Query T0635 3N1U, , 191 residues
Match_columns 191
No_of_seqs 169 out of 5591
Neff 6.7
Searched_HMMs 11830
Date Thu Jul 22 15:12:08 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0635.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0635.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08282 Hydrolase_3: haloacid 99.8 1E-19 8.8E-24 148.8 10.3 131 22-163 1-254 (254)
2 PF05116 S6PP: Sucrose-6F-phos 99.3 6.9E-13 5.8E-17 103.4 6.0 76 89-165 160-244 (247)
3 PF00702 Hydrolase: haloacid d 98.8 1.2E-08 1E-12 75.2 9.0 77 54-130 108-192 (192)
4 PF09419 DUF2010: Protein of u 98.6 7.8E-09 6.6E-13 76.4 4.1 114 15-138 37-166 (168)
5 PF06888 Put_Phosphatase: Puta 98.6 3.4E-08 2.9E-12 72.2 7.0 92 55-147 80-208 (234)
6 PF08645 PNK3P: Peptide-N-glyc 97.7 7.3E-06 6.2E-10 56.6 2.7 103 20-122 1-129 (158)
7 PF02358 Trehalose_PPase: Treh 97.4 8.7E-05 7.4E-09 49.5 4.5 60 93-152 164-233 (235)
8 PF08235 LNS2: LNS2 (Lipin/Ned 97.2 0.00082 6.9E-08 43.0 8.1 108 22-133 2-142 (157)
9 PF03767 Acid_phosphat_B: HAD 97.1 2E-05 1.7E-09 53.8 -0.8 109 17-129 70-211 (229)
10 PF11019 DUF2608: Protein of u 96.4 0.013 1.1E-06 35.1 9.3 122 8-129 6-197 (252)
11 PF06437 ISN1: IMP-specific 5' 96.1 0.0033 2.8E-07 39.0 4.6 60 17-84 145-204 (409)
12 PF03031 NIF: NLI interacting 94.7 0.0089 7.5E-07 36.1 3.0 111 20-135 1-122 (148)
13 PF05822 UMPH-1: Pyrimidine 5' 94.5 0.008 6.7E-07 36.4 2.5 120 47-167 89-246 (246)
14 PF05761 5_nucleotid: 5' nucle 89.9 0.42 3.5E-05 25.0 6.3 83 53-135 190-323 (448)
15 PF00702 Hydrolase: haloacid d 89.2 0.035 3E-06 32.1 0.4 15 19-33 1-15 (192)
16 PF06189 5-nucleotidase: 5'-nu 86.3 0.46 3.9E-05 24.7 4.7 66 54-127 172-249 (264)
17 PF05152 DUF705: Protein of un 85.8 0.88 7.5E-05 22.8 6.0 91 20-120 123-255 (297)
18 PF00875 DNA_photolyase: DNA p 73.9 1.8 0.00015 20.7 4.3 65 56-122 60-130 (166)
19 PF03332 PMM: Eukaryotic phosp 58.4 1.5 0.00012 21.3 1.3 55 87-144 155-214 (220)
20 PF06941 NT5C: 5' nucleotidase 41.9 2.9 0.00025 19.3 0.7 13 22-34 5-17 (191)
21 PF00696 AA_kinase: Amino acid 38.8 1.5 0.00013 21.3 -1.3 27 55-82 25-51 (243)
22 PF06014 DUF910: Bacterial pro 31.3 5.8 0.00049 17.3 0.8 27 98-128 6-32 (62)
23 PF02445 NadA: Quinolinate syn 30.9 12 0.001 15.2 2.4 52 110-165 67-132 (296)
24 PF05240 APOBEC_C: APOBEC-like 25.5 16 0.0013 14.4 2.2 19 53-71 6-24 (55)
25 PF00389 2-Hacid_dh: D-isomer 25.0 16 0.0014 14.3 3.9 80 53-134 15-104 (150)
26 PF01861 DUF43: Protein of unk 22.6 18 0.0015 14.0 3.4 12 74-85 81-92 (243)
27 PF04413 Glycos_transf_N: 3-De 21.3 19 0.0016 13.9 4.5 24 55-78 111-134 (186)
28 PF03377 Avirulence: Xanthomon 20.9 20 0.0017 13.8 2.9 59 105-165 269-329 (385)
29 PF07287 DUF1446: Protein of u 20.2 20 0.0017 13.7 5.4 78 8-86 14-100 (362)
No 1
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification . This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate ; PDB: 2rav_A 2rar_A 2rbk_A 2rb5_A 1ymq_A 2qyh_D 2pq0_B 3fzq_B 1nf2_B 1k1e_F ....
Probab=99.80 E-value=1e-19 Score=148.82 Aligned_cols=131 Identities=28% Similarity=0.408 Sum_probs=110.1
Q ss_pred EEECCCCEEECCEEEECCCCCEEEEEECCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCHH--------------
Q ss_conf 886037353568568878985798863224899999997299899973871789999998722011--------------
Q T0635 22 LICDVDGVLSDGLLHIDNHGNELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITH-------------- 87 (191)
Q Consensus 22 vv~DvDGvLTdg~i~~~~~Gee~k~~~~~D~~aI~~Lk~~Gi~v~IISg~~~~~v~~~~~~lgi~~-------------- 87 (191)
+++|+||||.+ .++ .++.+...+|+.|++.|+++.+.||+....+..+.+++++..
T Consensus 1 i~~DlDGTLl~------~~~----~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~~~~ 70 (254)
T PF08282_consen 1 IASDLDGTLLN------SNG----KISDETIEALKKLKEKGIKFVIATGRSYRSIRPILKELGLDDPIICCNGALIDDKN 70 (254)
T ss_dssp EEEESCTTTS-------TTS----SSCHHHHHHHHHHHHTTSEEEEE-SSTHHHHHHHHHHHTHCSEEEE----EEEEST
T ss_pred CEEECCCCCCC------CCC----CCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCEEECCCCEEECCC
T ss_conf 98952777215------979----51999999999997589799997599889999999987530304514886664377
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q T0635 88 -------------------------------------------------------------------------------- 87 (191)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (191)
T Consensus 71 ~~~i~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~ 150 (254)
T PF08282_consen 71 GEIIFSKPISKDVVQEIIDILEKHNIQFFIYTDDGIYINNPNSDEQFFQEHFSFDFLELIDSDDDLDEEDIIKILIFGDP 150 (254)
T ss_dssp TTEEEE--B-HHHHHHHHHHHHHTTHEEEEECSSCEEEETTCHHHHHHHHHHCTTSSEEECHHHHHHSSSESEEEEES-H
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCEEEEEEEECCEEEECCCCHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEECCCH
T ss_conf 55001432163888999999986261599995033675054301466666413455532365545156772688712777
Q ss_pred -----------------------------HHCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCHHHHHHCCCEEECCCC
Q ss_conf -----------------------------211510268999999984078844888773684334899857911514887
Q T0635 88 -----------------------------YYKGQVDKRSAYQHLKKTLGLNDDEFAYIGDDLPDLPLIQQVGLGVAVSNA 138 (191)
Q Consensus 88 -----------------------------i~~~~~dK~~~l~~l~~~~gi~~~ev~~iGD~~nD~~~l~~ag~~~a~~~A 138 (191)
+.+...+|+.+++.+++.+|+++++++++||+.||++||+.||+|+||+||
T Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ei~~~gvsKg~al~~l~~~~~i~~~~v~~~GD~~NDi~Ml~~a~~svam~na 230 (254)
T PF08282_consen 151 EEIDQLREELKEKFPDKISVVRSGPYFLEITPKGVSKGSALKYLAEHLGISLEEVIAFGDSENDIEMLEAAGYSVAMGNA 230 (254)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEETTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEE---GGGHHHHHHSSEEEEETTS
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCHHHEEEECCCCCCHHHHHCCCCEEEECCC
T ss_conf 88999999987523771699995286789996776579899999986299878947864764567788438938995688
Q ss_pred CHHHHHHCCHHCCCCCCCCHHHHHH
Q ss_conf 4889986440004898870698899
Q T0635 139 VPQVLEFADWRTERTGGRGAVRELC 163 (191)
Q Consensus 139 ~~~ik~~a~~v~~~~gg~Gavre~~ 163 (191)
.|++|+.|+||++++.-.| |++++
T Consensus 231 ~~~vk~~A~~v~~~~~~~g-va~~i 254 (254)
T PF08282_consen 231 PPEVKKAADYVTPSNNEDG-VAKAI 254 (254)
T ss_dssp -HHHHHHSSEEESSGGG---HHHHH
T ss_pred CHHHHHHCCEECCCCCCCH-HHHHC
T ss_conf 9999984898827899870-78659
No 2
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria . SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 3gyg_B 1tj4_A 1u2t_A 2d2v_A 1u2s_A 1s2o_A 1tj3_A 2b1r_A 2b1q_A 1tj5_A.
