALEQIDHHHPDLVILDMD-----IIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAI 91 (140)
Q Consensus 18 ~l~~~L~~~~~v~-~a~~~~eal~~~~~~~pdlii~D~~-----lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~ 91 (140)
.++.+-+.+..+. .+.+.++|.... +..+|.+++.=. .+..+.+.++..+++. .++|+|.--+..+.+..
T Consensus 116 ~i~~l~~~g~~v~~~v~s~~~A~~a~-~~GaD~ivvqG~eAGGH~~~~~~~~Ll~~v~~~---~~iPvIaaGGI~~g~~i 191 (326)
T 3bo9_A 116 YIRELKENGTKVIPVVASDSLARMVE-RAGADAVIAEGMESGGHIGEVTTFVLVNKVSRS---VNIPVIAAGGIADGRGM 191 (326)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHHH
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH---HCCCEEEECCCCCHHHH
T ss_conf 99999981998999889999999999-739999998267578889964389899999997---48967966898999999
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 9999669964865
Q T0634 92 VNGLHSGADDYLT 104 (140)
Q Consensus 92 ~~a~~~Ga~dyl~ 104 (140)
..++..||+....
T Consensus 192 aaaLalGAdgV~~ 204 (326)
T 3bo9_A 192 AAAFALGAEAVQM 204 (326)
T ss_dssp HHHHHHTCSEEEE
T ss_pred HHHHHCCCCEEEE
T ss_conf 9999749887442
No 147
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=63.17 E-value=7.3 Score=18.17 Aligned_cols=84 Identities=18% Similarity=0.101 Sum_probs=46.0
Q ss_pred HHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHHCCCCCCCCEEEEECCCCH-HHH--HHHHHCCCCEEEECCCCHHHH
Q ss_conf 9999998489989998613688-770689999984336899717873167878-899--999966996486579888999
Q T0634 37 EALEQIDHHHPDLVILDMDIIG-ENSPNLCLKLKRSKGLKNVPLILLFSSEHK-EAI--VNGLHSGADDYLTKPFNRNDL 112 (140)
Q Consensus 37 eal~~~~~~~pdlii~D~~lp~-~dG~~~~~~ir~~~~~~~iPiI~lta~~~~-~~~--~~a~~~Ga~dyl~KP~~~~eL 112 (140)
.+++......|+++++|-.-+. ..+.++...+.+.-.....|+|+.+-..+. ... +..++ ++.=|-.-+.+.+.+
T Consensus 90 ~~l~~~~~~~~~~lilDE~~~~~~~~~~~~~~l~~~l~~~~~~ii~~~h~~~~~~~~~~i~~~~-~g~i~~v~~~nrd~~ 168 (178)
T 1ye8_A 90 RAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP-GAVLIELTPENRDVI 168 (178)
T ss_dssp HHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCT-TCEEEECCTTTTTTH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHCEEEEEC-CCEEEEECCCCHHHH
T ss_conf 9999997249988998347853221368999876521157846999983267787605488861-989999899637778
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q T0634 113 LSRIEIHLR 121 (140)
Q Consensus 113 ~~~i~~~lr 121 (140)
...|-..++
T Consensus 169 ~~~i~~~l~ 177 (178)
T 1ye8_A 169 LEDILSLLE 177 (178)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHHC
T ss_conf 999999970
No 148
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=63.15 E-value=7.3 Score=18.16 Aligned_cols=81 Identities=6% Similarity=0.048 Sum_probs=54.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCC-HHHHHHHHHCCCCCCCC
Q ss_conf 99863667738889999999998-72998999859799999998489989998613688770-68999998433689971
Q T0634 1 MSLKKILIIDQQDFSRIELKNFL-DSEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENS-PNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L-~~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG-~~~~~~ir~~~~~~~iP 78 (140)
|+ |+|||.--+.-+-..+...| +.|+.|+.+.-..+.++.+.+..++++..-..+-+.+. .++...+.+.-. .+-
T Consensus 1 mn-k~vlItGas~GiG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g--~id 77 (247)
T 3dii_A 1 MN-RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQ--RID 77 (247)
T ss_dssp -C-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHS--CCC
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCC--CCC
T ss_conf 99-889996689889999999999879989999798889999998358879998115998999999999999639--973
Q ss_pred EEEEEC
Q ss_conf 787316
Q T0634 79 LILLFS 84 (140)
Q Consensus 79 iI~lta 84 (140)
+++-.+
T Consensus 78 ~lv~~a 83 (247)
T 3dii_A 78 VLVNNA 83 (247)
T ss_dssp EEEECC
T ss_pred EEEEEC
T ss_conf 898641
No 149
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis}
Probab=63.07 E-value=7.3 Score=18.15 Aligned_cols=90 Identities=17% Similarity=0.256 Sum_probs=57.3
Q ss_pred EECCHHHHHHHHHHCCCCEEEEECCCC-----C--CCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 985979999999848998999861368-----8--770689999984336899717873167878899999966996486
Q T0634 31 ESKNEKEALEQIDHHHPDLVILDMDII-----G--ENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 31 ~a~~~~eal~~~~~~~pdlii~D~~lp-----~--~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl 103 (140)
.+.|.+++... .+...|.+.+.-..| + .-|++.++.+.+. ..+|++.+-+- ..+...+++++||+.+-
T Consensus 116 S~h~~ee~~~A-~~~gaDYi~~gpif~T~tK~~~~~~g~~~l~~~~~~---~~iPvvAiGGI-~~~ni~~~~~~Ga~gva 190 (221)
T 1yad_A 116 SVHSLEEAVQA-EKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR---ISIPVIAIGGM-TPDRLRDVKQAGADGIA 190 (221)
T ss_dssp EECSHHHHHHH-HHTTCSEEEEECCC----------CHHHHHHHHHHH---CCSCEEEESSC-CGGGHHHHHHTTCSEEE
T ss_pred HCCCHHHHHHH-HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH---CCCCEEECCCC-CHHHHHHHHHHCCCEEE
T ss_conf 00439998889-984112410023455444431024568888788862---57747864789-99999999982998999
Q ss_pred E-----CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5-----798889999999999999999
Q T0634 104 T-----KPFNRNDLLSRIEIHLRTQNY 125 (140)
Q Consensus 104 ~-----KP~~~~eL~~~i~~~lr~~~~ 125 (140)
. +--+|.+-..+++..++..+.
T Consensus 191 v~saI~~a~dp~~~~~~~~~~l~~~~~ 217 (221)
T 1yad_A 191 VMSGIFSSAEPLEAARRYSRKLKEMRY 217 (221)
T ss_dssp ESHHHHTSSSHHHHHHHHHHHHHHHC-
T ss_pred EEHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 739987799999999999999999876
No 150
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A*
Probab=62.91 E-value=7.4 Score=18.14 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=46.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC---C---CE-EEEECCHHHHHHHHHHCCCCEEEEECCCCCCC-----CHHHHHHHHH
Q ss_conf 86366773888999999999872---9---98-99985979999999848998999861368877-----0689999984
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS---E---YL-VIESKNEKEALEQIDHHHPDLVILDMDIIGEN-----SPNLCLKLKR 70 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~---~---~~-v~~a~~~~eal~~~~~~~pdlii~D~~lp~~d-----G~~~~~~ir~ 70 (140)
..+|.+||-++..-...+.++.. . -. -+...||.+.++. ....+|+||+|..-|... ..++.+.+++
T Consensus 119 ~~~v~~VEiD~~Vi~~a~~~~~~~~~~~~dprv~i~~~Da~~~l~~-~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~ 197 (304)
T 2o07_A 119 VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPMGPAESLFKESYYQLMKT 197 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-CSSCEEEEEEECC-----------CHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHCHHHCCCCCCCCEEEEECCHHHHHHH-CCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHH
T ss_conf 6417997057999999987375541344698559996479999973-777788899948998761566548999999999
Q ss_pred C
Q ss_conf 3
Q T0634 71 S 71 (140)
Q Consensus 71 ~ 71 (140)
.
T Consensus 198 ~ 198 (304)
T 2o07_A 198 A 198 (304)
T ss_dssp H
T ss_pred H
T ss_conf 7
No 151
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=62.39 E-value=7.5 Score=18.08 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=56.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 8636677388899999999987--29989998597999999984899899986136887706899999843368997178
Q T0634 3 LKKILIIDQQDFSRIELKNFLD--SEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~--~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI 80 (140)
|+.|+||-.-+.. .+..+.. ..+....|.||.--...-....||+||=|+.=-. -+..+.+++. .++++
T Consensus 1 Mk~i~Iv~gG~~~--~~~~l~~~~~~~~~~Ia~DgG~~~l~~~gi~pd~iiGDfDSi~---~~~~~~~~~~----~~~~~ 71 (222)
T 3lm8_A 1 MKTINIVAGGPKN--LIPDLTGYTDEHTLWIGVDKGTVTLLDAGIIPVEAFGDFDSIT---EQERRRIEKA----APALH 71 (222)
T ss_dssp -CEEEEECSSCGG--GSCCSGGGCCTTEEEEEETHHHHHHHHHTCCCSEEESCSTTSC---HHHHHHHHHH----CTTCE
T ss_pred CCEEEEEECCCCC--CCHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEECCCCCC---HHHHHHHHHC----CCEEE
T ss_conf 9599999899976--6777897304388899987189999977998698971688998---5776688753----87059
Q ss_pred EEECCCCHHHHHH----HHHCCCCEEEECCC---CHHHHHHHHHHHHH
Q ss_conf 7316787889999----99669964865798---88999999999999
Q T0634 81 LLFSSEHKEAIVN----GLHSGADDYLTKPF---NRNDLLSRIEIHLR 121 (140)
Q Consensus 81 ~lta~~~~~~~~~----a~~~Ga~dyl~KP~---~~~eL~~~i~~~lr 121 (140)
......+..+... |.+.|++..+.=-. ..+..++-+..+.+
T Consensus 72 ~~~~dKD~TD~ekAl~~~~~~~~~~i~i~G~~GGR~DH~lanl~~l~~ 119 (222)
T 3lm8_A 72 VYQAEKDQTDLDLALDWALEKQPDIIQIFGITGGRADHFLGNIQLLYK 119 (222)
T ss_dssp EECCCSSSCHHHHHHHHHHHHCCSEEEEESCCCSCHHHHHHHHHHHHH
T ss_pred ECCHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 948443758899999999875998999973679957789999999998
No 152
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A
Probab=62.14 E-value=7.6 Score=18.05 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=61.5
Q ss_pred HHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEECCCC-CC---CCHHHHHHHHHCCCCCCCCEEEEECCCCH
Q ss_conf 99999999872998--99985979999999848998999861368-87---70689999984336899717873167878
Q T0634 15 SRIELKNFLDSEYL--VIESKNEKEALEQIDHHHPDLVILDMDII-GE---NSPNLCLKLKRSKGLKNVPLILLFSSEHK 88 (140)
Q Consensus 15 ~r~~l~~~L~~~~~--v~~a~~~~eal~~~~~~~pdlii~D~~lp-~~---dG~~~~~~ir~~~~~~~iPiI~lta~~~~ 88 (140)
.+..++.+-+.|+. +....++...+..+...+||.|=+|-.+- .. .+..+++.+-.....-.+.+| .++-.+.
T Consensus 155 ~~~~i~~l~~~G~~lalddfg~~~~~l~~L~~l~~d~IKid~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vI-aegVE~~ 233 (268)
T 3hv8_A 155 AKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSI-VPFVESA 233 (268)
T ss_dssp HHHHHHHHHHTTCEEEEEEETCSSSTTGGGGTCCCSEEEECGGGGSSTTSHHHHHHHHHHHHHHHHTTCEEE-ECCCCSH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHCCCCCEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEE-EEECCCH
T ss_conf 888777651177615643689886535565405810688768998524410367999999999998499789-9947959
Q ss_pred HHHHHHHHCCCCE----EEECCCCHHH
Q ss_conf 8999999669964----8657988899
Q T0634 89 EAIVNGLHSGADD----YLTKPFNRND 111 (140)
Q Consensus 89 ~~~~~a~~~Ga~d----yl~KP~~~~e 111 (140)
+....+.+.|++. |+.||.+..+
T Consensus 234 ~~~~~l~~lgvd~~QG~~~~~P~~~~~ 260 (268)
T 3hv8_A 234 SVLATLWQAGATYIQGYYLQGPSQAMD 260 (268)
T ss_dssp HHHHHHHHHTCSEECSTTTCCCBSSCC
T ss_pred HHHHHHHHCCCCEEECCCCCCCCCHHH
T ss_conf 999999976999978782364797566
No 153
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; structural genomics, PSI, protein structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=61.45 E-value=7.8 Score=17.97 Aligned_cols=87 Identities=9% Similarity=-0.032 Sum_probs=54.0
Q ss_pred HHHHHHHHHHCC--CE-EEEECCHHHHHHHHHHCCCCEEEEECC------CCCCCCHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 999999998729--98-999859799999998489989998613------688770689999984336899717873167
Q T0634 15 SRIELKNFLDSE--YL-VIESKNEKEALEQIDHHHPDLVILDMD------IIGENSPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
Q Consensus 15 ~r~~l~~~L~~~--~~-v~~a~~~~eal~~~~~~~pdlii~D~~------lp~~dG~~~~~~ir~~~~~~~iPiI~lta~ 85 (140)
....+......+ -. +....+.+++.... +...|.|.+... .+..........++.. .++|+|.-.+-
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~a~-~~gad~i~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~iPvia~GGI 195 (234)
T 1yxy_A 120 IASFIRQVKEKYPNQLLMADISTFDEGLVAH-QAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCK---AGIAVIAEGKI 195 (234)
T ss_dssp HHHHHHHHHHHCTTCEEEEECSSHHHHHHHH-HTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHH---TTCCEEEESCC
T ss_pred HHHHHHHHHHHCCCCEEEECCCCHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHC---CCCCEEEECCC
T ss_conf 9999999997568956873479999999988-5299999981645877666741688999988743---79829985899
Q ss_pred CCHHHHHHHHHCCCCEEEEC
Q ss_conf 87889999996699648657
Q T0634 86 EHKEAIVNGLHSGADDYLTK 105 (140)
Q Consensus 86 ~~~~~~~~a~~~Ga~dyl~K 105 (140)
.+.++..+++++||+..+.=
T Consensus 196 ~~~~d~~~al~~GAdgV~VG 215 (234)
T 1yxy_A 196 HSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp CSHHHHHHHHTTCCSEEEEC
T ss_pred CCHHHHHHHHHCCCCEEEEC
T ss_conf 99999999998799999989
No 154
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=60.93 E-value=8 Score=17.92 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHCCC-CEEEEECCCCCC-CC--HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 97999999984899-899986136887-70--6899999843368997178731678788999999669964865
Q T0634 34 NEKEALEQIDHHHP-DLVILDMDIIGE-NS--PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 34 ~~~eal~~~~~~~p-dlii~D~~lp~~-dG--~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
+..+.++.+.+..+ .++++|+.--|+ .| +++++.+.+. ..+|+|.--+-...++..++.+.|++..+.
T Consensus 155 ~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~ll~~i~~~---~~~pii~~GGv~~~~dl~~l~~~g~~gvii 226 (253)
T 1h5y_A 155 DAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADS---VRIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 799999999847998899986602486788578999999864---898899987889999999998789917777
No 155
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X*
Probab=60.71 E-value=2.7 Score=20.89 Aligned_cols=70 Identities=9% Similarity=-0.020 Sum_probs=25.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 9999999848998999861368877068999998433689971787316787889999996699648657
Q T0634 36 KEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTK 105 (140)
Q Consensus 36 ~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~K 105 (140)
...+..+.+..++++.+.-.-....|......+.+.+...++-+|++.+..-.+...++.+.|+..+..-
T Consensus 39 ~~v~~~L~~~Gy~v~pVnP~~~~I~G~~~y~sl~dip~~iDlv~i~~p~~~~~~~l~~~~~~g~k~v~~~ 108 (144)
T 2d59_A 39 NIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWFQ 108 (144)
T ss_dssp HHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999999978998999897333007974566420146765079998588999999999997299999994
No 156
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=60.64 E-value=6.3 Score=18.55 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=48.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC---------------------CCCEEEEECCCCCCC
Q ss_conf 98636677388899999999987299899985979999999848---------------------998999861368877
Q T0634 2 SLKKILIIDQQDFSRIELKNFLDSEYLVIESKNEKEALEQIDHH---------------------HPDLVILDMDIIGEN 60 (140)
Q Consensus 2 ~m~rILivDD~~~~r~~l~~~L~~~~~v~~a~~~~eal~~~~~~---------------------~pdlii~D~~lp~~d 60 (140)
..++++|+--...-+.+.+.+.+.|+.|+....-.+.++.+... ..|.+++...-...
T Consensus 5 ~~~~~iIiG~G~~G~~la~~L~~~g~~vvviD~d~~~v~~~~~~~~~~i~gD~t~~~~L~~a~i~~a~~vii~~~~d~~- 83 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ- 83 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCCHH-
T ss_conf 5786999888899999999999889909999687899887774596699902788778864697548999999388489-
Q ss_pred CHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHH-HHHHHH
Q ss_conf 0689999984336899717873167878899999966996486579888999999-999999
Q T0634 61 SPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSR-IEIHLR 121 (140)
Q Consensus 61 G~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~-i~~~lr 121 (140)
..-++..+++.. ..|-|+..+ .+.+........|++.. ++|..+.++ +...+.
T Consensus 84 ~~~~~~~~~~~~---~~~~ii~~~-~~~~~~~~l~~~G~d~v----i~p~~~~a~~l~~~l~ 137 (144)
T 2hmt_A 84 ASTLTTLLLKEL---DIPNIWVKA-QNYYHHKVLEKIGADRI----IHPEKDMGVKIAQSLS 137 (144)
T ss_dssp HHHHHHHHHHHT---TCSEEEEEC-CSHHHHHHHHHHTCSEE----ECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCEEEEEE-ECHHHHHHHHHCCCCEE----ECHHHHHHHHHHHHHC
T ss_conf 999999999867---998699999-44345999997899999----9969999999999976
No 157
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=60.06 E-value=8.3 Score=17.82 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=43.0
Q ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEEEEC---CHHHHHHHHHHCCCCEEEEECC--CCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 36677388899999999987-299899985---9799999998489989998613--68877068999998433689971
Q T0634 5 KILIIDQQDFSRIELKNFLD-SEYLVIESK---NEKEALEQIDHHHPDLVILDMD--IIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~-~~~~v~~a~---~~~eal~~~~~~~pdlii~D~~--lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
+|||||-.++.-..+..+|+ .|..|.... ......+.+....||-||+.=. -|. +..+....++.. ...+|
T Consensus 2 ~iliiDn~dsft~Niv~~l~~~g~~v~v~~n~~~~~~~~~~~~~~~~dgiilsgGpg~p~-~~~~~~~~~~~~--~~~~P 78 (192)
T 1i1q_B 2 DILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPS-EAGCMPELLTRL--RGKLP 78 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGG-GSTTHHHHHHHH--BTTBC
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCC-CCCCCHHHHHHH--HCCCC
T ss_conf 499994888079999999986879699997998653109999860999798899998813-255619999998--56999
Q ss_pred EEEEE
Q ss_conf 78731
Q T0634 79 LILLF 83 (140)
Q Consensus 79 iI~lt 83 (140)
|+-+-
T Consensus 79 iLGIC 83 (192)
T 1i1q_B 79 IIGIC 83 (192)
T ss_dssp EEEET
T ss_pred EEEEH
T ss_conf 87315
No 158
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=59.80 E-value=8.4 Score=17.79 Aligned_cols=41 Identities=27% Similarity=0.156 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 9986366773888999999999872998999859799999998
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDSEYLVIESKNEKEALEQID 43 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~~~~v~~a~~~~eal~~~~ 43 (140)
|+| ||+|+--- .+-..+...|..++.|.......+-++.++
T Consensus 1 m~M-kI~I~GaG-aiG~~~a~~L~~~~~V~~~~r~~~~~~~i~ 41 (307)
T 3ego_A 1 MSL-KIGIIGGG-SVGLLCAYYLSLYHDVTVVTRRQEQAAAIQ 41 (307)
T ss_dssp -CC-EEEEECCS-HHHHHHHHHHHTTSEEEEECSCHHHHHHHH
T ss_pred CCC-EEEEECCC-HHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf 998-89999955-999999999977498699988889999999
No 159
>3dqq_A Putative tRNA synthase; structural genomics, csgid, unknown function, center for structural genomics of infectious diseases; 2.70A {Salmonella typhimurium}
Probab=59.19 E-value=8.6 Score=17.73 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=6.7
Q ss_pred CCEEEEECCCHHHHH
Q ss_conf 863667738889999
Q T0634 3 LKKILIIDQQDFSRI 17 (140)
Q Consensus 3 m~rILivDD~~~~r~ 17 (140)
|.||+|+.||.+=..
T Consensus 2 M~kl~iiADDlTGA~ 16 (421)
T 3dqq_A 2 MLKIGVIADDFTGAT 16 (421)
T ss_dssp CCCEEEEESSHHHHH
T ss_pred CCEEEEEECCCHHHH
T ss_conf 718999954843089
No 160
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium}
Probab=59.03 E-value=8.6 Score=17.71 Aligned_cols=84 Identities=8% Similarity=0.134 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHCCCCEEEEECCC----CCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE-----
Q ss_conf 97999999984899899986136----887706899999843368997178731678788999999669964865-----
Q T0634 34 NEKEALEQIDHHHPDLVILDMDI----IGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT----- 104 (140)
Q Consensus 34 ~~~eal~~~~~~~pdlii~D~~l----p~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~----- 104 (140)
+..+....+.+...|.+++-... .+.+..+-...+|+.. ... .|.+++-...+...+++++||+.++.
T Consensus 115 ~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~-~i~v~gGi~~~~~~~~~~~Gad~iVVGraI~ 191 (211)
T 3f4w_A 115 DLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVR--RKA-RIAVAGGISSQTVKDYALLGPDVVIVGSAIT 191 (211)
T ss_dssp SHHHHHHHHHHHTCCEEEEECCHHHHHTTCCSHHHHHHHHHHC--SSC-EEEEESSCCTTTHHHHHTTCCSEEEECHHHH
T ss_pred CHHHHHHHHHHCCCCEEEEHHCCCCHHCCCCCHHHHHHHHHHC--CCC-CEEECCCCCCCCHHHHHHCCCCEEEECHHHH
T ss_conf 9999999876378332541204664110676899999999856--997-3875798561489999985989999885872
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 7988899999999999
Q T0634 105 KPFNRNDLLSRIEIHL 120 (140)
Q Consensus 105 KP~~~~eL~~~i~~~l 120 (140)
+-=||.+-..+++..+
T Consensus 192 ~a~dp~~aa~~i~e~i 207 (211)
T 3f4w_A 192 HAADPAGEARKISQVL 207 (211)
T ss_dssp TCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 7999999999999999
No 161
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032}
Probab=57.70 E-value=9.1 Score=17.57 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=54.5
Q ss_pred CCCC-EEEEECCCHHHHHHHHHHHH-CCCEEEEE--CCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9986-36677388899999999987-29989998--59799999998489989998613688770689999984336899
Q T0634 1 MSLK-KILIIDQQDFSRIELKNFLD-SEYLVIES--KNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKN 76 (140)
Q Consensus 1 m~m~-rILivDD~~~~r~~l~~~L~-~~~~v~~a--~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~ 76 (140)
|+|. ||-||-=-..-+.-+..+.. .++.++.. .+.+.+-...++..+. ..+. ...+-..+. .+
T Consensus 1 m~~~irvgiIG~G~~g~~h~~~~~~~~~~~lvav~d~~~~~~~~~a~~~~i~---------~~~~---~~e~l~~~~-iD 67 (344)
T 3euw_A 1 MSLTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAE---------AVAS---PDEVFARDD-ID 67 (344)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCE---------EESS---HHHHTTCSC-CC
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCC---------EECC---HHHHHCCCC-CC
T ss_conf 9986679899970999999999970899589999889999999999983997---------7898---999954899-88
Q ss_pred CCEEEEEC--CCCHHHHHHHHHCCCCEEEECCCCH--HHHHHHHH
Q ss_conf 71787316--7878899999966996486579888--99999999
Q T0634 77 VPLILLFS--SEHKEAIVNGLHSGADDYLTKPFNR--NDLLSRIE 117 (140)
Q Consensus 77 iPiI~lta--~~~~~~~~~a~~~Ga~dyl~KP~~~--~eL~~~i~ 117 (140)
+++++. ....+....|+++|..=|+.||+.. ++....++
T Consensus 68 --~V~I~tp~~~H~~~~~~al~~gk~vl~EKPla~~~~ea~~l~~ 110 (344)
T 3euw_A 68 --GIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKE 110 (344)
T ss_dssp --EEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHH
T ss_pred --EEEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHH
T ss_conf --6641121010123321001222222135531010000245666
No 162
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=57.69 E-value=7.5 Score=18.08 Aligned_cols=107 Identities=11% Similarity=0.112 Sum_probs=50.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 86366773888999999999872998-99985979999999848998999861368877068999998433689971787
Q T0634 3 LKKILIIDQQDFSRIELKNFLDSEYL-VIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~~~~-v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
|+|++|+-.-+..-.. ......+. +++|..|..-+.. ....||+||=|+.=-.....+. +++. .++++.
T Consensus 1 m~~~~iv~gG~~~~~~--~~~~~~~d~iIaaDgGa~~l~~-~gi~Pd~iiGDfDSi~~~~~~~---~~~~----~~~~i~ 70 (222)
T 3mel_A 1 MSRVLLVAGGNPSDWP--TIEPATYDYFVGIDRGCLHLLE-ADLPLQLAVGDFDSLSREEYHF---VQET----TETLIQ 70 (222)
T ss_dssp -CEEEEECSSCGGGCC--CCCGGGCSCEEEETTHHHHHHT-TTCCCCEEEECCTTSCTTHHHH---HHHH----CSSEEE
T ss_pred CCEEEEEECCCCCHHH--HHHHHCCCEEEEECHHHHHHHH-CCCCCCEEEECCCCCCHHHHHH---HHHC----CCEEEE
T ss_conf 9589999899773023--4433018989998209999997-6998698970676897677679---9857----988999
Q ss_pred EECCCCHHHHHHHH----H-CCCCEEEECCC---CHHHHHHHHHHH
Q ss_conf 31678788999999----6-69964865798---889999999999
Q T0634 82 LFSSEHKEAIVNGL----H-SGADDYLTKPF---NRNDLLSRIEIH 119 (140)
Q Consensus 82 lta~~~~~~~~~a~----~-~Ga~dyl~KP~---~~~eL~~~i~~~ 119 (140)
.....+..+...|+ + .|.+..+.=.. ..+..++-+..+
T Consensus 71 ~~~~kD~TD~ekAl~~~~~~~~~~~i~i~G~~GgR~DH~lanl~~l 116 (222)
T 3mel_A 71 APAEKDDTDTQLALQEALQRFPQAEMTIIGATGGRIDHLLANLWLP 116 (222)
T ss_dssp CCSSCSSCHHHHHHHHHHHHCTTSEEEEECCCSSCHHHHHHHHTGG
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9855674279999999986469986999945789675899999999
No 163
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=57.05 E-value=9.3 Score=17.51 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=57.5
Q ss_pred CCCCEEEEECCCHHHHH-HHHHHHHC-CCEEEEECCH-HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 99863667738889999-99999872-9989998597-999999984899899986136887706899999843368997
Q T0634 1 MSLKKILIIDQQDFSRI-ELKNFLDS-EYLVIESKNE-KEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNV 77 (140)
Q Consensus 1 m~m~rILivDD~~~~r~-~l~~~L~~-~~~v~~a~~~-~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~i 77 (140)
|+|-||.||-=-...+. .+..+... +..++.+.|. .+..+.+.+..+..-+ .+.++ ..+.. +. .+
T Consensus 3 m~~irigiiG~G~~~~~~h~~~l~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~-------~~~~~--ell~~-~~-~D- 70 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPV-------LDNVP--AMLNQ-VP-LD- 70 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCE-------ESSHH--HHHHH-SC-CS-
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCE-------ECCHH--HHHCC-CC-CC-
T ss_conf 425589999471999999999998399958999988999999999988499854-------28999--99659-99-99-
Q ss_pred CEEEE-EC-CCCHHHHHHHHHCCCCEEEECCCCH--HHHHHHHHH
Q ss_conf 17873-16-7878899999966996486579888--999999999
Q T0634 78 PLILL-FS-SEHKEAIVNGLHSGADDYLTKPFNR--NDLLSRIEI 118 (140)
Q Consensus 78 PiI~l-ta-~~~~~~~~~a~~~Ga~dyl~KP~~~--~eL~~~i~~ 118 (140)
+|++ |. ....+...+|+++|..=|+.||+.. .+....++.
T Consensus 71 -~V~I~tp~~~H~~~a~~al~~GkhVl~EKPla~~~~ea~~l~~~ 114 (359)
T 3m2t_A 71 -AVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDA 114 (359)
T ss_dssp -EEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHH
T ss_pred -EEEECCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf -89987865662589999974399627976400014688998888
No 164
>3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=56.02 E-value=5.5 Score=18.91 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=57.6
Q ss_pred CCCEEEEECCC----HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHH-HCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 98636677388----89999999998729989998597------99999998-489989998613688770689999984
Q T0634 2 SLKKILIIDQQ----DFSRIELKNFLDSEYLVIESKNE------KEALEQID-HHHPDLVILDMDIIGENSPNLCLKLKR 70 (140)
Q Consensus 2 ~m~rILivDD~----~~~r~~l~~~L~~~~~v~~a~~~------~eal~~~~-~~~pdlii~D~~lp~~dG~~~~~~ir~ 70 (140)
+||+|.||--+ ..-...++.+++.||.+.-..-- ..+..-+. -..+|+ +++-.|.....++++.+.+
T Consensus 3 ~~K~vaVVGAS~~~~k~g~~v~~~L~~~Gy~V~pVNP~~~~I~G~~~y~sl~~p~~vD~--v~i~~p~~~~~~~~~e~~~ 80 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDT--VTLYINPQNQLSEYNYILS 80 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCE--EEECSCHHHHGGGHHHHHH
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEECCCCCCCCCE--EEEEECHHHHHHHHHHHHH
T ss_conf 76639999876999980999999999789989998565760000589973434689879--9999688998999999985
Q ss_pred CCCCCCCC-EEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 33689971-787316787889999996699648
Q T0634 71 SKGLKNVP-LILLFSSEHKEAIVNGLHSGADDY 102 (140)
Q Consensus 71 ~~~~~~iP-iI~lta~~~~~~~~~a~~~Ga~dy 102 (140)
. .++ +++-++..+.+....+.++|..-.
T Consensus 81 ~----g~k~vw~q~G~~~ee~~~~a~~~Gi~vi 109 (122)
T 3ff4_A 81 L----KPKRVIFNPGTENEELEEILSENGIEPV 109 (122)
T ss_dssp H----CCSEEEECTTCCCHHHHHHHHHTTCEEE
T ss_pred C----CCCEEEEECCCCCHHHHHHHHHCCCEEE
T ss_conf 3----9999999359879999999999699799
No 165
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=55.55 E-value=9.8 Score=17.35 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=38.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC----------------------------------HHHHHHHHHHCC
Q ss_conf 9986366773888999999999872998999859----------------------------------799999998489
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDSEYLVIESKN----------------------------------EKEALEQIDHHH 46 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~~~~v~~a~~----------------------------------~~eal~~~~~~~ 46 (140)
|.+.||+++--...-...++.+++.++.|..+-+ ..+.++.+++..
T Consensus 20 ~~~mrIvf~Gs~~f~~~~L~~L~~~~~~i~~V~T~pdk~~~~~~v~~~A~~~~ipv~~~~~~~~~~~~~~~~~~~~~~~~ 99 (329)
T 2bw0_A 20 FQSMKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALG 99 (329)
T ss_dssp -CCCEEEEECCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTC
T ss_pred HHCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 54328999889799999999999889978999928998989897999999839988764336870014899999998609
Q ss_pred CCEEEEE
Q ss_conf 9899986
Q T0634 47 PDLVILD 53 (140)
Q Consensus 47 pdlii~D 53 (140)
||++++-
T Consensus 100 ~Dl~v~~ 106 (329)
T 2bw0_A 100 AELNVLP 106 (329)
T ss_dssp CSEEEES
T ss_pred CCCCHHH
T ss_conf 9731123
No 166
>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=55.39 E-value=9.9 Score=17.34 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=51.3
Q ss_pred CC-CCEEEEECCCHHHHHHHHHHHH-CCCE-EEEECCHHHHHHHHHH--CCCCEEEEE----------CCCC----CCCC
Q ss_conf 99-8636677388899999999987-2998-9998597999999984--899899986----------1368----8770
Q T0634 1 MS-LKKILIIDQQDFSRIELKNFLD-SEYL-VIESKNEKEALEQIDH--HHPDLVILD----------MDII----GENS 61 (140)
Q Consensus 1 m~-m~rILivDD~~~~r~~l~~~L~-~~~~-v~~a~~~~eal~~~~~--~~pdlii~D----------~~lp----~~dG 61 (140)
|+ ..||+.+-..+..+..+..+-. .++. +....+-.+|.+..++ ..+|+||.- ...| ..+|
T Consensus 1 m~~~~ki~~Iapy~~l~~l~~~~a~e~~~~~~~~~~~l~e~~~iA~~l~~~~DVIISRGgta~~Ir~~~~iPVVeI~vs~ 80 (196)
T 2q5c_A 1 MSLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTR 80 (196)
T ss_dssp -CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCH
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCEEEEECCH
T ss_conf 98630699986818999999999975174401333429999999998544998999896589999984899889970788
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 6899999843368
Q T0634 62 PNLCLKLKRSKGL 74 (140)
Q Consensus 62 ~~~~~~ir~~~~~ 74 (140)
+++++.++.-...
