Query T0634 3N53, , 140 residues
Match_columns 140
No_of_seqs 117 out of 24335
Neff 7.5
Searched_HMMs 11830
Date Thu Jul 22 15:36:08 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0634.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0634.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00072 Response_reg: Respons 99.8 7.9E-20 6.7E-24 140.9 14.9 110 6-117 1-112 (112)
2 PF06490 FleQ: Flagellar regul 97.0 0.0015 1.3E-07 39.4 7.7 105 5-118 1-106 (109)
3 PF03709 OKR_DC_1_N: Orn/Lys/A 96.5 0.0083 7E-07 34.8 8.4 101 19-122 9-114 (115)
4 PF05690 ThiG: Thiazole biosyn 92.5 0.28 2.4E-05 25.2 8.4 100 16-120 113-224 (247)
5 PF00563 EAL: EAL domain; Int 87.1 0.49 4.2E-05 23.7 5.2 86 16-102 137-228 (236)
6 PF00977 His_biosynth: Histidi 85.8 0.82 6.9E-05 22.3 5.8 68 34-104 147-218 (228)
7 PF02572 CobA_CobO_BtuR: ATP:c 83.9 0.54 4.6E-05 23.5 4.1 60 43-110 93-163 (172)
8 PF05582 Peptidase_U57: YabG p 77.1 1.9 0.00016 20.1 10.3 100 4-106 106-227 (287)
9 PF02254 TrkA_N: TrkA-N domain 75.5 2.1 0.00018 19.8 9.8 92 5-104 23-115 (116)
10 PF01993 MTD: methylene-5,6,7, 75.2 1.9 0.00016 20.1 4.6 80 26-109 30-118 (276)
11 PF00290 Trp_syntA: Tryptophan 71.3 2.5 0.00021 19.3 4.5 46 62-110 75-126 (259)
12 PF02310 B12-binding: B12 bind 70.9 2.7 0.00023 19.1 9.6 91 12-105 13-111 (121)
13 PF04131 NanE: Putative N-acet 67.3 3.1 0.00026 18.8 4.2 84 16-105 82-173 (192)
14 PF09936 DUF2168: Uncharacteri 64.8 3.6 0.0003 18.4 6.6 100 3-110 41-162 (184)
15 PF04309 G3P_antiterm: Glycero 61.7 2.6 0.00022 19.2 3.0 61 36-104 107-168 (175)
16 PF01645 Glu_synthase: Conserv 61.5 4.1 0.00035 18.0 4.6 89 15-103 190-301 (368)
17 PF10087 DUF2325: Uncharacteri 54.0 5.5 0.00046 17.2 9.4 88 5-96 1-94 (97)
18 PF01564 Spermine_synth: Sperm 50.9 6.2 0.00052 16.9 6.6 70 3-72 100-181 (246)
19 PF02581 TMP-TENI: Thiamine mo 50.1 6.3 0.00054 16.8 7.5 23 80-103 98-120 (180)
20 PF10237 N6-adenineMlase: Prob 49.8 6.4 0.00054 16.8 4.5 77 27-105 68-145 (162)
21 PF03602 Cons_hypoth95: Conser 49.6 6.4 0.00055 16.8 7.4 80 4-83 66-152 (183)
22 PF04321 RmlD_sub_bind: RmlD s 49.3 6.5 0.00055 16.7 6.0 81 4-84 1-101 (286)
23 PF01408 GFO_IDH_MocA: Oxidore 47.9 6.8 0.00058 16.6 10.9 100 5-119 2-109 (120)
24 PF01180 DHO_dh: Dihydroorotat 46.8 7.1 0.0006 16.5 3.6 16 46-61 122-137 (293)
25 PF03808 Glyco_tran_WecB: Glyc 40.1 9.1 0.00077 15.8 8.9 66 4-71 49-124 (172)
26 PF08415 NRPS: Nonribosomal pe 39.3 9.3 0.00079 15.8 3.1 31 58-88 3-35 (58)
27 PF00834 Ribul_P_3_epim: Ribul 38.8 4 0.00034 18.1 0.9 68 34-105 13-87 (201)
28 PF03345 DDOST_48kD: Oligosacc 37.1 10 0.00085 15.6 6.3 93 3-99 16-120 (440)
29 PF00478 IMPDH: IMP dehydrogen 36.7 10 0.00086 15.5 6.9 67 36-105 110-177 (351)
30 PF03060 NPD: 2-nitropropane d 36.1 10 0.00088 15.5 7.7 85 16-104 122-213 (323)
31 PF06925 MGDG_synth: Monogalac 36.0 10 0.00089 15.4 7.0 64 37-105 80-144 (169)
32 PF03796 DnaB_C: DnaB-like hel 34.1 11 0.00095 15.3 4.1 24 43-69 45-68 (185)
33 PF07688 KaiA: KaiA domain; I 32.9 12 0.001 15.1 7.3 70 10-84 7-79 (283)
34 PF00534 Glycos_transf_1: Glyc 26.3 15 0.0013 14.4 11.1 92 29-132 77-168 (172)
35 PF02662 FlpD: Methyl-viologen 24.4 17 0.0014 14.2 2.9 45 61-106 14-60 (124)
36 PF05729 NACHT: NACHT domain; 23.4 17 0.0015 14.1 9.0 84 38-122 72-165 (166)
37 PF00448 SRP54: SRP54-type pro 22.5 18 0.0015 14.0 7.3 94 15-109 44-152 (196)
38 PF01081 Aldolase: KDPG and KH 20.1 20 0.0017 13.7 7.1 66 29-100 13-82 (196)
39 PF01596 Methyltransf_3: O-met 20.1 20 0.0017 13.7 7.6 63 4-68 71-141 (205)
No 1
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes . These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others . The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response . The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system. ; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 1p6q_A 1p6u_A 2chf_A 2che_A 2flw_A 2pmc_C 2fmi_A 2fmk_A 2fmh_A 2flk_A ....
Probab=99.83 E-value=7.9e-20 Score=140.88 Aligned_cols=110 Identities=31% Similarity=0.568 Sum_probs=105.1
Q ss_pred EEEECCCHHHHHHHHHHHH-CCC-EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 6677388899999999987-299-89998597999999984899899986136887706899999843368997178731
Q T0634 6 ILIIDQQDFSRIELKNFLD-SEY-LVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 6 ILivDD~~~~r~~l~~~L~-~~~-~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lt 83 (140)
||||||++..+..++.+|+ .|| .|..+.++.++++.+.+..||+||+|+.+|+.+|+++++.||+.. +++|+|++|
T Consensus 1 Vlivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~dliiid~~~~~~~~~~~~~~l~~~~--~~~~vi~~~ 78 (112)
T PF00072_consen 1 VLIVDDDPDIRQLLEKLLESQGFKEVETADSGEEALRLLEQSDPDLIIIDINLPDMSGLELLERLRQQP--PNIPVIVLT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHCCSEEEEESSSSSTTHHHHHHHHHHHT--TTSEEEEEE
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCC--CCCEEECCC
T ss_conf 399999899999999999877997899989999999986525987773300032344720667777406--552596157
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 6787889999996699648657988899999999
Q T0634 84 SSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIE 117 (140)
Q Consensus 84 a~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~ 117 (140)
+..+.+...+++++|+++|+.||+++++|..+|+
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 SNDDPEEIREALKAGVDDYLSKPVDPEELRNAIK 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHC
T ss_conf 8999999999998799799989999899998639
No 2
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.97 E-value=0.0015 Score=39.45 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=68.6
Q ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 366773888999999999872-9989998597999999984899899986136887706899999843368997178731
Q T0634 5 KILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lt 83 (140)
|||||||+..-|..++.+|+- |..+...++ .+......+...+.+++...=.+ .-.+.++.+.+ ..+++||+++.
T Consensus 1 kILviddd~~Rr~~L~~IL~FlGE~~~~~~~-~~~~~~~~~~~~~a~~v~~g~~~-~~~~~l~~l~~--~~p~~Pvlllg 76 (109)
T PF06490_consen 1 KILVIDDDAERRHDLSTILEFLGEQCEAVSS-EDWSDADWSSSWEACAVILGSVS-ALAELLKALAK--WDPHIPVLLLG 76 (109)
T ss_pred CEEEECCCHHHHHCCEEEEEECCCCCEECCH-HHHHHHHHHCCCCEEEEEECCCH-HHHHHHHHHHH--HCCCCCEEEEC
T ss_conf 9899878799995772310235887477278-99888766347745999955717-79999999996--48899999977
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 67878899999966996486579888999999999
Q T0634 84 SSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEI 118 (140)
Q Consensus 84 a~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~ 118 (140)
........-. +-+-|..|++-..|...++.
T Consensus 77 ~~~~~~~~~n-----vig~Le~Pl~Y~qLt~~Lh~ 106 (109)
T PF06490_consen 77 EHDSPSELPN-----VIGELEEPLNYPQLTDALHR 106 (109)
T ss_pred CCCCCCCCCC-----EEEEECCCCCHHHHHHHHHH
T ss_conf 8886343155-----67860789987999999998
No 3
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 10^6 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation .; GO: 0016831 carboxy-lyase activity; PDB: 1ord_A 1c4k_A 2vyc_G.
Probab=96.45 E-value=0.0083 Score=34.78 Aligned_cols=101 Identities=22% Similarity=0.345 Sum_probs=70.8
Q ss_pred HHHHHH-CCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCC--CCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHH
Q ss_conf 999987-299899985979999999848-9989998613688--770689999984336899717873167878899999
Q T0634 19 LKNFLD-SEYLVIESKNEKEALEQIDHH-HPDLVILDMDIIG--ENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNG 94 (140)
Q Consensus 19 l~~~L~-~~~~v~~a~~~~eal~~~~~~-~pdlii~D~~lp~--~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a 94 (140)
+...|+ .|+.|+.+.+..+++..+++. ...+|++||. ++ ....+++..||+.. .++||.+++.....+..-..