Probab=99.33 E-value=6.9e-13 Score=103.41 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=62.8
Q ss_pred HCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCHHHHHHCCCEEECCCCCHH-----HHHHCC----HHCCCCCCCCHH
Q ss_conf 11510268999999984078844888773684334899857911514887488-----998644----000489887069
Q T0635 89 YKGQVDKRSAYQHLKKTLGLNDDEFAYIGDDLPDLPLIQQVGLGVAVSNAVPQ-----VLEFAD----WRTERTGGRGAV 159 (191)
Q Consensus 89 ~~~~~dK~~~l~~l~~~~gi~~~ev~~iGD~~nD~~~l~~ag~~~a~~~A~~~-----ik~~a~----~v~~~~gg~Gav 159 (191)
.+...+|..++..+++++++++++|+++||+-||++||.....+++|+||.|+ ++.... |+++.++-.| +
T Consensus 160 lP~~asK~~Al~yL~~~~~i~~~~vvvaGDSgND~~mL~~~~~~vvV~Na~~e~~~~~~~~~~~~~~~y~a~~~~a~G-I 238 (247)
T PF05116_consen 160 LPKRASKGQALRYLAERWGIPLENVVVAGDSGNDLEMLIGGHRGVVVGNADPELLQWLLEALRSQHRVYFAKGSYAAG-I 238 (247)
T ss_dssp EETT---HHHHHHHHHHHT--GGGEEEE------HHHCCCS-B--B-TTS-HHHHHHHHHCC-TT----B-SS------H
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHEEEEECCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCHH-H
T ss_conf 129899899999999994979554999927855799966798789977988788888986224578438627877189-9
Q ss_pred HHHHHH
Q ss_conf 889999
Q T0635 160 RELCDL 165 (191)
Q Consensus 160 re~~e~ 165 (191)
.|.+.+
T Consensus 239 legl~h 244 (247)
T PF05116_consen 239 LEGLKH 244 (247)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999987
No 3
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2b8e_A 2voy_J 3ed5_A 2w4m_A 2gfh_A 1x42_A 2om6_A 2no4_A 2no5_B 1zrn_A ....
Probab=98.80 E-value=1.2e-08 Score=75.19 Aligned_cols=77 Identities=27% Similarity=0.462 Sum_probs=69.1
Q ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHHCC--------CHHHHHHHHHHHHHHCCCHHHEEEEECCCCCHHH
Q ss_conf 99999972998999738717899999987220112115--------1026899999998407884488877368433489
Q T0635 54 GLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKG--------QVDKRSAYQHLKKTLGLNDDEFAYIGDDLPDLPL 125 (191)
Q Consensus 54 aI~~Lk~~Gi~v~IISg~~~~~v~~~~~~lgi~~i~~~--------~~dK~~~l~~l~~~~gi~~~ev~~iGD~~nD~~~ 125 (191)
.++.|++.|++++++|++....++..++.+++...+.. .++|+..+..++++++++++++++|||+.||++|
T Consensus 108 ~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~d~~a 187 (192)
T PF00702_consen 108 LLEKLKERGIKVAIVSNDNRESAEAVLEKLGLADYFDYIVCSDDVKGKPKPEIFEAALERLGLDPEEVLMVGDSLNDDEA 187 (192)
T ss_dssp HHHHHHHTTSEEEEEESSSHHHHHHHHHHTTHGGGHSEEEETTTSSCTTSHHHHHHHHHHHTTTGGGEEEEESSHHHHHH
T ss_pred HHHHHHHHCCCEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH
T ss_conf 99999873343064338854210100123333322222210000001201799999999958999879998489869999
Q ss_pred HHHCC
Q ss_conf 98579
Q T0635 126 IQQVG 130 (191)
Q Consensus 126 l~~ag 130 (191)
++.||
T Consensus 188 ~~~AG 192 (192)
T PF00702_consen 188 AAKAG 192 (192)
T ss_dssp HHHST
T ss_pred HHHCC
T ss_conf 99683
No 4
>PF09419 DUF2010: Protein of unknown function
Probab=98.65 E-value=7.8e-09 Score=76.42 Aligned_cols=114 Identities=21% Similarity=0.244 Sum_probs=82.1
Q ss_pred HHHHCCEEEECCCCEEECCEEEECCCCCEEEEEECCHHHHHHHHHHCCC--EEEEECCC-------CHHHHHHHHHHHCC
Q ss_conf 9851968886037353568568878985798863224899999997299--89997387-------17899999987220
Q T0635 15 KAKKIKCLICDVDGVLSDGLLHIDNHGNELKSFHVQDGMGLKLLMAAGI--QVAIITTA-------QNAVVDHRMEQLGI 85 (191)
Q Consensus 15 ~~~~Iklvv~DvDGvLTdg~i~~~~~Gee~k~~~~~D~~aI~~Lk~~Gi--~v~IISg~-------~~~~v~~~~~~lgi 85 (191)
+.++||+++||+|+||+.-. .+ .+...-...++.+++.+. ++.|+|+. ....++.+.+.+++
T Consensus 37 ~~~GIk~lv~D~DNTL~~~~---~~------~~~~~~~~~l~~lk~~~~~~~v~IVSNnags~~~~~~~~~~~~~~~lgi 107 (168)
T PF09419_consen 37 KKRGIKALVFDKDNTLTPPH---EP------EIPPEVKEWLNELKKAFGKDKVLIVSNNAGSRDDPDGERAKAFEKKLGI 107 (168)
T ss_pred HHCCCCEEEECCCCCCCCCC---CC------CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 66697689986788678899---88------7998999999999987799629999899765567458999999986498
Q ss_pred HHHHCCCHHHHHHHHHHHHHH-----CCCHHHEEEEECC-CCCHHHHHHCC-CEEECCCC
Q ss_conf 112115102689999999840-----7884488877368-43348998579-11514887
Q T0635 86 THYYKGQVDKRSAYQHLKKTL-----GLNDDEFAYIGDD-LPDLPLIQQVG-LGVAVSNA 138 (191)
Q Consensus 86 ~~i~~~~~dK~~~l~~l~~~~-----gi~~~ev~~iGD~-~nD~~~l~~ag-~~~a~~~A 138 (191)
..+.... .|+....++++.+ ..+++|+++|||- ..|+-+..+.| +++-+.++
T Consensus 108 ~v~~~~~-kKP~~~~~~l~~~~~~~~~~~p~eiavVGDrlfTDVl~gNr~G~~tIlv~~g 166 (168)
T PF09419_consen 108 PVLRHSA-KKPGCFREILKYFGCKKVVTKPSEIAVVGDRLFTDVLGGNRMGMYTILVTEG 166 (168)
T ss_pred CEEEECC-CCCCCHHHHHHHHHHCCCCCCCHHEEEECCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 3797158-7997899999999753257881126898656787799765159679998378
No 5
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR006384 This group of sequences belong to the IB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. With exceptions from Bacillus subtilis and Clostridium acetabutylicum, the members of this group are all eukaryotic, spanning metazoa, plants and fungi.