T Consensus 81 ~Dil~al~~a~~~ 93 (196)
T 2q5c_A 81 FDTMRAVYNAKRF 93 (196)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHH
T ss_conf 6899999999963
No 167
>1vr0_A Probable 2-phosphosulfolactate phosphatase; 15026306, putative 2-phosphosulfolactate phosphatase, structural genomics; HET: 3SL; 2.49A {Clostridium acetobutylicum} SCOP: c.148.1.1
Probab=54.84 E-value=10 Score=17.28 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=37.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 36677388899999999987299-8999859799999998489989998613
Q T0634 5 KILIIDQQDFSRIELKNFLDSEY-LVIESKNEKEALEQIDHHHPDLVILDMD 55 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~~~~-~v~~a~~~~eal~~~~~~~pdlii~D~~ 55 (140)
++.||=|--..-..+...|..|. .|.-+.+.++|.+..++.+|+.++..-.
T Consensus 32 ~~vVVIDVLRAtTTi~~Al~~Ga~~V~Pv~~~eeA~~~~~~~~~~~ll~GEr 83 (247)
T 1vr0_A 32 KTAVVIDMLRATSVITTALNNGCKRVVPVLTVEEALKKVKEYGKDAILGGER 83 (247)
T ss_dssp SEEEEECTTTHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHGGGEEEEECB
T ss_pred CEEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEC
T ss_conf 9899996767299999999889978999488899999986068985898725
No 168
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2, protein structure initiative; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=54.63 E-value=6.4 Score=18.53 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=35.0
Q ss_pred CCCCEEEEECCCHH-HHHHHHHHHH-CCCEEEEE--CCHHHHHHHHHHCCCCEEEE-ECCCCCCCC----HHHHHHHHHC
Q ss_conf 99863667738889-9999999987-29989998--59799999998489989998-613688770----6899999843
Q T0634 1 MSLKKILIIDQQDF-SRIELKNFLD-SEYLVIES--KNEKEALEQIDHHHPDLVIL-DMDIIGENS----PNLCLKLKRS 71 (140)
Q Consensus 1 m~m~rILivDD~~~-~r~~l~~~L~-~~~~v~~a--~~~~eal~~~~~~~pdlii~-D~~lp~~dG----~~~~~~ir~~ 71 (140)
||||+|||+--.+. .--.+..+|+ .|+.+... ..++ .+-. .-..+|.+|+ .-.+.-.|- .++...||+.
T Consensus 1 m~mk~ilviqh~~~e~~g~~~~~l~~~g~~~~~~~~~~~~-~~P~-~l~~~dglii~Gg~~~~~d~~p~~~~~~~li~~~ 78 (250)
T 3m3p_A 1 MSLKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSD-PLPA-EIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDA 78 (250)
T ss_dssp -CCCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTC-CCCS-CGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCC-CCCC-CHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9986299996789998069999998689979999789998-7877-8656899999199987778786689999999999
Q ss_pred CCCCCCCEEEE
Q ss_conf 36899717873
Q T0634 72 KGLKNVPLILL 82 (140)
Q Consensus 72 ~~~~~iPiI~l 82 (140)
-. ..+|++-+
T Consensus 79 ~~-~~~PiLGI 88 (250)
T 3m3p_A 79 VA-QRVPVIGH 88 (250)
T ss_dssp HH-HTCCEEEE
T ss_pred HH-CCCCEEEE
T ss_conf 97-69988998
No 169
>3c85_A Putative glutathione-regulated potassium-efflux system protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=54.35 E-value=10 Score=17.23 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=46.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHH-HHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 3667738889999999998729989998-5979999999-8489989998613688770689999984336899717873
Q T0634 5 KILIIDQQDFSRIELKNFLDSEYLVIES-KNEKEALEQI-DHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~~~~~v~~a-~~~~eal~~~-~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
.+++||.++.....+ .+.++.++.. .+..+.+... .-...+++++-..- ...-..+|..+|+. .++++|+..
T Consensus 65 ~vvvID~d~~~~~~l---~~~g~~~i~gD~~d~~~l~~a~~~~~a~~vv~~~~~-~~~n~~~~~~~r~~--~~~~~Iiar 138 (183)
T 3c85_A 65 ISLGIEIREEAAQQH---RSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH-HQGNQTALEQLQRR--NYKGQIAAI 138 (183)
T ss_dssp CEEEEESCHHHHHHH---HHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS-HHHHHHHHHHHHHT--TCCSEEEEE
T ss_pred EEEEEECCHHHHHHH---HCCCCEEEECCCCCHHHHHHHHCCCCCCEEEECCCC-HHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 599993878999986---035613898768999999976440657499982693-58999999999997--898579999
Q ss_pred ECCCCHHHHHHHHHCCCCEEE
Q ss_conf 167878899999966996486
Q T0634 83 FSSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl 103 (140)
+. +.+......++||+..+
T Consensus 139 a~--~~~~~~~L~~~Gad~Vv 157 (183)
T 3c85_A 139 AE--YPDQLEGLLESGVDAAF 157 (183)
T ss_dssp ES--SHHHHHHHHHHTCSEEE
T ss_pred EC--CHHHHHHHHHCCCCEEE
T ss_conf 77--98999999986999999
No 170
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=54.06 E-value=10 Score=17.20 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=42.4
Q ss_pred CEEEEECCCHHHHHHHHHHHH-CCC---EEE-EECCHHHHHHHHHHCCCCEEEEECCCCCC-CCHHHHH
Q ss_conf 636677388899999999987-299---899-98597999999984899899986136887-7068999
Q T0634 4 KKILIIDQQDFSRIELKNFLD-SEY---LVI-ESKNEKEALEQIDHHHPDLVILDMDIIGE-NSPNLCL 66 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~-~~~---~v~-~a~~~~eal~~~~~~~pdlii~D~~lp~~-dG~~~~~ 66 (140)
-+|.-+|-++......+..++ .|+ .+. ...++.+.+..+....+|+|++|..-+.. +-++.+.
T Consensus 82 G~l~tID~~~e~~~~Ar~~~~~ag~~~~ri~~i~gda~e~L~~l~~~~fDlIfiD~~k~~y~~~~~~~~ 150 (221)
T 3dr5_A 82 TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMDLKALVDAAW 150 (221)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCTTTHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 889999778899999999999759976314899676899999724367778998287788899999999
No 171
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H
Probab=53.70 E-value=11 Score=17.17 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=47.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH----HCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9986366773888999999999872998999859799999998----489989998613688770689999984336899
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDSEYLVIESKNEKEALEQID----HHHPDLVILDMDIIGENSPNLCLKLKRSKGLKN 76 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~~~~v~~a~~~~eal~~~~----~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~ 76 (140)
|.|.||-++-|.++ ...+.=.|..+..+.+.+++.+.++ +..+.+|+++-.+-..-.-. ....+.+ ..
T Consensus 1 m~~mkIaVIGd~d~----v~GFrL~Gi~~~~v~~~ee~~~~l~~l~~~~d~gII~ite~~~~~i~~~-i~~~~~~---~~ 72 (109)
T 2d00_A 1 MVPVRMAVIADPET----AQGFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPDPERA-VERLMRG---RD 72 (109)
T ss_dssp CCCCCEEEEECHHH----HHHHHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHH-HHHHTTC---CC
T ss_pred CCCEEEEEECCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHH-HHHHHHC---CC
T ss_conf 97269999836888----7887640413575799899999999997088814999728998661899-9999846---99
Q ss_pred CCEEEE
Q ss_conf 717873
Q T0634 77 VPLILL 82 (140)
Q Consensus 77 iPiI~l 82 (140)
.|+|+.
T Consensus 73 ~P~Ii~ 78 (109)
T 2d00_A 73 LPVLLP 78 (109)
T ss_dssp CCEEEE
T ss_pred CCEEEE
T ss_conf 988999
No 172
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=53.67 E-value=11 Score=17.16 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=63.0
Q ss_pred EEEEEC----CCHHHHHHHHHHHHCC-CEEEE--ECCHHHHHHHHHHCCCCEEEEEC--------------CCCCCCCHH
Q ss_conf 366773----8889999999998729-98999--85979999999848998999861--------------368877068
Q T0634 5 KILIID----QQDFSRIELKNFLDSE-YLVIE--SKNEKEALEQIDHHHPDLVILDM--------------DIIGENSPN 63 (140)
Q Consensus 5 rILivD----D~~~~r~~l~~~L~~~-~~v~~--a~~~~eal~~~~~~~pdlii~D~--------------~lp~~dG~~ 63 (140)
.+++|| .+......++.+.... -.|+. +.+.+.+..++. ...|.|.+.+ ..|..+.+.
T Consensus 158 d~ivID~a~g~s~~v~~~ik~ik~~~~v~VIaGNV~T~e~a~~L~~-aGaD~VkVGiG~Gs~CtTr~~tGvg~Pq~sai~ 236 (400)
T 3ffs_A 158 DVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE-NGADGIKVGIGPGSICTTRIVAGVGVPQITAIE 236 (400)
T ss_dssp SEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHH-TTCSEEEECC---------CCSCBCCCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 8899840566304688999998863798689951378999999998-399703540114744455421476723789999
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 99999843368997178731678788999999669964865
Q T0634 64 LCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 64 ~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
.|...+.. ..+|||.=-+.....+..+|+.+||+....
T Consensus 237 ~~a~~~~~---~~v~IIADGGi~~sGDi~KAla~GAd~VMl 274 (400)
T 3ffs_A 237 KCSSVASK---FGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHTT---TTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHH---CCCCEEECCCCCCCCHHHHHHHCCCCHHHH
T ss_conf 99999976---599789448868753799999718735343
No 173
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomerase; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=53.51 E-value=11 Score=17.15 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=23.9
Q ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCEEEEE
Q ss_conf 863667738889999999998-729989998
Q T0634 3 LKKILIIDQQDFSRIELKNFL-DSEYLVIES 32 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L-~~~~~v~~a 32 (140)
|+||||.--.=.+...+...| ++||.|...
T Consensus 1 M~KILVTG~tGfIG~~l~~~Ll~~g~~V~~~ 31 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVF 31 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 9889991887489999999999783989999
No 174
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=53.47 E-value=11 Score=17.14 Aligned_cols=93 Identities=10% Similarity=0.141 Sum_probs=54.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 63667738889999999998729989998-59799999998489989998613688770689999984336899717873
Q T0634 4 KKILIIDQQDFSRIELKNFLDSEYLVIES-KNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~~~~v~~a-~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
..++++|.++..... +.+.++.++.. .+-.+.|+.+.-...+.+|+...- +..-...+..+|+. .+..+|+..
T Consensus 31 ~~v~vId~d~~~~~~---~~~~~~~~~~gD~~~~~~L~~a~i~~a~~vii~~~~-d~~n~~~~~~~~~~--~~~~~iia~ 104 (140)
T 3fwz_A 31 IPLVVIETSRTRVDE---LRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPN-GYEAGEIVASARAK--NPDIEIIAR 104 (140)
T ss_dssp CCEEEEESCHHHHHH---HHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSC-HHHHHHHHHHHHHH--CSSSEEEEE
T ss_pred CCEEEEECCHHHHHH---HHHCCCEEEECCCCCHHHHHHCCCCCCCEEEECCCC-HHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 988999898899999---996298389727889999950382418899987898-58999999999997--899849999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 1678788999999669964865
Q T0634 83 FSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
+ .+.+......++|++..+.
T Consensus 105 ~--~~~~~~~~l~~~Gad~vv~ 124 (140)
T 3fwz_A 105 A--HYDDEVAYITERGANQVVM 124 (140)
T ss_dssp E--SSHHHHHHHHHTTCSEEEE
T ss_pred E--CCHHHHHHHHHCCCCEEEC
T ss_conf 8--9999999999779999998
No 175
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=53.36 E-value=11 Score=17.13 Aligned_cols=56 Identities=11% Similarity=0.177 Sum_probs=39.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEECCH--------HHHHHHHHHCCCCEEEEECCC
Q ss_conf 99863667738889999999998-729989998597--------999999984899899986136
Q T0634 1 MSLKKILIIDQQDFSRIELKNFL-DSEYLVIESKNE--------KEALEQIDHHHPDLVILDMDI 56 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L-~~~~~v~~a~~~--------~eal~~~~~~~pdlii~D~~l 56 (140)
|+-+||||.--.=.+-..+...| +.|+.+....+. ...-..+....+|.|+.-...
T Consensus 1 m~~krVLVtGatG~IG~~l~~~L~~~g~~v~~~~~~~~~d~~d~~~~~~~~~~~~~d~Vi~~aa~ 65 (321)
T 1e6u_A 1 MAKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAK 65 (321)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHCCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99885999879988999999999978698999667134143589999999855699889988751
No 176
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=53.24 E-value=11 Score=17.12 Aligned_cols=66 Identities=23% Similarity=0.424 Sum_probs=39.8
Q ss_pred HHHHHHCCCCEEEEECCCCCC-CCHHHHHHHHHCCCCCCCCEEEEECCCCHH----HHHHHHHCCCCEEEE
Q ss_conf 999984899899986136887-706899999843368997178731678788----999999669964865
Q T0634 39 LEQIDHHHPDLVILDMDIIGE-NSPNLCLKLKRSKGLKNVPLILLFSSEHKE----AIVNGLHSGADDYLT 104 (140)
Q Consensus 39 l~~~~~~~pdlii~D~~lp~~-dG~~~~~~ir~~~~~~~iPiI~lta~~~~~----~~~~a~~~Ga~dyl~ 104 (140)
...+.+..+|++=+....... .--+.+...++......+|+|++++-...+ ....|+++||.+|+.
T Consensus 183 ~r~~~e~g~Di~K~e~P~~~~~~~~~~~~~~~~~~~~~~~p~vvLsgG~~~~~f~~~l~~A~~aGa~G~~~ 253 (304)
T 1to3_A 183 AKELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRVAMEAGASGFLA 253 (304)
T ss_dssp HHHHTTSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99876439769994078760456678999999987258996899928989899999999999679939985
No 177
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=53.11 E-value=11 Score=17.11 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=50.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 3667738889999999998729989998-597999999984899899986136887706899999843368997178731
Q T0634 5 KILIIDQQDFSRIELKNFLDSEYLVIES-KNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~~~~~v~~a-~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lt 83 (140)
++.+||.++..... +.+.++.+... .+..+.|..+.-...+.||+...= +..-..+|..+|+.+ ..++|..+
T Consensus 31 ~vviid~d~~~~~~---~~~~~~~v~~gd~~d~~~L~~a~i~~a~~vi~~~~~-d~~n~~~~~~~~~~~---~~~iia~~ 103 (141)
T 3llv_A 31 KVLAVDKSKEKIEL---LEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD-DEFNLKILKALRSVS---DVYAIVRV 103 (141)
T ss_dssp CEEEEESCHHHHHH---HHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSC-HHHHHHHHHHHHHHC---CCCEEEEE
T ss_pred CEEEEECHHHHHHH---HHCCCCEEEEECCCCHHHHHHHHHHHCCEEEEEECC-CHHHHHHHHHHHHCC---CCEEEEEE
T ss_conf 38997433889999---870783799944543567765557526899998388-589999999999769---98199998
Q ss_pred CCCCHHHHHHHHHCCCCEEE
Q ss_conf 67878899999966996486
Q T0634 84 SSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 84 a~~~~~~~~~a~~~Ga~dyl 103 (140)
. +.+.......+|++-.+
T Consensus 104 ~--~~~~~~~l~~~Ga~~vv 121 (141)
T 3llv_A 104 S--SPKKKEEFEEAGANLVV 121 (141)
T ss_dssp S--CGGGHHHHHHTTCSEEE
T ss_pred C--CHHHHHHHHHCCCCEEE
T ss_conf 8--98899999977989999
No 178
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=53.04 E-value=11 Score=17.10 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=25.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
Q ss_conf 998636677388899999999987299899985979999999
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDSEYLVIESKNEKEALEQI 42 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~~~~v~~a~~~~eal~~~ 42 (140)
|+|+||.|+--=..=...-..+.+.|+.|....--.+-++.+
T Consensus 13 ~~m~KI~ViGaG~~G~~~a~~La~~G~~V~~~d~~~~~v~~i 54 (366)
T 1evy_A 13 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLV 54 (366)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 265779998888999999999997899699998999999999
No 179
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=52.97 E-value=11 Score=17.09 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=31.0
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 999998489989998613688770---68999998433689971787316
Q T0634 38 ALEQIDHHHPDLVILDMDIIGENS---PNLCLKLKRSKGLKNVPLILLFS 84 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~dG---~~~~~~ir~~~~~~~iPiI~lta 84 (140)
|++..--..|+++|+|--.-+.|. .++...|++......+.+|++|-
T Consensus 155 alARaL~~~P~lLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtH 204 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204 (355)
T ss_dssp HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99876523566367648765489999999999999999841999999888
No 180
>2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=52.72 E-value=2.9 Score=20.66 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=37.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEC---CHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHHCCCCCCC
Q ss_conf 86366773888999999999872-99899985---9799999998489989998613688-7706899999843368997
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS-EYLVIESK---NEKEALEQIDHHHPDLVILDMDIIG-ENSPNLCLKLKRSKGLKNV 77 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~---~~~eal~~~~~~~pdlii~D~~lp~-~dG~~~~~~ir~~~~~~~i 77 (140)
|.||+|||--..+-..+...|+. |..+.... +..+. ..+|-||+-=.-+. .+.......+.+.-....+
T Consensus 13 m~ki~iID~g~~~~~~i~~~L~~lG~~~~Iip~~~~~~~l------~~~d~IIl~GG~~~~~~~~~~~~~l~~~i~~~~~ 86 (212)
T 2a9v_A 13 MLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSEL------DGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNY 86 (212)
T ss_dssp CCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGG------TTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCS
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHH------HCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 4579999997678999999999789848999697999998------4689079835765542033212456777651583
Q ss_pred CEEEE
Q ss_conf 17873
Q T0634 78 PLILL 82 (140)
Q Consensus 78 PiI~l 82 (140)
||+-+
T Consensus 87 PiLGI 91 (212)
T 2a9v_A 87 PILGI 91 (212)
T ss_dssp CEEEE
T ss_pred EEEEE
T ss_conf 28998
No 181
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=52.33 E-value=11 Score=17.03 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=46.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC--C-C---EE-EEECCHHHHHHHHHHCCCCEEEEECCCCCCC-----CHHHHHHHHH
Q ss_conf 86366773888999999999872--9-9---89-9985979999999848998999861368877-----0689999984
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS--E-Y---LV-IESKNEKEALEQIDHHHPDLVILDMDIIGEN-----SPNLCLKLKR 70 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~--~-~---~v-~~a~~~~eal~~~~~~~pdlii~D~~lp~~d-----G~~~~~~ir~ 70 (140)
..+|-+||=|+..-.+.+.++.. + + .+ +...||.+.+.. .+..+|+||+|..-|... ..++.+.+++
T Consensus 99 ~~~v~~VEiD~~Vi~~a~~~~~~~~~~~~dprv~i~~~Da~~~l~~-~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~ 177 (275)
T 1iy9_A 99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAK 177 (275)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHCHHHCCCCCCCCCEEEECHHHHHHHC-CCCCCCEEEEECCCCCCCCHHHCCHHHHHHHHH
T ss_conf 5369999648899999998581212532488736995738886433-588765899928998774310078999999998
Q ss_pred C
Q ss_conf 3
Q T0634 71 S 71 (140)
Q Consensus 71 ~ 71 (140)
.
T Consensus 178 ~ 178 (275)
T 1iy9_A 178 A 178 (275)
T ss_dssp H
T ss_pred H
T ss_conf 7
No 182
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=51.69 E-value=9.5 Score=17.46 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=31.5
Q ss_pred HHHHHHHCCCCEEEEECCCCCCC---CHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 99999848998999861368877---068999998433689971787316
Q T0634 38 ALEQIDHHHPDLVILDMDIIGEN---SPNLCLKLKRSKGLKNVPLILLFS 84 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~d---G~~~~~~ir~~~~~~~iPiI~lta 84 (140)
+++..--..|+++++|--..++| ..++...|++......+.||++|-
T Consensus 136 aiAral~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~~~tii~vTH 185 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 99988743998688459733289889999999999999972996999969
No 183
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid, csgid, Mg-bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Probab=51.58 E-value=11 Score=16.96 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=45.7
Q ss_pred CCCCEEEEECCCHHHHHHHHH--HHHCCCEEEEE------CCHHHHHHHHHHCCC-CEEEEECCCCCCC-----------
Q ss_conf 998636677388899999999--98729989998------597999999984899-8999861368877-----------
Q T0634 1 MSLKKILIIDQQDFSRIELKN--FLDSEYLVIES------KNEKEALEQIDHHHP-DLVILDMDIIGEN----------- 60 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~--~L~~~~~v~~a------~~~~eal~~~~~~~p-dlii~D~~lp~~d----------- 60 (140)
|+.++|-+.=|-......++- .+..+-.+... ..|.+.+..+.+..| -.+++|+.+-+..
T Consensus 4 M~k~~i~vAlD~~~~~~~~~~~~~~~~~id~ikvg~~l~~~~G~~~i~~l~~~~~~~~i~~D~k~~Di~~~~~~~~~~~g 83 (218)
T 3jr2_A 4 MTKPMIQIALDQTNLTDAVAVASNVASYVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAG 83 (218)
T ss_dssp -CCCEEEEEECCSSHHHHHHHHHHHGGGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEECEECHHHCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHC
T ss_conf 88985599955899999999999638975399955024231799999999985789839999862266147999999645
Q ss_pred ----------CHHHHHHHHHC-CCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECC
Q ss_conf ----------06899999843-36899717873167878899999966996486579
Q T0634 61 ----------SPNLCLKLKRS-KGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKP 106 (140)
Q Consensus 61 ----------G~~~~~~ir~~-~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP 106 (140)
|.+.++...+. ......+.+.+......+......+.|++..+.+.
T Consensus 84 ad~vtvh~~~~~~~i~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (218)
T 3jr2_A 84 ADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVDLGITQAIYHR 140 (218)
T ss_dssp CSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSCCHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHEHHHH
T ss_conf 988998353437789999998640387249995588999999988865800342634
No 184
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A
Probab=51.27 E-value=12 Score=16.93 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=9.5
Q ss_pred ECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 1678788999999669964865
Q T0634 83 FSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
+.....+...+..+.|++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~ 140 (221)
T 3exr_A 119 YGDWTYDQAQQWLDAGISQAIY 140 (221)
T ss_dssp CSSCCHHHHHHHHHTTCCEEEE
T ss_pred ECCCCHHHHHHHHHCCCHHEEE
T ss_conf 2377088999988455100320
No 185
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} PDB: 3l5m_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=51.00 E-value=12 Score=16.90 Aligned_cols=62 Identities=10% Similarity=0.171 Sum_probs=44.3
Q ss_pred HHHHHCCCCEEEEECCC--CC-----CC--CHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 99984899899986136--88-----77--06899999843368997178731678788999999669964865
Q T0634 40 EQIDHHHPDLVILDMDI--IG-----EN--SPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 40 ~~~~~~~pdlii~D~~l--p~-----~d--G~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
..+.+...|++-+.... |. .. -..+++.||+.- .+|||...+..+.+...++++.|..|++.
T Consensus 253 ~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~---~~Pvi~~G~i~~~~~ae~~l~~g~~D~V~ 323 (363)
T 3l5l_A 253 RRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREA---KLPVTSAWGFGTPQLAEAALQANQLDLVS 323 (363)
T ss_dssp HHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---TCCEEECSSTTSHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCCCHH
T ss_conf 999860977799854721267444457320178999999865---94189977869999999999879941427
No 186
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structural genomics; 2.00A {Ralstonia solanacearum MOLK2}
Probab=50.93 E-value=12 Score=16.89 Aligned_cols=44 Identities=14% Similarity=0.072 Sum_probs=27.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC
Q ss_conf 998636677388899999999987299899985979999999848
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDSEYLVIESKNEKEALEQIDHH 45 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~~~~v~~a~~~~eal~~~~~~ 45 (140)
|+|+||+|+---..=..+-..+.+.|+.|....-+.. .+.++++
T Consensus 1 ~~~~KI~IiGaGaiG~~~a~~L~~~G~~Vtlv~r~~~-~~~i~~~ 44 (335)
T 3ghy_A 1 MSLTRICIVGAGAVGGYLGARLALAGEAINVLARGAT-LQALQTA 44 (335)
T ss_dssp -CCCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHH-HHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEHHH-HHHHHHC
T ss_conf 9988899988769999999999968990899974899-9999987
No 187
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A*
Probab=50.29 E-value=12 Score=16.83 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=25.5
Q ss_pred CCCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEC
Q ss_conf 998636677388899999999-987299899985
Q T0634 1 MSLKKILIIDQQDFSRIELKN-FLDSEYLVIESK 33 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~-~L~~~~~v~~a~ 33 (140)
||-|||||.--.=.+-..+.. +++.||+|....
T Consensus 1 ~~~KkVlITGatG~iG~~l~~~Ll~~g~~V~~~~ 34 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGAD 34 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9929999988998899999999997849899998
No 188
>3kts_A Glycerol uptake operon antiterminator regulatory protein; structural genomics, PSI-2, protein structure initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=49.92 E-value=12 Score=16.79 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=44.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEC-CCCHHHHHHHHHCCCCEEEE
Q ss_conf 9999999848998999861368877068999998433689971787316-78788999999669964865
Q T0634 36 KEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFS-SEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 36 ~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta-~~~~~~~~~a~~~Ga~dyl~ 104 (140)
+.+++.+++..||.|= -||+.= ...++.+++.- ++|||. .| -.+.++..+|+++||...=+
T Consensus 117 ~~~~~~i~~~~PD~VE---iLPG~~-p~~I~~i~~~~---~~PiIA-GGLI~~kedV~~aL~aGA~aVST 178 (192)
T 3kts_A 117 NKGVALIQKVQPDCIE---LLPGII-PEQVQKMTQKL---HIPVIA-GGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHHCCSEEE---EECTTC-HHHHHHHHHHH---CCCEEE-ESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHHHCCCCEEE---ECCHHH-HHHHHHHHHHC---CCCEEE-ECCCCCHHHHHHHHHCCCEEEEC
T ss_conf 9999998547989999---886678-99999999746---999997-66728899999999859979987
No 189
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=48.46 E-value=13 Score=16.65 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=56.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEE-CCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9986366773888999999999872-9989998-5979999999848998999861368877068999998433689971
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIES-KNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a-~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
|+ +||||+--=..-+..+..+.+. ++.++.+ .+...|-+..+......+-+|+ .|--.+.+.++.. ++-
T Consensus 22 m~-kkIlvlGaG~vG~~~~~~L~~~~~~~i~v~~r~~~~a~~~~~~~~~~~~~~Dv----~d~~~l~~~i~~~----DiV 92 (467)
T 2axq_A 22 MG-KNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDV----TDDSALDKVLADN----DVV 92 (467)
T ss_dssp -C-EEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCT----TCHHHHHHHHHTS----SEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCEEEEEC----CCHHHHHHHHCCC----CEE
T ss_conf 78-81999898889999999998289934999969999999986026983699847----9989999986189----999
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 78731678788999999669964865798889
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRN 110 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~ 110 (140)
|.++...-.......|+++|++-+-...+.++
T Consensus 93 I~~~p~~~~~~i~~~~i~~g~~~vd~~~~~~~ 124 (467)
T 2axq_A 93 ISLIPYTFHPNVVKSAIRTKTDVVTSSYISPA 124 (467)
T ss_dssp EECSCGGGHHHHHHHHHHHTCEEEECSCCCHH
T ss_pred EECCCHHHCHHHHHHHHHCCCCEECCHHCCCH
T ss_conf 99988133699999999749967504000101
No 190
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=48.12 E-value=13 Score=16.62 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCHHHHHHHH-HHHHCCCEEEEE
Q ss_conf 99863667738889999999-998729989998
Q T0634 1 MSLKKILIIDQQDFSRIELK-NFLDSEYLVIES 32 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~-~~L~~~~~v~~a 32 (140)
|+ +||||.--.=.+...+. .+|+.||.|+..
T Consensus 1 M~-kkILVTGatGfIGs~lv~~Ll~~G~~V~~~ 32 (348)
T 1ek6_A 1 MA-EKVLVTGGAGYIGSHTVLELLEAGYLPVVI 32 (348)
T ss_dssp CC-SEEEEETTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred CC-CCEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 99-858998999789999999999786979999
No 191
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=48.00 E-value=13 Score=16.61 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=31.5
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 999998489989998613688770---6899999843368997178731
Q T0634 38 ALEQIDHHHPDLVILDMDIIGENS---PNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~dG---~~~~~~ir~~~~~~~iPiI~lt 83 (140)
|++..--..|+++|+|--+-++|- .++...|++......+.+|++|
T Consensus 149 ~iAral~~~P~illlDEP~s~LD~~~~~~i~~~l~~l~~~~~~t~i~vt 197 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVT 197 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 9999996699989985876557999999999999999997199999990
No 192
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=47.54 E-value=7.8 Score=17.97 Aligned_cols=91 Identities=12% Similarity=0.197 Sum_probs=44.6
Q ss_pred CCEEEEECCC----HHHHHHHHHHHHCCCEEEEEC------CHHHHHHHHHH--CCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 8636677388----899999999987299899985------97999999984--89989998613688770689999984
Q T0634 3 LKKILIIDQQ----DFSRIELKNFLDSEYLVIESK------NEKEALEQIDH--HHPDLVILDMDIIGENSPNLCLKLKR 70 (140)
Q Consensus 3 m~rILivDD~----~~~r~~l~~~L~~~~~v~~a~------~~~eal~~~~~--~~pdlii~D~~lp~~dG~~~~~~ir~ 70 (140)
.|+|-||--+ ..-...+..+++.||.++... .|..+..-+.+ ..||+++ +-.|.....++++.+-+
T Consensus 14 ~KsIAVVGaS~~~~k~g~~v~~~L~~~gy~V~pVnP~~~~I~G~~~y~sl~dip~~iDlvv--i~vp~~~v~~vl~e~~~ 91 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIV--FVVPPKVGLQVAKEAVE 91 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEE--ECSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE--EECCHHHHHHHHHHHHH
T ss_conf 5779998327999981999999999789979997155431479735556411343320689--98078999999999985
Q ss_pred CCCCCCCCE-EEEECCCCHHHHHHHHHCCC
Q ss_conf 336899717-87316787889999996699
Q T0634 71 SKGLKNVPL-ILLFSSEHKEAIVNGLHSGA 99 (140)
Q Consensus 71 ~~~~~~iPi-I~lta~~~~~~~~~a~~~Ga 99 (140)
. .++. ++-++..+.+....+.++|.
T Consensus 92 ~----g~k~v~~q~G~~~~~~~~~a~~~Gi 117 (138)
T 1y81_A 92 A----GFKKLWFQPGAESEEIRRFLEKAGV 117 (138)
T ss_dssp T----TCCEEEECTTSCCHHHHHHHHHHTC
T ss_pred C----CCCEEEEECCCCCHHHHHHHHHCCC
T ss_conf 6----9988985066018999999998499
No 193
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=47.33 E-value=13 Score=16.54 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=31.7
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 999998489989998613688770---68999998433689971787316
Q T0634 38 ALEQIDHHHPDLVILDMDIIGENS---PNLCLKLKRSKGLKNVPLILLFS 84 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~dG---~~~~~~ir~~~~~~~iPiI~lta 84 (140)
|++..--..|+++++|--+...|. .++...+++......+++|++|-
T Consensus 151 alARaL~~~P~~lllDEP~s~LD~~~r~~l~~~l~~~~~~~g~t~i~vTH 200 (372)
T 1v43_A 151 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200 (372)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99887523998113058864339999999999999989870954999958
No 194
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A*
Probab=47.31 E-value=13 Score=16.54 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=27.6
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 6899999843368997178731678788999999669964865
Q T0634 62 PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 62 ~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
+++++.+++... ..+|||-.-+-.+.++..+.+.+||+-.=.