T Consensus 9 L~~~l~~~~~~vv~~~~~~d~~~~i~~~~~i~avvl~~d-~~~~~~~~~ll~~ir~~n--~~lPVFl~~~~~~~~~vp~~ 85 (115)
T PF03709_consen 9 LAEALEQTGFEVVYATSTDDALAFIQNNADIAAVVLSWD-PEEHDYSRGLLDEIRRRN--FNLPVFLLAETDTTEDVPAE 85 (115)
T ss_dssp HHCCHHHTTTCEEEESSS----HHHHTTTT-SEEEEE---HHHHCCHHHHHHHHHHCS--TT--EEEEESHHHHHCSSHH
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEC-CCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCCHH
T ss_conf 999999779689985777899999985788228999924-423156999999999858--99998999667762449999
Q ss_pred HHCCCCEEEECCCCHHHHHH-HHHHHHHH
Q ss_conf 96699648657988899999-99999999
Q T0634 95 LHSGADDYLTKPFNRNDLLS-RIEIHLRT 122 (140)
Q Consensus 95 ~~~Ga~dyl~KP~~~~eL~~-~i~~~lr~ 122 (140)
.-.-+++|+-.--+..++.+ +|.+..++
T Consensus 86 ~l~~v~g~i~l~e~t~~fia~~I~~a~~~ 114 (115)
T PF03709_consen 86 VLREVDGFIWLNEDTPEFIARRIEAAARR 114 (115)
T ss_dssp HHCC-SEEEETTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99875353015079989999999999973
No 4
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway .; GO: 0009228 thiamin biosynthetic process; PDB: 2htm_B 2yzr_C 1wv2_B 1tyg_C 1xm3_C.
Probab=92.49 E-value=0.28 Score=25.21 Aligned_cols=100 Identities=11% Similarity=0.078 Sum_probs=65.0
Q ss_pred HHHHHHHHHCCCEEEEEC--CHHHHHHHHHHCCCCEEEEECCCCCCCCHH-----HHHHHHHCCCCCCCCEEEEECCCCH
Q ss_conf 999999987299899985--979999999848998999861368877068-----9999984336899717873167878
Q T0634 16 RIELKNFLDSEYLVIESK--NEKEALEQIDHHHPDLVILDMDIIGENSPN-----LCLKLKRSKGLKNVPLILLFSSEHK 88 (140)
Q Consensus 16 r~~l~~~L~~~~~v~~a~--~~~eal~~~~~~~pdlii~D~~lp~~dG~~-----~~~~ir~~~~~~~iPiI~lta~~~~ 88 (140)
.+.-+.+.+.||.|.... |.--|-.+.+-. --+++=|-=|-++|.. .++.|++.. .+|+|+=.+-+.+
T Consensus 113 l~Aae~Lv~eGF~VlPY~~~D~v~a~rL~d~G--c~avMPlgsPIGSg~Gl~n~~~l~~i~e~~---~vPvIvDAGIG~p 187 (247)
T PF05690_consen 113 LKAAEILVKEGFVVLPYINDDPVLARRLEDAG--CAAVMPLGSPIGSGRGLQNPYNLRIIIERA---DVPVIVDAGIGTP 187 (247)
T ss_dssp HHHHHHHHHTT-EEEEEE-S-HHHHHHHHH------EBEEBSS--------TTHHHHHHHHHHG---SSSBEEEE---SH
T ss_pred HHHHHHHHHCCCEEEECCCCCHHHHHHHHHCC--CCEEEECCCCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCH
T ss_conf 99999998789999423897999999999769--977854467323687769999999999857---9988985798988
Q ss_pred HHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHH
Q ss_conf 8999999669964865-----7988899999999999
Q T0634 89 EAIVNGLHSGADDYLT-----KPFNRNDLLSRIEIHL 120 (140)
Q Consensus 89 ~~~~~a~~~Ga~dyl~-----KP~~~~eL~~~i~~~l 120 (140)
++..++++.|++..|. +--+|..+....+...
T Consensus 188 SdAa~AMElGadaVLvNTAIA~A~dPv~MA~Af~~AV 224 (247)
T PF05690_consen 188 SDAAQAMELGADAVLVNTAIAKAKDPVRMARAFKLAV 224 (247)
T ss_dssp HHHHHHHH----EEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999999736655443357772899899999999999
No 5
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function . The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with PAS IPR000014 from INTERPRO and DUF9 IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 2r6o_A 3gfx_A 3gfz_A 3gfy_B 3gg0_B 3gg1_B 2bas_A 2w27_B.
Probab=87.06 E-value=0.49 Score=23.73 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=62.5
Q ss_pred HHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEECCCC----CCCCHHHHHHHHHCCCCCCCCEEEEECCCCHH
Q ss_conf 9999999872998--99985979999999848998999861368----87706899999843368997178731678788
Q T0634 16 RIELKNFLDSEYL--VIESKNEKEALEQIDHHHPDLVILDMDII----GENSPNLCLKLKRSKGLKNVPLILLFSSEHKE 89 (140)
Q Consensus 16 r~~l~~~L~~~~~--v~~a~~~~eal~~~~~~~pdlii~D~~lp----~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~ 89 (140)
...++.+-+.|+. +.....+...++.+...+||.|-+|..+. +.....+++.+......-++++| .++-++.+
T Consensus 137 ~~~l~~l~~~G~~l~id~~g~~~~~~~~l~~l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~~~ 215 (236)
T PF00563_consen 137 QEFLRRLRSLGFRLAIDDFGSGSNSFEHLQELPPDYIKLDRSLFRDISDPEAQALLKALINLAKSLGIKVI-AEGVENEE 215 (236)
T ss_dssp HHHHHHHHH---EEEEEEE---SB-HHHHHHC--SEEEEEHHHHTTTTSHCHHHHHHHHHHHHHH---EEE-EEEE-SHH
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCCEEEECHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEE-EEECCCHH
T ss_conf 99999997249789994676777630122002461387787776356520447999999999726677179-99818799
Q ss_pred HHHHHHHCCCCEE
Q ss_conf 9999996699648
Q T0634 90 AIVNGLHSGADDY 102 (140)
Q Consensus 90 ~~~~a~~~Ga~dy 102 (140)
....+...|++.+
T Consensus 216 ~~~~~~~lg~~~~ 228 (236)
T PF00563_consen 216 QLEQLKRLGVDYV 228 (236)
T ss_dssp HHHHHHH----EE
T ss_pred HHHHHHHCCCCEE
T ss_conf 9999998599999
No 6
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 1ox4_B 1ox6_A 1jvn_B 1ox5_B 1h5y_B 2agk_A 1vzw_A 2vep_A 2w79_B 1qo2_B ....
Probab=85.85 E-value=0.82 Score=22.35 Aligned_cols=68 Identities=19% Similarity=0.338 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHCCC-CEEEEECCCCCC-CCHHH--HHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 97999999984899-899986136887-70689--9999843368997178731678788999999669964865
Q T0634 34 NEKEALEQIDHHHP-DLVILDMDIIGE-NSPNL--CLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 34 ~~~eal~~~~~~~p-dlii~D~~lp~~-dG~~~--~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~ 104 (140)
+..+.+..+.+... .++++|+.--++ .|+++ ++.+++.. ++|+|.--+-.+.++..++.+.|+++.+.
T Consensus 147 ~~~e~~~~~~~~g~~~ii~t~i~~dGt~~G~d~e~~~~l~~~~---~~pviasGGv~~~~Dl~~l~~~G~~gviv 218 (228)
T PF00977_consen 147 DLEEWAKRLEELGAGEIILTDIDRDGTLQGPDLELIKKLREAV---DIPVIASGGVGSIEDLEELKKAGVDGVIV 218 (228)
T ss_dssp EHHHHHHHHHHCC-CEEEEEETTT----S---HHHHHHHHHHH---SSEEEEE---HSHHHHHHHHHS--CEEEE
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 8999999998559987999515855874658999999999875---98299988999999999999689979998
No 7
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) . Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type , EutT-type and PduO-type . Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represnts the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins . CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin , . ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1g64_B 1g5t_A 1g5r_A.
Probab=83.88 E-value=0.54 Score=23.46 Aligned_cols=60 Identities=25% Similarity=0.269 Sum_probs=41.3
Q ss_pred HHCCCCEEEEEC-----CCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE-----C-CCCHH
Q ss_conf 848998999861-----36887706899999843368997178731678788999999669964865-----7-98889
Q T0634 43 DHHHPDLVILDM-----DIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT-----K-PFNRN 110 (140)
Q Consensus 43 ~~~~pdlii~D~-----~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~-----K-P~~~~ 110 (140)
.+..+|++|+|- ...-.+--+++..|++.|..- =+++|+..-++..... .|+++ | ||+..
T Consensus 93 ~~~~~dlvILDEi~~al~~gli~~eev~~~L~~rp~~~---evVlTGR~~p~~L~e~-----AD~VTem~~vKHp~~~G 163 (172)
T PF02572_consen 93 RSGEYDLVILDEINYALDYGLIDEEEVLDLLKNRPEGM---EVVLTGRNAPEELIEM-----ADLVTEMREVKHPYDKG 163 (172)
T ss_dssp G-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHT--------EEEE------HHHHHH------SEEEEEEECE-CCC--
T ss_pred HCCCCCEEEEECHHHHHHCCCCCHHHHHHHHHHCCCCC---EEEEECCCCCHHHHHH-----CCEEEECCEECCCHHCC
T ss_conf 48999989982358898879946999999998389998---8999799999999985-----86256610143701248
No 8
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis .
Probab=77.12 E-value=1.9 Score=20.08 Aligned_cols=100 Identities=15% Similarity=0.249 Sum_probs=57.3
Q ss_pred CEEEEECCCHHH-HHHHHHHHHC-----CCEEEEECCHHHHHHHHHHCCCCEEEEE---CC------CCCCCC-------
Q ss_conf 636677388899-9999999872-----9989998597999999984899899986---13------688770-------
Q T0634 4 KKILIIDQQDFS-RIELKNFLDS-----EYLVIESKNEKEALEQIDHHHPDLVILD---MD------IIGENS------- 61 (140)
Q Consensus 4 ~rILivDD~~~~-r~~l~~~L~~-----~~~v~~a~~~~eal~~~~~~~pdlii~D---~~------lp~~dG------- 61 (140)
-|||=+|.|+.. ...+..+-+- |+.+.+..-++....+++++.||++++- -. .-+++.
T Consensus 106 GkVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~~qp~~i~~ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyF 185 (287)
T PF05582_consen 106 GKVLHIDGDEEYLKKCLKVYKQLGIPAVGVHIPEKEQPEKIVDLLEEYRPDILVITGHDAYLKNKGDFSDLNNYRNSKYF 185 (287)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHCCCCCHHHHHHHHCCHHH
T ss_conf 61787559899999999999980985489982531261999999986199989996843651277873366665410889
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 689999984336899717873167878899999966996486579
Q T0634 62 PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKP 106 (140)
Q Consensus 62 ~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP 106 (140)
++.++..|+-....+- .++..+.. ...-...+++||| |-+-|
T Consensus 186 veaV~~aR~~~~~~D~-LVIFAGAC-QS~fEail~AGAN-FASSP 227 (287)
T PF05582_consen 186 VEAVKEARKYEPNLDD-LVIFAGAC-QSHFEAILDAGAN-FASSP 227 (287)
T ss_pred HHHHHHHHHCCCCCCC-EEEECCHH-HHHHHHHHHCCCC-CCCCC
T ss_conf 9999999823899542-89982054-7889999971766-44795
No 9
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels). , , . Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases . Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding , but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved , , . It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilizes the RCK homodimer , , . Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue , , . RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 2hmv_A 2hmu_B 2hmt_A 2hms_D 2hmw_A 1lsu_A 3c85_A 3fwz_B 3eyw_A 1id1_A ....
Probab=75.47 E-value=2.1 Score=19.80 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=58.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 3667738889999999998729989998-597999999984899899986136887706899999843368997178731
Q T0634 5 KILIIDQQDFSRIELKNFLDSEYLVIES-KNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~~~~~v~~a-~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lt 83 (140)
++.++|.++.. ...+.+.++.+... .+-.+.|+.+.-...+.+++... .+..-+.+|..+|+.. +..+||..+
T Consensus 23 ~vviv~~~~~~---~~~~~~~~~~~i~gd~~~~~~l~~~~i~~a~~vii~~~-~d~~n~~~~~~~r~~~--~~~~ii~~~ 96 (116)
T PF02254_consen 23 PVVIVDKDPER---IEELREEGVPVIYGDATDEEVLEEAGIEEADAVIILTD-DDEENLLIALTARSLN--PDAKIIARV 96 (116)
T ss_dssp EEEEEESSHHH---HHHHHHHSSEEEE--TTSHHHHHHTTGTTESEEEE-SS-SHHHHHHHHHHHHHHT--TTSEEEEEE
T ss_pred EEEEEECCHHH---HHHHHCCCCEEEEECCCCHHHHHHCCCCCCCEEEEECC-CHHHHHHHHHHHHHHC--CCCEEEEEE
T ss_conf 89999888899---99865068348994266622498769886777999649-8789999999999978--998399998
Q ss_pred CCCCHHHHHHHHHCCCCEEEE
Q ss_conf 678788999999669964865
Q T0634 84 SSEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 84 a~~~~~~~~~a~~~Ga~dyl~ 104 (140)
.+.+......+.|++..+.
T Consensus 97 --~~~~~~~~l~~~g~~~vi~ 115 (116)
T PF02254_consen 97 --DDEENAEILKKLGADVVIS 115 (116)
T ss_dssp --SSHHHHHHHHHT--SEEEE
T ss_pred --CCHHHHHHHHHCCCCEEEC
T ss_conf --9989999999779799979
No 10
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 .; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis; PDB: 1u6i_J 1u6j_F 1qv9_A 1u6k_C.
Probab=75.18 E-value=1.9 Score=20.14 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=53.3
Q ss_pred CCEEEEECCH-----H---HHH-HHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 9989998597-----9---999-999848998999861368877068999998433689971787316787889999996
Q T0634 26 EYLVIESKNE-----K---EAL-EQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLH 96 (140)
Q Consensus 26 ~~~v~~a~~~-----~---eal-~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~ 96 (140)
+-.+..+.+| + ++. ..+.++.||.+|.---=|..-|-.-.+.+-+. .++|.|++|...... ...+++
T Consensus 30 di~vrv~gsGaKM~pe~ve~v~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~---~~iP~ivI~D~p~~k-~~d~~~ 105 (276)
T PF01993_consen 30 DIDVRVVGSGAKMQPEQVERVVTKMLKDWDPDFVIVISPNPAAPGPKKAREMLSA---KGIPCIVISDAPTKK-AKDAMK 105 (276)
T ss_dssp SEEEEEE-ETT--SHHHHHHHHHHHHHHH--SEEEE----TT----HHHHHHHHT---SSS-EEE-------T-THHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH---CCCCEEEECCCCCHH-HHHHHH
T ss_conf 8638984266667878899988999985089989997898889995778999876---699879975886421-588998
Q ss_pred CCCCEEEECCCCH
Q ss_conf 6996486579888
Q T0634 97 SGADDYLTKPFNR 109 (140)
Q Consensus 97 ~Ga~dyl~KP~~~ 109 (140)
....+||.=|.++
T Consensus 106 ~~gfGYIi~k~Dp 118 (276)
T PF01993_consen 106 EQGFGYIIVKADP 118 (276)
T ss_dssp H-----EEETTS-
T ss_pred HCCCCEEEEECCC
T ss_conf 6588579972676
No 11
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan , : L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H_2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) , . The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism. ; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1tjr_B 1rd5_B 1ujp_A 1wxj_A 2ekc_B 1geq_A 2dzw_A 1wdw_G 2dzs_B 2e09_B ....
Probab=71.28 E-value=2.5 Score=19.29 Aligned_cols=46 Identities=11% Similarity=0.255 Sum_probs=27.1
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCC------CHHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 6899999843368997178731678------788999999669964865798889
Q T0634 62 PNLCLKLKRSKGLKNVPLILLFSSE------HKEAIVNGLHSGADDYLTKPFNRN 110 (140)
Q Consensus 62 ~~~~~~ir~~~~~~~iPiI~lta~~------~~~~~~~a~~~Ga~dyl~KP~~~~ 110 (140)
+++++.+|+ ..++|+|++|.++ -.....+|-++|+++.|.-..-++
T Consensus 75 ~~~~~~ir~---~~~~pivlmtY~N~i~~~G~e~F~~~~~~aGv~GvIipDLP~E 126 (259)
T PF00290_consen 75 FEILKEIRK---DPDVPIVLMTYYNPIFQYGVERFLQDAKEAGVDGVIIPDLPPE 126 (259)
T ss_dssp HHHHHHHHH---CSSS-EEEEE-HHHHHHS--HHHHHHHHH----EEEETTSBGG
T ss_pred HHHHHHHHC---CCCCCEEEEECCCHHHHCCHHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 999999744---7998889995340887609999999999849986996899988
No 12
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain has an alpha/beta fold that is a common motif found in several different cobalamin-binding proteins. Proteins containing this domain include: methionine synthase; the small subunit of glutamate mutase ; the alpha and beta subunits of methylmalonyl-CoA mutase; and mono- and tri-methylamine corrinoid proteins (MMCP and TCP, respectively) . In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) . The core structure of the cobalamin domain consists of 5 parallel beta-sheets, surrounded by 4-5 alpha helices in three layers, alpha/beta/alpha . The fold of the domain resembles that of the nucleotide-binding proteins (a Rossman fold). Upon binding B12, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. ; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1be1_A 1id8_A 1fmf_A 1ccw_C 1i9c_A 1cb7_A 1b1a_A 2i2x_B 1y80_A 3bul_A ....
Probab=70.92 E-value=2.7 Score=19.13 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHC-CCEEEEE---CCHHHHHHHHHHCCCCEEEEEC-CCCCC-CCHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 88999999999872-9989998---5979999999848998999861-36887-70689999984336899717873167
Q T0634 12 QDFSRIELKNFLDS-EYLVIES---KNEKEALEQIDHHHPDLVILDM-DIIGE-NSPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
Q Consensus 12 ~~~~r~~l~~~L~~-~~~v~~a---~~~~eal~~~~~~~pdlii~D~-~lp~~-dG~~~~~~ir~~~~~~~iPiI~lta~ 85 (140)
.+.-...+..+|++ ||.|.-. .+.++..+.+++..||+|.+.. ..+.. ...++++.+|+.. ++++|++ -+.