Probab=98.63 E-value=3.4e-08 Score=72.16 Aligned_cols=92 Identities=18% Similarity=0.305 Sum_probs=71.6
Q ss_pred HHHH--HHCCCEEEEECCCCHHHHHHHHHHHCCHHHH----CC-------------------C------HHHHHHHHHHH
Q ss_conf 9999--9729989997387178999999872201121----15-------------------1------02689999999
Q T0635 55 LKLL--MAAGIQVAIITTAQNAVVDHRMEQLGITHYY----KG-------------------Q------VDKRSAYQHLK 103 (191)
Q Consensus 55 I~~L--k~~Gi~v~IISg~~~~~v~~~~~~lgi~~i~----~~-------------------~------~dK~~~l~~l~ 103 (191)
++.+ .+.|+.+.|||.+++...+..+++.++.+.+ +| + ..|...+.++.
T Consensus 80 ~~~~~~~~~~~~~~IvSdgn~~fI~~iL~~~~i~~~f~~I~sN~~~~d~~G~l~i~py~~~~C~~c~~n~CK~~vl~~~~ 159 (234)
T PF06888_consen 80 LKFCAKNENGIDFIIVSDGNDFFIEEILEHHGIEDCFSEIYSNPAHFDDNGELRIFPYHDHSCDLCPSNMCKGKVLEEYK 159 (234)
T ss_pred HHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCHHCCEEEECCCEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99998616899789995784899999999659500011478677266688619988530456377886566699999999
Q ss_pred HHH---CCCHHHEEEEECCCCCHHHHH---HCCCEEECCCCCHHHHHHCC
Q ss_conf 840---788448887736843348998---57911514887488998644
Q T0635 104 KTL---GLNDDEFAYIGDDLPDLPLIQ---QVGLGVAVSNAVPQVLEFAD 147 (191)
Q Consensus 104 ~~~---gi~~~ev~~iGD~~nD~~~l~---~ag~~~a~~~A~~~ik~~a~ 147 (191)
... |.+.+.++|||||.||+..+. .+++-++ +.+-+..+..+.
T Consensus 160 ~~~~~~g~~~~~viYvGDG~sD~cp~~~l~~~D~vfa-R~g~~l~~~~~~ 208 (234)
T PF06888_consen 160 ANQAQDGVPYPRVIYVGDGVSDFCPALRLREADVVFA-RKGYPLHKLIQK 208 (234)
T ss_pred HHHHHCCCCCCEEEEECCCCCCCCHHHCCCCCCEEEE-CCCCHHHHHHHH
T ss_conf 8665038876649998899722172004876888986-899869999974
No 6
>PF08645 PNK3P: Peptide-N-glycosidase F, N terminal Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin . ; PDB: 1pnf_A 1png_A 1pgs_A 1yj5_B 2fpx_A 2fpw_A 2fps_B 2fpu_A 2fpr_B.
Probab=97.69 E-value=7.3e-06 Score=56.65 Aligned_cols=103 Identities=19% Similarity=0.212 Sum_probs=64.7
Q ss_pred CEEEECCCCEEECCEE--EECCCCCEEEEEECCHHHHHHHHHHCCCEEEEECCC------CHHHH-------HHHHHHHC
Q ss_conf 6888603735356856--887898579886322489999999729989997387------17899-------99998722
Q T0635 20 KCLICDVDGVLSDGLL--HIDNHGNELKSFHVQDGMGLKLLMAAGIQVAIITTA------QNAVV-------DHRMEQLG 84 (191)
Q Consensus 20 klvv~DvDGvLTdg~i--~~~~~Gee~k~~~~~D~~aI~~Lk~~Gi~v~IISg~------~~~~v-------~~~~~~lg 84 (191)
|.+.||.||||....- .+..+.+..+-+...-..+++.|+++|+++.|+|+- ..... ..+++.++
T Consensus 1 KIa~fDrDGTLi~~~s~~~~~~~~~d~~~~~~~v~~~l~~l~~~Gy~ivIvTNQ~Gi~~g~~~~~~~~~~~i~~l~~~l~ 80 (158)
T PF08645_consen 1 KIAFFDRDGTLIKTKSGKVFPKDPEDWILLPPGVIEALKKLKDAGYKIVIVTNQSGIGRGGEEDLEAFHEKINELLKELG 80 (158)
T ss_dssp -EEEE------EE--T-TTS-SSTCGGEEC-TTHHHHHHHHHH---EEEEEEE------T-HHHHHHHHHHHHHHHHH--
T ss_pred CEEEEECCCCCCCCCCCCCCCCCHHHCEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 98999679965787987756689888513262299999999658998999979840247862009999999999999869
Q ss_pred CHHHHC-C------CHHHHHHHHHHHHHHCC----CHHHEEEEECCCCC
Q ss_conf 011211-5------10268999999984078----84488877368433
Q T0635 85 ITHYYK-G------QVDKRSAYQHLKKTLGL----NDDEFAYIGDDLPD 122 (191)
Q Consensus 85 i~~i~~-~------~~dK~~~l~~l~~~~gi----~~~ev~~iGD~~nD 122 (191)
+..... . .+++...+..+++++++ +.++..||||..+|
T Consensus 81 ~~~~~y~~~~~d~cRKP~~GM~~~~~~~~~~~~~iD~~~S~~VGD~~~~ 129 (158)
T PF08645_consen 81 IPIIIYCAPHHDSCRKPNPGMWEQAAKDYNLGIKIDLSNSFMVGDAAGD 129 (158)
T ss_dssp --EEEEECGG--SSSTTSSGGHHHHCCTTS----S-CCC-EEE---HHH
T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf 9789997899878889838999999986654556770112897147788
No 7
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants . The trehalose-phosphatase signature is found in the C-terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes .; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1u02_A.