T Consensus 332 l~~v~~~~~~~~-~~ipIIGvGGI~s~~Da~e~i~AGAslVQi 373 (415)
T 3i65_A 332 TKFICEMYNYTN-KQIPIIASGGIFSGLDALEKIEAGASVCQL 373 (415)
T ss_dssp HHHHHHHHHHTT-TCSCEEECSSCCSHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHCCCCHHHH
T ss_conf 999999999828-998399978989999999999849879987
No 195
>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding cassette, transport protein; HET: ADP; 2.30A {Escherichia coli K12} SCOP: b.40.6.3 c.37.1.12 PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 2r6g_A* 1q1b_A
Probab=47.16 E-value=13 Score=16.53 Aligned_cols=55 Identities=11% Similarity=0.159 Sum_probs=35.3
Q ss_pred EEECCHHH---HHHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 99859799---999998489989998613688770---68999998433689971787316
Q T0634 30 IESKNEKE---ALEQIDHHHPDLVILDMDIIGENS---PNLCLKLKRSKGLKNVPLILLFS 84 (140)
Q Consensus 30 ~~a~~~~e---al~~~~~~~pdlii~D~~lp~~dG---~~~~~~ir~~~~~~~iPiI~lta 84 (140)
..-+-|+. |++..--..|+++++|--+.+.|- .++...|++.....++.+|++|-
T Consensus 132 ~~LSGGq~QRValARaL~~~P~vlllDEP~s~LD~~~r~~i~~~l~~l~~~~g~t~i~vTH 192 (381)
T 2awn_A 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192 (381)
T ss_dssp -----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 3699999999999999840998899669865469899999999999988861976999936
No 196
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=47.11 E-value=13 Score=16.52 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=31.2
Q ss_pred HHHHHHHCCCCEEEEECCCCCCC---CHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 99999848998999861368877---068999998433689971787316
Q T0634 38 ALEQIDHHHPDLVILDMDIIGEN---SPNLCLKLKRSKGLKNVPLILLFS 84 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~d---G~~~~~~ir~~~~~~~iPiI~lta 84 (140)
|++..--..|+++|+|--..+.| -.++...|++......+.+|++|-
T Consensus 150 aiARaL~~~P~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~t~i~vTH 199 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEES
T ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 99875434898899758864469999999999999999840999999888
No 197
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis V583} SCOP: c.66.1.46
Probab=46.86 E-value=14 Score=16.50 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=52.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CC---EEEEECCHHHHHHHHHH--CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 6366773888999999999872-99---89998597999999984--899899986136887706899999843368997
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EY---LVIESKNEKEALEQIDH--HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNV 77 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~---~v~~a~~~~eal~~~~~--~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~i 77 (140)
.+|..||-++.....++.-++. +. .-+...|....++.+.. .++|+|++|---...+..+++..|.+..-...-
T Consensus 68 ~~v~~Ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~l~~~~lL~~~ 147 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNE 147 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEECCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 62341662466888988754201245641788631788887644116778759978987640799999999987983899
Q ss_pred CEEEE
Q ss_conf 17873
Q T0634 78 PLILL 82 (140)
Q Consensus 78 PiI~l 82 (140)
-+|++
T Consensus 148 giIii 152 (187)
T 2fhp_A 148 AVIVC 152 (187)
T ss_dssp EEEEE
T ss_pred CEEEE
T ss_conf 09999
No 198
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=46.68 E-value=14 Score=16.48 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=23.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEE
Q ss_conf 99863667738889999999998-729989998
Q T0634 1 MSLKKILIIDQQDFSRIELKNFL-DSEYLVIES 32 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L-~~~~~v~~a 32 (140)
|+| ||||.--+=.+...+...| +.|+.|...
T Consensus 1 m~M-KILItG~tGfIG~~l~~~L~~~g~~v~~~ 32 (311)
T 3m2p_A 1 MSL-KIAVTGGTGFLGQYVVESIKNDGNTPIIL 32 (311)
T ss_dssp -CC-EEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCC-EEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 985-49997999789999999999786989999
No 199
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=45.96 E-value=14 Score=16.41 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=14.1
Q ss_pred HHHHHHHHHHCCCEEEEE----CCHHHHHHHHHHCCCC
Q ss_conf 999999998729989998----5979999999848998
Q T0634 15 SRIELKNFLDSEYLVIES----KNEKEALEQIDHHHPD 48 (140)
Q Consensus 15 ~r~~l~~~L~~~~~v~~a----~~~~eal~~~~~~~pd 48 (140)
.....+.+.+.|..+.+. .++.++++.+.+..|+
T Consensus 21 a~~~a~al~~~Gi~~iEitl~t~~a~~~i~~l~~~~~~ 58 (212)
T 2v82_A 21 ALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGD 58 (212)
T ss_dssp HHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 99999999986999899958993499999999996787
No 200
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJM; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=45.92 E-value=14 Score=16.41 Aligned_cols=64 Identities=9% Similarity=0.056 Sum_probs=45.3
Q ss_pred HHHHHHHCCCCEEEEECC--------CCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 999998489989998613--------6887706899999843368997178731678788999999669964865
Q T0634 38 ALEQIDHHHPDLVILDMD--------IIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~--------lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
....+.+...|++-+... .+..-...+++.+|+.. .+|++..-...+++...++++.|..|++.
T Consensus 234 ~~~~l~~~g~d~~~~s~~~~~~~~~~~~~g~~~~~~~~ik~~~---~~pvi~~G~i~~~~~ae~~l~~g~~D~V~ 305 (338)
T 1z41_A 234 FAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA---DMATGAVGMITDGSMAEEILQNGRADLIF 305 (338)
T ss_dssp HHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---CCEEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCCCCHHHHHHHHHCCCCCCHH
T ss_conf 9999998498631122123345555578851168999999866---94099968939999999999879955427
No 201
>2pt6_A Spermidine synthase; transferase, structural genomics consortium, SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum 3D7} PDB: 2pss_A* 2pt9_A*
Probab=45.84 E-value=14 Score=16.40 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=48.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC---CC---EE-EEECCHHHHHHHHHHCCCCEEEEECCCCCCC-----CHHHHHHHHH
Q ss_conf 86366773888999999999872---99---89-9985979999999848998999861368877-----0689999984
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS---EY---LV-IESKNEKEALEQIDHHHPDLVILDMDIIGEN-----SPNLCLKLKR 70 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~---~~---~v-~~a~~~~eal~~~~~~~pdlii~D~~lp~~d-----G~~~~~~ir~ 70 (140)
..+|-+||=|+..-...+.++.. .+ .+ +...||.+.++.. +..+|+||+|..-|... ..++.+.+++
T Consensus 140 ~~~v~~VEID~~Vi~~ak~~f~~~~~~~~dprv~i~~~Da~~~l~~~-~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~ 218 (321)
T 2pt6_A 140 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYN 218 (321)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHCCHHHHHHHHH
T ss_conf 65337860489999999986465134225986278755699987507-77677799968998875155445999999999
Q ss_pred C
Q ss_conf 3
Q T0634 71 S 71 (140)
Q Consensus 71 ~ 71 (140)
.
T Consensus 219 ~ 219 (321)
T 2pt6_A 219 A 219 (321)
T ss_dssp H
T ss_pred H
T ss_conf 7
No 202
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=45.56 E-value=14 Score=16.37 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=26.9
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 6899999843368997178731678788999999669964865
Q T0634 62 PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 62 ~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
++.++.+++.- ...+|||.-.+-.+.++..+++.+||+..-.
T Consensus 276 l~~l~~i~~~v-~~~ipvi~~GGI~~~~Dv~k~L~lGA~aV~v 317 (336)
T 1f76_A 276 TEIIRRLSLEL-NGRLPIIGVGGIDSVIAAREKIAAGASLVQI 317 (336)
T ss_dssp HHHHHHHHHHH-TTSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 99999999982-8995799989999999999999809999997
No 203
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=45.00 E-value=14 Score=16.32 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=42.7
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHH------HHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 989998613688770689999984336899717873167878899------99996699648657988899999999999
Q T0634 47 PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAI------VNGLHSGADDYLTKPFNRNDLLSRIEIHL 120 (140)
Q Consensus 47 pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~------~~a~~~Ga~dyl~KP~~~~eL~~~i~~~l 120 (140)
-|++++-. ..+.-|+-++..+.. .+|+|. |..+...+. ...+..+.++|+.+|.|.+.|..+|+.++
T Consensus 366 aDv~v~pS-~~E~fg~~~lEAma~-----G~PvIa-s~~gg~~E~i~dg~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l 438 (485)
T 1rzu_A 366 CDAIIIPS-RFEPCGLTQLYALRY-----GCIPVV-ARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp CSEEEECC-SCCSSCSHHHHHHHH-----TCEEEE-ESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred CCCCCCCC-CCCCCCHHHHHHHHC-----CCCEEE-CCCCCCCCEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 76444765-325677899999986-----998999-47998600353587542246787559978999999999999998
Q ss_pred HH
Q ss_conf 99
Q T0634 121 RT 122 (140)
Q Consensus 121 r~ 122 (140)
..
T Consensus 439 ~~ 440 (485)
T 1rzu_A 439 RY 440 (485)
T ss_dssp HH
T ss_pred HC
T ss_conf 37
No 204
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=44.93 E-value=14 Score=16.31 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=50.2
Q ss_pred CCCCE--EEEECCCHHHHHHHHHHHHC--CCEEEEEC--CHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCC
Q ss_conf 99863--66773888999999999872--99899985--97999999984899899986136887706899999843368
Q T0634 1 MSLKK--ILIIDQQDFSRIELKNFLDS--EYLVIESK--NEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGL 74 (140)
Q Consensus 1 m~m~r--ILivDD~~~~r~~l~~~L~~--~~~v~~a~--~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~ 74 (140)
|||.| |-||-=-..-+......+.. +..++.+. +.+++ .++. ++. ..++=...+-+.+.
T Consensus 1 msm~~irigiIG~G~~g~~~~~~~~~~~~~~~v~av~~~~~e~~---~~~~-~~~----------~~~~~~~ell~~~~- 65 (358)
T 3gdo_A 1 MSLDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV---KRDF-PDA----------EVVHELEEITNDPA- 65 (358)
T ss_dssp -CTTCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHH---HHHC-TTS----------EEESSTHHHHTCTT-
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHH---HHHC-CCC----------CEECCHHHHHCCCC-
T ss_conf 99887579999186999999999982389908999958899999---9767-998----------24499999956999-
Q ss_pred CCCCEEEEE-C-CCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHH
Q ss_conf 997178731-6-787889999996699648657988--899999999
Q T0634 75 KNVPLILLF-S-SEHKEAIVNGLHSGADDYLTKPFN--RNDLLSRIE 117 (140)
Q Consensus 75 ~~iPiI~lt-a-~~~~~~~~~a~~~Ga~dyl~KP~~--~~eL~~~i~ 117 (140)
.+ +++++ . ....+....|+++|..=|+.||+. .++....++
T Consensus 66 ~D--~V~I~tp~~~H~~~~~~al~~GkhV~~EKPla~~~~ea~~l~~ 110 (358)
T 3gdo_A 66 IE--LVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKR 110 (358)
T ss_dssp CC--EEEECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHH
T ss_pred CC--EEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 98--9999088478899999998659889852544312389999975
No 205
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=44.90 E-value=14 Score=16.31 Aligned_cols=90 Identities=11% Similarity=0.104 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHC--CCEEE------EECCHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 888999999999872--99899------9859799999998489989998613688-77068999998433689971787
Q T0634 11 QQDFSRIELKNFLDS--EYLVI------ESKNEKEALEQIDHHHPDLVILDMDIIG-ENSPNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 11 D~~~~r~~l~~~L~~--~~~v~------~a~~~~eal~~~~~~~pdlii~D~~lp~-~dG~~~~~~ir~~~~~~~iPiI~ 81 (140)
|.......++.+.+. +..++ ...|..++++.+.+..++=|++.=.-|. .+|++.++.+.+.. .-++||
T Consensus 98 dg~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILTSG~~~~a~~G~~~L~~l~~~a---~~~iIm 174 (256)
T 1twd_A 98 DGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSDALQGLSKIMELIAHR---DAPIIM 174 (256)
T ss_dssp TSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSSSTTTTHHHHHHHHTSS---SCCEEE
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC---CCCEEE
T ss_conf 88854999999999864467366112354088999999998669786862689885566799999999835---995899
Q ss_pred EECCCCHHHHHHHHHCCCCEEE
Q ss_conf 3167878899999966996486
Q T0634 82 LFSSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl 103 (140)
.-+--..+...+.++.|+..|=
T Consensus 175 ~GgGI~~~Ni~~l~~tG~~e~H 196 (256)
T 1twd_A 175 AGAGVRAENLHHFLDAGVLEVH 196 (256)
T ss_dssp EESSCCTTTHHHHHHHTCSEEE
T ss_pred EECCCCHHHHHHHHHCCCCEEE
T ss_conf 6267898999999977998899
No 206
>2g4r_A MOGA, molybdopterin biosynthesis MOG protein; anomalous substructure of MOGA, biosynthetic protein; 1.92A {Mycobacterium tuberculosis}
Probab=44.22 E-value=15 Score=16.24 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=34.0
Q ss_pred CCCCEE--EEECC-------CHHHHHHHHHHHHC-CCEE---EEECCHHHHHHHH-H--HCCCCEEEEECCC
Q ss_conf 998636--67738-------88999999999872-9989---9985979999999-8--4899899986136
Q T0634 1 MSLKKI--LIIDQ-------QDFSRIELKNFLDS-EYLV---IESKNEKEALEQI-D--HHHPDLVILDMDI 56 (140)
Q Consensus 1 m~m~rI--LivDD-------~~~~r~~l~~~L~~-~~~v---~~a~~~~eal~~~-~--~~~pdlii~D~~l 56 (140)
||++|. +.|-| .+.+...++..|+. |+.+ ..+.|-.+.+... . ....|+||+-=-+
T Consensus 1 ~~~~~a~iitvsd~~~~G~~~D~ngp~L~~~L~~~G~~v~~~~iv~D~~~~i~~~~~~~~~~~DlVittGG~ 72 (160)
T 2g4r_A 1 MSTRSARIVVVSSRAAAGVYTDDCGPIIAGWLEQHGFSSVQPQVVADGNPVGEALHDAVNAGVDVIITSGGT 72 (160)
T ss_dssp --CCCEEEEEECHHHHTTSSCCCHHHHHHHHHHHTTCCCCCCEEECSSHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 998779999955853048857852999999998779901146888985899999999986799999957851
No 207
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=44.08 E-value=15 Score=16.23 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=39.4
Q ss_pred HHHHHHHHHHCCC-CEEEEECCCCCC-CCH--HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHH-HCCCCEEEE
Q ss_conf 7999999984899-899986136887-706--899999843368997178731678788999999-669964865
Q T0634 35 EKEALEQIDHHHP-DLVILDMDIIGE-NSP--NLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGL-HSGADDYLT 104 (140)
Q Consensus 35 ~~eal~~~~~~~p-dlii~D~~lp~~-dG~--~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~-~~Ga~dyl~ 104 (140)
..+.+..+++... .+++.|+.--|+ .|+ ++++.+++. ..+|||+--+-+..++..+++ +.|++..+.
T Consensus 454 ~~~~i~~~~~~G~GEIllt~Id~DGt~~G~D~~li~~i~~~---~~iPvIasGG~g~~~di~~~l~~~~~~av~~ 525 (555)
T 1jvn_A 454 VWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDA---VKIPVIASSGAGVPEHFEEAFLKTRADACLG 525 (555)
T ss_dssp HHHHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHH---CSSCEEECSCCCSHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 99999999966998999973337788887699999999975---8989899779999999999998689859988
No 208
>1izc_A Macrophomate synthase intermolecular diels- alderase; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=43.99 E-value=15 Score=16.22 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=63.8
Q ss_pred HHHHHHHHHHC-CCEEE---EECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHH---HHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 99999999872-99899---9859799999998489989998613688770689---99998433689971787316787
Q T0634 15 SRIELKNFLDS-EYLVI---ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNL---CLKLKRSKGLKNVPLILLFSSEH 87 (140)
Q Consensus 15 ~r~~l~~~L~~-~~~v~---~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~---~~~ir~~~~~~~iPiI~lta~~~ 87 (140)
.|..|+..+.. +-.+. ..-......+.+....+|-|++|+.=-..|--++ ++.++...... ++.++=-...+
T Consensus 28 ~~~~l~~~~~~~~~~~~G~~~~~ps~~~ae~~a~~G~D~v~iD~EHg~~~~~~l~~~i~a~~~~~~~~-~~~iVRvp~~~ 106 (339)
T 1izc_A 28 LRQALKDAMADPSKTLMGVAHGIPSTFVTKVLAATKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGR-SLVIVRVPKHD 106 (339)
T ss_dssp HHHHHHHHHHCGGGCEEEEEECSCCHHHHHHHHHTCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTC-SEEEEECCTTC
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEECCCCC
T ss_conf 99999998755798489873158996999999769989999857889999999999999999847899-86188489888
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHH-HHHHHHH
Q ss_conf 889999996699648657988899-9999999
Q T0634 88 KEAIVNGLHSGADDYLTKPFNRND-LLSRIEI 118 (140)
Q Consensus 88 ~~~~~~a~~~Ga~dyl~KP~~~~e-L~~~i~~ 118 (140)
+....+++++||...+.-=++-.+ ....++.
T Consensus 107 ~~~i~~~LD~Ga~GIivP~V~s~eeA~~~V~a 138 (339)
T 1izc_A 107 EVSLSTALDAGAAGIVIPHVETVEEVREFVKE 138 (339)
T ss_dssp HHHHHHHHHHTCSEEEETTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 79999997179998997786999999999997
No 209
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=42.89 E-value=16 Score=16.12 Aligned_cols=81 Identities=10% Similarity=0.166 Sum_probs=46.3
Q ss_pred CCEEEEECCCHHH----HHHHHHHHHCCCEEEE-E--------------------------------CCHHHHHHHH---
Q ss_conf 8636677388899----9999999872998999-8--------------------------------5979999999---
Q T0634 3 LKKILIIDQQDFS----RIELKNFLDSEYLVIE-S--------------------------------KNEKEALEQI--- 42 (140)
Q Consensus 3 m~rILivDD~~~~----r~~l~~~L~~~~~v~~-a--------------------------------~~~~eal~~~--- 42 (140)
|+||||.-||=.. +.+.+.+.+.+ .|.. | .++.+|..+.
T Consensus 1 mp~ILltNDDGi~a~Gl~~L~~~l~~~g-~v~vvAP~~~~Sg~g~ait~~~~~~~~~~~~~~~~~v~GTPaDcv~~gl~~ 79 (251)
T 2phj_A 1 MPTFLLVNDDGYFSPGINALREALKSLG-RVVVVAPDRNLSGVGHSLTFTEPLKMRKIDTDFYTVIDGTPADCVHLGYRV 79 (251)
T ss_dssp -CEEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCCCSSCEEEEEEETTEEEETTCCHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCEEECCCCHHHEEEEECCC
T ss_conf 9989997179888788999999998579-999992688875134675788983248850342131279714613641142
Q ss_pred --HHCCCCEEEEECCCCCCCCHHH-----HHHHHHCCCCCCCCEEEEECC
Q ss_conf --8489989998613688770689-----999984336899717873167
Q T0634 43 --DHHHPDLVILDMDIIGENSPNL-----CLKLKRSKGLKNVPLILLFSS 85 (140)
Q Consensus 43 --~~~~pdlii~D~~lp~~dG~~~-----~~~ir~~~~~~~iPiI~lta~ 85 (140)
...+|||||..++...=-|.++ +..-++ .....+|-|.+|..
T Consensus 80 ~~~~~~PDLVvSGIN~G~N~G~~v~ySGTVgAA~E-a~~~GipsIA~S~~ 128 (251)
T 2phj_A 80 ILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAME-GRILGIPSIAFSAF 128 (251)
T ss_dssp TTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHH-HHHTTCCEEEEEEE
T ss_pred CCCCCCCCEEEECCCCCEECCCCCCCHHHHHHHHH-HHHCCCCEEEEECC
T ss_conf 25899998899479897747888355289999999-99729983899735
No 210
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=41.81 E-value=16 Score=16.01 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=53.7
Q ss_pred EEECCHHHHHHHHHHCCCCEEEEECCCCCC-------CCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 998597999999984899899986136887-------7068999998433689971787316787889999996699648
Q T0634 30 IESKNEKEALEQIDHHHPDLVILDMDIIGE-------NSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDY 102 (140)
Q Consensus 30 ~~a~~~~eal~~~~~~~pdlii~D~~lp~~-------dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dy 102 (140)
..+.+..++.+. .+..+|.+.+.--.|.. -|++.++.+.+.. .+|++.+-+- +.+...+++++||+.+
T Consensus 113 ~s~h~~~e~~~a-~~~g~DYi~~gpvf~T~sK~~~~~~g~~~l~~~~~~~---~~Pv~AiGGI-~~~ni~~~~~~Ga~gv 187 (215)
T 1xi3_A 113 ASVYSLEEALEA-EKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV---KIPVVAIGGI-NKDNAREVLKTGVDGI 187 (215)
T ss_dssp EEESSHHHHHHH-HHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC---SSCEEEESSC-CTTTHHHHHTTTCSEE
T ss_pred CCCCCHHHHHHH-HHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCC-CHHHHHHHHHHCCCEE
T ss_conf 454509999988-7459778986013225665555322268888888725---7881676689-9999999998199899
Q ss_pred EE-----CCCCHHHHHHHHHHHH
Q ss_conf 65-----7988899999999999
Q T0634 103 LT-----KPFNRNDLLSRIEIHL 120 (140)
Q Consensus 103 l~-----KP~~~~eL~~~i~~~l 120 (140)
-. +-=++..-...++..+
T Consensus 188 Av~saI~~~~dp~~~~~~l~~~i 210 (215)
T 1xi3_A 188 AVISAVMGAEDVRKATEELRKIV 210 (215)
T ss_dssp EESHHHHTSSSHHHHHHHHHHHH
T ss_pred EEHHHHHCCCCHHHHHHHHHHHH
T ss_conf 97399777999999999999999
No 211
>3mbj_A Putative phosphomethylpyrimidine kinase; structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=41.45 E-value=16 Score=15.98 Aligned_cols=77 Identities=8% Similarity=0.045 Sum_probs=40.4
Q ss_pred CCEEEEECCCHH-----HHHHHHHHHHCCCEEEEE------C-CH-------------HHHHHHHH--HCCCCEEEEECC
Q ss_conf 863667738889-----999999998729989998------5-97-------------99999998--489989998613
Q T0634 3 LKKILIIDQQDF-----SRIELKNFLDSEYLVIES------K-NE-------------KEALEQID--HHHPDLVILDMD 55 (140)
Q Consensus 3 m~rILivDD~~~-----~r~~l~~~L~~~~~v~~a------~-~~-------------~eal~~~~--~~~pdlii~D~~ 55 (140)
|+|||++-|... +...+..+-..|+.+..+ . +| .+.+..+. ..++|.|.+.+
T Consensus 7 ~k~vl~i~~~~~~G~~g~~a~i~vl~~lG~~~~~v~T~~~s~htg~~~~~~~~~~~~~~~~l~~~~~~~~~~daIk~G~- 85 (291)
T 3mbj_A 7 VKKIAAVHDLSGMGRVSLTVVIPILSSMGFQVCPLPTAVLSNHTQYPGFSFLDLTDEMPKIIAEWKKLEVQFDAIYTGY- 85 (291)
T ss_dssp SCEEEEECCEEEESSCTHHHHHHHHHHTTCEEEECCSEEEEECTTSSCCCEEECTTTHHHHHHHHHHHTCCCSEEEECC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEECC-
T ss_conf 7869999288998727999999999986983478536891467999984587594999999999996599979899898-
Q ss_pred CCCCCCHHHH-HHHHHCCCCCCCCEEE
Q ss_conf 6887706899-9998433689971787
Q T0634 56 IIGENSPNLC-LKLKRSKGLKNVPLIL 81 (140)
Q Consensus 56 lp~~dG~~~~-~~ir~~~~~~~iPiI~ 81 (140)
++..+-.+.+ +.+++. ..+++|+++
T Consensus 86 l~~~~~v~~i~~~l~~~-~~~~~~vV~ 111 (291)
T 3mbj_A 86 LGSPRQIQIVSDFIKDF-RQPDSLIVA 111 (291)
T ss_dssp CCSHHHHHHHHHHHHHH-CCTTCEEEE
T ss_pred CCCHHHHHHHHHHHHHH-CCCCCEEEE
T ss_conf 89999999999999984-489967971
No 212
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=41.41 E-value=16 Score=15.97 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=31.5
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 999998489989998613688770---68999998433689971787316
Q T0634 38 ALEQIDHHHPDLVILDMDIIGENS---PNLCLKLKRSKGLKNVPLILLFS 84 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~dG---~~~~~~ir~~~~~~~iPiI~lta 84 (140)
|++..--..|+++++|--+...|. .++...|++......+++|++|-
T Consensus 143 alARaL~~~P~llLlDEP~s~LD~~~r~~l~~~l~~l~~~~g~t~i~vTH 192 (362)
T 2it1_A 143 AIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTH 192 (362)
T ss_dssp HHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 99998602996798479855689789753588899999960999999979
No 213
>1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=41.03 E-value=17 Score=15.94 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=43.5
Q ss_pred EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 8999859799999998489989998613688770689999984336899717873167878899999966996486
Q T0634 28 LVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 28 ~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl 103 (140)
..+++.+-+++.+.+. ..+|.|.+| +|.-.+=-++.+.+|... +++ .|..|+.-+.+...+.-+.|+|-+-
T Consensus 196 i~vEv~~l~ea~~a~~-~g~d~I~LD-n~~p~~i~~~v~~l~~~~--~~v-~ieaSGGI~~~ni~~yA~~GVD~Is 266 (285)
T 1o4u_A 196 IEVEVENLEDALRAVE-AGADIVMLD-NLSPEEVKDISRRIKDIN--PNV-IVEVSGGITEENVSLYDFETVDVIS 266 (285)
T ss_dssp EEEEESSHHHHHHHHH-TTCSEEEEE-SCCHHHHHHHHHHHHHHC--TTS-EEEEEECCCTTTGGGGCCTTCCEEE
T ss_pred EEEEECHHHHHHHHHH-CCCCEEEEC-CCCHHHHHHHHHHHHHHC--CCE-EEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 7997333999999997-599899847-988677999999999758--978-9999799989999999865989998
No 214
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=40.96 E-value=17 Score=15.93 Aligned_cols=77 Identities=23% Similarity=0.179 Sum_probs=48.0
Q ss_pred CCCEEEEECCCH-----HHHHHHHHHHHC-CCE-E-EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCC
Q ss_conf 986366773888-----999999999872-998-9-99859799999998489989998613688770689999984336
Q T0634 2 SLKKILIIDQQD-----FSRIELKNFLDS-EYL-V-IESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKG 73 (140)
Q Consensus 2 ~m~rILivDD~~-----~~r~~l~~~L~~-~~~-v-~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~ 73 (140)
.|.|||+|=.+= ..+.-++..++. +.. + +...+-.++-. ....+|+|++...+++.- +.
T Consensus 17 ~m~KIlvvCgsGigTS~ml~~klk~~l~~~gi~~~~v~~~~~~~~~~--~~~~~DlIitt~~l~~~~-----------~~ 83 (110)
T 3czc_A 17 SMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKG--LASNYDIVVASNHLIHEL-----------DG 83 (110)
T ss_dssp -CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHH--HGGGCSEEEEETTTGGGT-----------TT
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHC--CCCCCEEEEECCHHHHHH-----------CC
T ss_conf 62289999999734999999999999987698368999703876545--778964999894334664-----------05
Q ss_pred CCCCCEEEEECCCCHHHH
Q ss_conf 899717873167878899
Q T0634 74 LKNVPLILLFSSEHKEAI 91 (140)
Q Consensus 74 ~~~iPiI~lta~~~~~~~ 91 (140)
...+|||.++..-+.++.
T Consensus 84 ~~~~~Vi~v~~~l~~~ei 101 (110)
T 3czc_A 84 RTNGKLIGLDNLMDDNEI 101 (110)
T ss_dssp SCSSEEEEESSTTCHHHH
T ss_pred CCCCCEEEEECCCCHHHH
T ss_conf 689978998478997999
No 215
>2i7c_A Spermidine synthase; transferase, structural genomics consortium, SGC; HET: AAT 1PG; 1.71A {Plasmodium falciparum 3D7} PDB: 2hte_A* 3b7p_A* 2pwp_A*
Probab=40.82 E-value=17 Score=15.92 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=48.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC---C---C-EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCC-----CHHHHHHHHH
Q ss_conf 86366773888999999999872---9---9-899985979999999848998999861368877-----0689999984
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS---E---Y-LVIESKNEKEALEQIDHHHPDLVILDMDIIGEN-----SPNLCLKLKR 70 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~---~---~-~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~d-----G~~~~~~ir~ 70 (140)
..+|-+||=|+..-...+.++.. . - .-+...||.+.+... +..+|+||+|..-|... ..++.+.+++
T Consensus 102 ~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~d~r~~v~~~Da~~~l~~~-~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~ 180 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYN 180 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHCCHHHHHHHHH
T ss_conf 63699974688999999975144014224665499973078987517-77777899958998874055537999999987
Q ss_pred C
Q ss_conf 3
Q T0634 71 S 71 (140)
Q Consensus 71 ~ 71 (140)
.
T Consensus 181 ~ 181 (283)
T 2i7c_A 181 A 181 (283)
T ss_dssp H
T ss_pred H
T ss_conf 7
No 216
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A*
Probab=40.49 E-value=17 Score=15.89 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=33.4
Q ss_pred CCCCEEEEECC--CHH------HHHHHHHHH-HCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 99863667738--889------999999998-7299899985979999999848998999861368
Q T0634 1 MSLKKILIIDQ--QDF------SRIELKNFL-DSEYLVIESKNEKEALEQIDHHHPDLVILDMDII 57 (140)
Q Consensus 1 m~m~rILivDD--~~~------~r~~l~~~L-~~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp 57 (140)
|+ +||.|+=. +.. ....+...| +.||.++.......-+..++...||.|+.-+.=+
T Consensus 1 m~-~ki~vl~GG~S~E~~iSl~sg~~i~~aL~~~g~~~~~id~~~~~~~~l~~~~~d~v~~~~~G~ 65 (306)
T 1iow_A 1 MT-DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGR 65 (306)
T ss_dssp CC-CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCST
T ss_pred CC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEEECCCC
T ss_conf 98-509999386874228499999999999988699799988984118887545987999916788
No 217
>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: c.37.1.12 d.58.18.13
Probab=40.44 E-value=17 Score=15.88 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=27.2
Q ss_pred HHHHHHHCCCCEEEEECCCCCCC---CHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 99999848998999861368877---06899999843368997178731
Q T0634 38 ALEQIDHHHPDLVILDMDIIGEN---SPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~d---G~~~~~~ir~~~~~~~iPiI~lt 83 (140)
|++..--..|+++|+|--....| -.++...|++.....++-||++|
T Consensus 150 aIArAL~~~P~lLl~DEPTsaLD~~~~~~i~~ll~~l~~~~g~tii~iT 198 (343)
T 3dhw_C 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT 198 (343)
T ss_dssp HHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEB
T ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9987632699999981887657988999999999999995098999988
No 218
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*
Probab=40.13 E-value=17 Score=15.85 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 9799999998489989998613688
Q T0634 34 NEKEALEQIDHHHPDLVILDMDIIG 58 (140)
Q Consensus 34 ~~~eal~~~~~~~pdlii~D~~lp~ 58 (140)
.|.+++..+++..+. |++|+.+-+
T Consensus 43 ~G~~~v~~l~~~~~~-i~~D~K~~D 66 (246)
T 2yyu_A 43 EGPAIVAFLKEQGHA-VFLDLKLHD 66 (246)
T ss_dssp HTHHHHHHHHHTTCE-EEEEEEECS
T ss_pred HCHHHHHHHHHHCCC-EECCHHHHH
T ss_conf 289999999983898-231235641
No 219
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=39.77 E-value=17 Score=15.82 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=30.7
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 999998489989998613688770---6899999843368997178731
Q T0634 38 ALEQIDHHHPDLVILDMDIIGENS---PNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~dG---~~~~~~ir~~~~~~~iPiI~lt 83 (140)
|++..--..|+++++|--+.+.|- .++...|++...-.++.+|++|
T Consensus 148 aiARAL~~~P~illlDEP~s~LD~~~~~~i~~~l~~l~~~~~~T~i~vT 196 (359)
T 3fvq_A 148 ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVS 196 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9987543599899986887546999999999999999996199999998
No 220
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) class, TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8}
Probab=39.20 E-value=18 Score=15.76 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=30.2
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 999998489989998613688770---68999998433689971787316
Q T0634 38 ALEQIDHHHPDLVILDMDIIGENS---PNLCLKLKRSKGLKNVPLILLFS 84 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~dG---~~~~~~ir~~~~~~~iPiI~lta 84 (140)
+++..--..|+++|+|--.-+.|- .++...|++......+.+|++|-
T Consensus 143 alAral~~~P~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH 192 (359)
T 2yyz_A 143 ALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH 192 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEES
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99656634998999358744699999999999999999850989999938
No 221
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis}
Probab=38.48 E-value=18 Score=15.69 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=43.2
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89998613688770689999984336899717873167878899999966996486579888999999999999999999
Q T0634 48 DLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
Q Consensus 48 dlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~ 127 (140)
|+.+. ....+.-|..++..+.. .+|+|. |..+... +.++-|.++++.+|-++++|...+..++.......