T Consensus 13 ~~lgl~~la~~l~~~G~~v~~l~~~~~~~~~~~~~~~~~pd~v~iS~~~~~~~~~~~~l~~~~k~~~--p~~~ii~-GG~ 89 (121)
T PF02310_consen 13 HPLGLLYLAAYLREAGFEVDILDANASMEDLVAAIRAERPDVVGISVTYTPQIEDAKRLAREIKRRN--PDIKIIV-GGP 89 (121)
T ss_dssp T----HHHHHHHHHGT-EEEEE-CCE-HHHHHHHHHHHTESEEEEEESSCTCCCHHHHHHHHHHC-G--TTSEEEE----
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEE-ECC
T ss_conf 4099999999998789969997998998999999997599899998478684999999999998169--6987999-896
Q ss_pred CCHHHHHHHHH--CCCCEEEEC
Q ss_conf 87889999996--699648657
Q T0634 86 EHKEAIVNGLH--SGADDYLTK 105 (140)
Q Consensus 86 ~~~~~~~~a~~--~Ga~dyl~K 105 (140)
.-...-.+.++ .|+|+.+.-
T Consensus 90 ~~t~~p~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 90 HATANPEEILEDEPGVDYVVIG 111 (121)
T ss_dssp --GHHHHHHHHHHHTS--EE--
T ss_pred CHHCCHHHHHCCCCCCEEECCC
T ss_conf 5215977871437676165578
No 13
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria.; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1yxy_B 1y0e_A.
Probab=67.29 E-value=3.1 Score=18.78 Aligned_cols=84 Identities=17% Similarity=0.112 Sum_probs=51.9
Q ss_pred HHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEC------CCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 999999987299899--985979999999848998999861------368877068999998433689971787316787
Q T0634 16 RIELKNFLDSEYLVI--ESKNEKEALEQIDHHHPDLVILDM------DIIGENSPNLCLKLKRSKGLKNVPLILLFSSEH 87 (140)
Q Consensus 16 r~~l~~~L~~~~~v~--~a~~~~eal~~~~~~~pdlii~D~------~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~ 87 (140)
..+++.+-+.+ ... -.++-++++...+ ..+|+|=.-+ .-+....+++++.+++. .+|+|.=-....
T Consensus 82 ~~lv~~i~~~~-~l~MAD~st~ee~~~A~~-~G~D~VgTTL~GYT~~t~~~~pD~~ll~~l~~~----~~pvIaEG~i~t 155 (192)
T PF04131_consen 82 AELVKEIKEKY-QLLMADCSTLEEAIRAAE-LGFDIVGTTLSGYTEYTKGEGPDFELLRELVEA----GVPVIAEGRIHT 155 (192)
T ss_dssp HHHHHHHHHH--SEEEEE-SSCHHHHHHHH-----EE--TT----TTS--THHHHHHHHHHHH------SEEEE-----S
T ss_pred HHHHHHHHHHC-CCHHHCCCCHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHC----CCCEEEECCCCC
T ss_conf 99999999939-774214698999999998-699999888887789999999878999999977----992998479899
Q ss_pred HHHHHHHHHCCCCEEEEC
Q ss_conf 889999996699648657
Q T0634 88 KEAIVNGLHSGADDYLTK 105 (140)
Q Consensus 88 ~~~~~~a~~~Ga~dyl~K 105 (140)
++...++++.||+..++=
T Consensus 156 Pe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 156 PEQAKKALELGAHAVVVG 173 (192)
T ss_dssp HHHHHHHHC----EEEE-
T ss_pred HHHHHHHHHCCCCEEEEC
T ss_conf 999999997399799989
No 14
>PF09936 DUF2168: Uncharacterized protein conserved in bacteria (DUF2168); PDB: 3dcm_X.
Probab=64.79 E-value=3.6 Score=18.35 Aligned_cols=100 Identities=16% Similarity=0.212 Sum_probs=66.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC---C----C---------EEEEECCHHHHHHHHHH---CCCCEEEEECC-CCCCCCH
Q ss_conf 86366773888999999999872---9----9---------89998597999999984---89989998613-6887706
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS---E----Y---------LVIESKNEKEALEQIDH---HHPDLVILDMD-IIGENSP 62 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~---~----~---------~v~~a~~~~eal~~~~~---~~pdlii~D~~-lp~~dG~ 62 (140)
..+-.||-.-+.++.++..+++- | | .|..+.+-+++++.+++ .+|-+|.++-. -|..-++
T Consensus 41 v~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~~NP~R~eAl~~v~~~~sle~a~~~i~~~~G~~p~iv~TsAr~~~~~is~ 120 (184)
T PF09936_consen 41 VGGYYIVTPLEAQQELVERILRHWTEGYGAEYNPDRKEALSLVRVVSSLEEAIEDIEKETGKRPKIVATSARKGPNTISY 120 (184)
T ss_dssp ----EEE---HHHHHHHHHHHHHHH------S-SSSHHHHTT-EEESSHHHHHHHHHHH-----EEEE--SS--SS-B-S
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCH
T ss_conf 76789968079999999999998634889676978999974620060399999999996199966998116568997389
Q ss_pred HHHHHHHHCCCCCCCCEE--EEECCCCHHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 899999843368997178--731678788999999669964865798889
Q T0634 63 NLCLKLKRSKGLKNVPLI--LLFSSEHKEAIVNGLHSGADDYLTKPFNRN 110 (140)
Q Consensus 63 ~~~~~ir~~~~~~~iPiI--~lta~~~~~~~~~a~~~Ga~dyl~KP~~~~ 110 (140)
+-++.+-... +-|++ +=|+++-.++..+ ..||+..|+...
T Consensus 121 ~~lr~~l~~~---~~P~LllFGTGwGL~~e~~~-----~~D~iLePI~g~ 162 (184)
T PF09936_consen 121 AELREMLKED---ERPVLLLFGTGWGLAPEVME-----QCDYILEPIRGP 162 (184)
T ss_dssp ----HHHHH-----S-EEEEE-------HHHHT-----T-SEEB--TTTT
T ss_pred HHHHHHHHCC---CCCEEEEECCCCCCCHHHHH-----HCCEEECCCCCC
T ss_conf 9999998525---98089996477678899997-----347466344269
No 15
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus subtilis, glycerol-3-P activates the antiterminator GlpP . In Bacillus subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0030528 transcription regulator activity, 0009607 response to biotic stimulus, 0045449 regulation of transcription; PDB: 1vkf_A.
Probab=61.65 E-value=2.6 Score=19.17 Aligned_cols=61 Identities=26% Similarity=0.438 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEC-CCCHHHHHHHHHCCCCEEEE
Q ss_conf 9999999848998999861368877068999998433689971787316-78788999999669964865
Q T0634 36 KEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFS-SEHKEAIVNGLHSGADDYLT 104 (140)
Q Consensus 36 ~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta-~~~~~~~~~a~~~Ga~dyl~ 104 (140)
+.+++.+++..||.|= -||+ =-..+++.+++. -++|||. .| -.+.++..+|+++||...=+
T Consensus 107 ~~~~~~i~~~~PD~vE---iLPG-~~p~iI~~i~~~---~~~PiIA-GGLI~~~edv~~al~aGA~aVST 168 (175)
T PF04309_consen 107 ENGIKQIEKSKPDAVE---ILPG-IMPKIIKEIKKE---TGIPIIA-GGLIRTKEDVIEALKAGAIAVST 168 (175)
T ss_dssp H---HHHHH----EEE---EE----HHHHHCT-------E---EEE------SHHHHHHHCTTSSEE-EE
T ss_pred HHHHHHHHHCCCCEEE---ECCH-HHHHHHHHHHHH---HHHHHHH-CCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 9999998546999999---8876-789999999999---8888312-11106799999999747532356
No 16
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots . This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0006537 glutamate biosynthetic process; PDB: 1llz_A 1ofe_B 1ofd_A 1lm1_A 1llw_A 1ea0_A.
Probab=61.47 E-value=4.1 Score=17.98 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=54.0
Q ss_pred HHHHHHHHHHC-CC-E--E-EEECCHHHHHHH-HHHCCCCEEEEE----------------CCCCCCCCHHHHHH-HHHC
Q ss_conf 99999999872-99-8--9-998597999999-984899899986----------------13688770689999-9843
Q T0634 15 SRIELKNFLDS-EY-L--V-IESKNEKEALEQ-IDHHHPDLVILD----------------MDIIGENSPNLCLK-LKRS 71 (140)
Q Consensus 15 ~r~~l~~~L~~-~~-~--v-~~a~~~~eal~~-~~~~~pdlii~D----------------~~lp~~dG~~~~~~-ir~~ 71 (140)
....+..+-+. +. . + ..+.++.+.+.. ..+..||.|.+| +.+|-..|+..+.. ++..