Probab=97.35 E-value=8.7e-05 Score=49.47 Aligned_cols=60 Identities=25% Similarity=0.363 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHCCC---HHHEEEEECCCCCHHHHHHCC------CEEECCCCC-HHHHHHCCHHCCC
Q ss_conf 02689999999840788---448887736843348998579------115148874-8899864400048
Q T0635 93 VDKRSAYQHLKKTLGLN---DDEFAYIGDDLPDLPLIQQVG------LGVAVSNAV-PQVLEFADWRTER 152 (191)
Q Consensus 93 ~dK~~~l~~l~~~~gi~---~~ev~~iGD~~nD~~~l~~ag------~~~a~~~A~-~~ik~~a~~v~~~ 152 (191)
.+|+.+++.+++.++.. +.-++|+||+..|-.||+.+. +++-++... ..-...|.|-+..
T Consensus 164 ~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~TDE~~F~~~~~~~~~g~~i~v~~~~~g~~~T~A~~~l~~ 233 (235)
T PF02358_consen 164 VNKGSAVERLLERLPFENSKGDFVLFAGDDTTDEDAFRALNELPEGGVGIKVGSVSVGSKPTAAKYRLDD 233 (235)
T ss_dssp -----HHHHH-------------EEEE---HHHHHHHHTTTTS----EEEE-------------------
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8819999999987110113323249982898679999998861355555000222221111111122235
No 8
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins . SMP2 is involved in plasmid maintenance and respiration . Lipin proteins are involved in adipose tissue development and insulin resistance .
Probab=97.20 E-value=0.00082 Score=42.99 Aligned_cols=108 Identities=16% Similarity=0.263 Sum_probs=70.7
Q ss_pred EEECCCCEEECCEEE---ECCCCCEEEEEECCHHHH--HHHHHHCCCEEEEECCCCH---HHHHHHHHHH-----CCHH-
Q ss_conf 886037353568568---878985798863224899--9999972998999738717---8999999872-----2011-
Q T0635 22 LICDVDGVLSDGLLH---IDNHGNELKSFHVQDGMG--LKLLMAAGIQVAIITTAQN---AVVDHRMEQL-----GITH- 87 (191)
Q Consensus 22 vv~DvDGvLTdg~i~---~~~~Gee~k~~~~~D~~a--I~~Lk~~Gi~v~IISg~~~---~~v~~~~~~l-----gi~~- 87 (191)
|++|||||+|..-+. .+--|+- -.+.|.+ ...+++.|+++.-+|++.. ..++..+... ++++
T Consensus 2 ViSDIDGTiTkSD~~g~v~~~~G~D----w~h~Gva~l~~~i~~nGY~iiYLTaRp~~qa~~Tr~~L~~~~q~~~~lP~G 77 (157)
T PF08235_consen 2 VISDIDGTITKSDVLGHVLPIIGKD----WTHPGVAELYRKIQDNGYQIIYLTARPIGQADRTREWLRQHKQDGYNLPDG 77 (157)
T ss_pred EEECCCCCCCCCCCCHHHHHCCCCC----CCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 6971668748564100023224763----331369999999997895799992677889999999999845078869997
Q ss_pred ---HHC---------CC------HHHHHHHHHHHHHHC-CCHHHEEEEECCCCCHHHHHHCCCEE
Q ss_conf ---211---------51------026899999998407-88448887736843348998579115
Q T0635 88 ---YYK---------GQ------VDKRSAYQHLKKTLG-LNDDEFAYIGDDLPDLPLIQQVGLGV 133 (191)
Q Consensus 88 ---i~~---------~~------~dK~~~l~~l~~~~g-i~~~ev~~iGD~~nD~~~l~~ag~~~ 133 (191)
..+ ++ .=|...|+.+...+. ....-.+.+|+..+|+..-+.+|++-
T Consensus 78 pv~~sP~~~~~al~revi~~~p~~fK~~~L~~i~~~f~~~~~pf~agfGNr~tDv~aY~~vGi~~ 142 (157)
T PF08235_consen 78 PVHLSPDSLFAALHREVISKKPEEFKIACLRDIKNLFPPDGNPFYAGFGNRITDVAAYRSVGIPP 142 (157)
T ss_pred CEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCH
T ss_conf 57977861256664234468879999999998887447788826888588375599999769995
No 9
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated .; GO: 0003993 acid phosphatase activity; PDB: 2i33_B 2i34_B 1z88_B 2aut_C 1z5u_B 1z5g_C 2hf7_B 1rmq_B 2g1a_A 1rmt_C ....
Probab=97.13 E-value=2e-05 Score=53.77 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=67.3
Q ss_pred HHCCEEEECCCCEEECCEEEE----------CCCC--C---EEEEEECCHH-HHHHHHHHCCCEEEEECCCCHH---HHH
Q ss_conf 519688860373535685688----------7898--5---7988632248-9999999729989997387178---999
Q T0635 17 KKIKCLICDVDGVLSDGLLHI----------DNHG--N---ELKSFHVQDG-MGLKLLMAAGIQVAIITTAQNA---VVD 77 (191)
Q Consensus 17 ~~Iklvv~DvDGvLTdg~i~~----------~~~G--e---e~k~~~~~D~-~aI~~Lk~~Gi~v~IISg~~~~---~v~ 77 (191)
.+-.++|||+|.|+.++.-|+ ++.. + .-+...+.-. .-++.+++.|++|.+|||+... .+.