T Consensus 286 di~v~-p~~~e~~~~~~~Ea~a~-----G~pvI~-~~~~~~~---e~i~~~~~G~~~~~~d~~~l~~~i~~ll~~~~~~~ 355 (394)
T 2jjm_A 286 DLMLL-LSEKESFGLVLLEAMAC-----GVPCIG-TRVGGIP---EVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHR 355 (394)
T ss_dssp SEEEE-CCSCCSCCHHHHHHHHT-----TCCEEE-ECCTTST---TTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHH
T ss_pred HHCCC-CCCHHHHHHHHHHHHHC-----CCCEEE-CCCCCHH---HHHCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHH
T ss_conf 21200-34313456767999975-----986999-4799869---99617970899789999999999999976999999
Q ss_pred H
Q ss_conf 9
Q T0634 128 D 128 (140)
Q Consensus 128 ~ 128 (140)
+
T Consensus 356 ~ 356 (394)
T 2jjm_A 356 N 356 (394)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 222
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=38.33 E-value=18 Score=15.67 Aligned_cols=104 Identities=8% Similarity=0.097 Sum_probs=62.1
Q ss_pred HHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEECCCCCCCC--H---HHHHHHHHCCCCCCCCEEEEECCCCHH
Q ss_conf 99999998729989998-59799999998489989998613688770--6---899999843368997178731678788
Q T0634 16 RIELKNFLDSEYLVIES-KNEKEALEQIDHHHPDLVILDMDIIGENS--P---NLCLKLKRSKGLKNVPLILLFSSEHKE 89 (140)
Q Consensus 16 r~~l~~~L~~~~~v~~a-~~~~eal~~~~~~~pdlii~D~~lp~~dG--~---~~~~~ir~~~~~~~iPiI~lta~~~~~ 89 (140)
-..-+.+...||.|... ++.......+.+-.-. +++=+.=|-.+| + ..++.+.. ...+.+|+|+=.+-+.+.
T Consensus 114 ~~Aa~~Lv~~GF~VlpY~~~D~~~ak~Led~Gc~-aVMPl~spIGsg~Gi~n~~~~~i~i~-~~~~~vPvIvDAGIG~PS 191 (268)
T 2htm_A 114 LKAAERLIEEDFLVLPYMGPDLVLAKRLAALGTA-TVMPLAAPIGSGWGVRTRALLELFAR-EKASLPPVVVDAGLGLPS 191 (268)
T ss_dssp HHHHHHHHHTTCEECCEECSCHHHHHHHHHHTCS-CBEEBSSSTTTCCCSTTHHHHHHHHH-TTTTSSCBEEESCCCSHH
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCC-EEEECCCCCCCCCCCCCHHHHHHHHH-HHCCCCCEEEECCCCCHH
T ss_conf 9999999868968998468789999999976984-78734444345655347778899998-636788768745889889
Q ss_pred HHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHH
Q ss_conf 999999669964865-----79888999999999999
Q T0634 90 AIVNGLHSGADDYLT-----KPFNRNDLLSRIEIHLR 121 (140)
Q Consensus 90 ~~~~a~~~Ga~dyl~-----KP~~~~eL~~~i~~~lr 121 (140)
+..++++.|+|..|. |--||..+..+.+...+
T Consensus 192 dAa~aMElG~DaVLvNTAIA~a~dP~~MA~Af~~AV~ 228 (268)
T 2htm_A 192 HAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp HHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999997379899853466637998999999999999
No 223
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=38.03 E-value=18 Score=15.65 Aligned_cols=68 Identities=12% Similarity=0.162 Sum_probs=46.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC---C----CEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCC------CHHHHHHHH
Q ss_conf 86366773888999999999872---9----9899985979999999848998999861368877------068999998
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS---E----YLVIESKNEKEALEQIDHHHPDLVILDMDIIGEN------SPNLCLKLK 69 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~---~----~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~d------G~~~~~~ir 69 (140)
-.+|-+||-|+..-...+.++.. . -.-+...||.+.++.. ...+|+||+|..=|... ..++.+.++
T Consensus 114 ~~~i~~VEiD~~Vie~a~~~~~~~~~~~~dprv~i~~~Da~~~l~~~-~~~yDvIi~D~~dp~~~~~~~L~t~eFy~~~~ 192 (296)
T 1inl_A 114 VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACY 192 (296)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-SSCEEEEEEEC----------CCSHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHC-CCCCCEEEEECCCCCCCCHHHHCCHHHHHHHH
T ss_conf 77279972778999999986154023236998479800389999747-87789899928986545134543699999998
Q ss_pred HC
Q ss_conf 43
Q T0634 70 RS 71 (140)
Q Consensus 70 ~~ 71 (140)
+.
T Consensus 193 ~~ 194 (296)
T 1inl_A 193 DA 194 (296)
T ss_dssp HH
T ss_pred HH
T ss_conf 74
No 224
>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural genomics, joint center for structural genomics, JCSG; HET: PGE; 2.13A {Mesorhizobium SP}
Probab=37.87 E-value=19 Score=15.63 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=24.5
Q ss_pred ECCHHHHHHHHHHCCCCEEEEECCCC-----CCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 85979999999848998999861368-----8770689999984336899717873167878899999966996486
Q T0634 32 SKNEKEALEQIDHHHPDLVILDMDII-----GENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 32 a~~~~eal~~~~~~~pdlii~D~~lp-----~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl 103 (140)
..+.++|++..+....-+||.|..=. ..|+..+++.+-+... .. .++...-|++...+|.++|+-.-+
T Consensus 278 ~~~~~eal~~a~~~~~PvvLaD~~DNpGgG~~gDsT~lL~~ll~~~~-~~---~~~~~i~DP~av~~a~~aGvGa~i 350 (495)
T 3iuu_A 278 LMSVDKALEIARTSRQLLALGDQGDRVMGAGPGDSPEIARVALEHFP-GL---KVAVPVYDPQAVRTAREAGENATV 350 (495)
T ss_dssp CBCHHHHHHHHHTCSSEEEEEEGGGCGGGTCCCCCCHHHHHHHHHCT-TC---CEEEEEECHHHHHHHHHHCTTCEE
T ss_pred CCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCC-CC---EEEEEECCHHHHHHHHHCCCCCEE
T ss_conf 65746789997447996450568998777887645899999986477-76---699983699999999765899778
No 225
>1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} SCOP: c.1.2.4 PDB: 1lbf_A* 1lbl_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 2c3z_A 3b5v_A
Probab=37.69 E-value=19 Score=15.61 Aligned_cols=88 Identities=14% Similarity=0.051 Sum_probs=53.1
Q ss_pred HHHHHHHHHHCCCE-EEEECCHHHHHHHHHHCCCCEEEEE-CCCC--CCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHH
Q ss_conf 99999999872998-9998597999999984899899986-1368--877068999998433689971787316787889
Q T0634 15 SRIELKNFLDSEYL-VIESKNEKEALEQIDHHHPDLVILD-MDII--GENSPNLCLKLKRSKGLKNVPLILLFSSEHKEA 90 (140)
Q Consensus 15 ~r~~l~~~L~~~~~-v~~a~~~~eal~~~~~~~pdlii~D-~~lp--~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~ 90 (140)
...++....+-|-+ ++++.|.+|.-..+. ..+++|=+. .++- ..|--.+.+.+...+ .++.+|.-||-...++
T Consensus 141 L~~l~~~a~~lgl~~LvEVh~~~El~ra~~-~~a~iIGINnRnL~t~~vd~~~~~~l~~~ip--~~~~~IaESGI~t~~d 217 (247)
T 1a53_A 141 LESLLEYARSYGMEPLIEINDENDLDIALR-IGARFIGINSRDLETLEINKENQRKLISMIP--SNVVKVAESGISERNE 217 (247)
T ss_dssp HHHHHHHHHTTTCCCEEEECSHHHHHHHHH-TTCSEEEEESBCTTTCCBCHHHHHHHHHHSC--TTSEEEEESCCCCHHH
T ss_pred HHHHHHHHHHHCCEEEEEECCHHHHHHHHC-CCCCEEEECCCCHHHCCCCHHHHHHHHHHCC--CCCEEEEECCCCCHHH
T ss_conf 899999999849956887479999999980-6988588715346640347678999996388--8987999627999999
Q ss_pred HHHHHHCCCCEEEEC
Q ss_conf 999996699648657
Q T0634 91 IVNGLHSGADDYLTK 105 (140)
Q Consensus 91 ~~~a~~~Ga~dyl~K 105 (140)
.....++|++.||.-
T Consensus 218 i~~l~~~G~davLIG 232 (247)
T 1a53_A 218 IEELRKLGVNAFLIG 232 (247)
T ss_dssp HHHHHHTTCCEEEEC
T ss_pred HHHHHHCCCCEEEEC
T ss_conf 999998799999989
No 226
>3cni_A Putative ABC type-2 transporter; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Thermotoga maritima MSB8}
Probab=37.60 E-value=19 Score=15.60 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=39.2
Q ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHC
Q ss_conf 63667738-88999999999872-9989998597999999984899899986136887706899999843
Q T0634 4 KKILIIDQ-QDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRS 71 (140)
Q Consensus 4 ~rILivDD-~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~ 71 (140)
.||-|||. ....-..+...|+. .+.+....|-++|.+.+++.....+|. +|. | |-+.|.+.
T Consensus 11 ~kiavvd~D~~~~s~~~~~~L~~~~~~~~~~~d~~eA~~~i~~g~~~~vIv---IP~--~--F~~~l~~g 73 (156)
T 3cni_A 11 QKVAIVREDTGTIAELAEKALGNMVDIVYAGSDLKEAEEAVKKEKAPAIIV---IPK--G--FSQSLESG 73 (156)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHTSSEEEEEESCHHHHHHHHHHHTCSEEEE---ECT--T--HHHHHHHT
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEEE---ECC--C--HHHHHHCC
T ss_conf 849999899997999999986369964899799999999998398479999---884--5--78998779
No 227
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural genomics, joint center for structural genomics, JCSG; 2.18A {Thermotoga maritima MSB8} SCOP: c.1.5.1
Probab=37.54 E-value=19 Score=15.60 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCCCC-CCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 97999999984899899986136887-706899999843368997178731678788999999669964865
Q T0634 34 NEKEALEQIDHHHPDLVILDMDIIGE-NSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 34 ~~~eal~~~~~~~pdlii~D~~lp~~-dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
+..+-...+-+...|++++|..=-.. .-.+.++.+|.. ++++|||. -.-...+.....+++||+....
T Consensus 237 ~~~eR~~~Lv~aG~D~~vid~a~g~~~~~~~~i~~~~~~--~~~~~via-Gnv~t~~~a~~L~~~Gad~i~v 305 (494)
T 1vrd_A 237 ETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKAD--YPDLPVVA-GNVATPEGTEALIKAGADAVKV 305 (494)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHH--CTTSCEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH--CCCCCEEE-EEECCHHHHHHHHHHCCCEEEE
T ss_conf 216899999977998999953553168899999999987--89985798-7625799999999728988985
No 228
>3fz9_A Glutaredoxin; oxidoreductase; HET: GSH; 1.70A {Populus tremula x populus tremuloides} PDB: 3fza_A*
Probab=36.92 E-value=19 Score=15.54 Aligned_cols=85 Identities=16% Similarity=0.222 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHCC-CEEEEECC---HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECC--CC
Q ss_conf 9999999998729-98999859---799999998489989998613688770689999984336899717873167--87
Q T0634 14 FSRIELKNFLDSE-YLVIESKN---EKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSS--EH 87 (140)
Q Consensus 14 ~~r~~l~~~L~~~-~~v~~a~~---~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~--~~ 87 (140)
....-++..+... ..+....+ ...|.+++++........|+.....++.++-..+.+....+.+|.|++-+. +.
T Consensus 6 ~~~~~v~~~i~~~~Vvvys~~~Cp~C~~ak~lL~~~gi~~~~~~id~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~IGG 85 (112)
T 3fz9_A 6 RLEDAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLTGQHTVPNVFIGGKHIGG 85 (112)
T ss_dssp HHHHHHHHHHHHSSEEEEECTTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTEEEES
T ss_pred HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEECCEEEEC
T ss_conf 79999999983698999989989489999999996599817999971477889999999995599889868899989807
Q ss_pred HHHHHHHHHCC
Q ss_conf 88999999669
Q T0634 88 KEAIVNGLHSG 98 (140)
Q Consensus 88 ~~~~~~a~~~G 98 (140)
-++..+....|
T Consensus 86 ~~dl~~l~~~g 96 (112)
T 3fz9_A 86 CTDTVKLYRKG 96 (112)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
T ss_conf 89999999859
No 229
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=36.90 E-value=7.8 Score=17.99 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=53.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE--CCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 99863667738889999999998729989998--5979999999848998999861368877068999998433689971
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDSEYLVIES--KNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~~~~v~~a--~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
|+||||||.|.-.. . ....|+..+.|... .+.++.++.+ ...|.+|+-..-+ .+ -++ +.+. +++.
T Consensus 2 ~~mpkVLi~~~~~~--~-~~~~L~~~~ev~~~~~~~~~el~~~i--~~~d~li~~~~~~-v~-~e~---l~~~---p~LK 68 (529)
T 1ygy_A 2 VSLPVVLIADKLAP--S-TVAALGDQVEVRWVDGPDRDKLLAAV--PEADALLVRSATT-VD-AEV---LAAA---PKLK 68 (529)
T ss_dssp -CCCEEEECSSCCG--G-GGTTSCSSSEEEECCTTSHHHHHHHG--GGCSEEEECSSSC-BC-HHH---HHTC---TTCC
T ss_pred CCCCEEEECCCCCH--H-HHHHHHCCCEEEECCCCCHHHHHHHC--CCCEEEEECCCCC-CC-HHH---HHCC---CCCC
T ss_conf 98998999188999--9-99986188589989999989999872--8980999888998-19-999---8159---9971
Q ss_pred EEEEECCC-CHHHHHHHHHCCCCEEEECCCCHHHH
Q ss_conf 78731678-78899999966996486579888999
Q T0634 79 LILLFSSE-HKEAIVNGLHSGADDYLTKPFNRNDL 112 (140)
Q Consensus 79 iI~lta~~-~~~~~~~a~~~Ga~dyl~KP~~~~eL 112 (140)
+|...+.+ +.-+...|.+.|..=.=+...+....
T Consensus 69 ~I~~~g~G~D~iD~~~a~~~gI~V~n~p~~~~~~v 103 (529)
T 1ygy_A 69 IVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSA 103 (529)
T ss_dssp EEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHH
T ss_pred EEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHH
T ss_conf 99999833350158889867989998898784899
No 230
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=36.85 E-value=19 Score=15.53 Aligned_cols=92 Identities=13% Similarity=0.192 Sum_probs=46.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 86366773888999999999872998999859799999998489989998613688770689999984336899717873
Q T0634 3 LKKILIIDQQDFSRIELKNFLDSEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
|+|++|+=.-+.. .+...+..+.|.||.--...=....||+|+=|+.=- .-+..+.++. ...+++..
T Consensus 1 M~~~~i~~gG~~~------~~~~~~d~iIaaDgGa~~l~~~gi~Pd~iiGDfDSi---~~~~~~~~~~----~~~~i~~~ 67 (218)
T 3ihk_A 1 MTKVALFSGGDLT------YFTRDFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSV---SAEEFKQIKA----KAKKLVMA 67 (218)
T ss_dssp -CEEEEECSSCCS------CCCCCCSEEEEETHHHHHHHHTTCCCSEEEECCTTS---CHHHHHHHHT----TCSSEEEC
T ss_pred CCEEEEEECCCCH------HCCCCCCEEEEECCHHHHHHHCCCCCCEEECCCCCC---CHHHHHHHHH----CCCEEEEC
T ss_conf 9789999699743------403548999998458999997699979898789999---8678778752----59779998
Q ss_pred ECCCCHHHHHHH----HH-CCCCEEEECCC
Q ss_conf 167878899999----96-69964865798
Q T0634 83 FSSEHKEAIVNG----LH-SGADDYLTKPF 107 (140)
Q Consensus 83 ta~~~~~~~~~a----~~-~Ga~dyl~KP~ 107 (140)
....+..+...| .+ .|....+.=-+
T Consensus 68 p~dkD~TD~ekAL~~~~~~~~~~~I~i~G~ 97 (218)
T 3ihk_A 68 PAEKNDTDTELALKTIFDCFGRVEIIVFGA 97 (218)
T ss_dssp CSSCSSCHHHHHHHHHHHHTSSCEEEEESC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 844563389999999997579987999944
No 231
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum 3D7} SCOP: c.1.2.2
Probab=36.67 E-value=19 Score=15.51 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=64.3
Q ss_pred HHHHHHHHHCCCEEEEECCHH---HHHHH-HHHCCCCEEEEECCCCCCCCH-------HHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 999999987299899985979---99999-984899899986136887706-------8999998433689971787316
Q T0634 16 RIELKNFLDSEYLVIESKNEK---EALEQ-IDHHHPDLVILDMDIIGENSP-------NLCLKLKRSKGLKNVPLILLFS 84 (140)
Q Consensus 16 r~~l~~~L~~~~~v~~a~~~~---eal~~-~~~~~pdlii~D~~lp~~dG~-------~~~~~ir~~~~~~~iPiI~lta 84 (140)
-..++..-+.|..+-.|-++. +.+.- +.....|.|++=-.=||..|= +-++.+|+. .+++. |.+-|
T Consensus 104 ~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l~~~~id~Vl~M~V~pGf~GQ~f~~~~l~kI~~lr~~--~~~~~-I~VDG 180 (227)
T 1tqx_A 104 IQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKK--YKNLN-IQVDG 180 (227)
T ss_dssp HHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHH--CTTCE-EEEES
T ss_pred HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHH--CCCCC-EEEEC
T ss_conf 5666656425965766304665356789986106577899997414666434574036778889873--67866-28866
Q ss_pred CCCHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHHH
Q ss_conf 78788999999669964865-----798889999999999999
Q T0634 85 SEHKEAIVNGLHSGADDYLT-----KPFNRNDLLSRIEIHLRT 122 (140)
Q Consensus 85 ~~~~~~~~~a~~~Ga~dyl~-----KP~~~~eL~~~i~~~lr~ 122 (140)
.-..+....+.++||+-++. |-=++.+-...++..++.
T Consensus 181 GIn~eti~~l~~aGad~~V~GSaif~~~d~~~~i~~Lr~~i~~ 223 (227)
T 1tqx_A 181 GLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQK 223 (227)
T ss_dssp SCCHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 6788889999976999999666987899999999999999999
No 232
>2esr_A Methyltransferase; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes MGAS10394} SCOP: c.66.1.46
Probab=36.60 E-value=19 Score=15.51 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=37.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CC--EE-EEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 6366773888999999999872-99--89-99859799999998489989998613688770689999984
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EY--LV-IESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKR 70 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~--~v-~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~ 70 (140)
++|..||-++......+.-+.. +. .+ +...|..+.++.+ ...+|+|++|-.-.......++..|..
T Consensus 55 ~~v~~ve~~~~ai~~~~~n~~~~~~~~~i~i~~~D~~~~l~~~-~~~fDiI~~dPPy~~~~~~~~l~~i~~ 124 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-TGRFDLVFLDPPYAKETIVATIEALAA 124 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB-CSCEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHCEEEEEHHHHHHHHHCCCHHCCCCCCCCHHCCCHHHHHHCC-CCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 0044896148886653214000013442000012135543213-466887898997531269999999998
No 233
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=36.48 E-value=20 Score=15.49 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=29.4
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCH---HHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 9999984899899986136887706---89999984336899717873167
Q T0634 38 ALEQIDHHHPDLVILDMDIIGENSP---NLCLKLKRSKGLKNVPLILLFSS 85 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~dG~---~~~~~ir~~~~~~~iPiI~lta~ 85 (140)
+++..--..|+++|+|--.-++|-. ++.+.|++......+-||++|-.
T Consensus 153 ~iA~aL~~~P~lllLDEPtagLD~~~~~~i~~~l~~l~~~~g~Tvi~vtHd 203 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 999987549988986488555899999999999999998539899997799
No 234
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=36.48 E-value=20 Score=15.49 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=36.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEC------------------------CHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9863667738889999999998-7299899985------------------------97999999984899899986136
Q T0634 2 SLKKILIIDQQDFSRIELKNFL-DSEYLVIESK------------------------NEKEALEQIDHHHPDLVILDMDI 56 (140)
Q Consensus 2 ~m~rILivDD~~~~r~~l~~~L-~~~~~v~~a~------------------------~~~eal~~~~~~~pdlii~D~~l 56 (140)
+|+||||.--+=.+...+...| +.||.|+... |....-+.+....|+.|+.-...
T Consensus 20 ~MKkILVtGasGfiG~~lv~~L~~~g~~Vi~id~~~~~~~~~~~~~~~~~~i~~Di~d~~~~~~~~~~~~~~~v~~~a~~ 99 (333)
T 2q1w_A 20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAAS 99 (333)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 96879990788789999999999782989999789855687751389948998225788999998741487548860040
No 235
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Probab=36.13 E-value=20 Score=15.46 Aligned_cols=105 Identities=11% Similarity=0.075 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHCC-CEEEE--ECCHHHHHHHHHHCCCCEEEEECCCCCC--CCHHHHHHHHHCCCCCCCCEEEEECC-
Q ss_conf 889999999998729-98999--8597999999984899899986136887--70689999984336899717873167-
Q T0634 12 QDFSRIELKNFLDSE-YLVIE--SKNEKEALEQIDHHHPDLVILDMDIIGE--NSPNLCLKLKRSKGLKNVPLILLFSS- 85 (140)
Q Consensus 12 ~~~~r~~l~~~L~~~-~~v~~--a~~~~eal~~~~~~~pdlii~D~~lp~~--dG~~~~~~ir~~~~~~~iPiI~lta~- 85 (140)
+|..+.+++-+.++. .-++. ..+..++++++++-.|.+.++-+.+|-. -|.++++.|+......+.||+.=.-.
T Consensus 69 ~p~~~~l~~lm~~KksnL~vAlD~~~~~e~l~la~~l~p~i~~~Kig~~l~~~~g~~~i~~L~~la~~~~~~IflDlK~~ 148 (312)
T 3g3d_A 69 HPVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKFA 148 (312)
T ss_dssp CHHHHHHHHHHHHHTCCEEEECCCSCHHHHHHHHHHHGGGCSEEEECGGGCTTCCHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECHHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 96999999999734687899964799999999999828840599987899732799999999998862596497014315
Q ss_pred CCHHHHHHHHHCC-------CCEEEECCCCHHHHHHHH
Q ss_conf 8788999999669-------964865798889999999
Q T0634 86 EHKEAIVNGLHSG-------ADDYLTKPFNRNDLLSRI 116 (140)
Q Consensus 86 ~~~~~~~~a~~~G-------a~dyl~KP~~~~eL~~~i 116 (140)
+-+.+..+++..| ++-.-.=++...+.+..+
T Consensus 149 DIgnTv~~~~~~~~~~i~~~ad~vTvh~~~G~~~i~~~ 186 (312)
T 3g3d_A 149 DIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGL 186 (312)
T ss_dssp SCHHHHHHHHHCTTTCHHHHCSEEEEESTTCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
T ss_conf 83478999999999873157757997447887999999
No 236
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=35.55 E-value=20 Score=15.40 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=28.8
Q ss_pred HHHHHHHCCCCEEEEECCCCCCC---CHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 99999848998999861368877---06899999843368997178731
Q T0634 38 ALEQIDHHHPDLVILDMDIIGEN---SPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~d---G~~~~~~ir~~~~~~~iPiI~lt 83 (140)
+++..--..|+++|+|--.-+.| -.++.+.|++.....+..||++|
T Consensus 138 ~iArAL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~~~tii~vt 186 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9998886399878864874328999999999999999985898999991
No 237
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.05A {Escherichia coli K12} SCOP: c.66.1.46
Probab=35.44 E-value=20 Score=15.39 Aligned_cols=68 Identities=13% Similarity=0.053 Sum_probs=38.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CC--EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC
Q ss_conf 6366773888999999999872-99--899985979999999848998999861368877068999998433
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EY--LVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSK 72 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~--~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~ 72 (140)
.+|..||-+......++.-++. +. ..+...+....+.. ...++|+|++|---......+++..|.+..
T Consensus 78 ~~v~fVE~~~~a~~~lk~N~~~~~~~~~~ii~~da~~~l~~-~~~~fDlIflDPPY~~~~~~~~l~~L~~~~ 148 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ-KGTPHNIVFVDPPFRRGLLEETINLLEDNG 148 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS-CCCCEEEEEECCSSSTTTHHHHHHHHHHTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHC-CCCCCCEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 88689986121678999999863456515995227776540-365553799769975434999999999878
No 238
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; mannac-6-P epimerase, NANE, structural genomics, protein structure initiative; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=35.14 E-value=21 Score=15.36 Aligned_cols=87 Identities=8% Similarity=-0.104 Sum_probs=53.1
Q ss_pred HHHHHHHHHHCCC--E-EEEECCHHHHHHHHHHCCCCEEEEECCC------CCC---CCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 9999999987299--8-9998597999999984899899986136------887---70689999984336899717873
Q T0634 15 SRIELKNFLDSEY--L-VIESKNEKEALEQIDHHHPDLVILDMDI------IGE---NSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 15 ~r~~l~~~L~~~~--~-v~~a~~~~eal~~~~~~~pdlii~D~~l------p~~---dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
....++...+.+. . .....+..+++.... ...|.+.+...- ... ..++++..+++. .++|++.-
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~-~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~iPVia~ 181 (223)
T 1y0e_A 106 LDELVSYIRTHAPNVEIMADIATVEEAKNAAR-LGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS---VDAKVIAE 181 (223)
T ss_dssp HHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-TTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH---CCSEEEEE
T ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC---CCCCEEEE
T ss_conf 99999999871883468658899999999998-279935896058854465887644279999999843---68878986
Q ss_pred ECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 16787889999996699648657
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTK 105 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~K 105 (140)
.+-.+.++..+++++||+..+.=
T Consensus 182 GGI~t~~dv~~~l~~GAdgV~vG 204 (223)
T 1y0e_A 182 GNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 89899999999998699999985
No 239
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=35.08 E-value=21 Score=15.35 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=50.0
Q ss_pred HHHHCCCCEEEEEC---CCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 99848998999861---368877068999998433689971787316787889999996699648657988899999999
Q T0634 41 QIDHHHPDLVILDM---DIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIE 117 (140)
Q Consensus 41 ~~~~~~pdlii~D~---~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~ 117 (140)
.+.+.++.-+++|+ ..-+.+|+..+..+.+.-...+.++.+... .+..+.-.-.+|.+.|+.-+ +.++-+++++
T Consensus 36 ~~~~~~~~~viiDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~~~~~~~-~~eeAl~~~~ 112 (117)
T 1h4x_A 36 AIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNP--SPTMRKVFQFSGLGPWMMDA-TEEEAIDRVR 112 (117)
T ss_dssp HHHHTSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESC--CHHHHHHHHHTTCGGGEECS-CHHHHHHHTC
T ss_pred HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHCCCCEEECCC-CHHHHHHHHH
T ss_conf 99649997899997698851879999999999999967998999939--98999999981998677259-9999999987
Q ss_pred HH
Q ss_conf 99
Q T0634 118 IH 119 (140)
Q Consensus 118 ~~ 119 (140)
..
T Consensus 113 ~~ 114 (117)
T 1h4x_A 113 GI 114 (117)
T ss_dssp --
T ss_pred HH
T ss_conf 56
No 240
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=34.91 E-value=21 Score=15.34 Aligned_cols=41 Identities=12% Similarity=-0.034 Sum_probs=27.8
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 899999843368997178731678788999999669964865
Q T0634 63 NLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 63 ~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
+.++.+++.- .+++|||..-+-.+.++..+.+.+||+-.=.
T Consensus 230 ~~v~~i~~~~-~~~l~IIg~GGI~s~~Da~~~i~aGA~~Vqv 270 (311)
T 1jub_A 230 ANVRAFYTRL-KPEIQIIGTGGIETGQDAFEHLLCGATMLQI 270 (311)
T ss_dssp HHHHHHHTTS-CTTSEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHCCCCCEEE
T ss_conf 9999999984-6872589727838999999999849983145
No 241
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A*
Probab=34.82 E-value=21 Score=15.33 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=24.7
Q ss_pred CC--CCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 99--8636677388899999999987299899985
Q T0634 1 MS--LKKILIIDQQDFSRIELKNFLDSEYLVIESK 33 (140)
Q Consensus 1 m~--m~rILivDD~~~~r~~l~~~L~~~~~v~~a~ 33 (140)
|+ |++ |||=..|.....+..+|..+|.|..+.
T Consensus 1 m~~~~K~-LiIaEkPs~ak~Ia~~LG~~y~Vt~~~ 34 (633)
T 2gai_A 1 MAKKVKK-YIVVESPAKAKTIKSILGNEYEVFASM 34 (633)
T ss_dssp ------C-EEEESCHHHHHHHHHHHGGGSEEEECC
T ss_pred CCCCCCE-EEEECCHHHHHHHHHHCCCCCEEEEEC
T ss_conf 9645747-999878799999999819398999743
No 242
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=34.68 E-value=21 Score=15.31 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=30.0
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 999998489989998613688770---68999998433689971787316
Q T0634 38 ALEQIDHHHPDLVILDMDIIGENS---PNLCLKLKRSKGLKNVPLILLFS 84 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~dG---~~~~~~ir~~~~~~~iPiI~lta 84 (140)
+++..--..|+++|+|--.-+.|- .++...|++......+.||++|-
T Consensus 137 aiAraL~~~P~lLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtH 186 (348)
T 3d31_A 137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186 (348)
T ss_dssp HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 89998866999999879865689999999999999999837989999938
No 243
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, parkinson'S disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=34.58 E-value=21 Score=15.30 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=22.0
Q ss_pred CCCCEEEEECCCH--------------HHHHHHHHHHHCCCEEEEEC
Q ss_conf 9986366773888--------------99999999987299899985
Q T0634 1 MSLKKILIIDQQD--------------FSRIELKNFLDSEYLVIESK 33 (140)
Q Consensus 1 m~m~rILivDD~~--------------~~r~~l~~~L~~~~~v~~a~ 33 (140)
|+ +|||||=-+. ....-+..+.++||+|..|+
T Consensus 4 m~-KkiLiv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~iaS 49 (224)
T 1u9c_A 4 MS-KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVAS 49 (224)
T ss_dssp CC-CEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CC-CEEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 77-63899975810216887563028889999999998899799994
No 244
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=34.24 E-value=21 Score=15.27 Aligned_cols=69 Identities=10% Similarity=0.080 Sum_probs=50.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHC--CC-EEEEECCHHHHHHHHHHCCCCEEEEECCCCC-----CCCHHHHHHHHHCC
Q ss_conf 6366773888999999999872--99-8999859799999998489989998613688-----77068999998433
Q T0634 4 KKILIIDQQDFSRIELKNFLDS--EY-LVIESKNEKEALEQIDHHHPDLVILDMDIIG-----ENSPNLCLKLKRSK 72 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~--~~-~v~~a~~~~eal~~~~~~~pdlii~D~~lp~-----~dG~~~~~~ir~~~ 72 (140)
.+|.+||=++....+.+..+.- .- .-+...|+.+.++.+....+|+|++|..-+. +...++.+.+++.-
T Consensus 114 ~~v~~VEiDp~vv~lAr~~f~l~~~~rv~v~~~Da~~~l~~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~r~L 190 (317)
T 3gjy_A 114 SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGL 190 (317)
T ss_dssp CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHE
T ss_pred CEEEEEECCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCCHHHCHHHHHHHHHHHC
T ss_conf 86999989889999999747999899769998979999987445778679994788766642223199999999743
No 245
>2r79_A Periplasmic binding protein; heme transport, transport protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=34.17 E-value=21 Score=15.26 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=27.4
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH
Q ss_conf 99999848998999861368877068999998433689971787316787889999
Q T0634 38 ALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVN 93 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~ 93 (140)
-++.+....|||||..... ..-+....+++ ..+|++.++.....+...+
T Consensus 51 n~E~I~~l~PDLIi~~~~~---~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~ 99 (283)
T 2r79_A 51 AAEGVLALRPDILIGTEEM---GPPPVLKQLEG----AGVRVETLSAKPDLEALES 99 (283)
T ss_dssp CHHHHHTTCCSEEEECTTC---CCHHHHHHHHH----TTCCEEECCCCSSHHHHHH
T ss_pred CHHHHHHCCCCEEEEECCC---CCHHHHHHHHH----CCCCEEECCCCCCHHHHHH
T ss_conf 9999970599869971565---64167899875----2862365288888788889
No 246
>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1f3o_A*
Probab=33.68 E-value=22 Score=15.21 Aligned_cols=47 Identities=11% Similarity=0.179 Sum_probs=30.8
Q ss_pred HHHHHHHCCCCEEEEECCCCCCC---CHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 99999848998999861368877---068999998433689971787316
Q T0634 38 ALEQIDHHHPDLVILDMDIIGEN---SPNLCLKLKRSKGLKNVPLILLFS 84 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~d---G~~~~~~ir~~~~~~~iPiI~lta 84 (140)
|++..--..|+++++|-...+.| ...+...|++.....++-+|++|-
T Consensus 155 aIArAL~~~P~llllDEPTs~LD~~~~~~i~~ll~~l~~~~~~tii~vTH 204 (235)
T 1l2t_A 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 99987644999999808866579899999999999999954999999889
No 247
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=33.26 E-value=13 Score=16.52 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=22.6
Q ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCEEEEE
Q ss_conf 863667738889999999998-729989998
Q T0634 3 LKKILIIDQQDFSRIELKNFL-DSEYLVIES 32 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L-~~~~~v~~a 32 (140)
|+||||.--.=.+..-+...| +.|+.|+..