T Consensus 190 L~~~I~~Lr~~~~~~pVgvKl~~~~~~~~ia~~~~~a~aD~I~IdG~~GGTGAAP~~~~d~~GlP~~~aL~~a~~~L~~~ 269 (368)
T PF01645_consen 190 LAQLIEDLRELNPGKPVGVKLVAGHGVETIAAGVAKAGADFITIDGGEGGTGAAPLTSMDHVGLPWEYALARAHQALVKN 269 (368)
T ss_dssp HHHHHHHHHHH-TTSEEEEEEE-------TT---CCCT-SEEEEE-------EEECCHHHH----TT---HHHHHHHHCT
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999960899978999815885999997546345888999689998776756577507454999999999999976
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 36899717873167878899999966996486
Q T0634 72 KGLKNVPLILLFSSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 72 ~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl 103 (140)
..-..+.+++--+.....+..+++-.|||.+=
T Consensus 270 glR~~V~LiasGgl~t~~Dv~kAlaLGAD~v~ 301 (368)
T PF01645_consen 270 GLRDRVSLIASGGLRTGADVAKALALGADAVN 301 (368)
T ss_dssp T-CCCSEEEE--------HHHHHHH----BB-
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCCCCHHH
T ss_conf 99776399970886899999999973997220
No 17
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325)
Probab=54.02 E-value=5.5 Score=17.20 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=54.9
Q ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEE--CCHHHHHH-HHHH--CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 366773888999999999872-9989998--59799999-9984--8998999861368877068999998433689971
Q T0634 5 KILIIDQQDFSRIELKNFLDS-EYLVIES--KNEKEALE-QIDH--HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~~-~~~v~~a--~~~~eal~-~~~~--~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iP 78 (140)
+||||-..+.....++..++. |+....- .++.+-.+ .+.. ..+|+||+=... -+=..+..+++...-.++|
T Consensus 1 svliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VI~~td~---vsH~~~~~~k~~ak~~~~p 77 (97)
T PF10087_consen 1 SVLIVGGRDDRERNYRRLLEKYGGKFIHHGRDGGFEKKKSRLPSKIKRADLVIVFTDC---VSHNAMWKAKKEAKKYGIP 77 (97)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCC---CCHHHHHHHHHHHHHHCCC
T ss_conf 9999907604258999999986998999955888751446568755899999998076---6979999999999983995
Q ss_pred EEEEECCCCHHHHHHHHH
Q ss_conf 787316787889999996
Q T0634 79 LILLFSSEHKEAIVNGLH 96 (140)
Q Consensus 79 iI~lta~~~~~~~~~a~~ 96 (140)
+++..+.+-. ...++++
T Consensus 78 ~~~~~s~s~s-~l~~~l~ 94 (97)
T PF10087_consen 78 IVFSRSRSLS-SLERALE 94 (97)
T ss_pred EEEECCCCHH-HHHHHHH
T ss_conf 8998898889-9999998
No 18
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity; PDB: 1iy9_B 1jq3_D 1inl_B 2cmh_A 2cmg_A 3bwb_A 3bwc_A 2i7c_B 2pt9_B 2pss_C ....
Probab=50.87 E-value=6.2 Score=16.89 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=49.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC--C-----CEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCC-----CHHHHHHHHH
Q ss_conf 86366773888999999999872--9-----9899985979999999848998999861368877-----0689999984
Q T0634 3 LKKILIIDQQDFSRIELKNFLDS--E-----YLVIESKNEKEALEQIDHHHPDLVILDMDIIGEN-----SPNLCLKLKR 70 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L~~--~-----~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~d-----G~~~~~~ir~ 70 (140)
..+|-+||=|+..-...+.++.. + -.-+...||.+-++...+..+|+||+|..-|... ..++.+.+++
T Consensus 100 ~~~v~~VEiDp~Vi~~a~~~f~~~~~~~~d~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~ 179 (246)
T PF01564_consen 100 VEQVTVVEIDPEVIDLARKYFPENAGSLDDPRVRIIIGDAREFLRRTDEEKYDVIIVDLFDPDGPAANLFTREFYELCKR 179 (246)
T ss_dssp TSEEEEEES-HHHHHHHHHHSHHHHCHTTSTTEEEEESTHHHHHHTSSST-BSEEEESCSSTTESGGGGSSHHHHHHHHH
T ss_pred CEEEEEEECCHHHHHHHHHHCCHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 40699996577898999875701013568994899962989999757467878899928887776500041999999996
Q ss_pred CC
Q ss_conf 33
Q T0634 71 SK 72 (140)
Q Consensus 71 ~~ 72 (140)
.-
T Consensus 180 ~L 181 (246)
T PF01564_consen 180 RL 181 (246)
T ss_dssp HB
T ss_pred HC
T ss_conf 40
No 19
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process; PDB: 1g6c_B 1g4e_B 1g4p_B 1g4t_B 2tps_B 1g69_B 1g67_A 1g4s_B 1xi3_A 3ceu_B ....
Probab=50.08 E-value=6.3 Score=16.81 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=9.9
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 873167878899999966996486
Q T0634 80 ILLFSSEHKEAIVNGLHSGADDYL 103 (140)
Q Consensus 80 I~lta~~~~~~~~~a~~~Ga~dyl 103 (140)
|-.|.++..+ ..++.+.|+|...
T Consensus 98 iG~S~h~~~e-~~~a~~~gaDYi~ 120 (180)
T PF02581_consen 98 IGASCHSLEE-AKEAEDAGADYIF 120 (180)
T ss_dssp -EEEESSHHH-HHHHHHCCSSEEE
T ss_pred EEEECCCHHH-HHHHHHCCCCEEE
T ss_conf 9985699999-9987574969999
No 20
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase
Probab=49.80 E-value=6.4 Score=16.78 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=37.0
Q ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHH-HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 9899985979999999848998999861368877068-999998433689971787316787889999996699648657
Q T0634 27 YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPN-LCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTK 105 (140)
Q Consensus 27 ~~v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~-~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~K 105 (140)
|...--.++.+..+.+ ++.+|+||+|--.-...-.+ ..+.+|.... +..++|..|+....+...+.+..-..+|.++
T Consensus 68 F~fYD~n~p~~~~~~l-~~~~d~vv~DPPFLseec~~k~a~ti~~L~~-~~~kli~~Tg~~~~~~~~~~l~~~~~~F~p~ 145 (162)
T PF10237_consen 68 FVFYDYNEPEDLPEEL-KGKFDVVVADPPFLSEECQEKTAQTIRLLLK-PGGKLILCTGEEMEDWAKKLLGLRMCDFRPE 145 (162)
T ss_pred EEECCCCCHHHHHHHH-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEEHHHHHHHHHHHCCCEEEEEECC
T ss_conf 3562677876758983-6753499989987549999999999999837-8985999709999999999719646556605
No 21
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR016065 This is a family of conserved hypothetical proteins, which includes a putative methylase.; PDB: 1ws6_A 2esr_B 2fhp_A 2ift_A 2fpo_C.
Probab=49.61 E-value=6.4 Score=16.76 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=51.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CC---EEEEECCHHHHHHHHH--HCCCCEEEEECCCCCCCC-HHHHHHHHHCCCCCC
Q ss_conf 6366773888999999999872-99---8999859799999998--489989998613688770-689999984336899
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EY---LVIESKNEKEALEQID--HHHPDLVILDMDIIGENS-PNLCLKLKRSKGLKN 76 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~---~v~~a~~~~eal~~~~--~~~pdlii~D~~lp~~dG-~~~~~~ir~~~~~~~ 76 (140)
.+|..||-++.....++.-++. +. ..+.-.|...++..+. ..++|+|++|---..... .+++..+.+..-...
T Consensus 66 ~~v~~VE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiVflDPPY~~~~~~~~~l~~l~~~~~l~~ 145 (183)
T PF03602_consen 66 KSVVFVEKDPKAAKIIKENLKKLGLSNRIRVIRGDAFRALLRLPKKGEPFDIVFLDPPYAKGLYYEELLEALAENNLLKE 145 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT-GGGEEEEESSHHHHHHHHHHCT--EEEEEE--SSCSCHHHHHHHHHHHHTT-EEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 78999979999999999999983998648999887899998741448980799989997643059999999987899889
Q ss_pred CCEEEEE
Q ss_conf 7178731
Q T0634 77 VPLILLF 83 (140)
Q Consensus 77 iPiI~lt 83 (140)
-.+|++-
T Consensus 146 ~~~ii~E 152 (183)
T PF03602_consen 146 DGIIIIE 152 (183)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
T ss_conf 8699999
No 22
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 1n2s_A 1kbz_A 1kc1_A 1kc3_A 2ggs_A 1vl0_B.
Probab=49.30 E-value=6.5 Score=16.73 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=53.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEC-------CHHHHHHHHHHCCCCEEEEECCCCCCCCH------------H
Q ss_conf 6366773888999999999872-99899985-------97999999984899899986136887706------------8
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EYLVIESK-------NEKEALEQIDHHHPDLVILDMDIIGENSP------------N 63 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~~v~~a~-------~~~eal~~~~~~~pdlii~D~~lp~~dG~------------~ 63 (140)
.||||.-.+-.....+...|.. ++.+.... +..+..+.+++..||.||-=..+-.-++- .
T Consensus 1 MkilI~Ga~G~lG~~l~~~l~~~~~~v~~~~r~~~d~~~~~~v~~~~~~~~pd~VIn~Aa~t~~d~~e~~~~~a~~vN~~ 80 (286)
T PF04321_consen 1 MKILITGASGQLGRALARALEKRGHEVIATSRSQLDLTDPEAVEKLLEDVKPDVVINCAAYTNVDACESNPEEAYLVNVE 80 (286)
T ss_dssp EEEEEE--------HHHHHCTTTSEEEEE-STTC--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECHHHCCHHHHHCCHHHHHHHHHH
T ss_conf 98999999998999999986447988999467603798989999999962999899540113665553187989988999
Q ss_pred HHHHHHHCCCCCCCCEEEEEC
Q ss_conf 999998433689971787316
Q T0634 64 LCLKLKRSKGLKNVPLILLFS 84 (140)
Q Consensus 64 ~~~~ir~~~~~~~iPiI~lta 84 (140)
....|-+.....++++|.+|+
T Consensus 81 ~~~~la~~~~~~~~~li~iST 101 (286)
T PF04321_consen 81 APKNLAEACKEHGARLIHIST 101 (286)
T ss_dssp HHHHHHHHHTTT--EEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEECC
T ss_conf 999999999965990999533
No 23
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyze the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 3cea_A 3ec7_D 3euw_A 3ezy_B 3e18_A 2p2s_A 3dty_B 1tlt_B 1xea_D 3bio_A ....