T Consensus 70 ~~~~avV~DIDeT~Lsn~~y~~~~~~~~~~~~~~~w~~wv~~~~a~aip~a~~l~~~~~~~G~~V~~iT~R~e~~r~~T~ 149 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAKHGFGGEPYDPESWDEWVAAGKAPAIPGALELYNYAQARGVKVFFITGRPESQRNATV 149 (229)
T ss_dssp -SEEEEEEESBTTTEE-CCCHHHHHHHTTTT-TTSHHHHHHHT-GCEEE-HHHHHHHHHH---EEEEEEEEECCCSSHHH
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
T ss_conf 79977999786544278899998522777778577999985566758746999999999789989998189842689999
Q ss_pred HHHHHHCCHH---HHC-CCH---------HHHHHHHHHHHH-HCCCHHHEEEEECCCCCHHHHHHC
Q ss_conf 9998722011---211-510---------268999999984-078844888773684334899857
Q T0635 78 HRMEQLGITH---YYK-GQV---------DKRSAYQHLKKT-LGLNDDEFAYIGDDLPDLPLIQQV 129 (191)
Q Consensus 78 ~~~~~lgi~~---i~~-~~~---------dK~~~l~~l~~~-~gi~~~ev~~iGD~~nD~~~l~~a 129 (191)
.-+++.|+.. ++. +.. .|......+.++ +.| +++|||..+|+.-.+.+
T Consensus 150 ~nL~~~G~~~~~~l~lr~~~~~~~~~~~~~K~~rr~~i~~~Gy~I----v~~iGD~~~D~~g~~~~ 211 (229)
T PF03767_consen 150 ENLKKAGFPGWDKLILRGDDDASNKSAVEYKSERRKEIEKEGYRI----VANIGDQWSDFSGAKEA 211 (229)
T ss_dssp HHHHHHHTTTBTCCEEEECTTTS--------HCHHHHHHHT-ECE----CEEE---HHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE----EEEECCCHHHHHCCCCC
T ss_conf 999984999874332443687544320003599999999769808----99968997886074545
No 10
>PF11019 DUF2608: Protein of unknown function (DUF2608)
Probab=96.45 E-value=0.013 Score=35.06 Aligned_cols=122 Identities=17% Similarity=0.254 Sum_probs=78.7
Q ss_pred CHHHHHHHHH---HCCEEEECCCCEEECCEEEECCCCC------EE--------EEEE-------------------CCH
Q ss_conf 9899999985---1968886037353568568878985------79--------8863-------------------224
Q T0635 8 EMNELLEKAK---KIKCLICDVDGVLSDGLLHIDNHGN------EL--------KSFH-------------------VQD 51 (191)
Q Consensus 8 ~~~~l~e~~~---~Iklvv~DvDGvLTdg~i~~~~~Ge------e~--------k~~~-------------------~~D 51 (191)
++.++.+-++ .=-+|+||+|.||.-...++...+- .+ +++. -.|
T Consensus 6 s~~~V~~~~~~~~~~tLvv~DiDdtLi~~~~~~g~~~w~~~~~~kl~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~ 85 (252)
T PF11019_consen 6 SFHEVQDILENADQDTLVVFDIDDTLITPKEPLGSSIWYQWQLEKLQKLLPSIEKAVEKIYEEWLSLIFELRKMELIESD 85 (252)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEECCHH
T ss_conf 59999999971778749999843022046531367530999999987624454455777999999999875102552376
Q ss_pred H-HHHHHHHHCCCEEEEECCCCHHHHHHHH---HHHCCHH------------------------------HHCCCHHHHH
Q ss_conf 8-9999999729989997387178999999---8722011------------------------------2115102689
Q T0635 52 G-MGLKLLMAAGIQVAIITTAQNAVVDHRM---EQLGITH------------------------------YYKGQVDKRS 97 (191)
Q Consensus 52 ~-~aI~~Lk~~Gi~v~IISg~~~~~v~~~~---~~lgi~~------------------------------i~~~~~dK~~ 97 (191)
. --|+.|++.|+.+..+|.+.......++ ++++|.- ++.+..+|+.
T Consensus 86 ~p~~i~~l~~~~~~v~~lT~~~~~~~~~t~~~Lk~l~I~Fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~Kg~ 165 (252)
T PF11019_consen 86 IPNLINKLQNKGITVIGLTQRPPNMESWTLRELKRLGIDFSSSSFKEDGYIEDPNTDSSLSRAPSFYKGILFTGGIDKGE 165 (252)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEECEEEECCCCCCH
T ss_conf 99999999977993999808994268999999998796755465665662104444666677852451347755866427
Q ss_pred HHHHHHHHHCCCHHHEEEEECCCCCHHHHHHC
Q ss_conf 99999984078844888773684334899857
Q T0635 98 AYQHLKKTLGLNDDEFAYIGDDLPDLPLIQQV 129 (191)
Q Consensus 98 ~l~~l~~~~gi~~~ev~~iGD~~nD~~~l~~a 129 (191)
++..++...+..|+.++||.|+...+.-+..+
T Consensus 166 ~L~~~L~~~~~~pk~IIfiDd~~enl~sm~~~ 197 (252)
T PF11019_consen 166 VLKYFLDKINQSPKKIIFIDDNKENLESMGEA 197 (252)
T ss_pred HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 99999997187985699976988999999999
No 11
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.
Probab=96.05 E-value=0.0033 Score=38.98 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=37.9
Q ss_pred HHCCEEEECCCCEEECCEEEECCCCCEEEEEECCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHC
Q ss_conf 51968886037353568568878985798863224899999997299899973871789999998722
Q T0635 17 KKIKCLICDVDGVLSDGLLHIDNHGNELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRMEQLG 84 (191)
Q Consensus 17 ~~Iklvv~DvDGvLTdg~i~~~~~Gee~k~~~~~D~~aI~~Lk~~Gi~v~IISg~~~~~v~~~~~~lg 84 (191)
..++++.||=|+||-+..--+.++...+.+ |-.|...|+.|+|+|.--.+.+.+..++|.
T Consensus 145 ~~l~LvTFDgDvTLY~DG~~l~~dn~vi~r--------ii~LL~~g~~VgIVTAAGY~~a~kY~~RL~ 204 (409)
T PF06437_consen 145 YGLKLVTFDGDVTLYEDGASLEPDNPVIPR--------IIKLLRQGVKVGIVTAAGYPGAEKYEERLH 204 (409)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCHHHHH--------HHHHHHCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 784289986974111588878889738999--------999996799699996889996487999999
No 12
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; PDB: 3ef1_A 3ef0_A 2ght_B 1t9z_A 2ghq_B 1ta0_A 2hhl_A 2q5e_D.
Probab=94.67 E-value=0.0089 Score=36.09 Aligned_cols=111 Identities=20% Similarity=0.235 Sum_probs=67.8
Q ss_pred CEEEECCCCEEECCEEEECCC-CCEEEEEECCHHHH--HHHHHHCCCEEEEECCCCHHHHHHHHHHHCCH-HHHCC----
Q ss_conf 688860373535685688789-85798863224899--99999729989997387178999999872201-12115----
Q T0635 20 KCLICDVDGVLSDGLLHIDNH-GNELKSFHVQDGMG--LKLLMAAGIQVAIITTAQNAVVDHRMEQLGIT-HYYKG---- 91 (191)
Q Consensus 20 klvv~DvDGvLTdg~i~~~~~-Gee~k~~~~~D~~a--I~~Lk~~Gi~v~IISg~~~~~v~~~~~~lgi~-~i~~~---- 91 (191)
|++|+|.||||....- .+. +...-.+..|-+.- ++.+ ..++++.+.|.+...-++.+.+.+... ..+..
T Consensus 1 k~lVlDLD~TLv~~~~--~~~~~~~~~~v~~RP~~~eFL~~l-~~~~~v~i~T~~~~~ya~~vl~~l~~~~~~~~~~~~r 77 (148)
T PF03031_consen 1 KLLVLDLDGTLVHSES--DPKIQRTGYYVKLRPGLDEFLEEL-SKHYEVVIWTAASREYAEAVLDKLDPQRKYFSFILYR 77 (148)
T ss_dssp -EEEE--CTTTEEEES--STTE-EEEEEEEE-TTHHHHHHHH-CTTSEEEEE-SS-HHHHHHHHHHH------EEEEE-G
T ss_pred CEEEEECCCCEECCCC--CCCCCCCCEEEEECCCHHHHHHHH-HHCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 9899968998799602--444001324699894599999999-7199999997775123999999865445513103462
Q ss_pred --CH-HHHHHHHHHHHHHCCCHHHEEEEECCCCCHHHHHHCCCEEEC
Q ss_conf --10-268999999984078844888773684334899857911514
Q T0635 92 --QV-DKRSAYQHLKKTLGLNDDEFAYIGDDLPDLPLIQQVGLGVAV 135 (191)
Q Consensus 92 --~~-dK~~~l~~l~~~~gi~~~ev~~iGD~~nD~~~l~~ag~~~a~ 135 (191)
+. .+. .++. ++..|.+++++++|-|+..-...-..-++.+-+
T Consensus 78 ~~~~~~~~-~~K~-L~~l~~~~~~viiVDD~~~~~~~~~~N~i~i~~ 122 (148)
T PF03031_consen 78 DHCTFRKG-YIKD-LSKLGRDLDNVIIVDDSPDVWESNPSNGIKIPP 122 (148)
T ss_dssp GGSEEE---EE---GGGT-S-GGGEEEEES-GGGGTT-GGGEEE---
T ss_pred CCCCCCCH-HHHH-HHHHCCCCCEEEEEECCHHHHHCCCCCEEEEEC
T ss_conf 65344214-4232-676289975499998988886248767378307
No 13
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with one sequence from Arabidopsis thaliana. The sequences from mouse are annotated as pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the human homolog. However, no such annotation can currently be found for this gene. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; PDB: 2g08_A 2q4t_A 2g06_A 2g09_A 2bdu_B 2g07_A 2g0a_A 2cn1_A 2jga_A 2vkq_A.