T Consensus 1 MkkIlVTG~sGfiG~~lv~~L~~~g~~V~~~ 31 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVV 31 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 9989988888889999999999783989999
No 248
>2hxt_A L-fuconate dehydratase; enolase superfamily, D- erythromohydroxamate, unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A
Probab=32.88 E-value=22 Score=15.13 Aligned_cols=79 Identities=10% Similarity=0.064 Sum_probs=52.2
Q ss_pred ECCHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEE-ECCCCH
Q ss_conf 8597999999984-89989998613688770689999984336899717873167878899999966996486-579888
Q T0634 32 SKNEKEALEQIDH-HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYL-TKPFNR 109 (140)
Q Consensus 32 a~~~~eal~~~~~-~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl-~KP~~~ 109 (140)
+-+..+|+..++. ..+++.++.--++..|-....+..++. ..+||..=-+..+.....+.++.|+-|++ .||...
T Consensus 252 ~~~~~~Ai~~~~~L~~~~~~wiEeP~~~~d~~~~~~~~~~~---~~ipIa~gE~~~~~~~~~~~i~~~a~dii~~d~~~~ 328 (441)
T 2hxt_A 252 RWDVGPAIDWMRQLAEFDIAWIEEPTSPDDVLGHAAIRQGI---TPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARV 328 (441)
T ss_dssp CCCHHHHHHHHHTTGGGCCSCEECCSCTTCHHHHHHHHHHH---TTSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTS
T ss_pred CCCHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHCCC---CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 61078899999976542242220889856689998753037---887611775300266689998749855204575506
Q ss_pred HHHH
Q ss_conf 9999
Q T0634 110 NDLL 113 (140)
Q Consensus 110 ~eL~ 113 (140)
.=+.
T Consensus 329 GGit 332 (441)
T 2hxt_A 329 GGVN 332 (441)
T ss_dssp SHHH
T ss_pred CCHH
T ss_conf 9999
No 249
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=32.81 E-value=22 Score=15.12 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHCCCE-EEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCH-----------HHHHHHHHCCCCCCCCEEE
Q ss_conf 999999999872998-9998597999999984899899986136887706-----------8999998433689971787
Q T0634 14 FSRIELKNFLDSEYL-VIESKNEKEALEQIDHHHPDLVILDMDIIGENSP-----------NLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 14 ~~r~~l~~~L~~~~~-v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~-----------~~~~~ir~~~~~~~iPiI~ 81 (140)
.....+...++.|.. ++++.+.+++..... ..|++|-..-.=.-+.|. .+++.+++. .+++||+.
T Consensus 102 e~~~~v~~a~~~gl~~IvCvge~~e~~~~~~-l~~~iIayEP~waIGtg~~~~~~~~e~i~~~i~~i~~~--~~~v~ily 178 (226)
T 1w0m_A 102 DLARLVAKAKSLGLDVVVCAPDPRTSLAAAA-LGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRH--FPEVSVIT 178 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHH--CTTSEEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCHHHHHHHC-CCCCEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHCC--CCCCEEEE
T ss_conf 1589999999869989998686078776403-68827986051111478789858889998776542035--78803999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHH
Q ss_conf 31678788999999669964865-----79888999999999
Q T0634 82 LFSSEHKEAIVNGLHSGADDYLT-----KPFNRNDLLSRIEI 118 (140)
Q Consensus 82 lta~~~~~~~~~a~~~Ga~dyl~-----KP~~~~eL~~~i~~ 118 (140)
-.+-...+....+.+.|+|++|. |+-++...+..+..
T Consensus 179 GGgV~~~n~~~~~~~~g~DGvLVGsAsl~a~d~~~~i~~l~~ 220 (226)
T 1w0m_A 179 GAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAK 220 (226)
T ss_dssp ESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHCCCCCEEEEEHHHHCCCCHHHHHHHHHH
T ss_conf 547577679999851899589963211168898999999999
No 250
>3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase; HET: FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A*
Probab=32.46 E-value=23 Score=15.09 Aligned_cols=60 Identities=12% Similarity=-0.093 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE------C-CCCHHHHHHHHHHHHHHH
Q ss_conf 6899999843368997178731678788999999669964865------7-988899999999999999
Q T0634 62 PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT------K-PFNRNDLLSRIEIHLRTQ 123 (140)
Q Consensus 62 ~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~------K-P~~~~eL~~~i~~~lr~~ 123 (140)
++.++.+++. ++..|||-.-+-.+.++..+.+.+||+-.=. + |.-..++..-+...|+.+
T Consensus 265 l~~v~~i~~~--~~~~~IIg~GGI~s~~Da~e~i~AGAs~VQv~Tal~~~Gp~~i~~I~~~L~~~l~~~ 331 (354)
T 3gz3_A 265 LANINAFYRR--CPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKK 331 (354)
T ss_dssp HHHHHHHHHH--CTTSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--CCCCCEEEECCCCCHHHHHHHHHCCCCCEEECHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999999997--599964744697999999999985999012117778519089999999999999983
No 251
>1d3g_A Dihydroorotate dehydrogenase; protein-antiproliferative agent complex, oxidoreductase; HET: BRE FMN ORO DDQ; 1.60A {Homo sapiens} SCOP: c.1.4.1 PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 2b0m_A* 1uum_A* 1uuo_A*
Probab=32.14 E-value=23 Score=15.06 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=24.8
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 9999984336899717873167878899999966996486
Q T0634 64 LCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 64 ~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl 103 (140)
.++.+++.. ..++|||-..+-.+.++..+.+.+||+-.=
T Consensus 287 ~v~~v~~~~-~~~ipIIg~GGI~~~~Da~e~i~aGA~~VQ 325 (367)
T 1d3g_A 287 TIREMYALT-QGRVPIIGVGGVSSGQDALEKIRAGASLVQ 325 (367)
T ss_dssp HHHHHHHHT-TTCSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHH-CCCCCEEEECCCCCHHHHHHHHHCCCCHHH
T ss_conf 899999985-899558998796999999999983998640
No 252
>1ec7_A Glucarate dehydratase; lyase; 1.90A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 1jct_A* 1bqg_A
Probab=31.77 E-value=23 Score=15.02 Aligned_cols=73 Identities=10% Similarity=-0.005 Sum_probs=47.2
Q ss_pred ECCHHHHHHHHHHCCCCEEEEECCC-CC--CCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 8597999999984899899986136-88--7706899999843368997178731678788999999669964865798
Q T0634 32 SKNEKEALEQIDHHHPDLVILDMDI-IG--ENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPF 107 (140)
Q Consensus 32 a~~~~eal~~~~~~~pdlii~D~~l-p~--~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~ 107 (140)
+-+..+|+++++.-.......-... |. .+..+.++.+|+.. .+||..=-+..+.....+.++.|+.|++.|+.
T Consensus 239 ~~~~~~A~~~~~~l~~~~~~~eep~~~~~~~~~~~~~~~lr~~~---~vPIa~gE~~~~~~~~~~~i~~~a~di~~~d~ 314 (446)
T 1ec7_A 239 AWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRAT---GLPTATNMIATDWRQMGHTLSLQSVDIPLADP 314 (446)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEESCBCCBTTBCHHHHHHHHHHHH---CCCEEESSSCSSHHHHHHHHHHTCCSEEBCCH
T ss_pred CCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHC---CCCEECCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 84999999999987525500020567787243399999999756---98187488768999999999842888998772
No 253
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=31.34 E-value=24 Score=14.97 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=11.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 971787316787889999996699648
Q T0634 76 NVPLILLFSSEHKEAIVNGLHSGADDY 102 (140)
Q Consensus 76 ~iPiI~lta~~~~~~~~~a~~~Ga~dy 102 (140)
++|||-..+-.+.++..+.+.+||+-.
T Consensus 787 ~ipIig~GGI~s~~Da~e~i~aGAs~V 813 (1025)
T 1gte_A 787 GFPILATGGIDSAESGLQFLHSGASVL 813 (1025)
T ss_dssp TCCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCHH
T ss_conf 987999899899999999998699799
No 254
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural genomics of infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=31.25 E-value=24 Score=14.96 Aligned_cols=114 Identities=8% Similarity=0.112 Sum_probs=69.5
Q ss_pred EEECCCHHHH---HHHHHHHHCC-C-EEEEECCHHHHHHHHHHCCCCEEEEE-------CCCCCCCC---HHHHHHHHHC
Q ss_conf 6773888999---9999998729-9-89998597999999984899899986-------13688770---6899999843
Q T0634 7 LIIDQQDFSR---IELKNFLDSE-Y-LVIESKNEKEALEQIDHHHPDLVILD-------MDIIGENS---PNLCLKLKRS 71 (140)
Q Consensus 7 LivDD~~~~r---~~l~~~L~~~-~-~v~~a~~~~eal~~~~~~~pdlii~D-------~~lp~~dG---~~~~~~ir~~ 71 (140)
.++.+..+.. ..++.+++.+ . ....+.|+..|.. +++..++.+.+. ..+|+... -+++..+++.
T Consensus 6 ~~~~~~~~~~~~a~~fr~l~~~~~~l~~p~a~D~~SAri-~e~aGf~ai~~ss~~~a~s~G~pD~~~~t~~e~~~~~~~I 84 (305)
T 3ih1_A 6 WVVNKQSTQEELANRFRALVEANEILQIPGAHDAMAALV-ARNTGFLALYLSGAAYTASKGLPDLGIVTSTEVAERARDL 84 (305)
T ss_dssp ---CCCCCHHHHHHHHHHHHHSSSCEEEEBCSSHHHHHH-HHHTTCSCEEECHHHHHHHHTCCSSSCSCHHHHHHHHHHH
T ss_pred CHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH-HHHCCCCEEEECHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 001488778999999999982799789827878899999-9985999999857999985899998746799999999999
Q ss_pred CCCCCCCEEE-E-ECCCCHHH----HHHHHHCCCCEEEE------CC---------CCHHHHHHHHHHHHH
Q ss_conf 3689971787-3-16787889----99999669964865------79---------888999999999999
Q T0634 72 KGLKNVPLIL-L-FSSEHKEA----IVNGLHSGADDYLT------KP---------FNRNDLLSRIEIHLR 121 (140)
Q Consensus 72 ~~~~~iPiI~-l-ta~~~~~~----~~~a~~~Ga~dyl~------KP---------~~~~eL~~~i~~~lr 121 (140)
....++|+++ + +++++... ..+..++||...-. |. ++.++...+|++..+
T Consensus 85 ~~~~~~PvivD~d~GyG~~~~v~~tv~~~~~aGaagi~iED~~~~k~~~~~~~~~lv~~ee~~~ki~aa~~ 155 (305)
T 3ih1_A 85 VRATDLPVLVDIDTGFGGVLNVARTAVEMVEAKVAAVQIEDQQLPKKCGHLNGKKLVTTEELVQKIKAIKE 155 (305)
T ss_dssp HHHHCCCEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEEECBCSSCCTTCTTCCCBCCHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 86428975887888999889999999999975970897233556554456566544159999999999997
No 255
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolase, D-tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3jrk_A 3kao_A*
Probab=31.19 E-value=24 Score=14.96 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=40.1
Q ss_pred HCCCCEEEEECCCCCC------------CCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHH----HHHHCCC--CEEEE
Q ss_conf 4899899986136887------------706899999843368997178731678788999----9996699--64865
Q T0634 44 HHHPDLVILDMDIIGE------------NSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIV----NGLHSGA--DDYLT 104 (140)
Q Consensus 44 ~~~pdlii~D~~lp~~------------dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~----~a~~~Ga--~dyl~ 104 (140)
+..||++=+...-+.. +--+.+...++......+|+|++++-...+... .|+++|+ .+|+.
T Consensus 201 e~g~Di~Kle~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~VvLsgG~~~e~f~~~l~~A~~aGa~~sGf~~ 279 (332)
T 3iv3_A 201 RFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGVSAELFQETLVFAHKAGAKFNGVLC 279 (332)
T ss_dssp GGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTCCHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred CCCCCEEEECCCCCHHHHHHCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 6689889953888777653202210011449999999998616799789981898989999999999974999748993
No 256
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=31.18 E-value=18 Score=15.73 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 86366773888999999999872998999
Q T0634 3 LKKILIIDQQDFSRIELKNFLDSEYLVIE 31 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~~~~v~~ 31 (140)
|.|.|||=..|.....++.+|+.+|.|.+
T Consensus 1 M~K~LiIaEKPs~Ak~Ia~~LG~~y~v~~ 29 (592)
T 1mw9_X 1 MGKALVIVESPAKAKTINKYLGSDYVVKS 29 (592)
T ss_dssp -CCEEEEESCHHHHHHHHTTSCTTEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHCCCCEEEE
T ss_conf 99839998989999999998299989995
No 257
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=31.10 E-value=24 Score=14.95 Aligned_cols=32 Identities=9% Similarity=0.188 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH--HHHHHHHHH
Q ss_conf 89999999998729989998597--999999984
Q T0634 13 DFSRIELKNFLDSEYLVIESKNE--KEALEQIDH 44 (140)
Q Consensus 13 ~~~r~~l~~~L~~~~~v~~a~~~--~eal~~~~~ 44 (140)
+....++..+-++|+.+..+++. ..+...++.
T Consensus 218 ~gV~elL~~Lk~~GikLaI~Tgk~~~~a~~~L~~ 251 (384)
T 1qyi_A 218 DEVKVLLNDLKGAGFELGIATGRPYTETVVPFEN 251 (384)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf 7499999999978995999189989999999998
No 258
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics, structural proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=31.09 E-value=24 Score=14.95 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=44.1
Q ss_pred CCEEEEECCCHH------HHHHHHHHHH-CCCEEEEE---------CCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 863667738889------9999999987-29989998---------5979999999848998999861368877068999
Q T0634 3 LKKILIIDQQDF------SRIELKNFLD-SEYLVIES---------KNEKEALEQIDHHHPDLVILDMDIIGENSPNLCL 66 (140)
Q Consensus 3 m~rILivDD~~~------~r~~l~~~L~-~~~~v~~a---------~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~ 66 (140)
.+|+|||=|... ...-+...|+ .+..+... .+..++.+.+++..+|+|| .+.|++-++.++
T Consensus 33 ~kr~livt~~~~~~~~~~~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~~~~~~~~~D~Ii---avGGGS~iD~aK 109 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIV---TVGGGSPHDCGK 109 (387)
T ss_dssp CSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEE---EEESHHHHHHHH
T ss_pred CCEEEEEECCCHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE---EECCCCCCCHHH
T ss_conf 98699998986676015699999999997699399980857998999999999987622998899---927874010888
Q ss_pred HHHH
Q ss_conf 9984
Q T0634 67 KLKR 70 (140)
Q Consensus 67 ~ir~ 70 (140)
.+.-
T Consensus 110 ~va~ 113 (387)
T 3bfj_A 110 GIGI 113 (387)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 8999
No 259
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; IDP02274, hydrolase, lipopolysaccharide biosynthesis, magnesium, structural genomics; 1.95A {Yersinia pestis CO92}
Probab=30.49 E-value=24 Score=14.88 Aligned_cols=74 Identities=9% Similarity=0.105 Sum_probs=50.0
Q ss_pred HHHHHHHHHCCCCEEEEECC--CCC-----------------CCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 99999998489989998613--688-----------------77068999998433689971787316787889999996
Q T0634 36 KEALEQIDHHHPDLVILDMD--IIG-----------------ENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLH 96 (140)
Q Consensus 36 ~eal~~~~~~~pdlii~D~~--lp~-----------------~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~ 96 (140)
.+.++.+ ...-++++|+. |.+ .||+. ++.+|+ ..+++.++|+.........+-+
T Consensus 40 ~~l~~ra--~~Ikllv~DVDGvLTDg~i~~~~~G~e~k~f~~~Dg~g-I~~L~~----~Gi~v~IITG~~s~~v~~~a~~ 112 (211)
T 3ij5_A 40 DDVIQRA--ANIRLLICDVDGVMSDGLIYMGNQGEELKAFNVRDGYG-IRCLIT----SDIDVAIITGRRAKLLEDRANT 112 (211)
T ss_dssp HHHHHHH--TTCSEEEECCTTTTSSSEEEEETTSCEEEEEEHHHHHH-HHHHHH----TTCEEEEECSSCCHHHHHHHHH
T ss_pred HHHHHHH--CCCCEEEEECCCCEECCEEEECCCCCEEEEEECCHHHH-HHHHHH----CCCEEEEECCCCHHHHHHHHHH
T ss_conf 8999998--17979999576847988699869997999985317999-999998----7998999768647999999998
Q ss_pred CCCCEEEECCCCHHHHHHHH
Q ss_conf 69964865798889999999
Q T0634 97 SGADDYLTKPFNRNDLLSRI 116 (140)
Q Consensus 97 ~Ga~dyl~KP~~~~eL~~~i 116 (140)
.|.+++...+-+...-+..+
T Consensus 113 Lgi~~~~~g~~dK~~~l~~l 132 (211)
T 3ij5_A 113 LGITHLYQGQSDKLVAYHEL 132 (211)
T ss_dssp HTCCEEECSCSSHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHH
T ss_conf 39711253857699999999
No 260
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=30.33 E-value=25 Score=14.87 Aligned_cols=117 Identities=11% Similarity=0.057 Sum_probs=59.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-CCHH-----------HHHHHHHHCCCCEEEEECCCCCCCCHH-----
Q ss_conf 99863667738889999999998729989998-5979-----------999999848998999861368877068-----
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDSEYLVIES-KNEK-----------EALEQIDHHHPDLVILDMDIIGENSPN----- 63 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~~~~v~~a-~~~~-----------eal~~~~~~~pdlii~D~~lp~~dG~~----- 63 (140)
|.-.||||+-.--.-..+...+.++.+.+..+ .|+. .-......+.+||+|..-.-|=.+|+.
T Consensus 13 m~~~rVLviGsGGREHAia~~l~~s~~~v~~~pgN~g~~~~~~~~~~~~~~~~~~~~~~dlvivgpE~pL~~gl~d~~~~ 92 (412)
T 1vkz_A 13 MKAVRVHILGSGGREHAIGWAFAKQGYEVHFYPGNAGTKRDGTNHPYEGEKTLKAIPEEDIVIPGSEEFLVEGVSNWRSN 92 (412)
T ss_dssp ---CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTGGGTSEECCCCTHHHHHTSCSSCEECCSSGGGTCC-----CTT
T ss_pred HCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHCCCC
T ss_conf 30678999893999999999985699808997998799752644675217877752479989989888999879873997
Q ss_pred ----------------HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCC------------CHHHHHHH
Q ss_conf ----------------99999843368997178731678788999999669964865798------------88999999
Q T0634 64 ----------------LCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPF------------NRNDLLSR 115 (140)
Q Consensus 64 ----------------~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~------------~~~eL~~~ 115 (140)
+.+.+-+.. ++|.---....+.+...+.++.=-..|+.||- +.++....
T Consensus 93 vfGP~~~aA~LE~SK~fak~~m~~~---~IPta~~~~~~~~~ea~~~~~~~~~P~VIK~dgla~GKGV~i~~~~~ea~~~ 169 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKKY---GIRTARFEVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEK 169 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHHT---TCCCCCEEEESSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHC---CCCCCCEECCCCCCCCCCHHHHCCCEEEEECCCCCCCCCCEEEECHHHHHHH
T ss_conf 4588889988888899999999853---8545530003233211110121276078850556666552576306678888
Q ss_pred HHHHH
Q ss_conf 99999
Q T0634 116 IEIHL 120 (140)
Q Consensus 116 i~~~l 120 (140)
+...+
T Consensus 170 ~~~~~ 174 (412)
T 1vkz_A 170 GSKLI 174 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 87642
No 261
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=30.25 E-value=25 Score=14.86 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=26.0
Q ss_pred HHHHCCCCEEEEECCCCCC-CCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 9984899899986136887-706899999843368997178731678788999999669964865
Q T0634 41 QIDHHHPDLVILDMDIIGE-NSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 41 ~~~~~~pdlii~D~~lp~~-dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
.+.+...|++++|..-+.. .-.+.++.+|... .+|||+ -.-...+....++++|||...+
T Consensus 112 ~l~~agvd~i~id~a~g~~~~~~~~ik~~r~~~---~~~vi~-GNV~t~~~a~~L~~aGAD~VkV 172 (361)
T 3khj_A 112 LLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIV-GNVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHTTCSEEEECCSCCSBHHHHHHHHHHHHHC---CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC---CCCEEE-CCCCCHHHHHHHHHCCCCEEEE
T ss_conf 999779999999389873178999999985138---987786-4538899999999729989997
No 262
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A*
Probab=30.20 E-value=25 Score=14.85 Aligned_cols=58 Identities=10% Similarity=-0.106 Sum_probs=31.5
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE------C-CCCHHHHHHHHHHHHHH
Q ss_conf 899999843368997178731678788999999669964865------7-98889999999999999
Q T0634 63 NLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT------K-PFNRNDLLSRIEIHLRT 122 (140)
Q Consensus 63 ~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~------K-P~~~~eL~~~i~~~lr~ 122 (140)
..++.+++ ..++.|||-.-+-.+.++..+.+.+||+-.=. + |.-..++..-+...|..
T Consensus 233 ~~v~~~~~--~~~~~~Iig~GGI~s~~Da~~~i~aGAs~Vqv~Tal~~~Gp~~i~~i~~~L~~~l~~ 297 (314)
T 2e6f_A 233 ANVNAFYR--RCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMAR 297 (314)
T ss_dssp HHHHHHHH--HCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HCCCCEEEEECCCCCHHHHHHHHHCCCCHHEEEHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998--669966996078589999999998298752211567750929999999999999998
No 263
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* 3evg_A*
Probab=30.15 E-value=25 Score=14.85 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=27.5
Q ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC---CCCHHHHHH
Q ss_conf 48998999861368877068999998433689971787316787889999996699648657---988899999
Q T0634 44 HHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTK---PFNRNDLLS 114 (140)
Q Consensus 44 ~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~K---P~~~~eL~~ 114 (140)
..+.|+||||+. |. +|--.+...|... + -+...+-++-|+ .|+.| |+.++.+..
T Consensus 146 ~~~~D~vlcDmg-es-s~~~~Vd~~Rtl~------V--------Lelae~wL~pgg-~FvvKVl~py~~~v~e~ 202 (305)
T 2p41_A 146 PERCDTLLCDIG-ES-SPNPTVEAGRTLR------V--------LNLVENWLSNNT-QFCVKVLNPYMSSVIEK 202 (305)
T ss_dssp CCCCSEEEECCC-CC-CSSHHHHHHHHHH------H--------HHHHHHHCCTTC-EEEEEESCCCSHHHHHH
T ss_pred CCCCCEEEECCC-CC-CCCCCCCCCHHHH------H--------HHHHHHHHCCCC-EEEEEECCCCCHHHHHH
T ss_conf 887887984587-78-8984212230799------9--------999999827698-79999788899789999
No 264
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=30.06 E-value=25 Score=14.84 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=12.1
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 1678788999999669964865798
Q T0634 83 FSSEHKEAIVNGLHSGADDYLTKPF 107 (140)
Q Consensus 83 ta~~~~~~~~~a~~~Ga~dyl~KP~ 107 (140)
-+-..+.+..+|+++|++-.-.=|.
T Consensus 115 PG~~TpsEi~~A~~~G~~~vKlFPA 139 (224)
T 1vhc_A 115 PGVNNPMAIEIALEMGISAVKFFPA 139 (224)
T ss_dssp CEECSHHHHHHHHHTTCCEEEETTT
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 8858899999999839996997464
No 265
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=29.89 E-value=25 Score=14.82 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=39.3
Q ss_pred CCCCEEEEECCCH-----HHHHHHHHHHHCCCEEEE------ECC---------------HHHHHHHHH--HCCCCEEEE
Q ss_conf 9986366773888-----999999999872998999------859---------------799999998--489989998
Q T0634 1 MSLKKILIIDQQD-----FSRIELKNFLDSEYLVIE------SKN---------------EKEALEQID--HHHPDLVIL 52 (140)
Q Consensus 1 m~m~rILivDD~~-----~~r~~l~~~L~~~~~v~~------a~~---------------~~eal~~~~--~~~pdlii~ 52 (140)
|+|+|||++-|.. .+...+..+-..|+.+.. +.+ -.+.+..+. ..+||.|.+
T Consensus 1 m~~~~il~i~d~~~~G~vgl~a~i~~l~alG~~~~~v~T~l~s~ht~~~~~~~~~~~~~~~~~~~~~~~~~~~~~daiki 80 (282)
T 3h74_A 1 MSLSTMLVAEDLSAVGGISLSSALPVLTAMQYDVAALPTSLLSTHTSGYGTPAVVDLSTWLPQVFAHWTRAQLHFDQALI 80 (282)
T ss_dssp -CCEEEEEEEEEEEESSCHHHHHHHHHHHTTEEEEEEEEEEEEECSSSSSSCCEECCTTTHHHHHHHHHHTTCCCSEEEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 98777999938888884799999999998799645850788225899888646658099999999999866998798998
Q ss_pred ECCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 6136887706899999843368997178
Q T0634 53 DMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
Q Consensus 53 D~~lp~~dG~~~~~~ir~~~~~~~iPiI 80 (140)
.+ ++...-.+.+..+.+. .+..|++
T Consensus 81 G~-l~s~~~~~~v~~~l~~--~~~~~vv 105 (282)
T 3h74_A 81 GY-VGSVALCQQITTYLEQ--QTLSLLV 105 (282)
T ss_dssp CC-CCSHHHHHHHHHHHHH--SCCSEEE
T ss_pred CC-CCCHHHHHHHHHHHHH--CCCCCEE
T ss_conf 99-8987999999999986--2777367
No 266
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus HB8} PDB: 2iss_A*
Probab=29.75 E-value=25 Score=14.81 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=42.2
Q ss_pred CHHHHHHHHHCCCCCCCCEEEEE--CCCCHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHH
Q ss_conf 06899999843368997178731--678788999999669964865-----79888999999999999
Q T0634 61 SPNLCLKLKRSKGLKNVPLILLF--SSEHKEAIVNGLHSGADDYLT-----KPFNRNDLLSRIEIHLR 121 (140)
Q Consensus 61 G~~~~~~ir~~~~~~~iPiI~lt--a~~~~~~~~~a~~~Ga~dyl~-----KP~~~~eL~~~i~~~lr 121 (140)
-+++++.+++. ..+|++... +-..+.+.-.+++.|++..++ |-=||......+.....
T Consensus 195 P~eLv~~v~e~---grLPVVnfAAGGIaTPADAAlmMqLG~DGVfVgSgIfks~dP~kmA~Aiv~Av~ 259 (297)
T 2zbt_A 195 PFELVKWVHDH---GRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVA 259 (297)
T ss_dssp CHHHHHHHHHH---SSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH---CCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECHHHCCCCCHHHHHHHHHHHHH
T ss_conf 79999999996---899869866777798789999997599889975143058998999999999996
No 267
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicusatcc 33223} PDB: 3krz_A*
Probab=29.19 E-value=26 Score=14.75 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=42.5
Q ss_pred CHHHHHHHHHH--CCCCEEEEEC-CCC-------CCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 97999999984--8998999861-368-------8770689999984336899717873167878899999966996486
Q T0634 34 NEKEALEQIDH--HHPDLVILDM-DII-------GENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 34 ~~~eal~~~~~--~~pdlii~D~-~lp-------~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl 103 (140)
+.+++++.++. ...|.+.... ... ..--..+++.+|+.. ++|++..-+..+++...++++.|..|++
T Consensus 228 ~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pvi~~G~i~~~e~ae~~l~~g~~DlV 304 (343)
T 3kru_A 228 NIDMMVEYINMIKDKVDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRC---NIKTSAVGLITTQELAEEILSNERADLV 304 (343)
T ss_dssp CHHHHHHHHHHHTTTCSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH---TCEEEEESSCCCHHHHHHHHHTTSCSEE
T ss_pred CHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEH
T ss_conf 8799999999988634430220255545555777532167999999974---9888998994999999999987992126
Q ss_pred E
Q ss_conf 5
Q T0634 104 T 104 (140)
Q Consensus 104 ~ 104 (140)
.
T Consensus 305 ~ 305 (343)
T 3kru_A 305 A 305 (343)
T ss_dssp E
T ss_pred H
T ss_conf 8
No 268
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=29.04 E-value=22 Score=15.18 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=22.0
Q ss_pred CC-CCEEEEE----CCCHH-HHHHHHHHHHCCCEE--EEECCH
Q ss_conf 99-8636677----38889-999999998729989--998597
Q T0634 1 MS-LKKILII----DQQDF-SRIELKNFLDSEYLV--IESKNE 35 (140)
Q Consensus 1 m~-m~rILiv----DD~~~-~r~~l~~~L~~~~~v--~~a~~~ 35 (140)
|+ .+|||+| ||+.. ..-.+..+.+.|+.| +++++|
T Consensus 1 m~~~~RvL~v~aHPDDe~l~~GGtla~~~~~G~~V~vv~~T~G 43 (303)
T 1q74_A 1 MSETPRLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLG 43 (303)
T ss_dssp --CCCEEEEEESSTTHHHHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9999869999748884788799999999986993899997488
No 269
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=28.72 E-value=26 Score=14.70 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=24.7
Q ss_pred CCCCEEEEECCCH----------------HHHHHHHHHHHCCCEEEEEC
Q ss_conf 9986366773888----------------99999999987299899985
Q T0634 1 MSLKKILIIDQQD----------------FSRIELKNFLDSEYLVIESK 33 (140)
Q Consensus 1 m~m~rILivDD~~----------------~~r~~l~~~L~~~~~v~~a~ 33 (140)
|+-||||||=-+. ....-+..+.++||.|..|+
T Consensus 1 m~~KkVLivlts~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~iAS 49 (243)
T 1rw7_A 1 MAPKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVS 49 (243)
T ss_dssp -CCCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9987499997677434688887463469999999999997798599988
No 270
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=28.62 E-value=26 Score=14.68 Aligned_cols=98 Identities=21% Similarity=0.192 Sum_probs=55.1
Q ss_pred CCCCEE--EEECCCHHHHHHHHHHHHC-CCEEEEE--CCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 998636--6773888999999999872-9989998--5979999999848998999861368877068999998433689
Q T0634 1 MSLKKI--LIIDQQDFSRIELKNFLDS-EYLVIES--KNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLK 75 (140)
Q Consensus 1 m~m~rI--LivDD~~~~r~~l~~~L~~-~~~v~~a--~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~ 75 (140)
|+|+|| -||---...+..+..+.+. ++.++.. .+.+.+-...++.+..-+ .+. ...+-+.+. .
T Consensus 1 m~m~kir~giIG~G~i~~~h~~~l~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~--------~~~---~~~ll~~~~-~ 68 (330)
T 3e9m_A 1 MSLDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVA--------YGS---YEELCKDET-I 68 (330)
T ss_dssp --CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCC--------BSS---HHHHHHCTT-C
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEE--------ECC---HHHHHHCCC-C
T ss_conf 9977848999988299999999997389918999988999999999998499825--------498---999971777-5
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 97178731678788999999669964865798889
Q T0634 76 NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRN 110 (140)
Q Consensus 76 ~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~ 110 (140)
+.-+|........+....++++|..=|+.||+...