Probab=47.94 E-value=6.8 Score=16.60 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=56.0
Q ss_pred EEEEECCCHHHHHHHHHHHHC--CCEEEEEC-CHHHHHHH-HHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 366773888999999999872--99899985-97999999-984899899986136887706899999843368997178
Q T0634 5 KILIIDQQDFSRIELKNFLDS--EYLVIESK-NEKEALEQ-IDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
Q Consensus 5 rILivDD~~~~r~~l~~~L~~--~~~v~~a~-~~~eal~~-~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI 80 (140)
||.||-=...-...+..+.+. ++.++... ...+..+. .++.... ...| ...+-+.+ ++=++
T Consensus 2 rv~iIG~G~~~~~~~~~~~~~~~~~~v~av~d~~~~~~~~~~~~~~~~-~~~~-----------~~~~l~~~---~~D~v 66 (120)
T PF01408_consen 2 RVGIIGAGRIGKRHLRALRRSPPGVEVVAVVDPDPERAEAFAKEFGIP-VYTD-----------LEELLEDP---KIDAV 66 (120)
T ss_dssp EEEEECE-THHHHHHHHHHHTTTTEEEEEEESSSHHHHHHHHHHTTSE-EESS-----------HHHHHTHT---TESEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCC-CCCC-----------HHHHHHCC---CCCEE
T ss_conf 899993839999999999964999389999879999999999982997-4288-----------99997255---88989
Q ss_pred EEEC--CCCHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHH
Q ss_conf 7316--78788999999669964865798--889999999999
Q T0634 81 LLFS--SEHKEAIVNGLHSGADDYLTKPF--NRNDLLSRIEIH 119 (140)
Q Consensus 81 ~lta--~~~~~~~~~a~~~Ga~dyl~KP~--~~~eL~~~i~~~ 119 (140)
+++. ....+....++++|.+=|+.||+ +.+++...++..
T Consensus 67 ~I~tp~~~h~~~~~~~l~~g~~V~~EKPl~~~~~e~~~l~~~a 109 (120)
T PF01408_consen 67 IIATPPSSHAEIALAALEAGKHVLVEKPLALSLEEAEELLEAA 109 (120)
T ss_dssp EEES-GGGHHHHHHHHHHCTCEEEEESSSSSSHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9957953499999999982997999858909999999999999
No 24
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR001295 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria .; GO: 0004152 dihydroorotate dehydrogenase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 1uum_B 1uuo_A 3g0u_A 3fj6_A 1d3g_A 2fpt_A 2b0m_A 2prh_A 3f1q_A 2fpv_A ....
Probab=46.75 E-value=7.1 Score=16.49 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=8.9
Q ss_pred CCCEEEEECCCCCCCC
Q ss_conf 9989998613688770
Q T0634 46 HPDLVILDMDIIGENS 61 (140)
Q Consensus 46 ~pdlii~D~~lp~~dG 61 (140)
..|.+-+.+.-|...|
T Consensus 122 ~ad~lElN~ScPn~~~ 137 (293)
T PF01180_consen 122 GADALELNLSCPNTPG 137 (293)
T ss_dssp CHSEEEEESTSTTTT-
T ss_pred CCCEEEEECCCCCCCC
T ss_conf 3999999664688887
No 25
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=40.07 E-value=9.1 Score=15.84 Aligned_cols=66 Identities=14% Similarity=0.258 Sum_probs=40.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC---EEEEECCH-------HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHC
Q ss_conf 636677388899999999987299---89998597-------999999984899899986136887706899999843
Q T0634 4 KKILIIDQQDFSRIELKNFLDSEY---LVIESKNE-------KEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRS 71 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~~~---~v~~a~~~-------~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~ 71 (140)
.||.++-.++.........|+..| .+....+| ++.++.+....||+|++.+..|... .++...++.
T Consensus 49 ~rifllG~~~~~~~~~~~~l~~~yP~l~i~G~~~g~f~~~e~~~i~~~I~~s~pdiv~vglG~PkQE--~~~~~~~~~ 124 (172)
T PF03808_consen 49 KRIFLLGGSEEVLEKAAERLRARYPGLQIVGYYHGYFGPEEEEAIIEAINASGPDIVFVGLGSPKQE--IFIARNRDR 124 (172)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHH--HHHHHHHHH
T ss_conf 8399990988999999999998889971885249999978999999999972969999988998789--999998987
No 26
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product . NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions . The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=39.28 E-value=9.3 Score=15.77 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHC--CCCCCCCEEEEECCCCH
Q ss_conf 87706899999843--36899717873167878
Q T0634 58 GENSPNLCLKLKRS--KGLKNVPLILLFSSEHK 88 (140)
Q Consensus 58 ~~dG~~~~~~ir~~--~~~~~iPiI~lta~~~~ 88 (140)
..+|.++++.+.+. ....-.||++.|+-+..
T Consensus 3 ~~sGV~vlRel~r~~~~~~~~mPVVFTS~Lg~~ 35 (58)
T PF08415_consen 3 SFSGVEVLRELARRGGGRAALMPVVFTSTLGED 35 (58)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf 658899999999845999882558885989997
No 27
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 1h1y_B 1h1z_A 1tqx_A 3cu2_B 3ctl_C 3ct7_E 2fli_B 1tqj_B 1rpx_A.
Probab=38.84 E-value=4 Score=18.08 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHCCCCEEEEECCC----CCCC-CHHHHHHHHHCCCCCCCCE--EEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 97999999984899899986136----8877-0689999984336899717--87316787889999996699648657
Q T0634 34 NEKEALEQIDHHHPDLVILDMDI----IGEN-SPNLCLKLKRSKGLKNVPL--ILLFSSEHKEAIVNGLHSGADDYLTK 105 (140)
Q Consensus 34 ~~~eal~~~~~~~pdlii~D~~l----p~~d-G~~~~~~ir~~~~~~~iPi--I~lta~~~~~~~~~a~~~Ga~dyl~K 105 (140)
+-.+.++.+.+...|.+=+|++= |..+ |..+++.||+. ...|+ -++... -........++||+-+..-
T Consensus 13 ~l~~ei~~l~~~g~d~iHiDvMDG~FVPN~tfg~~~v~~lr~~---~~~~~DvHLMv~~-P~~~i~~~~~aga~~It~H 87 (201)
T PF00834_consen 13 NLEEEIKRLEEAGADWIHIDVMDGHFVPNITFGPPVVKALRKI---TDIPFDVHLMVEN-PERYIEKFADAGADIITFH 87 (201)
T ss_dssp GHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTT---SSSEEEEEEESSS-GGGHHHHHHHSS--EEEEB
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHC---CCCCEEEEEEECC-HHHHHHHHHHHCCCEEEEC
T ss_conf 9999999999769998996343455687734398999999843---8986778765458-8999999998499989986
No 28
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 Members of this family are involved in asparagine-linked protein glycosylation. In particular, dolichyl-diphosphooligosaccharide-protein glycosyltransferase (DDOST), also known as oligosaccharyltransferase (2.4.1.119 from EC), transfers the high-mannose sugar GlcNAc(2)-Man(9)-Glc(3) from a dolichol-linked donor to an asparagine acceptor in a consensus Asn-X-Ser/Thr motif. In most eukaryotes, the DDOST complex is composed of three subunits, which in humans are described as a 48kDa subunit, ribophorin I, and ribophorin II. However, the yeast DDOST appears to consist of six subunits (alpha, beta, gamma, delta, epsilon, zeta). The yeast beta subunit is a 45kDa polypeptide, previously discovered as the Wbp1 protein, with known sequence similarity to the human 48kDa subunit and the other orthologues. This family includes the 48kDa-like subunits from several eukaryotes; it also includes the yeast DDOST beta subunit Wbp1.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein amino acid N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=37.13 E-value=10 Score=15.56 Aligned_cols=93 Identities=18% Similarity=0.119 Sum_probs=50.0
Q ss_pred CCEEEEECCCHHHHHHHHHHH---H-CCCEEEE--ECCHHHHHHHHHHCCCC-EEEEECCCCCC----CCHHHHHHHHHC
Q ss_conf 863667738889999999998---7-2998999--85979999999848998-99986136887----706899999843
Q T0634 3 LKKILIIDQQDFSRIELKNFL---D-SEYLVIE--SKNEKEALEQIDHHHPD-LVILDMDIIGE----NSPNLCLKLKRS 71 (140)
Q Consensus 3 m~rILivDD~~~~r~~l~~~L---~-~~~~v~~--a~~~~eal~~~~~~~pd-lii~D~~lp~~----dG~~~~~~ir~~ 71 (140)
-.|+|++=|+.......+.++ + .||.+.. +.+..-.|....+..|| |||++..-.+. +--.++..+.
T Consensus 16 ~~r~LVv~d~~~~~~~~S~F~~~L~~rg~~lt~~~~~d~~l~L~~~ge~lYDhLIlf~~~~k~~g~~ls~~~ll~Fid-- 93 (440)
T PF03345_consen 16 GSRTLVVLDNDAIKESYSQFFKSLKDRGYELTFKSPKDESLSLFKYGERLYDHLILFPPSSKGFGPSLSPKALLDFID-- 93 (440)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHCCCCCCHHHHHHHHH--
T ss_conf 871899966764224599999999867966899807998740101882003569993675110176789999999986--
Q ss_pred CCCCCCCEEEEECC-CCHHHHHHHHHCCC
Q ss_conf 36899717873167-87889999996699
Q T0634 72 KGLKNVPLILLFSS-EHKEAIVNGLHSGA 99 (140)
Q Consensus 72 ~~~~~iPiI~lta~-~~~~~~~~a~~~Ga 99 (140)
...++ ++++++. .....+.=+.+.|.
T Consensus 94 -~ggNi-lv~~s~~~~~~~ir~ll~E~gi 120 (440)
T PF03345_consen 94 -KGGNI-LVALSSSTIPDAIRSLLNELGI 120 (440)
T ss_pred -CCCCE-EEEECCCCCCHHHHHHHHHCCE
T ss_conf -89969-9995887686899999998794
No 29
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase () (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD^+ + H_2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase () catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP . NADPH + guanosine 5-phosphate = NADP^+ + inosine 5-phosphate + NH_3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity; PDB: 2cu0_A 1ak5_A 1mew_A 1pvn_C 1me7_A 1lrt_B 1meh_A 1me9_A 1me8_A 1mei_A ....