Probab=94.52 E-value=0.008 Score=36.41 Aligned_cols=120 Identities=17% Similarity=0.270 Sum_probs=71.4
Q ss_pred EECCHHHH--HHHHHHCCCEEEEECCCCHHHHHHHHHHHCCH----HHHCC-------------------CHHHHHHHH-
Q ss_conf 63224899--99999729989997387178999999872201----12115-------------------102689999-
Q T0635 47 FHVQDGMG--LKLLMAAGIQVAIITTAQNAVVDHRMEQLGIT----HYYKG-------------------QVDKRSAYQ- 100 (191)
Q Consensus 47 ~~~~D~~a--I~~Lk~~Gi~v~IISg~~~~~v~~~~~~lgi~----~i~~~-------------------~~dK~~~l~- 100 (191)
..+|||.. ++.|++.+|++.|+|++-...++.+++..+.. +++++ ..+|-....
T Consensus 89 i~LRdG~~eff~~l~~~~IPv~IfSAGlgdiIe~vL~~~~~~~~n~~IvSN~m~Fd~dg~l~gf~~~~ih~~nKn~~~l~ 168 (246)
T PF05822_consen 89 IKLRDGFEEFFNFLQENNIPVLIFSAGLGDIIEEVLRQKGVFHPNVKIVSNFMDFDEDGILVGFKGPLIHTFNKNESVLD 168 (246)
T ss_dssp --B-B--CCCHHHCCTTT--EEEEE-----HHHHHHHH----BTTEEEES----B-----B---------TT-TT---GG
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEEECCCCCEEEECCCCCEEC
T ss_conf 45020789999999876998999948828999999985664678988995068988998277446874046268750113
Q ss_pred --HHHHHHCCCHHHEEEEECCCCCHHHHHHC-------CCEEECCCCCHHHH---HHCCHHCCCCCCCCHHHHHHHHHH
Q ss_conf --99984078844888773684334899857-------91151488748899---864400048988706988999999
Q T0635 101 --HLKKTLGLNDDEFAYIGDDLPDLPLIQQV-------GLGVAVSNAVPQVL---EFADWRTERTGGRGAVRELCDLIL 167 (191)
Q Consensus 101 --~l~~~~gi~~~ev~~iGD~~nD~~~l~~a-------g~~~a~~~A~~~ik---~~a~~v~~~~gg~Gavre~~e~iL 167 (191)
.+-+++. ...+++.+||+..|+.|..-+ -.++--.+....+. +.=|+|+....---.++.+..+||
T Consensus 169 ~~~~~~~~~-~R~niillGDs~gDl~Ma~g~~~~~~vl~IGFLndk~e~~l~~Y~~~yDIVl~~D~tm~v~~~ll~~I~ 246 (246)
T PF05822_consen 169 NSEYFEQLK-DRTNIILLGDSIGDLQMADGVPNSENVLKIGFLNDKVEENLESYMDAYDIVLVDDQTMDVPNALLQKIL 246 (246)
T ss_dssp GHHHHHCTT-T--EEEEE------TTTT------SEEEE---B-SSHHHHHHHHHCCSSSEEBT--B-HHHHHHHHHH-
T ss_pred CCHHHHHHC-CCCCEEEECCCHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHC
T ss_conf 726666636-787779966846667776387655737898760040899999998846989965888439999999759
No 14
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) . These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognized by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2bde_A 2jcm_A 2jc9_A 2j2c_A.
Probab=89.85 E-value=0.42 Score=24.96 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=60.3
Q ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCH---------HHH----CC----------------------------
Q ss_conf 9999999729989997387178999999872201---------121----15----------------------------
Q T0635 53 MGLKLLMAAGIQVAIITTAQNAVVDHRMEQLGIT---------HYY----KG---------------------------- 91 (191)
Q Consensus 53 ~aI~~Lk~~Gi~v~IISg~~~~~v~~~~~~lgi~---------~i~----~~---------------------------- 91 (191)
..++.||+.|.++.+||+....-+...+..+--. +++ -+
T Consensus 190 ~~L~~lr~~GKklFLlTNS~~~yt~~~M~yl~g~~~~~~~~Wr~lFDvVIv~A~KP~FF~~~~pfr~vd~~~g~l~~~~~ 269 (448)
T PF05761_consen 190 PWLHRLREAGKKLFLLTNSPYDYTNKGMSYLLGPFLPEGMDWRDLFDVVIVDARKPGFFTEGRPFREVDTETGKLRNGDH 269 (448)
T ss_dssp HHHHHHHC---EEEEE-SS-HHHHHHHHHHHCGCGS-----GGGGECEEESS--CCCCHHS----EEE-ST---EEE---
T ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 99999996397699995897489999878652898999989566403899648999764699854799789883357643
Q ss_pred --CHHH-----HHHHHHHHHHHCCCHHHEEEEECC-CCCHHHHHHC-CCE-EEC
Q ss_conf --1026-----899999998407884488877368-4334899857-911-514
Q T0635 92 --QVDK-----RSAYQHLKKTLGLNDDEFAYIGDD-LPDLPLIQQV-GLG-VAV 135 (191)
Q Consensus 92 --~~dK-----~~~l~~l~~~~gi~~~ev~~iGD~-~nD~~~l~~a-g~~-~a~ 135 (191)
...+ +-.+..+.+.+|....+|+||||. ..|+--.++. |+. +++
T Consensus 270 ~~~l~~g~vY~gGn~~~l~~llg~~g~~VLY~GDHIy~Di~~skk~~gWrT~lI 323 (448)
T PF05761_consen 270 VGPLEKGKVYSGGNWDHLHKLLGWRGSEVLYFGDHIYGDILRSKKHLGWRTALI 323 (448)
T ss_dssp ---------EE---HHHHHHH-------BEE--------HHHHHHHH-SEEEEE
T ss_pred CCCCCCCCEEECCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEE
T ss_conf 344678975207899999998678998579966741166775531257777987
No 15
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2b8e_A 2voy_J 3ed5_A 2w4m_A 2gfh_A 1x42_A 2om6_A 2no4_A 2no5_B 1zrn_A ....