T Consensus 69 D~V~I~tp~~~h~~~a~~al~~gk~vl~EKPla~~ 103 (330)
T 3e9m_A 69 DIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLN 103 (330)
T ss_dssp SEEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSS
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCC
T ss_conf 51113321011102113322433122203454322
No 271
>2chu_A CEUE, enterochelin uptake periplasmic binding protein; iron, mecam, SELF assembly, siderophore; HET: ECA; 2.40A {Campylobacter jejuni} SCOP: c.92.2.4
Probab=28.46 E-value=20 Score=15.39 Aligned_cols=16 Identities=38% Similarity=0.681 Sum_probs=11.1
Q ss_pred HHHHHHCCCCEEEEEC
Q ss_conf 9999848998999861
Q T0634 39 LEQIDHHHPDLVILDM 54 (140)
Q Consensus 39 l~~~~~~~pdlii~D~ 54 (140)
++.+....|||||..-
T Consensus 88 ~E~i~~l~PDlVi~~~ 103 (296)
T 2chu_A 88 FEAINALKPDLIIISG 103 (296)
T ss_dssp HHHHHHTCCSEEEECT
T ss_pred HHHHHHCCCCEEEECC
T ss_conf 9999855998088058
No 272
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica}
Probab=27.89 E-value=27 Score=14.60 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=44.2
Q ss_pred EEECCCHHHHHHHHHHHHCCCEEEEE----CCHHHHHHHHHHCCCCEEEEECCC-------------------CCCCCHH
Q ss_conf 67738889999999998729989998----597999999984899899986136-------------------8877068
Q T0634 7 LIIDQQDFSRIELKNFLDSEYLVIES----KNEKEALEQIDHHHPDLVILDMDI-------------------IGENSPN 63 (140)
Q Consensus 7 LivDD~~~~r~~l~~~L~~~~~v~~a----~~~~eal~~~~~~~pdlii~D~~l-------------------p~~dG~~ 63 (140)
+-.+|.+........+.+.|..+.+. .++.++++.+++..||+++=-=.. |+.+ .+
T Consensus 19 lr~~~~~~a~~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~p~~~iGaGTV~~~~~~~~a~~aGa~FivSP~~~-~~ 97 (217)
T 3lab_A 19 IVIDDLVHAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLT-PE 97 (217)
T ss_dssp ECCSCGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCC-HH
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCEEECCCCC-HH
T ss_conf 97899999999999999879988999689904999999999868997398997243689999997489999989999-99
Q ss_pred HHHHHHHCC--CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 999998433--689971787316787889999996699648657988
Q T0634 64 LCLKLKRSK--GLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFN 108 (140)
Q Consensus 64 ~~~~ir~~~--~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~ 108 (140)
+++.-++.. ...+ ++++-+-..+.+..+|+++|++-.-.=|.+
T Consensus 98 v~~~a~~~~ip~~~~--~~~iPG~~TptEi~~A~~~Ga~~vK~FPA~ 142 (217)
T 3lab_A 98 LIEKAKQVKLDGQWQ--GVFLPGVATASEVMIAAQAGITQLKCFPAS 142 (217)
T ss_dssp HHHHHHHHHHHCSCC--CEEEEEECSHHHHHHHHHTTCCEEEETTTT
T ss_pred HHHHHHHCCCCCCCC--CCCCCCCCCHHHHHHHHHCCCCEEEECCHH
T ss_conf 999999839984335--545378598899999998799979965043
No 273
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=27.62 E-value=27 Score=14.57 Aligned_cols=65 Identities=25% Similarity=0.223 Sum_probs=45.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CC---EEEEECCHHHHHHHHHH---------------CCCCEEEEECCCCCC-CCHH
Q ss_conf 6366773888999999999872-99---89998597999999984---------------899899986136887-7068
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EY---LVIESKNEKEALEQIDH---------------HHPDLVILDMDIIGE-NSPN 63 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~---~v~~a~~~~eal~~~~~---------------~~pdlii~D~~lp~~-dG~~ 63 (140)
-+|.-+|-++......+..++. |+ .-....++.+.+..+.+ .++|+|++|..=+.. +-++
T Consensus 86 g~i~tie~~~~~~~~A~~~~~~ag~~~~I~~~~g~A~e~L~~L~~~~~~~~~~~~~~~~~~~fD~VFiDadK~~Y~~y~~ 165 (239)
T 2hnk_A 86 GKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYP 165 (239)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
T ss_conf 86899965678899999999987996169999607999999988442333221001256776467999378877699999
Q ss_pred HHHHH
Q ss_conf 99999
Q T0634 64 LCLKL 68 (140)
Q Consensus 64 ~~~~i 68 (140)
.|..+
T Consensus 166 ~~~~l 170 (239)
T 2hnk_A 166 LILKL 170 (239)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99997
No 274
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii}
Probab=27.55 E-value=9.1 Score=17.58 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=7.7
Q ss_pred CCCCHHHHHHHH
Q ss_conf 798889999999
Q T0634 105 KPFNRNDLLSRI 116 (140)
Q Consensus 105 KP~~~~eL~~~i 116 (140)
.||+|+.+..||
T Consensus 281 e~F~p~~~~~ri 292 (432)
T 2v3c_C 281 EPFDPKKFISRL 292 (432)
T ss_dssp CBCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 776999999998
No 275
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris DP4}
Probab=27.34 E-value=17 Score=15.93 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=17.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 99863667738889999999998729
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDSE 26 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~~ 26 (140)
|||+||+||---+.=......+.+.+
T Consensus 1 M~MkkVvIIGgG~aGl~aA~~l~~~g 26 (472)
T 3iwa_A 1 MSLKHVVVIGAVALGPKAACRFKRLD 26 (472)
T ss_dssp ---CEEEEECCSSHHHHHHHHHHHHC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHCCC
T ss_conf 99798999998899999999997179
No 276
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae}
Probab=27.14 E-value=28 Score=14.52 Aligned_cols=33 Identities=18% Similarity=0.022 Sum_probs=24.0
Q ss_pred CCCCEEEEECCCH----------------HHHHHHHHHHHCCCEEEEEC
Q ss_conf 9986366773888----------------99999999987299899985
Q T0634 1 MSLKKILIIDQQD----------------FSRIELKNFLDSEYLVIESK 33 (140)
Q Consensus 1 m~m~rILivDD~~----------------~~r~~l~~~L~~~~~v~~a~ 33 (140)
|+-+|||||=-+. ....-+..+.+.||.|..|+
T Consensus 1 m~~kkvLivlt~~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~Vd~aS 49 (244)
T 3kkl_A 1 MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVS 49 (244)
T ss_dssp --CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9986599998368755678988573459999999999998799799984
No 277
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=27.05 E-value=28 Score=14.51 Aligned_cols=75 Identities=17% Similarity=0.071 Sum_probs=52.7
Q ss_pred EEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHH--CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 66773888999999999872-9989998597999999984--89989998613688770689999984336899717873
Q T0634 6 ILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDH--HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 6 ILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~--~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~l 82 (140)
|=+.=.++.....+..+|.. -|.+....++++.++.+++ +.+|++|+-..-| +-..+...+.+. .--.|+|++
T Consensus 12 I~lll~s~~Laq~c~qwL~~dRY~l~~~~s~~efle~Le~~~e~IDCLVl~~~~~--~l~~l~~qL~~~--GlLLPAVvl 87 (289)
T 1r8j_A 12 ICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAANP--SFRAVVQQLCFE--GVVVPAIVV 87 (289)
T ss_dssp EEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETTST--THHHHHHHHHHT--TCCCCEEEE
T ss_pred HEEEECCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCC--CCHHHHHHHHHC--CCCCCEEEE
T ss_conf 3024288899999998677885589854867799999984735776799970587--517999999965--853567997
Q ss_pred EC
Q ss_conf 16
Q T0634 83 FS 84 (140)
Q Consensus 83 ta 84 (140)
..
T Consensus 88 g~ 89 (289)
T 1r8j_A 88 GD 89 (289)
T ss_dssp SC
T ss_pred EC
T ss_conf 15
No 278
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=26.96 E-value=28 Score=14.50 Aligned_cols=71 Identities=20% Similarity=0.156 Sum_probs=41.5
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE-------CCC
Q ss_conf 999998489989998613688770---6899999843368997178731678788999999669964865-------798
Q T0634 38 ALEQIDHHHPDLVILDMDIIGENS---PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT-------KPF 107 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~dG---~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~-------KP~ 107 (140)
|++..--..|+++|+|--....|. .++.+.|++.....+.-+|++| ++ .+ .++. ||-.+. --=
T Consensus 166 aiARAl~~~p~ililDEpTs~LD~~t~~~i~~~l~~l~~~~~~TvI~it-H~-l~----~~~~-aD~Iivl~~G~Iv~~G 238 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLIT-QQ-LS----LAER-AHHILFLKEGSVCEQG 238 (271)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEEC-SC-HH----HHTT-CSEEEEEETTEEEEEE
T ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC-CC-HH----HHHH-CCEEEEEECCEEEEEC
T ss_conf 9998887589999980865457988999999999998860798999986-88-99----9985-9999999899999988
Q ss_pred CHHHHHHH
Q ss_conf 88999999
Q T0634 108 NRNDLLSR 115 (140)
Q Consensus 108 ~~~eL~~~ 115 (140)
++++|+..
T Consensus 239 t~~eLl~~ 246 (271)
T 2ixe_A 239 THLQLMER 246 (271)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHC
T ss_conf 99999878
No 279
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=26.71 E-value=29 Score=14.47 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=19.0
Q ss_pred EEECCCHHHHHHHHHHHHCCCEEEEE-CC---HHHHHHHHHHCCCCEE
Q ss_conf 67738889999999998729989998-59---7999999984899899
Q T0634 7 LIIDQQDFSRIELKNFLDSEYLVIES-KN---EKEALEQIDHHHPDLV 50 (140)
Q Consensus 7 LivDD~~~~r~~l~~~L~~~~~v~~a-~~---~~eal~~~~~~~pdli 50 (140)
+-+++.+....+...+.+.|..+++. -+ +.++++.+++..||++
T Consensus 32 i~~~~~~~a~~~a~al~~~Gi~~iEitl~tp~a~~~i~~l~~~~p~~~ 79 (225)
T 1mxs_A 32 ITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELC 79 (225)
T ss_dssp ECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSE
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEE
T ss_conf 974999999999999998699889995898049999999997589838
No 280
>3mgl_A Sulfate permease family protein; PSI2, MCSG, structural genomics, protein structure initiative; 2.25A {Vibrio cholerae o1 biovar el tor}
Probab=26.65 E-value=29 Score=14.47 Aligned_cols=69 Identities=7% Similarity=0.084 Sum_probs=42.2
Q ss_pred CHHHHHHHHHH--CCCCEEEEEC-CCCCCC--CHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 97999999984--8998999861-368877--06899999843368997178731678788999999669964865
Q T0634 34 NEKEALEQIDH--HHPDLVILDM-DIIGEN--SPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 34 ~~~eal~~~~~--~~pdlii~D~-~lp~~d--G~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
+.......+.+ .++..+|+|+ .++.+| |+..+..+.+.-...++.+++ ++- .+..+...-.+|..+.+.
T Consensus 34 ~a~~~~~~l~~~~~~~~~vIlD~~~v~~iD~tg~~~l~~~~~~~~~~g~~l~l-~~~-~~~v~~~l~~~gl~~~l~ 107 (130)
T 3mgl_A 34 AAETFERVMGSIQETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLI-SGA-NSRVSQKLVKAGIVKLVG 107 (130)
T ss_dssp HHHHHHHHHHHSSSCCSEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTCEEEE-ECC-CHHHHHHHHHTTHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE-EEC-CHHHHHHHHHCCCHHHCC
T ss_conf 39999999997247999999976389732678999999999999977998999-838-889999999869865548
No 281
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=26.47 E-value=29 Score=14.45 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=40.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHC--C-----CE---E-EEECCHHHHHHHHH--HCCCCEEEEECCCCC
Q ss_conf 6366773888999999999872--9-----98---9-99859799999998--489989998613688
Q T0634 4 KKILIIDQQDFSRIELKNFLDS--E-----YL---V-IESKNEKEALEQID--HHHPDLVILDMDIIG 58 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~--~-----~~---v-~~a~~~~eal~~~~--~~~pdlii~D~~lp~ 58 (140)
.+|-+||=|+..-...+..+.. + .. + +...||.+.+.... ...+|+||+|...+.
T Consensus 212 ~~V~~VEID~~Vve~a~k~f~~~~~~~~d~~r~~~v~vii~Da~~~l~~~~~~~~~YDvII~Dl~d~~ 279 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVP 279 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 45999726878999999863543002200833123423546789999864524684489997788887
No 282
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=26.45 E-value=29 Score=14.44 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=50.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE--C----CHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCC
Q ss_conf 99863667738889999999998729989998--5----97999999984899899986136887706899999843368
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDSEYLVIES--K----NEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGL 74 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~~~~v~~a--~----~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~ 74 (140)
|| -||-||----..+..+.. +.....+... . +...+-+...+..+..-. -.|--++ +. .+
T Consensus 1 m~-lri~iiG~G~~~~~~~~~-l~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~------y~~~~el---l~-~~-- 66 (337)
T 3ip3_A 1 MS-LKICVIGSSGHFRYALEG-LDEECSITGIAPGVPEEDLSKLEKAISEMNIKPKK------YNNWWEM---LE-KE-- 66 (337)
T ss_dssp -C-EEEEEECSSSCHHHHHTT-CCTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEE------CSSHHHH---HH-HH--
T ss_pred CC-CEEEEEECCHHHHHHHHH-HHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEE------CCCHHHH---HC-CC--
T ss_conf 93-379999179999999998-86369999999667886899999989984999704------0999999---65-99--
Q ss_pred CCCCEEEEECC--CCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHH
Q ss_conf 99717873167--87889999996699648657988--8999999999
Q T0634 75 KNVPLILLFSS--EHKEAIVNGLHSGADDYLTKPFN--RNDLLSRIEI 118 (140)
Q Consensus 75 ~~iPiI~lta~--~~~~~~~~a~~~Ga~dyl~KP~~--~~eL~~~i~~ 118 (140)
++-+|++..- ...+....|+++|..=|+.||+. ..++...++.
T Consensus 67 -~iD~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~~~~~~e~~~l~~~ 113 (337)
T 3ip3_A 67 -KPDILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSV 113 (337)
T ss_dssp -CCSEEEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHH
T ss_pred -CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf -98889996886377999999998899699957844431467888877
No 283
>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1
Probab=26.40 E-value=29 Score=14.44 Aligned_cols=68 Identities=18% Similarity=0.345 Sum_probs=32.8
Q ss_pred CCCCEEEEECCCCC-CCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE--------CCCCHHHHHHH
Q ss_conf 89989998613688-7706899999843368997178731678788999999669964865--------79888999999
Q T0634 45 HHPDLVILDMDIIG-ENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT--------KPFNRNDLLSR 115 (140)
Q Consensus 45 ~~pdlii~D~~lp~-~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~--------KP~~~~eL~~~ 115 (140)
..++++ +.+|- ..|+..++.+++. ++++-+ |+--+......|.++||+ |++ .-.+..++...
T Consensus 85 ~~~nv~---IKIP~t~~G~~a~~~L~~~----Gi~vn~-T~vfs~~Qa~~Aa~aga~-yispyvGR~~d~g~d~~~~~~~ 155 (223)
T 1wx0_A 85 IHPNIV---VKLPTTEEGLKACKRLSAE----GIKVNM-TLIFSANQALLAARAGAS-YVSPFLGRVDDISWDGGELLRE 155 (223)
T ss_dssp HCTTEE---EEEESSHHHHHHHHHHHHT----TCCEEE-EEECSHHHHHHHHHTTCS-EEEEBHHHHHHTTSCHHHHHHH
T ss_pred HCCCEE---EEECCCHHHHHHHHHHHHC----CCCCEE-EEECCHHHHHHHHHCCCC-EEEEECCHHHHCCCCCHHHHHH
T ss_conf 376649---9823457676999866424----997237-773689999999983996-9997400122024684779999
Q ss_pred HHHHHH
Q ss_conf 999999
Q T0634 116 IEIHLR 121 (140)
Q Consensus 116 i~~~lr 121 (140)
+...++
T Consensus 156 ~~~~~~ 161 (223)
T 1wx0_A 156 IVEMIQ 161 (223)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999998
No 284
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} PDB: 3k9e_A
Probab=26.04 E-value=18 Score=15.70 Aligned_cols=12 Identities=42% Similarity=0.617 Sum_probs=8.7
Q ss_pred CCCCEEEEECCC
Q ss_conf 998636677388
Q T0634 1 MSLKKILIIDQQ 12 (140)
Q Consensus 1 m~m~rILivDD~ 12 (140)
|||+||+++-+.
T Consensus 1 m~~~kil~iG~~ 12 (330)
T 3iq0_A 1 MSLSKVFTIGEI 12 (330)
T ss_dssp ---CEEEEESCC
T ss_pred CCCCCEEEECCC
T ss_conf 999959998920
No 285
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=25.73 E-value=30 Score=14.36 Aligned_cols=102 Identities=8% Similarity=-0.008 Sum_probs=48.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9986366773888999999999872-998999859799999998489989998613688770689999984336899717
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
|++-||.|+-==..=+..++.+.+. +++++.+.+-... ...+..+. .-.++ .......++-+
T Consensus 1 M~~irv~ivG~G~iG~~~~~~l~~~~d~elvgv~~r~~~----~~~~~~v~---------~~~d~----~~~~~~~DvVi 63 (320)
T 1f06_A 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT----LDTKTPVF---------DVADV----DKHADDVDVLF 63 (320)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSC----CSSSSCEE---------EGGGG----GGTTTTCSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHH----HCCCCCCC---------CCHHH----HHHCCCCCEEE
T ss_conf 971079998958999999999973999799999977767----57788860---------30669----97455899999
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHH
Q ss_conf 8731678788999999669964865798--889999999999
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYLTKPF--NRNDLLSRIEIH 119 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl~KP~--~~~eL~~~i~~~ 119 (140)
+...+....+....++++|.+-+-++|. ...++..++...
T Consensus 64 ~~tp~~~~~~~~~~~L~~G~~vV~~~~~~~~~~e~~~~ld~~ 105 (320)
T 1f06_A 64 LCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEA 105 (320)
T ss_dssp ECSCTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH
T ss_conf 899862679999999986998998887534317899999999
No 286
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=25.70 E-value=30 Score=14.36 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=35.6
Q ss_pred CC-EEEEECCCHHHHHHHH-HHHHCCCEEEEECC----HHHHHHHHHHCCCCEEEEECC
Q ss_conf 86-3667738889999999-99872998999859----799999998489989998613
Q T0634 3 LK-KILIIDQQDFSRIELK-NFLDSEYLVIESKN----EKEALEQIDHHHPDLVILDMD 55 (140)
Q Consensus 3 m~-rILivDD~~~~r~~l~-~~L~~~~~v~~a~~----~~eal~~~~~~~pdlii~D~~ 55 (140)
|+ ||||.--.=.+-..+. .++++|+.|..... ..+.+..+.....+++..|+.
T Consensus 10 mk~KIlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~~~~v~~d~~ 68 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELD 68 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEEECC
T ss_conf 99839998999589999999999786979999789642366787631289489992043
No 287
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics, protein structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=25.54 E-value=30 Score=14.34 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=16.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 998636677388899999999987
Q T0634 1 MSLKKILIIDQQDFSRIELKNFLD 24 (140)
Q Consensus 1 m~m~rILivDD~~~~r~~l~~~L~ 24 (140)
|||+||+||---+.=......+.+
T Consensus 1 MsmKkVvIIGgG~AGl~aA~~l~~ 24 (449)
T 3kd9_A 1 MSLKKVVIIGGGAAGMSAASRVKR 24 (449)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHC
T ss_conf 998809998988999999999980
No 288
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=25.50 E-value=30 Score=14.33 Aligned_cols=83 Identities=10% Similarity=0.007 Sum_probs=51.7
Q ss_pred ECCHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEE-ECCCCH
Q ss_conf 8597999999984-89989998613688770689999984336899717873167878899999966996486-579888
Q T0634 32 SKNEKEALEQIDH-HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYL-TKPFNR 109 (140)
Q Consensus 32 a~~~~eal~~~~~-~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl-~KP~~~ 109 (140)
.-|..+|++.++. ..+++.++.--+|..+-..-++.+++.. .+||..=-+..+.....++++.|+-|++ .||...
T Consensus 209 ~w~~~~A~~~~~~l~~~~~~~iEeP~~~~~~~~~~~~l~~~~---~iPia~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~ 285 (392)
T 3ddm_A 209 GWDLPRARQMAQRLGPAQLDWLEEPLRADRPAAEWAELAQAA---PMPLAGGENIAGVAAFETALAARSLRVMQPDLAKW 285 (392)
T ss_dssp CCCHHHHHHHHHHHGGGCCSEEECCSCTTSCHHHHHHHHHHC---SSCEEECTTCCSHHHHHHHHHHTCEEEECCCTTTT
T ss_pred CCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHC---CCCEECCCCCCCHHHHHHHHHCCCCCEECCCCCCC
T ss_conf 989999999999850259872857888788166899999746---98775487767999999999849987524774101
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q T0634 110 NDLLSRIE 117 (140)
Q Consensus 110 ~eL~~~i~ 117 (140)
.=+....+
T Consensus 286 GGi~~~~~ 293 (392)
T 3ddm_A 286 GGFSGCLP 293 (392)
T ss_dssp THHHHHHH
T ss_pred CCHHHHHH
T ss_conf 79999999
No 289
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} PDB: 3hf3_A*
Probab=25.39 E-value=30 Score=14.32 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=45.1
Q ss_pred HHHHHHH---HHHCCCCEEEEECC-------CCCCC--CHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 7999999---98489989998613-------68877--068999998433689971787316787889999996699648
Q T0634 35 EKEALEQ---IDHHHPDLVILDMD-------IIGEN--SPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDY 102 (140)
Q Consensus 35 ~~eal~~---~~~~~pdlii~D~~-------lp~~d--G~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dy 102 (140)
.+++++. +.+...|++-+... .+... -..+.+.+|+.- .+|++..-...+++...++++.|..|+
T Consensus 238 ~ee~~~~~~~l~~~g~d~~~~s~~~~~~~~~~~~~~g~~~~~~~~ik~~~---~~pvi~~G~i~~~~~ae~~l~~g~~D~ 314 (349)
T 3hgj_A 238 LEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRV---GLRTGAVGLITTPEQAETLLQAGSADL 314 (349)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHH---CCEEEECSSCCCHHHHHHHHHTTSCSE
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCCH
T ss_conf 89999999999973988687414643133345667543368999999876---986899889399999999998799301
Q ss_pred EE
Q ss_conf 65
Q T0634 103 LT 104 (140)
Q Consensus 103 l~ 104 (140)
+.
T Consensus 315 V~ 316 (349)
T 3hgj_A 315 VL 316 (349)
T ss_dssp EE
T ss_pred HH
T ss_conf 49
No 290
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=25.32 E-value=18 Score=15.70 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=35.2
Q ss_pred CCCCEEEEECCCHH----HHHHHHHHHH-CCCEEEEECCHH-----HHHH-----HHHH--CCCCEEEEE-CCCCCCCCH
Q ss_conf 99863667738889----9999999987-299899985979-----9999-----9984--899899986-136887706
Q T0634 1 MSLKKILIIDQQDF----SRIELKNFLD-SEYLVIESKNEK-----EALE-----QIDH--HHPDLVILD-MDIIGENSP 62 (140)
Q Consensus 1 m~m~rILivDD~~~----~r~~l~~~L~-~~~~v~~a~~~~-----eal~-----~~~~--~~pdlii~D-~~lp~~dG~ 62 (140)
|+|+||+++=-+.. .......+.+ .+|.+..++... .++. .+.. ..+|++++- -..+..+--
T Consensus 1 m~Mkkv~~ll~dgf~d~E~~~~~~~L~~~~~~~v~~vs~~~~V~s~~Gl~v~~d~~~~~~~~~~d~lvipGg~~~~~~~~ 80 (206)
T 3f5d_A 1 MSLKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSWSNDNK 80 (206)
T ss_dssp --CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCCCCCCH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCH
T ss_conf 98868999978996789999999998234884999996899777620488831322246865174999788665555899
Q ss_pred HHHHHHHHCCCCCCCCEEEE
Q ss_conf 89999984336899717873
Q T0634 63 NLCLKLKRSKGLKNVPLILL 82 (140)
Q Consensus 63 ~~~~~ir~~~~~~~iPiI~l 82 (140)
.+++.||+... ...+|..+
T Consensus 81 ~l~~~l~~~~~-~~~~i~aI 99 (206)
T 3f5d_A 81 KLLHFVKTAFQ-KNIPIAAI 99 (206)
T ss_dssp HHHHHHHHHHH-TTCCEEEE
T ss_pred HHHHHHHHHHH-HCCEEEEC
T ss_conf 99999999987-29989842
No 291
>1wo8_A Methylglyoxal synthase; structural genomics, riken structural genomics/proteomics initiative, RSGI, lyase; 1.70A {Thermus thermophilus HB8} SCOP: c.24.1.2
Probab=25.21 E-value=30 Score=14.30 Aligned_cols=66 Identities=8% Similarity=0.065 Sum_probs=29.2
Q ss_pred CCEE-EEECC-CHH-HHHHHHHHHH--CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHC
Q ss_conf 8636-67738-889-9999999987--29989998597999999984899899986136887706899999843
Q T0634 3 LKKI-LIIDQ-QDF-SRIELKNFLD--SEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRS 71 (140)
Q Consensus 3 m~rI-LivDD-~~~-~r~~l~~~L~--~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~ 71 (140)
|+.| ||..| +.. .....+.+.+ .+|.+.....-.+.++ +...+.+-.+ ...|......+...|++.
T Consensus 1 ~~~ialiAhD~~K~~~~~~~~~~~~l~~gf~l~AT~GTa~~L~--~~~g~~v~~v-~~~~~gg~~~i~d~I~~g 71 (126)
T 1wo8_A 1 MKALALIAHDAKKDEMVAFCLRHKDVLARYPLLATGTTGARIQ--EATGLAVERV-LSGPLGGDLQIGARVAEG 71 (126)
T ss_dssp CCEEEEEECGGGHHHHHHHHHHTHHHHTTSCEEECHHHHHHHH--HHHCCCCEEC-CCTTTTHHHHHHHHHHTT
T ss_pred CCEEEEEHHHCCHHHHHHHHHHHHHHHCCEEEEECHHHHHHHH--HHCCCEEEEE-ECCCCCCCCCHHHHHHCC
T ss_conf 9468986432672999999999999854768995334899999--8359568999-417889999989999849
No 292
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomics, NPPSFA; 2.30A {Methanocaldococcus jannaschii DSM2661}
Probab=25.18 E-value=30 Score=14.30 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=43.5
Q ss_pred HHHHHHHHHCCCCCCCCEEEEE--CCCCHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHHH
Q ss_conf 6899999843368997178731--678788999999669964865-----798889999999999999
Q T0634 62 PNLCLKLKRSKGLKNVPLILLF--SSEHKEAIVNGLHSGADDYLT-----KPFNRNDLLSRIEIHLRT 122 (140)
Q Consensus 62 ~~~~~~ir~~~~~~~iPiI~lt--a~~~~~~~~~a~~~Ga~dyl~-----KP~~~~eL~~~i~~~lr~ 122 (140)
+++++.+++. ..+||+..+ +-..+.+.-.+++.|++..++ |-=||......|-.....
T Consensus 229 ~eLv~~v~e~---grLPVVnFAaGGIaTPADAALmMqLGaDGVFVGSGIFkS~dP~k~ArAIV~Av~~ 293 (330)
T 2yzr_A 229 YEVLLEVKKL---GRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYN 293 (330)
T ss_dssp HHHHHHHHHH---TSCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH---CCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 8999999983---8897377545787988999999855987799742001589989999999999964
No 293
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=25.17 E-value=30 Score=14.30 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=44.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CC---EEEEECCHHHHHHHHH-----HCCCCEEEEECCCCCC-CCHHHHHHH
Q ss_conf 6366773888999999999872-99---8999859799999998-----4899899986136887-706899999
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EY---LVIESKNEKEALEQID-----HHHPDLVILDMDIIGE-NSPNLCLKL 68 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~---~v~~a~~~~eal~~~~-----~~~pdlii~D~~lp~~-dG~~~~~~i 68 (140)
-+|.-+|-++......+..++. |+ .-....++.+.+..+. ..++|+|++|-.=... +-++.|..+
T Consensus 105 g~v~tie~~~~~~~~A~~~~~~ag~~~~I~~~~g~a~e~L~~l~~~~~~~~~fD~vFiDadK~~y~~y~e~~~~l 179 (247)
T 1sui_A 105 GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDL 179 (247)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHH
T ss_conf 469998228889999999998722122488761678989999984535577611798516466558999999745
No 294
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=25.14 E-value=30 Score=14.29 Aligned_cols=66 Identities=9% Similarity=0.100 Sum_probs=44.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHC------------CCEE-EEECCHHHHHHHHHHCCCCEEEEECCCCCCC-----CHHHH
Q ss_conf 6366773888999999999872------------9989-9985979999999848998999861368877-----06899
Q T0634 4 KKILIIDQQDFSRIELKNFLDS------------EYLV-IESKNEKEALEQIDHHHPDLVILDMDIIGEN-----SPNLC 65 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~------------~~~v-~~a~~~~eal~~~~~~~pdlii~D~~lp~~d-----G~~~~ 65 (140)
.+|-+||=|+..-...+.++.. .-.+ +...||.+-+. ....+|+||+|..-|... ..++.
T Consensus 99 ~~v~~VEiD~~Vi~~a~~~~~~~~~~~~~~~~~~d~rv~i~~~D~~~~l~--~~~~yDvIi~D~~~~~~~~~~L~t~eF~ 176 (281)
T 1mjf_A 99 DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK--NNRGFDVIIADSTDPVGPAKVLFSEEFY 176 (281)
T ss_dssp SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH--HCCCEEEEEEECCCCC-----TTSHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECHHHHHHH--CCCCCCEEEEECCCCCCCCCCCCCHHHH
T ss_conf 64999955999999999841114420334303579967999325899973--2888788999689987766545579999
Q ss_pred HHHHHC
Q ss_conf 999843
Q T0634 66 LKLKRS 71 (140)
Q Consensus 66 ~~ir~~ 71 (140)
+.+++.
T Consensus 177 ~~~~~~ 182 (281)
T 1mjf_A 177 RYVYDA 182 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999865
No 295
>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, alternative splicing, disease mutation, glycosyltransferase, lyase; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ...
Probab=24.66 E-value=31 Score=14.24 Aligned_cols=104 Identities=11% Similarity=0.036 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHCC-CEEEE--ECCHHHHHHHHHHCCCCEEEEECCCCCC--CCHHHHHHHHHCCCCCCCCEEEEE-C
Q ss_conf 8889999999998729-98999--8597999999984899899986136887--706899999843368997178731-6
Q T0634 11 QQDFSRIELKNFLDSE-YLVIE--SKNEKEALEQIDHHHPDLVILDMDIIGE--NSPNLCLKLKRSKGLKNVPLILLF-S 84 (140)
Q Consensus 11 D~~~~r~~l~~~L~~~-~~v~~--a~~~~eal~~~~~~~pdlii~D~~lp~~--dG~~~~~~ir~~~~~~~iPiI~lt-a 84 (140)
-+|....++..+-... --++. ..+.+++++.+..-.|.+.++-+.+|-. -|.++++.++.-....+.||+.=- =
T Consensus 16 ~~p~~~~l~~~~~~Kks~LivALD~~~~~eal~l~~~l~~~v~~iKiG~~l~~~~G~~~i~~l~~~~~~~~~~IflDlKl 95 (260)
T 3eww_A 16 IHPVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFENRKF 95 (260)
T ss_dssp CCHHHHHHHHHHHHHTCCEEEECCCSCHHHHHHHHHHHGGGCSEEEECGGGCTTCCHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99699999999984368789996679999999999985885659998879973499899999999987369748842001
Q ss_pred CCCHHHHHHHHHC-------CCCEEEECCCCHHHHHH
Q ss_conf 7878899999966-------99648657988899999
Q T0634 85 SEHKEAIVNGLHS-------GADDYLTKPFNRNDLLS 114 (140)
Q Consensus 85 ~~~~~~~~~a~~~-------Ga~dyl~KP~~~~eL~~ 114 (140)
++-+.+..+++.. ||+-.-.-++...+.+.