Probab=36.68 E-value=10 Score=15.51 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=45.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCC-CCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 999999984899899986136887-7068999998433689971787316787889999996699648657
Q T0634 36 KEALEQIDHHHPDLVILDMDIIGE-NSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTK 105 (140)
Q Consensus 36 ~eal~~~~~~~pdlii~D~~lp~~-dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~K 105 (140)
.+-.+.+.+...|++++|..-... .-.+.++.||+. ++++|||. =.-...+.....+++||+...+=
T Consensus 110 ~~r~~~l~~agvD~iviD~ahg~s~~v~~~i~~ik~~--~p~v~Via-GNV~T~~~a~~Li~aGAd~vkVG 177 (351)
T PF00478_consen 110 LERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKA--FPDVPVIA-GNVATYEGALDLIRAGADGVKVG 177 (351)
T ss_dssp HHHHHHHHHCT-SEEEE--S---BHHHHHHHHHHHHH--STTSEEEE--E--SHHHHHHHHHS--SEEEE-
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH--CCCCEEEE-CCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 9999999877998999978875578999999999976--79974985-67178999999997599999977
No 30
>PF03060 NPD: 2-nitropropane dioxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor . This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport; PDB: 2gjn_A 2gjl_A 2z6i_A 2z6j_B 3bo9_A 3bw2_A 3bw4_A 3bw3_A.
Probab=36.14 E-value=10 Score=15.46 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=56.6
Q ss_pred HHHHHHHHHCCCEE-EEECCHHHHHHHHHHCCCCEEEEECCCCC----C--CCHHHHHHHHHCCCCCCCCEEEEECCCCH
Q ss_conf 99999998729989-99859799999998489989998613688----7--70689999984336899717873167878
Q T0634 16 RIELKNFLDSEYLV-IESKNEKEALEQIDHHHPDLVILDMDIIG----E--NSPNLCLKLKRSKGLKNVPLILLFSSEHK 88 (140)
Q Consensus 16 r~~l~~~L~~~~~v-~~a~~~~eal~~~~~~~pdlii~D~~lp~----~--dG~~~~~~ir~~~~~~~iPiI~lta~~~~ 88 (140)
...+..+-+.+..+ ..+.+..+|....+ ..+|.+++-=.--+ . +-+.+...+++. .++|||.=-+..+.
T Consensus 122 ~~~v~~l~~~g~~v~~~v~s~~~A~~a~~-~g~D~iv~qG~eAGGH~g~~~~~~~L~~~v~~~---~~ipviaAGGI~~g 197 (323)
T PF03060_consen 122 EELVERLKAAGIKVIPTVTSVKEARKAAK-AGADGIVAQGSEAGGHRGDVGSTFSLLPQVRDA---VDIPVIAAGGIGDG 197 (323)
T ss_dssp HHHHHHHHH---EEEEEESSHHHHHHHHH-----EEEE----------G-G-HHHHHHHHHHH----SS-EEE-------
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH---HCCCEEEECCCCCH
T ss_conf 77889987369779998798899987886-289989995677788898766387899999998---19958998288898
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 8999999669964865
Q T0634 89 EAIVNGLHSGADDYLT 104 (140)
Q Consensus 89 ~~~~~a~~~Ga~dyl~ 104 (140)
.....++..||+....
T Consensus 198 ~~iaaal~lGA~gV~~ 213 (323)
T PF03060_consen 198 RGIAAALALGADGVQM 213 (323)
T ss_dssp --HHHHHH----EEEE
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999999719999998
No 31
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This family represents a conserved region of approximately 180 residues within plant and bacterial monogalactosyldiacylglycerol (MGDG) synthase (2.4.1.46 from EC). In Arabidopsis, there are two types of MGDG synthase which differ in their N-terminal portion: type A and type B .
Probab=36.00 E-value=10 Score=15.45 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=37.8
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE-EEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 9999998489989998613688770689999984336899717-87316787889999996699648657
Q T0634 37 EALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL-ILLFSSEHKEAIVNGLHSGADDYLTK 105 (140)
Q Consensus 37 eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPi-I~lta~~~~~~~~~a~~~Ga~dyl~K 105 (140)
...+.+++.+||+||+=..+|..=. +..+|+....+++|+ -++|-+..... .=+..++|-|++=
T Consensus 80 ~l~~~i~~~~PDvII~Thp~~~~~~---l~~lk~~~~~~~~p~~tVvTD~~~~H~--~W~~~~~D~y~V~ 144 (169)
T PF06925_consen 80 KLRKLIEEYRPDVIISTHPFPAQLP---LSRLKRRGKLKNIPVATVVTDFSTVHP--FWIHPEIDYYFVA 144 (169)
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHH---HHHHHHCCCCCCCCEEEEECCCCCCCC--CCCCCCCCEEEEC
T ss_conf 9999999809599999980322507---899987166789978999756887784--7048998889979
No 32
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 2q6t_B 1q57_E 1e0j_F 1cr1_A 1e0k_F 1cr0_A 1cr2_A 1cr4_A 3bgw_E 3bh0_A ....
Probab=34.06 E-value=11 Score=15.25 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=11.2
Q ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf 848998999861368877068999998
Q T0634 43 DHHHPDLVILDMDIIGENSPNLCLKLK 69 (140)
Q Consensus 43 ~~~~pdlii~D~~lp~~dG~~~~~~ir 69 (140)
.++...+.+..+.||. .++..++-
T Consensus 45 ~~~g~~v~~~SlEm~~---~~~~~R~~ 68 (185)
T PF03796_consen 45 KQHGKNVLYFSLEMSV---EELARRLL 68 (185)
T ss_dssp HTSSSEEEEEESSS-H---HHHHHHHH
T ss_pred HHCCCEEEEEECCCCH---HHHHHHHH
T ss_conf 9659869999577999---99999999
No 33
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure . The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators .; GO: 0048511 rhythmic process; PDB: 1r8j_A 1m2e_A 1m2f_A 1v2z_A 1q6a_B 1suy_A 1sv1_B 1q6b_B 1r5q_A.
Probab=32.86 E-value=12 Score=15.13 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHH--CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 3888999999999872-9989998597999999984--8998999861368877068999998433689971787316
Q T0634 10 DQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDH--HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFS 84 (140)
Q Consensus 10 DD~~~~r~~l~~~L~~-~~~v~~a~~~~eal~~~~~--~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta 84 (140)
=.++.....+..+|.. -|.+....++++.++.+++ +..|++|+-.... -..+...+.+.. --.|+|++-.
T Consensus 7 v~s~~L~q~l~~~L~~dRY~l~~~~s~~e~~~~le~~~e~iDcLive~~~~---~~~~~~~L~~~g--~LLPaVil~~ 79 (283)
T PF07688_consen 7 VSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLIVEQSPL---LPPVFNQLYEQG--ILLPAVILGS 79 (283)
T ss_dssp -S-HHHHHHHHHHT-STTEEEEEE----HHHHHHCCTTTT-SEEEEETTST---THHHHHHHHH--------EEEE--
T ss_pred ECCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCHHHCCEEEEECCCC---CHHHHHHHHHCC--CCCCEEEEEC
T ss_conf 288899999998724685699975857899999985654156799955887---679999999658--2454799705
No 34
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 3c4v_A 3c4q_B 3c48_A 2jjm_G 2iw1_A 2iv7_A 2bis_B 2bfw_A 2r4t_A 3cx4_A ....
Probab=26.30 E-value=15 Score=14.43 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=58.8
Q ss_pred EEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 99985979999999848998999861368877068999998433689971787316787889999996699648657988
Q T0634 29 VIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFN 108 (140)
Q Consensus 29 v~~a~~~~eal~~~~~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~~ 108 (140)
.....+..+....+.. -|+++.=... +.-|..++..+.. .+|+|+ |. .....+.+..|.++++..|.+
T Consensus 77 ~~~~~~~~~~~~~~~~--~di~~~~s~~-e~~~~~l~Ea~~~-----g~pvi~-~~---~~~~~~~~~~~~~g~~~~~~~ 144 (172)
T PF00534_consen 77 FLGFVPHEELPELYRS--ADILLLPSRY-EGFGLKLLEAMAC-----GKPVIA-SD---NGGFSEIIEDGNNGLLVDPND 144 (172)
T ss_dssp E-S--SHHHHHHHHHH--SSEEEE--SS-----HHHHHHHH--------EEEE-ET---THHHTTTHCTTT---EESSSS
T ss_pred ECCCCCCCHHHHHHHH--HHHEEECCCC-CCCCHHHHHHHCC-----CCCEEE-EC---CCCCEEEECCCCEEEEECCCC
T ss_conf 3122221015553322--1100102422-3211012212104-----564289-45---897515871697089977999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999999999
Q T0634 109 RNDLLSRIEIHLRTQNYYSDLRKN 132 (140)
Q Consensus 109 ~~eL~~~i~~~lr~~~~~~~~~~~ 132 (140)
++.+...|..++........+...