Probab=89.16 E-value=0.035 Score=32.10 Aligned_cols=15 Identities=53% Similarity=0.935 Sum_probs=13.9
Q ss_pred CCEEEECCCCEEECC
Q ss_conf 968886037353568
Q T0635 19 IKCLICDVDGVLSDG 33 (191)
Q Consensus 19 Iklvv~DvDGvLTdg 33 (191)
||+++||+||||+++
T Consensus 1 ik~i~FD~DGTL~~~ 15 (192)
T PF00702_consen 1 IKAIIFDLDGTLTDS 15 (192)
T ss_dssp ESEEEEECBTTTBEC
T ss_pred CEEEEECCCCCCCCC
T ss_conf 969999797770139
No 16
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=86.29 E-value=0.46 Score=24.66 Aligned_cols=66 Identities=17% Similarity=0.343 Sum_probs=44.4
Q ss_pred HHHHHHHC------CCEEEEECCCCHHHHHHH---HHHHCCH---HHHCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCC
Q ss_conf 99999972------998999738717899999---9872201---12115102689999999840788448887736843
Q T0635 54 GLKLLMAA------GIQVAIITTAQNAVVDHR---MEQLGIT---HYYKGQVDKRSAYQHLKKTLGLNDDEFAYIGDDLP 121 (191)
Q Consensus 54 aI~~Lk~~------Gi~v~IISg~~~~~v~~~---~~~lgi~---~i~~~~~dK~~~l~~l~~~~gi~~~ev~~iGD~~n 121 (191)
++..|++. -|+++++|.++.+.-.+. ++.+|+. .+|.|..+|...|+.+.- -+++-|...
T Consensus 172 ~L~~lQ~~~~~~~~piRtalVTARsApaheRvi~TLr~Wgi~iDEafFLgG~~K~~~L~~~~p--------hiFFDDQ~~ 243 (264)
T PF06189_consen 172 ALSRLQQKFPRYNCPIRTALVTARSAPAHERVIKTLRSWGIRIDEAFFLGGLEKGPFLKAFRP--------HIFFDDQMG 243 (264)
T ss_pred HHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCC--------CEEECCHHH
T ss_conf 999999867756896369998727883068999999983983308887179845789997678--------864357077
Q ss_pred CHHHHH
Q ss_conf 348998
Q T0635 122 DLPLIQ 127 (191)
Q Consensus 122 D~~~l~ 127 (191)
-++-..
T Consensus 244 H~~~A~ 249 (264)
T PF06189_consen 244 HLESAA 249 (264)
T ss_pred HHHHHH
T ss_conf 888875
No 17
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=85.84 E-value=0.88 Score=22.79 Aligned_cols=91 Identities=20% Similarity=0.300 Sum_probs=61.8
Q ss_pred CEEEECCCCEEECCEEEECCCCCEEEEEECCHH---HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHHCC----C
Q ss_conf 688860373535685688789857988632248---999999972998999738717899999987220112115----1
Q T0635 20 KCLICDVDGVLSDGLLHIDNHGNELKSFHVQDG---MGLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKG----Q 92 (191)
Q Consensus 20 klvv~DvDGvLTdg~i~~~~~Gee~k~~~~~D~---~aI~~Lk~~Gi~v~IISg~~~~~v~~~~~~lgi~~i~~~----~ 92 (191)
-.+|||+|-|| ++.+++. .+||- ..+..|++.|--+.+=|-|++.=|+.-++++++..+|.. .
T Consensus 123 hVIVfDLD~TL------Itde~~v----~Ird~~v~~sL~eLk~~~~vLvLWSyG~~eHV~~Sl~~~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 123 HVIVFDLDSTL------ITDEEEV----RIRDPFVYDSLNELKKRGCVLVLWSYGNREHVRHSLKELKLPSYFDIIICGG 192 (297)
T ss_pred EEEEEECCCCC------CCCCCCC----CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 08999787765------5667762----0378068999999997499999956899799999998728704227998589
Q ss_pred ----------------------------------HHH-HHHHHHHHHHHCCCHHHEEEEECCC
Q ss_conf ----------------------------------026-8999999984078844888773684
Q T0635 93 ----------------------------------VDK-RSAYQHLKKTLGLNDDEFAYIGDDL 120 (191)
Q Consensus 93 ----------------------------------~dK-~~~l~~l~~~~gi~~~ev~~iGD~~ 120 (191)
.+| +..+.+.+.+.|+..=.++..=|+.
T Consensus 193 ~~~~~~~~~~~~d~~~~~~f~~~~F~ld~~~~~~LPKSPrVVl~yL~k~gvny~KsiTLVDDL 255 (297)
T PF05152_consen 193 SKAGEYNSRVIVDRQYKVVFVSKPFYLDVDNVNGLPKSPRVVLWYLRKKGVNYFKSITLVDDL 255 (297)
T ss_pred CCCCCCCCCCEECCCCCEEEECCCEEEECCCCCCCCCCCEEHHHHHHHCCCCEECCEEEECCC
T ss_conf 647767755012034644885565587277678999998203999987296434008986357
No 18
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation . This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light . The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain . Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore , . Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm . This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 1u3d_A 1u3c_A 1dnp_B 2e0i_D 1qnf_A 1tez_A 1owp_A 1own_A 1owm_A 1owl_A ....
Probab=73.89 E-value=1.8 Score=20.68 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=46.3
Q ss_pred HHHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHHCCCHH------HHHHHHHHHHHHCCCHHHEEEEECCCCC
Q ss_conf 999972998999738717899999987220112115102------6899999998407884488877368433
Q T0635 56 KLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQVD------KRSAYQHLKKTLGLNDDEFAYIGDDLPD 122 (191)
Q Consensus 56 ~~Lk~~Gi~v~IISg~~~~~v~~~~~~lgi~~i~~~~~d------K~~~l~~l~~~~gi~~~ev~~iGD~~nD 122 (191)
+.|++.|+...++.|+.......+++++++..++.+... ....+.+.+++.|+.. ..+-++..-+
T Consensus 60 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~~~i~~--~~~~~~~L~~ 130 (166)
T PF00875_consen 60 ESLAKLGIPLYVRRGDPEDVLPELAKEYGITAVYFNREYEPYERQRDQAVRKRLKKQGIKV--HQFDDHCLVP 130 (166)
T ss_dssp HHHHHTT--EEEEE-SHHHHHHHHHHHCTESEEEEE---SHHHHHHHHHHHHHHHH-TSEE--EEE--SSSS-
T ss_pred HHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEE--EEECCCEEEC
T ss_conf 9999779968999818899999999995999899955779899999999999988769779--9988818972
No 19
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2i55_A 2i54_A 3f9r_B 2fue_A 2fuc_A 2amy_A 2q4r_A.
Probab=58.44 E-value=1.5 Score=21.34 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=40.1
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCHHHEEEEEC----CCCCHHHHHHCC-CEEECCCCCHHHHH
Q ss_conf 12115102689999999840788448887736----843348998579-11514887488998
Q T0635 87 HYYKGQVDKRSAYQHLKKTLGLNDDEFAYIGD----DLPDLPLIQQVG-LGVAVSNAVPQVLE 144 (191)
Q Consensus 87 ~i~~~~~dK~~~l~~l~~~~gi~~~ev~~iGD----~~nD~~~l~~ag-~~~a~~~A~~~ik~ 144 (191)
++++..-||.-+|..+.+.. .+++.++|| +-||.|++...+ .+.+|.+-.+-++.