T Consensus 96 ~DIpnTv~k~~~~~~~~~~~~ad~vTvh~~~G~~~i~ 132 (260)
T 3eww_A 96 ADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVK 132 (260)
T ss_dssp CSCHHHHHHHHHCTTTCGGGTCSEEEEESTTCTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
T ss_conf 5820689999999998641555158874378879999
No 296
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=24.54 E-value=31 Score=14.22 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=41.3
Q ss_pred EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 899985979999999848998999861368877068999998433689971787316787889999996699648
Q T0634 28 LVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDY 102 (140)
Q Consensus 28 ~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dy 102 (140)
..+++.+.+++.+.+. ..+|.|.+|= |.-.+--++++.++.. .++ ..|..|+.-..+...+.-+.|+|-+
T Consensus 185 I~vEv~~~~ea~~a~~-~g~d~i~LDn-~~~~~~~~~v~~~~~~--~~~-v~ieaSGGI~~~ni~~ya~~GVD~i 254 (273)
T 2b7n_A 185 IEIECESFEEAKNAMN-AGADIVMCDN-LSVLETKEIAAYRDAH--YPF-VLLEASGNISLESINAYAKSGVDAI 254 (273)
T ss_dssp EEEEESSHHHHHHHHH-HTCSEEEEET-CCHHHHHHHHHHHHHH--CTT-CEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEEECCHHHHHHHHH-CCCCEEECCC-CCHHHHHHHHHHHHCC--CCC-EEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 9999768999999984-3886881278-8877899999998365--886-7999989999999999997699999
No 297
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=23.95 E-value=32 Score=14.15 Aligned_cols=96 Identities=13% Similarity=0.235 Sum_probs=46.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEE----CCHHHHHHHHHHCCCCEEEEECCC-------------------CCCCCH
Q ss_conf 667738889999999998729989998----597999999984899899986136-------------------887706
Q T0634 6 ILIIDQQDFSRIELKNFLDSEYLVIES----KNEKEALEQIDHHHPDLVILDMDI-------------------IGENSP 62 (140)
Q Consensus 6 ILivDD~~~~r~~l~~~L~~~~~v~~a----~~~~eal~~~~~~~pdlii~D~~l-------------------p~~dG~ 62 (140)
|+-++|.+........+.+.|..+++. .++.++++.+.+..||+++=-=.. |+.+ .
T Consensus 21 vlr~~~~~~a~~~~~al~~~Gi~~iEItl~t~~a~~~i~~l~~~~p~~~vGaGTV~~~e~~~~a~~aGa~FivSP~~~-~ 99 (214)
T 1wbh_A 21 VIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLT-E 99 (214)
T ss_dssp EECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESSCC-H
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCC-H
T ss_conf 997899999999999999879988999479867999999999977986245574454899999998277877779898-9
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 8999998433689971787316787889999996699648657988
Q T0634 63 NLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFN 108 (140)
Q Consensus 63 ~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~ 108 (140)
++++.-++ .++| ++-+-..+.+..+|+++|++-.-.=|.+
T Consensus 100 ~v~~~a~~----~~i~--~iPGv~TpsEi~~A~~~G~~~vKlFPA~ 139 (214)
T 1wbh_A 100 PLLKAATE----GTIP--LIPGISTVSELMLGMDYGLKEFKFFPAE 139 (214)
T ss_dssp HHHHHHHH----SSSC--EEEEESSHHHHHHHHHTTCCEEEETTTT
T ss_pred HHHHHHHH----CCCC--CCCCCCCHHHHHHHHHCCCCEEEEEECH
T ss_conf 99999985----5998--6588186799999998799979974024
No 298
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha- beta crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=23.95 E-value=32 Score=14.15 Aligned_cols=103 Identities=12% Similarity=0.112 Sum_probs=55.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHHCCC---CEEEEECCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 86366773888999999999872---9989998597999999984899---89998613688770689999984336899
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS---EYLVIESKNEKEALEQIDHHHP---DLVILDMDIIGENSPNLCLKLKRSKGLKN 76 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~---~~~v~~a~~~~eal~~~~~~~p---dlii~D~~lp~~dG~~~~~~ir~~~~~~~ 76 (140)
-.+|+||||....-...+.++.. .+.-...-+.++|.+.+.+..+ .+.++= .+--++++.++... .
T Consensus 27 ~~~IiVvdD~~A~D~~~k~~l~ma~P~gvk~~i~sve~a~~~~~~~~~~~~~v~il~-----~~~~d~~~l~~~g~---~ 98 (164)
T 1nrz_A 27 AQRIIICNDDVFNDEVRRTLLRQAAPPGMKVNVVSLEKAVAVYHNPQYQDETVFYLF-----TNPHDVLTMVRQGV---Q 98 (164)
T ss_dssp CSEEEEECHHHHTCHHHHHHHHHTCCTTCEEEEECHHHHHHHHTCGGGTTCEEEEEE-----SSHHHHHHHHTTTC---C
T ss_pred CCEEEEECCHHCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCCCEEEEEE-----CCHHHHHHHHHCCC---C
T ss_conf 999999762221899999999951799867999749999999857665786599998-----99999999997399---9
Q ss_pred CCEEEEEC-----------------CCCHHHHHHHHHCCCCEEEE-----CCCCHHHHH
Q ss_conf 71787316-----------------78788999999669964865-----798889999
Q T0634 77 VPLILLFS-----------------SEHKEAIVNGLHSGADDYLT-----KPFNRNDLL 113 (140)
Q Consensus 77 iPiI~lta-----------------~~~~~~~~~a~~~Ga~dyl~-----KP~~~~eL~ 113 (140)
++-|-+-+ ..+.+...+..+.|+.=|+. +|.+..+++
T Consensus 99 i~~vNvG~~~~~~g~~~i~~~v~l~~ee~~~lk~l~~~Gv~v~~q~vP~d~~~~l~~~l 157 (164)
T 1nrz_A 99 IATLNIGGMAWRPGKKQLTKAVSLDPQDIQAFRELDKLGVKLDLRVVASDPSVNILDKI 157 (164)
T ss_dssp CSEEEEEEBCCCTTCEEEETTEEECHHHHHHHHHHHHTTCEEEECSSTTSCCBCHHHHH
T ss_pred CCEEEECCCCCCCCCEEEECCEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHH
T ss_conf 88899899878899779736450199999999999977987999989599702699999
No 299
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=23.91 E-value=15 Score=16.13 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=42.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC---C-C---EE-EEECCHHHHHHHHHHCCCCEEEEECCCCCCC-----CHHHHHHHH
Q ss_conf 86366773888999999999872---9-9---89-9985979999999848998999861368877-----068999998
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS---E-Y---LV-IESKNEKEALEQIDHHHPDLVILDMDIIGEN-----SPNLCLKLK 69 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~---~-~---~v-~~a~~~~eal~~~~~~~pdlii~D~~lp~~d-----G~~~~~~ir 69 (140)
..+|-+||=|+..-...+.++.. + + .+ +...||.+.+.. ....+|+||+|..-|... ..++.+.++
T Consensus 107 ~~~v~~VEID~~Vi~~a~~~~~~~~~~~~~dprv~v~~~Da~~~l~~-~~~~yDvIi~D~~d~~~~~~~L~t~eF~~~~~ 185 (294)
T 3adn_A 107 VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ-TSQTFDVIISDCTDPIGPGESLFTSAFYEGCK 185 (294)
T ss_dssp CCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---C-CCCCEEEEEECC----------CCHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHH-CCCCCCEEEEECCCCCCCCHHHCCHHHHHHHH
T ss_conf 54389994599999999744841124556787689984589999973-68877789993787667744435899999998
Q ss_pred HC
Q ss_conf 43
Q T0634 70 RS 71 (140)
Q Consensus 70 ~~ 71 (140)
+.
T Consensus 186 ~~ 187 (294)
T 3adn_A 186 RC 187 (294)
T ss_dssp HT
T ss_pred HH
T ss_conf 77
No 300
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondrial, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=23.79 E-value=32 Score=14.13 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCC-------------C-------CHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 999999984899899986136887-------------7-------06899999843368997178731678788999999
Q T0634 36 KEALEQIDHHHPDLVILDMDIIGE-------------N-------SPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGL 95 (140)
Q Consensus 36 ~eal~~~~~~~pdlii~D~~lp~~-------------d-------G~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~ 95 (140)
.+..+.+.+...|-+++--...+. + +++.++.+++.-. ..+|||-.-+-.+.++..+.+
T Consensus 314 ~~i~~~~~~~g~dgii~~Ntt~~~~~~~~~~~~~GGLSG~~l~~~al~~v~~i~~~~~-~~ipIIGvGGI~s~~Da~e~i 392 (443)
T 1tv5_A 314 KEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTN-KQIPIIASGGIFSGLDALEKI 392 (443)
T ss_dssp HHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTT-TCSCEEEESSCCSHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHH
T ss_conf 9999998750651243034434665421124555664415468999999999999708-997299989979999999999
Q ss_pred HCCCCEEEE
Q ss_conf 669964865
Q T0634 96 HSGADDYLT 104 (140)
Q Consensus 96 ~~Ga~dyl~ 104 (140)
.+||+-.=.
T Consensus 393 ~AGAslVQv 401 (443)
T 1tv5_A 393 EAGASVCQL 401 (443)
T ss_dssp HTTEEEEEE
T ss_pred HCCCCHHHH
T ss_conf 859979986
No 301
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=23.78 E-value=32 Score=14.13 Aligned_cols=101 Identities=12% Similarity=0.192 Sum_probs=47.2
Q ss_pred CC-CCEEEEEC--CCHH---HHHHHHHHHH-CCCEEEEECCHHH--HHHH-----HH---------------HCCCCEEE
Q ss_conf 99-86366773--8889---9999999987-2998999859799--9999-----98---------------48998999
Q T0634 1 MS-LKKILIID--QQDF---SRIELKNFLD-SEYLVIESKNEKE--ALEQ-----ID---------------HHHPDLVI 51 (140)
Q Consensus 1 m~-m~rILivD--D~~~---~r~~l~~~L~-~~~~v~~a~~~~e--al~~-----~~---------------~~~pdlii 51 (140)
|+ -+||+||- +.+. ...-+...|+ .+..+....+... +... +. ....|+||
T Consensus 1 M~~~r~i~lv~~~~k~~a~~~a~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi 80 (307)
T 1u0t_A 1 MTAHRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVL 80 (307)
T ss_dssp ----CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEE
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 99888999997199989999999999999978998999841021046544672034422764210255434445655899
Q ss_pred EECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 8613688770689999984336899717873167878899999966996486579888999999999999
Q T0634 52 LDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
Q Consensus 52 ~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr 121 (140)
+ -|+||.= ++..+.... .++||+-+.. |--+||+- ++++++...+...+.
T Consensus 81 ~----lGGDGT~-L~a~~~~~~-~~~Pilgin~-------------G~lGFL~~-~~~~~~~~~l~~~~~ 130 (307)
T 1u0t_A 81 V----LGGDGTF-LRAAELARN-ASIPVLGVNL-------------GRIGFLAE-AEAEAIDAVLEHVVA 130 (307)
T ss_dssp E----EECHHHH-HHHHHHHHH-HTCCEEEEEC-------------SSCCSSCS-EEGGGHHHHHHHHHH
T ss_pred E----ECCCHHH-HHHHHHHCC-CCCCEEEECC-------------CCCEEEEC-CCHHHHHHHHHHHHH
T ss_conf 9----7587789-999997503-5883798578-------------83005212-475678999999873
No 302
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
Probab=23.71 E-value=32 Score=14.12 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=46.0
Q ss_pred EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 8999859799999998489989998613688770689999984336899717873167878899999966996486
Q T0634 28 LVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 28 ~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl 103 (140)
..+++.+-+++.+.+. ..+|.|.+| +|.-.+=-+.++.+|.. .+++ .|..|+.-+.+...+.-+.|+|-+-
T Consensus 200 I~vEv~~l~ea~~a~~-~g~d~I~LD-n~s~e~~~~~v~~l~~~--~~~v-~IeaSGGI~~~ni~~ya~~GVD~is 270 (299)
T 2jbm_A 200 VEVECSSLQEAVQAAE-AGADLVLLD-NFKPEELHPTATVLKAQ--FPSV-AVEASGGITLDNLPQFCGPHIDVIS 270 (299)
T ss_dssp EEEEESSHHHHHHHHH-TTCSEEEEE-SCCHHHHHHHHHHHHHH--CTTS-EEEEESSCCTTTHHHHCCTTCCEEE
T ss_pred EEEEECCHHHHHHHHH-CCCCEEEEC-CCCHHHHHHHHHHHHCC--CCCE-EEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 9984178899999997-399899985-99999999999997464--8966-9999899989999999974999998
No 303
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A
Probab=23.68 E-value=32 Score=14.12 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=38.2
Q ss_pred HHHHHHHHHCCC-CEEEEECCCCCC-CC--HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH---CCCCEEEE----
Q ss_conf 999999984899-899986136887-70--68999998433689971787316787889999996---69964865----
Q T0634 36 KEALEQIDHHHP-DLVILDMDIIGE-NS--PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLH---SGADDYLT---- 104 (140)
Q Consensus 36 ~eal~~~~~~~p-dlii~D~~lp~~-dG--~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~---~Ga~dyl~---- 104 (140)
.+.++.+.+..+ .++++|+.--|+ .| +++++.+++ ...+|+|.--+-.+.++..+.-+ .|++..+.
T Consensus 149 ~~~~~~~~~~g~~eiiitdi~~dGt~~G~d~~l~~~i~~---~~~~pvi~~GGi~s~~Di~~l~~l~~~gi~gvivgsal 225 (244)
T 1vzw_A 149 YETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCA---ATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKAL 225 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHH---TCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred CCHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHH---CCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEHHHH
T ss_conf 002356654055057875201455224661777888875---28988899899999999999976414793166565898
Q ss_pred --CCCCHHHHHH
Q ss_conf --7988899999
Q T0634 105 --KPFNRNDLLS 114 (140)
Q Consensus 105 --KP~~~~eL~~ 114 (140)
+-++.+|+..
T Consensus 226 ~~g~i~~~e~~~ 237 (244)
T 1vzw_A 226 YAKAFTLEEALE 237 (244)
T ss_dssp HTTSSCHHHHHH
T ss_pred HCCCCCHHHHHH
T ss_conf 879989999999
No 304
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=23.47 E-value=33 Score=14.10 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=29.3
Q ss_pred CCCEEEEEC--CCCHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHH
Q ss_conf 971787316--78788999999669964865798--889999999999
Q T0634 76 NVPLILLFS--SEHKEAIVNGLHSGADDYLTKPF--NRNDLLSRIEIH 119 (140)
Q Consensus 76 ~iPiI~lta--~~~~~~~~~a~~~Ga~dyl~KP~--~~~eL~~~i~~~ 119 (140)
++=+|+++. ....+...+++++|..=|+.||+ +.++....++..
T Consensus 65 ~iD~V~I~tp~~~H~~~~~~al~~gkhV~~EKP~a~~~~e~~~l~~~a 112 (345)
T 3f4l_A 65 DVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALA 112 (345)
T ss_dssp TEEEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCHHCCCHHHHHHCCCHHHHCCCCCCHHHHHCCCCEECC
T ss_conf 988998504310000056776321023221433210122100000000
No 305
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17
Probab=23.42 E-value=33 Score=14.09 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=46.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHC--C------CEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCC--------CHHHHHH
Q ss_conf 6366773888999999999872--9------9899985979999999848998999861368877--------0689999
Q T0634 4 KKILIIDQQDFSRIELKNFLDS--E------YLVIESKNEKEALEQIDHHHPDLVILDMDIIGEN--------SPNLCLK 67 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~--~------~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~d--------G~~~~~~ 67 (140)
.+|-+||=++..-...+..+.. + -.-+...||.+.+... ...+|+||+|..-|-.+ ..++.+.
T Consensus 102 ~~v~~VEiDp~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~-~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~ 180 (314)
T 1uir_A 102 EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-EERYDVVIIDLTDPVGEDNPARLLYTVEFYRL 180 (314)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHHHHC-CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 55998458889999998628523456456886489987099998644-76600689747676566751555502999999
Q ss_pred HHHCC
Q ss_conf 98433
Q T0634 68 LKRSK 72 (140)
Q Consensus 68 ir~~~ 72 (140)
+++.-
T Consensus 181 ~~~~L 185 (314)
T 1uir_A 181 VKAHL 185 (314)
T ss_dssp HHHTE
T ss_pred HHHHC
T ss_conf 99853
No 306
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics consortium, SGC, cytoplasm, developmental protein; 2.21A {Homo sapiens}
Probab=23.42 E-value=33 Score=14.09 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHCCCE-EEEECC---HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECC--
Q ss_conf 88999999999872998-999859---799999998489989998613688770689999984336899717873167--
Q T0634 12 QDFSRIELKNFLDSEYL-VIESKN---EKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSS-- 85 (140)
Q Consensus 12 ~~~~r~~l~~~L~~~~~-v~~a~~---~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~-- 85 (140)
++..+..+..++...-. +.+..+ ...|.+++.+...+....++.. ..++-++-..+++....+.+|.|++-+.
T Consensus 3 ~e~~~~~i~~~i~~~~VvIysk~~Cp~C~~ak~lL~~~gi~~~~~eid~-~~d~~~~~~~l~~~tg~~tvPqIfi~g~~I 81 (114)
T 3h8q_A 3 REELRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQ-VDDGARVQEVLSEITNQKTVPNIFVNKVHV 81 (114)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTT-STTHHHHHHHHHHHHSCCSSCEEEETTEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEE-CCCCCHHHHHHHHHCCCCCCCEEEECCEEE
T ss_conf 4899999999984498999988989679999999998499852531010-377402547898853477774699999898
Q ss_pred CCHHHHHHHHHCC
Q ss_conf 8788999999669
Q T0634 86 EHKEAIVNGLHSG 98 (140)
Q Consensus 86 ~~~~~~~~a~~~G 98 (140)
+.-++..+..+.|
T Consensus 82 GG~~el~~l~~~G 94 (114)
T 3h8q_A 82 GGCDQTFQAYQSG 94 (114)
T ss_dssp ESHHHHHHHHHHT
T ss_pred ECHHHHHHHHHCC
T ss_conf 3689999999869
No 307
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=23.41 E-value=33 Score=14.09 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=49.7
Q ss_pred CEEEEECCCHHHHHHHHHHHH-C-CCEEEEECCHH-HHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 636677388899999999987-2-99899985979-99999984899899986136887706899999843368997178
Q T0634 4 KKILIIDQQDFSRIELKNFLD-S-EYLVIESKNEK-EALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~-~-~~~v~~a~~~~-eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI 80 (140)
-||-||-=-..-+......+. . ++.++.+.+.. +..+ +.-++.-+ .+. .+.+-+++ ++-++
T Consensus 8 ikigiIG~G~~g~~~h~~~l~~~~~~~lvav~d~~~~~~~---~~~~~~~~-------~~~---~~ell~~~---~iD~V 71 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK---RDLPDVTV-------IAS---PEAAVQHP---DVDLV 71 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---HHCTTSEE-------ESC---HHHHHTCT---TCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH---HHCCCCCE-------ECC---HHHHHCCC---CCCEE
T ss_conf 7599994809999999999971989589999889999999---64778965-------899---99995699---99989
Q ss_pred EE-EC-CCCHHHHHHHHHCCCCEEEECCCCH--HHHHHHHH
Q ss_conf 73-16-7878899999966996486579888--99999999
Q T0634 81 LL-FS-SEHKEAIVNGLHSGADDYLTKPFNR--NDLLSRIE 117 (140)
Q Consensus 81 ~l-ta-~~~~~~~~~a~~~Ga~dyl~KP~~~--~eL~~~i~ 117 (140)
++ |. ....+....|+++|..=|+.||+.. ++....++
T Consensus 72 ~I~tp~~~H~~~~~~al~~GkhVl~EKPla~~~~e~~~l~~ 112 (364)
T 3e82_A 72 VIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIA 112 (364)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 98488788788888898549869853883021689998677
No 308
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A
Probab=23.37 E-value=33 Score=14.08 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=11.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCC--CCHHHHHHHH
Q ss_conf 999999984899899986136887--7068999998
Q T0634 36 KEALEQIDHHHPDLVILDMDIIGE--NSPNLCLKLK 69 (140)
Q Consensus 36 ~eal~~~~~~~pdlii~D~~lp~~--dG~~~~~~ir 69 (140)
+++++.+++-.+.+.+++...|-. -|.++++.+|
T Consensus 27 ~~~l~~~~~~~~~v~~ikvg~~l~~~~G~~~i~~l~ 62 (245)
T 1eix_A 27 DDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQ 62 (245)
T ss_dssp HHHHHHHTTSCTTTCEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEECHHHHHHCCHHHHHHHH
T ss_conf 999999996389614999678999864899999999
No 309
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=23.36 E-value=33 Score=14.08 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=58.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHC---C--------CEEEEECCHHHHHHHHH--HCCCCEEEEECCCCCCCCHHH----HH
Q ss_conf 6366773888999999999872---9--------98999859799999998--489989998613688770689----99
Q T0634 4 KKILIIDQQDFSRIELKNFLDS---E--------YLVIESKNEKEALEQID--HHHPDLVILDMDIIGENSPNL----CL 66 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~---~--------~~v~~a~~~~eal~~~~--~~~pdlii~D~~lp~~dG~~~----~~ 66 (140)
.+|..||-++....+++..++. . -.-....|..+.+..+. ...||+|++|-+.|...--.. .+
T Consensus 106 ~~V~~vE~sp~~~~ll~~~l~~a~~~~~~~~~~~ri~~~~gDa~~~L~~l~~~~~~~DvIylDPMf~~~~Ksa~~kk~~~ 185 (258)
T 2r6z_A 106 LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPDIVYLDPMYPERRKSAAVKKEMA 185 (258)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCSEEEECCCC-------------H
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHH
T ss_conf 97999977888999999999999868786667865574427699999999854899988998799975223412323689
Q ss_pred HHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC-CCCH
Q ss_conf 998433689971787316787889999996699648657-9888
Q T0634 67 KLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTK-PFNR 109 (140)
Q Consensus 67 ~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~K-P~~~ 109 (140)
.++... -+..+..+....+++.+..-++.| |...
T Consensus 186 ~l~~l~---------~~~~d~~~ll~~al~~a~kRVVVKRp~~a 220 (258)
T 2r6z_A 186 YFHRLV---------GEAQDEVVLLHTARQTAKKRVVVKRPRLG 220 (258)
T ss_dssp HHHHHH---------SHHHHHHHHHHHHHHHCSSEEEEEEETTC
T ss_pred HHHHHH---------CCCCCHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 999875---------46888899999998347967999374657
No 310
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=23.33 E-value=33 Score=14.08 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=45.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEE--ECCHHHH----HHHHHHCCCCEEEE-ECCCCCCC--CHHHHHHHHHCCCCC
Q ss_conf 366773888999999999872998999--8597999----99998489989998-61368877--068999998433689
Q T0634 5 KILIIDQQDFSRIELKNFLDSEYLVIE--SKNEKEA----LEQIDHHHPDLVIL-DMDIIGEN--SPNLCLKLKRSKGLK 75 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~~~~~v~~--a~~~~ea----l~~~~~~~pdlii~-D~~lp~~d--G~~~~~~ir~~~~~~ 75 (140)
.++++||....+..++.+--..-.+.. -.+..+. ++.+. ..-++.++ |-.+|... |.++++..++.
T Consensus 33 d~i~~E~~r~~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~G~~v~liSdaG~P~IadPG~~lv~~a~~~---- 107 (117)
T 3hh1_A 33 GAIACEDTRRTSILLKHFGIEGKRLVSYHSFNEERAVRQVIELLE-EGSDVALVTDAGTPAISDPGYTMASAAHAA---- 107 (117)
T ss_dssp SEEEESCHHHHHHHHHHTTCCSCCEEECCSTTHHHHHHHHHHHHH-TTCCEEEEEETTSCGGGSTTHHHHHHHHHT----
T ss_pred CEEEECCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCEEECCHHHHHHHHHHC----
T ss_conf 999984721468889874433444775155157889999999998-499599990699964657789999999986----
Q ss_pred CCCEEEEEC
Q ss_conf 971787316
Q T0634 76 NVPLILLFS 84 (140)
Q Consensus 76 ~iPiI~lta 84 (140)
+++|..+-+
T Consensus 108 ~i~V~~ipG 116 (117)
T 3hh1_A 108 GLPVVPVPG 116 (117)
T ss_dssp TCCEEEEC-
T ss_pred CCCEEECCC
T ss_conf 996895799
No 311
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=23.29 E-value=33 Score=14.07 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=24.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9717873167878899999966996486579888999999999999999999
Q T0634 76 NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
Q Consensus 76 ~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~~ 127 (140)
.+|+|..+..+..+. ..+.| ..++..+ |+++|...|+.++.-....+
T Consensus 301 G~PvI~~~~~g~~~~---iv~~g-~g~lv~~-d~~~la~~i~~ll~d~~~~~ 347 (375)
T 3beo_A 301 GVPVLVLRDTTERPE---GIEAG-TLKLAGT-DEETIFSLADELLSDKEAHD 347 (375)
T ss_dssp TCCEEECSSCCSCHH---HHHTT-SEEECCS-CHHHHHHHHHHHHHCHHHHH
T ss_pred CCCEEEECCCCCCHH---HEECC-EEEECCC-CHHHHHHHHHHHHCCHHHHH
T ss_conf 998999059987563---44778-0798899-99999999999976999999
No 312
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=22.96 E-value=34 Score=14.03 Aligned_cols=75 Identities=11% Similarity=-0.009 Sum_probs=52.3
Q ss_pred ECCHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE-CCCCH
Q ss_conf 85979999999848-99899986136887706899999843368997178731678788999999669964865-79888
Q T0634 32 SKNEKEALEQIDHH-HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT-KPFNR 109 (140)
Q Consensus 32 a~~~~eal~~~~~~-~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~-KP~~~ 109 (140)
+.+..+|+..++.. .+.+.++.--+|..+-++..+.+++.. .+||..--...+.....+.++.|+-|++. ||...
T Consensus 223 ~~~~~~A~~~~~~l~~~~l~~~EeP~~~~~~~~~~~~l~~~~---~ipia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~ 299 (410)
T 3dip_A 223 LWGTHAAARICNALADYGVLWVEDPIAKMDNIPAVADLRRQT---RAPICGGENLAGTRRFHEMLCADAIDFVMLDLTWC 299 (410)
T ss_dssp CBCHHHHHHHHHHGGGGTCSEEECCBSCTTCHHHHHHHHHHH---CCCEEECTTCCSHHHHHHHHHTTCCSEEEECTTTS
T ss_pred CCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 656999999999986159766877899700137899998436---96513787645599999999726530054467557
No 313
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate assisted catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=22.83 E-value=34 Score=14.02 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=43.4
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8999861368877068999998433689971787316787889999996699648657988899999999999999999
Q T0634 48 DLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYY 126 (140)
Q Consensus 48 dlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~ 126 (140)
|+.+.- ...+.-|..++..+. ..+|||. |..+... +.++.|.++|+.+|-|+++|...|..++......
T Consensus 327 d~~v~~-s~~E~~~~~~lEama-----~G~PVI~-s~~gg~~---e~i~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~ 395 (438)
T 3c48_A 327 DIVAVP-SFNESFGLVAMEAQA-----SGTPVIA-ARVGGLP---IAVAEGETGLLVDGHSPHAWADALATLLDDDETR 395 (438)
T ss_dssp SEEEEC-CSCCSSCHHHHHHHH-----TTCCEEE-ESCTTHH---HHSCBTTTEEEESSCCHHHHHHHHHHHHHCHHHH
T ss_pred CCCCCC-CHHCCCHHHHHHHHH-----CCCEEEE-ECCCCHH---HHHCCCCEEEEECCCCHHHHHHHHHHHHCCHHHH
T ss_conf 567467-500021277999986-----4972999-5899717---7732796489978999999999999998699999
No 314
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=22.77 E-value=34 Score=14.01 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=54.8
Q ss_pred EEEEC----CCHHHHHHHHHHHHCC--CEEE--EECCHHHHHHHHHHCCCCEEEEECC--------------CCCCCCHH
Q ss_conf 66773----8889999999998729--9899--9859799999998489989998613--------------68877068
Q T0634 6 ILIID----QQDFSRIELKNFLDSE--YLVI--ESKNEKEALEQIDHHHPDLVILDMD--------------IIGENSPN 63 (140)
Q Consensus 6 ILivD----D~~~~r~~l~~~L~~~--~~v~--~a~~~~eal~~~~~~~pdlii~D~~--------------lp~~dG~~ 63 (140)
++++| .+......++.+-... -.++ -+.+.+.+..+.+ ...|.|.+.+. .|..+.+-
T Consensus 270 ~iviD~Ahg~s~~v~~~ik~ik~~~~~~~vi~Gnv~t~~~a~~L~~-aGad~vkVGiG~Gs~CtTr~~~GvG~pq~sai~ 348 (514)
T 1jcn_A 270 VIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLID-AGVDGLRVGMGCGSICITQEVMACGRPQGTAVY 348 (514)
T ss_dssp EEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHH-HTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHH-HCCCEEEEECCCCCCCCCCCCEEECCCHHHHHH
T ss_conf 7985045633688999999999878997188620336999999998-388878873147876458884010786899999
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 99999843368997178731678788999999669964865
Q T0634 64 LCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 64 ~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
-|...+.. .++|||.=-+....-+..+|+.+||+....
T Consensus 349 ~~a~~~~~---~~v~IIADGGi~~sGDi~KAla~GAd~VMl 386 (514)
T 1jcn_A 349 KVAEYARR---FGVPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp HHHHHHGG---GTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHH---CCCCEEECCCCCCCCHHHHHHHCCCCEEEE
T ss_conf 99999987---599389468816323799998638978997
No 315
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=22.72 E-value=34 Score=14.00 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=39.5
Q ss_pred CEEEEE-CCCHH----HHHHHHHHHH-CCCEEEE---------ECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 636677-38889----9999999987-2998999---------8597999999984899899986136887706899999
Q T0634 4 KKILII-DQQDF----SRIELKNFLD-SEYLVIE---------SKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKL 68 (140)
Q Consensus 4 ~rILiv-DD~~~----~r~~l~~~L~-~~~~v~~---------a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~i 68 (140)
+|+||| |+... ....+...|+ .+..+.. ..+..++.+.+++..+|+|| .+.|++-+++++.+
T Consensus 41 ~r~llV~~~~~~~~~g~~~~v~~~L~~~~i~~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~II---aiGGGs~iD~aK~i 117 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVV---GLGGGSPMDFAKAV 117 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEE---EEESHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE---EECCCCCCHHHHHH
T ss_conf 958999768688874599999999987698599968867897999999999999853998899---92898612389999
Q ss_pred HH
Q ss_conf 84
Q T0634 69 KR 70 (140)
Q Consensus 69 r~ 70 (140)
.-
T Consensus 118 a~ 119 (371)
T 1o2d_A 118 AV 119 (371)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 316
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=22.57 E-value=34 Score=13.98 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=45.0
Q ss_pred HHHHHH---HHHHCCCCEEEEECC------------CCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCC
Q ss_conf 799999---998489989998613------------68877068999998433689971787316787889999996699
Q T0634 35 EKEALE---QIDHHHPDLVILDMD------------IIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGA 99 (140)
Q Consensus 35 ~~eal~---~~~~~~pdlii~D~~------------lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga 99 (140)
-+++.+ .+.+...|++-+... .|...-..+++.+|+. ..+|+|..-+..+++...++++.|.
T Consensus 227 ~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~---~~~pvi~~g~~~~~~~ae~~l~~g~ 303 (671)
T 1ps9_A 227 FAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGH---VSLPLVTTNRINDPQVADDILSRGD 303 (671)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTS---CSSCEEECSSCCSHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHCCC
T ss_conf 8999999999998287303022354345676556776511669999999741---5777898379777999999998799
Q ss_pred CEEEE
Q ss_conf 64865
Q T0634 100 DDYLT 104 (140)
Q Consensus 100 ~dyl~ 104 (140)
.|++.