T Consensus 145 ~~~l~~~i~~l~~~~~~~~~~~~~ 168 (172)
T PF00534_consen 145 PESLAEAIRKLLENPELRENMGKN 168 (172)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999999999998799999999998
No 35
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) . No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis
Probab=24.43 E-value=17 Score=14.21 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=29.2
Q ss_pred CHHHHHHHHHCCCCCCCCE--EEEECCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 0689999984336899717--873167878899999966996486579
Q T0634 61 SPNLCLKLKRSKGLKNVPL--ILLFSSEHKEAIVNGLHSGADDYLTKP 106 (140)
Q Consensus 61 G~~~~~~ir~~~~~~~iPi--I~lta~~~~~~~~~a~~~Ga~dyl~KP 106 (140)
|.++...-|- ...+++.| ++-|+.-++....+|++.|||+.+.=-
T Consensus 14 aad~aG~~r~-~yp~~vriIrVpC~GrV~~~~il~A~~~GADGV~v~G 60 (124)
T PF02662_consen 14 AADLAGVSRL-QYPPNVRIIRVPCSGRVDPSFILDAFEKGADGVLVAG 60 (124)
T ss_pred HHHHHHHCCC-CCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf 7989705437-8999638997157776699999999983999899958
No 36
>PF05729 NACHT: NACHT domain; InterPro: IPR007111 The NACHT domain is a 300 to 400 residue predicted nucleoside triphosphatase (NTPase) domain, which is found in animal, fungal and bacterial proteins. The NACHT domain has been named after NAIP, CIITA, HET-E and TP1. It is found in association with other domains, such as the CARD domain (IPR001315 from INTERPRO), the DAPIN domain (IPR004020 from INTERPRO), the HEAT repeat (IPR004155 from INTERPRO), the WD repeat (IPR001680 from INTERPRO), the leucine-rich repeat (LRR) or the BIR repeat (IPR001370 from INTERPRO) . The NACHT domain consists of seven distinct conserved motifs, including the ATP/GTPase specific P-loop, the Mg(2+)-binding site (Walker A and B motifs, respectively) and five more specific motifs. The unique features of the NACHT domain include the prevalence of 'tiny' residues (glycine, alanine or serine) directly C-terminal of the Mg(2+)-coordinating aspartate in the Walker B motif, in place of a second acidic residue prevalent in other NTPases. A second acidic residue is typically found in the NACHT-containing proteins two positions downstream. Furthermore, the distal motif VII contains a conserved pattern of polar, aromatic and hydrophobic residues that is not seen in any other NTPase family .
Probab=23.42 E-value=17 Score=14.09 Aligned_cols=84 Identities=18% Similarity=0.233 Sum_probs=45.1
Q ss_pred HHHHHH-HCCCCEEEEEC--CCCCCCCH-------HHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 999998-48998999861--36887706-------899999843368997178731678788999999669964865798
Q T0634 38 ALEQID-HHHPDLVILDM--DIIGENSP-------NLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPF 107 (140)
Q Consensus 38 al~~~~-~~~pdlii~D~--~lp~~dG~-------~~~~~ir~~~~~~~iPiI~lta~~~~~~~~~a~~~Ga~dyl~KP~ 107 (140)
.+..+. ....-++|+|- .++..++. .++..+-.....++.++++.+.........+.+. +..-|-..|+
T Consensus 72 ~~~~~~~~~~~~llvlDglDe~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v~it~r~~~~~~l~~~~~-~~~~~~l~~l 150 (166)
T PF05729_consen 72 VLQELLEQPKRVLLVLDGLDELSREDQQSERNEVLDLLSELLPRKLPPNVKVLITSRPSALEDLESSLE-SFQRIELEPL 150 (166)
T ss_pred HHHHHHHCCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCC-CCCEEEECCC
T ss_conf 999999669938999867788230201134679999999999734799997999985945554488669-9878996996
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 889999999999999
Q T0634 108 NRNDLLSRIEIHLRT 122 (140)
Q Consensus 108 ~~~eL~~~i~~~lr~ 122 (140)
+.++...-++..+..
T Consensus 151 ~~~~~~~~i~~~~~~ 165 (166)
T PF05729_consen 151 SEEEIKQYIRKWLSA 165 (166)
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 999999999997342
No 37
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins . These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homolog of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0016020 membrane; PDB: 2q9a_A 2q9c_B 2cnw_F 2q9b_B 2iyl_D 1rj9_A 1okk_D 2j7p_E 2px0_A 2px3_A ....
Probab=22.48 E-value=18 Score=13.97 Aligned_cols=94 Identities=21% Similarity=0.224 Sum_probs=50.1
Q ss_pred HHHHHHHHHHC-CCEEEEECC---HH----HHHHHHHHCCCCEEEEECC--CCC-CCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 99999999872-998999859---79----9999998489989998613--688-7706899999843368997178731
Q T0634 15 SRIELKNFLDS-EYLVIESKN---EK----EALEQIDHHHPDLVILDMD--IIG-ENSPNLCLKLKRSKGLKNVPLILLF 83 (140)
Q Consensus 15 ~r~~l~~~L~~-~~~v~~a~~---~~----eal~~~~~~~pdlii~D~~--lp~-~dG~~~~~~ir~~~~~~~iPiI~lt 83 (140)
-.+.++.+-+. +-.+..+.+ +. ++++...+...|+|++|-. .|. .+-++-++.+.... .+.-.+++++
T Consensus 44 a~eQLk~ya~~l~vp~~~~~~~~d~~~~~~~~l~~~~~~~~d~VLIDTaGr~~~~~~~~~el~~~~~~~-~~~~~~LVls 122 (196)
T PF00448_consen 44 AVEQLKTYAEILGVPFISARTESDPAAIAKEALEEAASRGFDLVLIDTAGRSPRDEELMEELRKLLRVI-EPDEVLLVLS 122 (196)
T ss_dssp HHHHHHHHHHHTTCEEEECTSCCCHHHHHHHHHHHHHHTTSSEEEEEE-S-GSTHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC-CCCEEEEEEC
T ss_conf 999999999980982671456789999999999999967999999968887757699999999984116-9987999963
Q ss_pred CCCCHHHH---HHHHH-CCCCEEEECCCCH
Q ss_conf 67878899---99996-6996486579888
Q T0634 84 SSEHKEAI---VNGLH-SGADDYLTKPFNR 109 (140)
Q Consensus 84 a~~~~~~~---~~a~~-~Ga~dyl~KP~~~ 109 (140)
+....+.. .+..+ .|.+..+.--+|.
T Consensus 123 a~~~~~~~~~~~~f~~~~~~~~~IlTKlDe 152 (196)
T PF00448_consen 123 ATTGQEDLEQARAFFSALGIDGLILTKLDE 152 (196)
T ss_dssp TTB-HTHHHHHHHHHHHSS-SEEEEESGGG
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 655837899999986106987478875315
No 38
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1fq0_B 1eun_C 1fwr_B 1eua_C 2c0a_C 1wbh_C 1wau_A 1mxs_A 2v82_A 2v81_A ....
Probab=20.13 E-value=20 Score=13.67 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=26.1
Q ss_pred EEEECCHHHHHHHHH---HCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEC-CCCHHHHHHHHHCCCC
Q ss_conf 999859799999998---48998999861368877068999998433689971787316-7878899999966996
Q T0634 29 VIESKNEKEALEQID---HHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFS-SEHKEAIVNGLHSGAD 100 (140)
Q Consensus 29 v~~a~~~~eal~~~~---~~~pdlii~D~~lp~~dG~~~~~~ir~~~~~~~iPiI~lta-~~~~~~~~~a~~~Ga~ 100 (140)
|+...+.++++...+ +....+ +.+.+-..+++++++.+++. .+++- +=.+ --+.+...++.++||+
T Consensus 13 Vir~~~~~~a~~~~~al~~gGi~~--iEiT~~t~~a~~~I~~l~~~--~p~~~--iGAGTV~~~~~~~~a~~aGA~ 82 (196)
T PF01081_consen 13 VIRGDDAEDALPIAEALIEGGIRV--IEITLRTPNALEAIEALRKE--YPDLL--IGAGTVLTAEQAEAAIDAGAE 82 (196)
T ss_dssp EE--SSGGGHHHHHHHHHH----B--EEE-TTSTTHHHHHHHHHHH--HTTSB--EEE-B--SHHHHHHHHH----
T ss_pred EEECCCHHHHHHHHHHHHHCCCCE--EEEECCCCCHHHHHHHHHHH--CCCCE--EEEEECCCHHHHHHHHHCCCC
T ss_conf 997799999999999999879988--99968983199999999987--89978--957828589999999985999
No 39
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production .; GO: 0008171 O-methyltransferase activity; PDB: 2gpy_A 3dr5_A 3c3y_A 1sui_C 1sus_B 2hnk_B 2avd_A 3cbg_A 3bwy_A 3bwm_A ....
Probab=20.13 E-value=20 Score=13.67 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=43.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CC--EE-EEECCHHHHHHHHHHC----CCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 6366773888999999999872-99--89-9985979999999848----99899986136887706899999
Q T0634 4 KKILIIDQQDFSRIELKNFLDS-EY--LV-IESKNEKEALEQIDHH----HPDLVILDMDIIGENSPNLCLKL 68 (140)
Q Consensus 4 ~rILivDD~~~~r~~l~~~L~~-~~--~v-~~a~~~~eal~~~~~~----~pdlii~D~~lp~~dG~~~~~~i 68 (140)
-+|.-+|-++......+..++. |+ .+ ....++.+.+..+... ++|+|++|-.=. +-...+..+
T Consensus 71 g~i~tie~~~~~~~~a~~~~~~ag~~~~i~~~~g~a~~~L~~l~~~~~~~~fD~vFiDa~k~--~y~~~~e~~ 141 (205)
T PF01596_consen 71 GKIVTIEIDPEYAEIARENFKKAGLSDRIELIVGDALDTLPELANDGEQGQFDFVFIDADKS--NYLNYFELA 141 (205)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHHHHCCTSSSBSEEEEESTGG--GHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHH
T ss_conf 64999833468899999999865987748998636788999987503677243999748777--789999999
Done!