T Consensus 304 ~D~v~ 308 (671)
T 1ps9_A 304 ADMVS 308 (671)
T ss_dssp CSEEE
T ss_pred CCEEH
T ss_conf 87641
No 317
>3fdx_A Putative filament protein / universal stress protein F; structural genomics, APC60640.1, PSI-2, protein structure initiative; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=22.41 E-value=34 Score=13.96 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=9.9
Q ss_pred HHHHHHHCCCCEEEEECCCC
Q ss_conf 99999848998999861368
Q T0634 38 ALEQIDHHHPDLVILDMDII 57 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp 57 (140)
..+..++..+|+|++...-+
T Consensus 98 I~~~a~~~~~dliV~G~~~~ 117 (143)
T 3fdx_A 98 ILALAKSLPADLVIIASHRP 117 (143)
T ss_dssp HHHHHHHTTCSEEEEESSCT
T ss_pred HHHHHHHHCCCEEEECCCCC
T ss_conf 99999871678899737889
No 318
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=22.35 E-value=34 Score=13.96 Aligned_cols=66 Identities=20% Similarity=0.231 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCC-CCC--------CCHHHHHHHHHCCCCCCCCEEEEEC-------------------
Q ss_conf 597999999984899899986136-887--------7068999998433689971787316-------------------
Q T0634 33 KNEKEALEQIDHHHPDLVILDMDI-IGE--------NSPNLCLKLKRSKGLKNVPLILLFS------------------- 84 (140)
Q Consensus 33 ~~~~eal~~~~~~~pdlii~D~~l-p~~--------dG~~~~~~ir~~~~~~~iPiI~lta------------------- 84 (140)
+++++|.+.+++..+|..=..+.= -+. =-++.++.|++.. .+|+++=-+
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~p~l~~~~L~~I~~~~---~vPLVLHGgS~~p~~~~~~~~~~g~~~h 229 (305)
T 1rvg_A 153 TNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV---PAPLVLHGASAVPPELVERFRASGGEIG 229 (305)
T ss_dssp CCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC---CSCEEECSCCCCCHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC---CCCEECCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 7889999999996856524443155503377664321087999997147---9886435776664888753022111246
Q ss_pred ---CCCHHHHHHHHHCCCCE
Q ss_conf ---78788999999669964
Q T0634 85 ---SEHKEAIVNGLHSGADD 101 (140)
Q Consensus 85 ---~~~~~~~~~a~~~Ga~d 101 (140)
-...++..+|.+.|+.=
T Consensus 230 g~sG~~~e~i~~ai~~GI~K 249 (305)
T 1rvg_A 230 EAAGIHPEDIKKAISLGIAK 249 (305)
T ss_dssp SCBCCCHHHHHHHHHTTEEE
T ss_pred CCCCCCHHHHHHHHHCCEEE
T ss_conf 66799999999998659689
No 319
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=22.28 E-value=35 Score=13.95 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=22.0
Q ss_pred CC-CCEEEEECCCHHHHHHHHHHH-HCCCE
Q ss_conf 99-863667738889999999998-72998
Q T0634 1 MS-LKKILIIDQQDFSRIELKNFL-DSEYL 28 (140)
Q Consensus 1 m~-m~rILivDD~~~~r~~l~~~L-~~~~~ 28 (140)
|+ |+||||.--+=.+..-+...| +.++.
T Consensus 1 m~~~kkILItG~tGfIG~~lv~~Ll~~g~~ 30 (348)
T 1oc2_A 1 MSQFKNIIVTGGAGFIGSNFVHYVYNNHPD 30 (348)
T ss_dssp --CCSEEEEETTTSHHHHHHHHHHHHHCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 999988989688858999999999977997
No 320
>2qx2_A Sex pheromone staph-CAM373; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Staphylococcus aureus subsp}
Probab=22.22 E-value=35 Score=13.94 Aligned_cols=20 Identities=20% Similarity=0.576 Sum_probs=14.8
Q ss_pred HHHHHHHHHCCCCCCCCEEE
Q ss_conf 68999998433689971787
Q T0634 62 PNLCLKLKRSKGLKNVPLIL 81 (140)
Q Consensus 62 ~~~~~~ir~~~~~~~iPiI~ 81 (140)
-+++++||+.....++||.+
T Consensus 171 ~~il~rlR~~~~lk~vPI~i 190 (344)
T 2qx2_A 171 SEILSRLRENDDLKDIPIHF 190 (344)
T ss_dssp HHHHHHHHTSGGGSSSCEEE
T ss_pred HHHHHHHHHCCCCCCCCEEE
T ss_conf 99999998326778889799
No 321
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=22.13 E-value=35 Score=13.93 Aligned_cols=41 Identities=15% Similarity=-0.028 Sum_probs=19.9
Q ss_pred ECCHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHHCC
Q ss_conf 859799999998489989998613688-77068999998433
Q T0634 32 SKNEKEALEQIDHHHPDLVILDMDIIG-ENSPNLCLKLKRSK 72 (140)
Q Consensus 32 a~~~~eal~~~~~~~pdlii~D~~lp~-~dG~~~~~~ir~~~ 72 (140)
..|..++++.+.+..++=|++.=.-|. .+|++.++.+.+..
T Consensus 165 ~~d~~~al~~Li~lG~~rILTSGg~~~A~eG~~~L~~Lv~~a 206 (287)
T 3iwp_A 165 VHDPMAALETLLTLGFERVLTSGCDSSALEGLPLIKRLIEQA 206 (287)
T ss_dssp CSCHHHHHHHHHHHTCSEEEECTTSSSTTTTHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 079999999999739885665888556888589999999973
No 322
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A*
Probab=21.82 E-value=35 Score=13.89 Aligned_cols=73 Identities=10% Similarity=-0.025 Sum_probs=45.9
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98999861368877068999998433689971787316787889999996699648657988899999999999999999
Q T0634 47 PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYY 126 (140)
Q Consensus 47 pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~lr~~~~~ 126 (140)
-|+.++-..-.+.-|+.++..+-. .+|+|. |..+ ...+.+.-|.+.|+..|-|+++|...|..++......
T Consensus 283 adv~v~ps~~~E~~~~~~lEAma~-----G~PvI~-s~~~---g~~e~i~~~~~G~l~~~~d~~~la~~i~~l~~d~~~~ 353 (406)
T 2gek_A 283 ADVYCAPHLGGESFGIVLVEAMAA-----GTAVVA-SDLD---AFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLR 353 (406)
T ss_dssp SSEEEECCCSCCSSCHHHHHHHHH-----TCEEEE-CCCH---HHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHC-----CCCEEE-ECCC---CHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCHHHH
T ss_conf 332336740113485899999976-----995999-4799---8699852797289977999999999999997699999
Q ss_pred HH
Q ss_conf 99
Q T0634 127 SD 128 (140)
Q Consensus 127 ~~ 128 (140)
..
T Consensus 354 ~~ 355 (406)
T 2gek_A 354 AG 355 (406)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 323
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=21.79 E-value=35 Score=13.89 Aligned_cols=47 Identities=9% Similarity=0.096 Sum_probs=26.4
Q ss_pred CEEEEECCCHH-HHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEE
Q ss_conf 63667738889-99999999872998--9998597999999984899899986
Q T0634 4 KKILIIDQQDF-SRIELKNFLDSEYL--VIESKNEKEALEQIDHHHPDLVILD 53 (140)
Q Consensus 4 ~rILivDD~~~-~r~~l~~~L~~~~~--v~~a~~~~eal~~~~~~~pdlii~D 53 (140)
.+|||+|=-.. +..+++++.+.|.. +.-.....+ .+....||-||+.
T Consensus 25 ~~I~vlDfG~q~~~lI~R~lrelgv~~ei~p~~~~~e---~i~~~~~dGiIlS 74 (218)
T 2vpi_A 25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAF---AIKEQGFRAIIIS 74 (218)
T ss_dssp TCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHH---HHHHHTCSEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHH---HHHHCCCCEEEEC
T ss_conf 9899998897187899999987698799995979999---9974799999989
No 324
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=21.77 E-value=35 Score=13.88 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=17.9
Q ss_pred CCCCEEEEECCCHH----HHHHHH---HHHH-CCCEEEEE
Q ss_conf 99863667738889----999999---9987-29989998
Q T0634 1 MSLKKILIIDQQDF----SRIELK---NFLD-SEYLVIES 32 (140)
Q Consensus 1 m~m~rILivDD~~~----~r~~l~---~~L~-~~~~v~~a 32 (140)
|+ ||||||--+|. +..+.. ..|+ .|..|...
T Consensus 1 m~-KKvLiV~aHP~~~S~~~al~~~~~~~l~~~G~eV~v~ 39 (273)
T 1d4a_A 1 VG-RRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVES 39 (273)
T ss_dssp CC-CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CC-CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 98-7599997289984579999852088999789979999
No 325
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, structural genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6
Probab=21.74 E-value=35 Score=13.88 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=10.2
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 7873167878899999966996486
Q T0634 79 LILLFSSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~~Ga~dyl 103 (140)
++++- +...+...|.++|+.-+.
T Consensus 173 ~l~IG--Ds~~Di~aA~~aG~~~i~ 195 (234)
T 2hcf_A 173 IVIIG--DTEHDIRCARELDARSIA 195 (234)
T ss_dssp EEEEE--SSHHHHHHHHTTTCEEEE
T ss_pred EEEEC--CCHHHHHHHHHCCCEEEE
T ss_conf 47857--888889999996997999
No 326
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=21.61 E-value=36 Score=13.86 Aligned_cols=23 Identities=9% Similarity=0.289 Sum_probs=10.4
Q ss_pred ECCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 85979999999848998999861
Q T0634 32 SKNEKEALEQIDHHHPDLVILDM 54 (140)
Q Consensus 32 a~~~~eal~~~~~~~pdlii~D~ 54 (140)
|.+|.-+++++....-.++++|.
T Consensus 62 aGSG~lglEAlSRGA~~v~fVE~ 84 (201)
T 2ift_A 62 AGSGSLGFEALSRQAKKVTFLEL 84 (201)
T ss_dssp CTTCHHHHHHHHTTCSEEEEECS
T ss_pred CCCCHHHHHHHHCCCCEEEEEEE
T ss_conf 88389999999879958999741
No 327
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=21.54 E-value=36 Score=13.85 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=36.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCC---HHHHHHHHH-----CCCCCCCCEEEEECCCCHHHHHHHH----HCCCCEEE
Q ss_conf 99999998489989998613688770---689999984-----3368997178731678788999999----66996486
Q T0634 36 KEALEQIDHHHPDLVILDMDIIGENS---PNLCLKLKR-----SKGLKNVPLILLFSSEHKEAIVNGL----HSGADDYL 103 (140)
Q Consensus 36 ~eal~~~~~~~pdlii~D~~lp~~dG---~~~~~~ir~-----~~~~~~iPiI~lta~~~~~~~~~a~----~~Ga~dyl 103 (140)
.++++.++...+|+||+|-.=-...- ++-++.++. .+..+.-.++++.+....+...++. ..|.+..+
T Consensus 181 ~~~~~~a~~~~~d~vlIDTaGr~~~~~~l~~el~~i~~~~~~~~~~~p~e~~LVlda~~g~~~~~~~~~f~~~~~~~glI 260 (320)
T 1zu4_A 181 FDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVADVSGII 260 (320)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHHHHHTTTSCCCEEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 99999999779999998477766665778888887765655226789841268742246874067788887517987799
Q ss_pred E
Q ss_conf 5
Q T0634 104 T 104 (140)
Q Consensus 104 ~ 104 (140)
.
T Consensus 261 l 261 (320)
T 1zu4_A 261 L 261 (320)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 328
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=21.29 E-value=36 Score=13.82 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=39.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCC-CCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 7999999984899899986136887-706899999843368997178731678788999999669964865
Q T0634 35 EKEALEQIDHHHPDLVILDMDIIGE-NSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 35 ~~eal~~~~~~~pdlii~D~~lp~~-dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
..+-...+-+...|++++|..=-.. ...++++.+|.. .+++|||. =.-...+.....+++||+....
T Consensus 234 ~~~ra~~Lv~aGvDviviDtAhGhs~~~~~~~~~~~~~--~~~~~vi~-Gnv~t~~~a~~L~~~Gad~v~V 301 (491)
T 1zfj_A 234 TFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAH--FPNRTLIA-GNIATAEGARALYDAGVDVVKV 301 (491)
T ss_dssp HHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHH--CSSSCEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCCCEEE-EEECCHHHHHHHHHHCCCEEEE
T ss_conf 79999999970886488612566663046788987630--57776389-9725499999999847460664
No 329
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} SCOP: e.22.1.2
Probab=21.27 E-value=36 Score=13.82 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=42.8
Q ss_pred CCEEEEECCCHHH-----HHHHHHHHH-CCCEEEEEC---------CHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 8636677388899-----999999987-299899985---------9799999998489989998613688770689999
Q T0634 3 LKKILIIDQQDFS-----RIELKNFLD-SEYLVIESK---------NEKEALEQIDHHHPDLVILDMDIIGENSPNLCLK 67 (140)
Q Consensus 3 m~rILivDD~~~~-----r~~l~~~L~-~~~~v~~a~---------~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ 67 (140)
.+|+|||=|.... ..-+...|+ .+..+.... +..++.+.+++..+|+|| .+.|++-+++++.
T Consensus 43 ~krvliVt~~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~pt~~~v~~~~~~~~~~~~D~II---avGGGS~iD~aK~ 119 (407)
T 1vlj_A 43 IRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVL---GVGGGSVVDSAKA 119 (407)
T ss_dssp CCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEE---EEESHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEE---ECCCCCHHHHHHH
T ss_conf 9858999887578876299999999986599199986716999999999999986135887575---2388631146788
Q ss_pred HHH
Q ss_conf 984
Q T0634 68 LKR 70 (140)
Q Consensus 68 ir~ 70 (140)
+..
T Consensus 120 va~ 122 (407)
T 1vlj_A 120 VAA 122 (407)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 899
No 330
>3bpp_A 1510-N membrane protease; specific for A stomatin homolog, archaea, thermostable, catalytic DYAD, hydrolase; 2.30A {Pyrococcus horikoshii} PDB: 2deo_A
Probab=21.24 E-value=36 Score=13.82 Aligned_cols=36 Identities=17% Similarity=0.405 Sum_probs=27.6
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCC---CHHHHHHHHHCC
Q ss_conf 999999848998999861368877---068999998433
Q T0634 37 EALEQIDHHHPDLVILDMDIIGEN---SPNLCLKLKRSK 72 (140)
Q Consensus 37 eal~~~~~~~pdlii~D~~lp~~d---G~~~~~~ir~~~ 72 (140)
+++..+.+..++.|+++++=||++ |.++...|+..+
T Consensus 29 ~~l~~a~~~~~~~vvl~InSPGG~v~~~~~i~~~i~~~~ 67 (230)
T 3bpp_A 29 RYITIAEQDNAEAIIIELDTPGGRADAMMNIVQRIQQSK 67 (230)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSCBCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 999998758998799999897998999999999999744
No 331
>3g1v_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, D70G; HET: 5FU; 1.30A {Methanothermobacter thermautotrophicusstr} PDB: 3g1s_A* 3g1x_A* 1kly_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3g1a_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 1loq_A* 1lor_A* 1km0_A* 1dv7_A 2zz3_A* 1km1_A* 1km6_A* 1km5_A* ...
Probab=21.24 E-value=36 Score=13.82 Aligned_cols=57 Identities=7% Similarity=0.100 Sum_probs=33.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHH-CCC-EEEEEC------CHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 8636677388899999999987-299-899985------97999999984899899986136887
Q T0634 3 LKKILIIDQQDFSRIELKNFLD-SEY-LVIESK------NEKEALEQIDHHHPDLVILDMDIIGE 59 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~-~~~-~v~~a~------~~~eal~~~~~~~pdlii~D~~lp~~ 59 (140)
|+|+.+.=|-......++-.-+ .+| .++... .|.+++..+++..|..|++|+.+-+.
T Consensus 12 ~~kl~vAlD~~~~~~al~i~~~~~~~i~~iKiG~~l~~~~G~~~i~~l~~~~~~~I~~D~K~~DI 76 (228)
T 3g1v_A 12 MNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIAGFKVADI 76 (228)
T ss_dssp GGGEEEEECCSSHHHHHHHHHHHTTTCSEEEECHHHHHHHCTHHHHHHHHHHCCEEEEEEEECSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECHHHHHHCCHHHHHHHHHHCCCEEEEECHHHHH
T ss_conf 48869995279999999999984886629998799997449999999997689809985023218
No 332
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 1n4a_A* 1n4d_A
Probab=21.20 E-value=36 Score=13.81 Aligned_cols=50 Identities=28% Similarity=0.294 Sum_probs=27.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 9999848998999861368877068999998433689971787316787889999996
Q T0634 39 LEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLH 96 (140)
Q Consensus 39 l~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~ 96 (140)
++.+.+..|||||.... ...-+....+++. .+|++++.. ...+.....++
T Consensus 50 ~E~l~~l~PDlVi~~~~---~~~~~~~~~L~~~----gi~v~~~~~-~~~~~~~~~i~ 99 (245)
T 1n2z_A 50 LERIVALKPDLVIAWRG---GNAERQVDQLASL----GIKVMWVDA-TSIEQIANALR 99 (245)
T ss_dssp HHHHHHTCCSEEEECTT---TSCHHHHHHHHHH----TCCEEECCC-CSHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEECC---CCCHHHHHHHHHC----CCEEEEECC-CCHHHHHHHHH
T ss_conf 99998439974883057---7728899999852----986998179-99999999999
No 333
>3gfv_A Uncharacterized ABC transporter solute-binding protein YCLQ; alpha-beta-sandwich, periplasmic binding protein fold (PBP fold); 1.75A {Bacillus subtilis subsp}
Probab=21.19 E-value=20 Score=15.48 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=14.5
Q ss_pred HHHHHHHCCCCEEEEECCCC
Q ss_conf 99999848998999861368
Q T0634 38 ALEQIDHHHPDLVILDMDII 57 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp 57 (140)
-++.+....|||||.+...+
T Consensus 87 ~~E~I~~l~PDlIi~~~~~~ 106 (303)
T 3gfv_A 87 DFDKVAELDPDLIIISARQS 106 (303)
T ss_dssp CHHHHHHTCCSEEEECGGGG
T ss_pred CHHHHHHCCCCEEEEECCCH
T ss_conf 99999732979999954534
No 334
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=20.95 E-value=37 Score=13.78 Aligned_cols=77 Identities=22% Similarity=0.146 Sum_probs=40.3
Q ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 36677388899999999987-29989998597999999984899899986136887706899999843368997178731
Q T0634 5 KILIIDQQDFSRIELKNFLD-SEYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~-~~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lt 83 (140)
.|+|||--..+-..+.+.|+ -|..+....+. ..++.+....||-+++.-..-...-......++.... ..+|++-+-
T Consensus 2 mI~iiD~g~~~t~~I~~~l~~lg~~~~vvp~~-~~~~~~~~~~~~gvilsgg~~~~~~~~~~~~i~~~~~-~~~PilGIC 79 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSLENTGNCEKVLEHYDE-FNVPILGIC 79 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETT-CCHHHHHHTCCSEEEECCCSCTTCCTTHHHHHHTGGG-TCSCEEEET
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCCEEEEH
T ss_conf 89999798808999999998679859998599-9889986532543112357632124543100000003-574377534
No 335
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural genomics, NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus VF5}
Probab=20.87 E-value=37 Score=13.77 Aligned_cols=89 Identities=10% Similarity=0.060 Sum_probs=43.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CC--EEE-EECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 6366773888999999999872-99--899-9859799999998489989998613688770689999984336899717
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EY--LVI-ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~--~v~-~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi 79 (140)
.+|.-+|-++......+.-++. +. .+. ...+..+. .+....+|.|++|+ |+. .+.+..+.+.-. +.-.+
T Consensus 114 g~V~~vd~~~~~~~~A~~n~~~~gl~~~v~~~~~d~~~~--~~~~~~fD~V~ld~--p~p--~~~l~~~~~~Lk-pGG~l 186 (248)
T 2yvl_A 114 GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA--EVPEGIFHAAFVDV--REP--WHYLEKVHKSLM-EGAPV 186 (248)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS--CCCTTCBSEEEECS--SCG--GGGHHHHHHHBC-TTCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHC--CCCCCCCCEEEEEC--CCC--HHHHHHHHHHCC-CCCEE
T ss_conf 908998489999999996333317652102587026768--53456578999968--530--310999997248-99789
Q ss_pred EEEEC-CCCHHHHHHHHHCCC
Q ss_conf 87316-787889999996699
Q T0634 80 ILLFS-SEHKEAIVNGLHSGA 99 (140)
Q Consensus 80 I~lta-~~~~~~~~~a~~~Ga 99 (140)
++.+. ..+.....++++.|.
T Consensus 187 ~~~~p~~~qv~~~~~~l~~~f 207 (248)
T 2yvl_A 187 GFLLPTANQVIKLLESIENYF 207 (248)
T ss_dssp EEEESSHHHHHHHHHHSTTTE
T ss_pred EEEECCHHHHHHHHHHHHHCC
T ss_conf 999698889999999998378
No 336
>3aek_A Light-independent protochlorophyllide reductase subunit N; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=20.71 E-value=37 Score=13.75 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999
Q T0634 109 RNDLLSRIEIHLRTQNYY 126 (140)
Q Consensus 109 ~~eL~~~i~~~lr~~~~~ 126 (140)
...|...+..-|+++...
T Consensus 415 a~~l~~l~~rpL~r~~~l 432 (437)
T 3aek_A 415 AGDLAGLFSRPLRRRALL 432 (437)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999999997513305
No 337
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, quinolinic acid; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=20.69 E-value=37 Score=13.75 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=45.6
Q ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 98999859799999998489989998613688770689999984336899717873167878899999966996486
Q T0634 27 YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 27 ~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl 103 (140)
...+++.+-+++.+.+. ..+|.|.+| +|.-.+=-+.++.++.. .+++ .|..|+.-+.+.....-+.|+|-+-
T Consensus 196 ~i~vEv~~~~e~~~a~~-~~~d~ImLD-n~~~~~i~~~v~~~~~~--~~~v-~ieaSGGI~~~ni~~ya~~GVD~Is 267 (284)
T 1qpo_A 196 PCEVEVDSLEQLDAVLP-EKPELILLD-NFAVWQTQTAVQRRDSR--APTV-MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp CEEEEESSHHHHHHHGG-GCCSEEEEE-TCCHHHHHHHHHHHHHH--CTTC-EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred CEEEEECCHHHHHHHHH-HCCCEEEEC-CCCHHHHHHHHHHHHCC--CCCE-EEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 72899344988888774-022289856-88879999999997277--9947-9999889999999999865999998
No 338
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, X-RAY diffraction, riken structural genomics/proteomics initiative; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=20.67 E-value=37 Score=13.74 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=47.8
Q ss_pred HHHHHHHCCCE-EEEECCHHHHHHHHHHCCCCEEEEE-CCCCCC-----CCHHHHHHHHHCCCCCCCCEEEEECCCCHHH
Q ss_conf 99999872998-9998597999999984899899986-136887-----7068999998433689971787316787889
Q T0634 18 ELKNFLDSEYL-VIESKNEKEALEQIDHHHPDLVILD-MDIIGE-----NSPNLCLKLKRSKGLKNVPLILLFSSEHKEA 90 (140)
Q Consensus 18 ~l~~~L~~~~~-v~~a~~~~eal~~~~~~~pdlii~D-~~lp~~-----dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~ 90 (140)
.+....+-|-+ ++++.|.+|.-..+. ..+++|=+. .++-.. ....+.+.+...+ .+..+|.-||....++
T Consensus 146 l~~~A~~lGle~LVEvh~~~El~~a~~-~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~--~~~i~IsESGI~~~~d 222 (254)
T 1vc4_A 146 YLEEARRLGLEALVEVHTERELEIALE-AGAEVLGINNRDLATLHINLETAPRLGRLARKRG--FGGVLVAESGYSRKEE 222 (254)
T ss_dssp HHHHHHHHTCEEEEEECSHHHHHHHHH-HTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTT--CCSEEEEESCCCSHHH
T ss_pred HHHHHHHHCCCEEEEEECHHHHHHHHC-CCCCEEEEECCCHHHHHCCHHHHHHHHHHHCCCC--CCCEEEECCCCCCHHH
T ss_conf 999999838822655512866302115-8986899952555665313888988632000257--7988998469999999
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 99999669964865
Q T0634 91 IVNGLHSGADDYLT 104 (140)
Q Consensus 91 ~~~a~~~Ga~dyl~ 104 (140)
. +.+++|++.||.
T Consensus 223 v-~~l~~g~davLI 235 (254)
T 1vc4_A 223 L-KALEGLFDAVLI 235 (254)
T ss_dssp H-HTTTTTCSEEEE
T ss_pred H-HHHHCCCCEEEE
T ss_conf 9-999869999998
No 339
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=20.63 E-value=37 Score=13.74 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=39.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEE-C----------------------------CHHHHHHHHHHCCCCEEEEE
Q ss_conf 863667738889999999998729989998-5----------------------------97999999984899899986
Q T0634 3 LKKILIIDQQDFSRIELKNFLDSEYLVIES-K----------------------------NEKEALEQIDHHHPDLVILD 53 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~~~~v~~a-~----------------------------~~~eal~~~~~~~pdlii~D 53 (140)
|+||||+---+....+++.+-+.|+.++.. + |.+..++.+.+..+|-|+..
T Consensus 1 ikkiLIanrGeia~riira~kelGi~tVav~s~~D~~a~~~~~AD~~~~i~~~~~~~syld~~~ii~ia~~~~~DaI~pg 80 (451)
T 2vpq_A 1 MKKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPG 80 (451)
T ss_dssp -CEEEECCCHHHHHHHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHTTCSEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 97899989719999999999987995999838567468897788999982898643343689999999999786999967
Q ss_pred CCC
Q ss_conf 136
Q T0634 54 MDI 56 (140)
Q Consensus 54 ~~l 56 (140)
+..
T Consensus 81 ~G~ 83 (451)
T 2vpq_A 81 YGF 83 (451)
T ss_dssp SST
T ss_pred HHH
T ss_conf 667
No 340
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=20.40 E-value=38 Score=13.71 Aligned_cols=89 Identities=9% Similarity=0.095 Sum_probs=43.4
Q ss_pred EEECCCHHHHHHHHHHHHCCCEEEEE----CCHHHHHHHHHH-CCCCEEE-----EE--------------CCCCCCCCH
Q ss_conf 67738889999999998729989998----597999999984-8998999-----86--------------136887706
Q T0634 7 LIIDQQDFSRIELKNFLDSEYLVIES----KNEKEALEQIDH-HHPDLVI-----LD--------------MDIIGENSP 62 (140)
Q Consensus 7 LivDD~~~~r~~l~~~L~~~~~v~~a----~~~~eal~~~~~-~~pdlii-----~D--------------~~lp~~dG~ 62 (140)
+-.+|........+.+.+.|..+.+. .++.++++.+.+ ..|++++ +| +.-|+.+ .
T Consensus 16 lr~~~~~~a~~~~~al~~~Gi~~iEitl~~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivsP~~~-~ 94 (205)
T 1wa3_A 16 LRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLD-E 94 (205)
T ss_dssp ECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEECSSCC-H
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCC-H
T ss_conf 979899999999999998799889996799617899999987308980898503223788999985364277579999-9
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 8999998433689971787316787889999996699648
Q T0634 63 NLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDY 102 (140)
Q Consensus 63 ~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dy 102 (140)
++++..++. ++| ++-+-..+.+..+|+++|++-.
T Consensus 95 ~v~~~a~~~----~~~--~iPGv~TpsEi~~A~~~G~~~v 128 (205)
T 1wa3_A 95 EISQFCKEK----GVF--YMPGVMTPTELVKAMKLGHTIL 128 (205)
T ss_dssp HHHHHHHHH----TCE--EECEECSHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHC----CCC--EECCCCCHHHHHHHHHCCCCEE
T ss_conf 999999864----997--5166186788999998699889
No 341
>2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens}
Probab=20.37 E-value=38 Score=13.70 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=34.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC--EEE-------------------EECCHHHHHHHHHHCCCCEEEEECCCCCCCCH
Q ss_conf 636677388899999999987299--899-------------------98597999999984899899986136887706
Q T0634 4 KKILIIDQQDFSRIELKNFLDSEY--LVI-------------------ESKNEKEALEQIDHHHPDLVILDMDIIGENSP 62 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~~~--~v~-------------------~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~ 62 (140)
.||||+-.--.--.+...+.+..+ .+. ...|.++.++.+.++.||+||+.-.-|=..|+
T Consensus 25 ~KILviGsGgREhAia~~l~~s~~~~~v~~~pgN~g~~~~~~~~~~~i~~~d~~~i~~~~~~~~iDlvivGpE~pL~~Gl 104 (452)
T 2qk4_A 25 ARVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTACSEKISNTAISISDHTALAQFCKEKKIEFVVVGPEAPLAAGI 104 (452)
T ss_dssp EEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCGGGSBSSSEEECCCCSSCHHHHHHHHHHHTCCEEEECSSHHHHTTH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCCEECCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
T ss_conf 77999997889999999998698988899978987884004313356585699999999998699999989828989989
No 342
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=20.31 E-value=38 Score=13.69 Aligned_cols=47 Identities=13% Similarity=0.315 Sum_probs=29.6
Q ss_pred HHHHHHHCCCCEEEEECCCCCCC---CHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 99999848998999861368877---0689999984336899717873167
Q T0634 38 ALEQIDHHHPDLVILDMDIIGEN---SPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
Q Consensus 38 al~~~~~~~pdlii~D~~lp~~d---G~~~~~~ir~~~~~~~iPiI~lta~ 85 (140)
+++..-...|+++|+|-..-+.| -.++...|++... ..+-||++|-.
T Consensus 163 ~iAraL~~~P~iLllDEPtsgLD~~~~~~i~~~i~~l~~-~g~tii~isHd 212 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHR 212 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC
T ss_pred HHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC
T ss_conf 999999879897664697556999999999999999986-79999999085
No 343
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=20.30 E-value=38 Score=13.69 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=32.7
Q ss_pred CCEEEEECCCHHHHHHHH-HHHHCCCEEEEECCH---------HHHHHHHHHCCCCEEEEEC
Q ss_conf 863667738889999999-998729989998597---------9999999848998999861
Q T0634 3 LKKILIIDQQDFSRIELK-NFLDSEYLVIESKNE---------KEALEQIDHHHPDLVILDM 54 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~-~~L~~~~~v~~a~~~---------~eal~~~~~~~pdlii~D~ 54 (140)
|+||||.--.=.+...+. .++++|+.|...... .+.++.+......++..|+
T Consensus 4 M~KILVtGatG~iG~~l~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~i~~D~ 65 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 87899979982899999999996899389998898655567788888763259819999545
No 344
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding motif, oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2
Probab=20.13 E-value=38 Score=13.67 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=48.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-H---CCCEEEE-ECCHH--HHHHHHHHCCCCEEEEECCCCCCCCH-HHHHHHHHCCC
Q ss_conf 9863667738889999999998-7---2998999-85979--99999984899899986136887706-89999984336
Q T0634 2 SLKKILIIDQQDFSRIELKNFL-D---SEYLVIE-SKNEK--EALEQIDHHHPDLVILDMDIIGENSP-NLCLKLKRSKG 73 (140)
Q Consensus 2 ~m~rILivDD~~~~r~~l~~~L-~---~~~~v~~-a~~~~--eal~~~~~~~pdlii~D~~lp~~dG~-~~~~~ir~~~~ 73 (140)
.|+.|||---+.-+-..+...| + .|+.|+. +.+.+ +.++.+.+..+.+.++-.++-+.+.. ++++.+++...
T Consensus 20 ~MktVlITGas~GIG~aia~~l~~la~~G~~V~~~~R~~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~ 99 (267)
T 1sny_A 20 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK 99 (267)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 99989991898789999999999888679999999889899999999985299889999637999999999865555422
Q ss_pred CCCCCEEEEEC
Q ss_conf 89971787316
Q T0634 74 LKNVPLILLFS 84 (140)
Q Consensus 74 ~~~iPiI~lta 84 (140)
...+-+++-.+
T Consensus 100 ~~~idiLvnNA 110 (267)
T 1sny_A 100 DQGLNVLFNNA 110 (267)
T ss_dssp GGCCSEEEECC
T ss_pred CCCEEEEEEEC
T ss_conf 68637999503
No 345
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157}
Probab=20.07 E-value=38 Score=13.66 Aligned_cols=62 Identities=6% Similarity=0.113 Sum_probs=33.9
Q ss_pred CEEEEECCCHHHHHHHHHHHH----CCCEEEEECCHHHHHHHHHHCCCC--EEEEECCCCCCCCHHHHHHHHH
Q ss_conf 636677388899999999987----299899985979999999848998--9998613688770689999984
Q T0634 4 KKILIIDQQDFSRIELKNFLD----SEYLVIESKNEKEALEQIDHHHPD--LVILDMDIIGENSPNLCLKLKR 70 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~----~~~~v~~a~~~~eal~~~~~~~pd--lii~D~~lp~~dG~~~~~~ir~ 70 (140)
.+|+||||....-...+.++. ..+.-+...+-++|.+.+.+..++ +.++ . .+-.++++.++.
T Consensus 33 ~~IiVvdD~vA~D~~~k~~l~maapp~gvk~~i~sve~a~~~l~~~~~~~~v~il-~----~~p~da~~l~~~ 100 (168)
T 3eye_A 33 NLLVVVDDVVANDDIQQKLMGITAETYGFGIRFFTIEKTINVIGKAAPHQKIFLI-C----RTPQTVRKLVEG 100 (168)
T ss_dssp SEEEEECHHHHHSGGGGHHHHHHHHHHTCEEEEECHHHHHHHGGGCCTTCCEEEE-E----SSHHHHHHHHHT
T ss_pred CEEEEECCHHCCCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHCCCCCCEEEEE-E----CCHHHHHHHHHC
T ss_conf 9999977100389999999972489777269998899999985264767629999-7----999999999975
Done!