T Consensus 155 Dvfp~GwDKtycL~~l~~~~---~~~I~FfGDkt~pGGNDYei~~d~rtigh~V~~p~DT~~~ 214 (220)
T PF03332_consen 155 DVFPKGWDKTYCLRHLEDEG---FDEIHFFGDKTFPGGNDYEIYSDPRTIGHTVTSPEDTIRQ 214 (220)
T ss_dssp EEEE----GGGGGGGTTTTT----SEEEEE----------HHHHHSTTEB----SSHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHC---CCEEEEEEECCCCCCCCCHHHCCCCCCEEEECCHHHHHHH
T ss_conf 40437856899999998701---3658998624779997512000699556884888999999
No 20
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-Deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known .; PDB: 2i7d_B 2jao_A 2jar_A 1z4m_A 2jau_A 1q92_A 1z4i_A 1q91_A 1z4q_A 1z4k_A ....
Probab=41.90 E-value=2.9 Score=19.32 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=10.6
Q ss_pred EEECCCCEEECCE
Q ss_conf 8860373535685
Q T0635 22 LICDVDGVLSDGL 34 (191)
Q Consensus 22 vv~DvDGvLTdg~ 34 (191)
+.+|+||||+|-.
T Consensus 5 I~iDmDgVlaD~~ 17 (191)
T PF06941_consen 5 IAIDMDGVLADFY 17 (191)
T ss_dssp EEEETBTTTB-S-
T ss_pred EEEECCCCCCCHH
T ss_conf 9997888673669
No 21
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively . The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits . In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied . The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 amino acid biosynthetic process; PDB: 2cdq_A 2j0x_A 2j0w_A 3c1m_A 2hmf_A 3c1n_C 3c20_B 2ogx_A 2egx_C 1oha_A ....
Probab=38.77 E-value=1.5 Score=21.29 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=17.3
Q ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 9999972998999738717899999987
Q T0635 55 LKLLMAAGIQVAIITTAQNAVVDHRMEQ 82 (191)
Q Consensus 55 I~~Lk~~Gi~v~IISg~~~~~v~~~~~~ 82 (191)
|..++..|.++.|++|.-. .+....+.
T Consensus 25 i~~l~~~g~~vvvV~ggg~-~~~~~~~~ 51 (243)
T PF00696_consen 25 IANLQDEGIKVVVVHGGGS-FTDKLLEA 51 (243)
T ss_dssp HHHHHHTTSEEEEEE-STC-HHHHHHHH
T ss_pred HHHHHHCCCEEEEEECCCH-HHHHHHHH
T ss_conf 9999968995999918817-99999986
No 22
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2nn4_C.
Probab=31.35 E-value=5.8 Score=17.35 Aligned_cols=27 Identities=37% Similarity=0.635 Sum_probs=19.5
Q ss_pred HHHHHHHHHCCCHHHEEEEECCCCCHHHHHH
Q ss_conf 9999998407884488877368433489985
Q T0635 98 AYQHLKKTLGLNDDEFAYIGDDLPDLPLIQQ 128 (191)
Q Consensus 98 ~l~~l~~~~gi~~~ev~~iGD~~nD~~~l~~ 128 (191)
.+.++++++|+ .+|+||-..|+++++.
T Consensus 6 DVqQLLK~fG~----~IY~GdR~~dielM~~ 32 (62)
T PF06014_consen 6 DVQQLLKKFGI----IIYFGDRLWDIELMEI 32 (62)
T ss_dssp HHHHHHHT-------------HHHHHHHHHH
T ss_pred HHHHHHHHCCE----EEEECCHHHHHHHHHH
T ss_conf 99999998797----7772874889999999
No 23
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid . This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 1wzu_A 2qs0_A.
Probab=30.94 E-value=12 Score=15.16 Aligned_cols=52 Identities=10% Similarity=0.095 Sum_probs=33.8
Q ss_pred HHHEEEEECCCCCHHHHHHC--------------CCEEECCCCCHHHHHHCCHHCCCCCCCCHHHHHHHH
Q ss_conf 44888773684334899857--------------911514887488998644000489887069889999
Q T0635 110 DDEFAYIGDDLPDLPLIQQV--------------GLGVAVSNAVPQVLEFADWRTERTGGRGAVRELCDL 165 (191)
Q Consensus 110 ~~ev~~iGD~~nD~~~l~~a--------------g~~~a~~~A~~~ik~~a~~v~~~~gg~Gavre~~e~ 165 (191)
|++.+++=|-.-..+|..++ ...++--|..-++|+.+|+++++.+ +..++++
T Consensus 67 P~k~VllPd~~AgCsmAd~~~~~~~~~~k~~~p~~~vV~YVNssA~vKA~~di~cTSsN----A~kiv~~ 132 (296)
T PF02445_consen 67 PEKTVLLPDPDAGCSMADMATAEQLRKLKEEYPDAIVVTYVNSSAEVKAESDICCTSSN----AVKIVES 132 (296)
T ss_dssp TTSEEE-SS--------TT--HHHHHHHHHHSTTS-BEEESSS-HHHHTT-SEEE-TTT----HHHHHHC
T ss_pred CCCEEECCCCCCCCCCHHCCCHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCEEEECHH----HHHHHHH
T ss_conf 99879866988998502169999999999978898389996484898714994996860----9999983
No 24
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2nyt_C 3e1u_A 2kbo_A 2jyw_A.
Probab=25.54 E-value=16 Score=14.42 Aligned_cols=19 Identities=53% Similarity=0.648 Sum_probs=16.3
Q ss_pred HHHHHHHHCCCEEEEECCC
Q ss_conf 9999999729989997387
Q T0635 53 MGLKLLMAAGIQVAIITTA 71 (191)
Q Consensus 53 ~aI~~Lk~~Gi~v~IISg~ 71 (191)
-|++.|.++|++|.|++-.
T Consensus 6 ~gLr~L~~~G~~v~iM~~~ 24 (55)
T PF05240_consen 6 EGLRRLCQAGAQVAIMTYS 24 (55)
T ss_dssp HHHHHHHH---EEEE-SHH
T ss_pred HHHHHHHHCCCEEEECCHH
T ss_conf 9999999879947853808
No 25
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process; PDB: 2gcg_D 2h1s_D 2q50_A 2dbr_B 2dbz_B 2dbq_A 2d0i_C 2o4c_A 1dxy_A 1j4a_C ....
Probab=25.01 E-value=16 Score=14.35 Aligned_cols=80 Identities=19% Similarity=0.159 Sum_probs=40.3
Q ss_pred HHHHHHHH-----CCC-EEEEECCCCHHHHHHHHHHHC--CHHHHCCCHHH--HHHHHHHHHHHCCCHHHEEEEECCCCC
Q ss_conf 99999997-----299-899973871789999998722--01121151026--899999998407884488877368433
Q T0635 53 MGLKLLMA-----AGI-QVAIITTAQNAVVDHRMEQLG--ITHYYKGQVDK--RSAYQHLKKTLGLNDDEFAYIGDDLPD 122 (191)
Q Consensus 53 ~aI~~Lk~-----~Gi-~v~IISg~~~~~v~~~~~~lg--i~~i~~~~~dK--~~~l~~l~~~~gi~~~ev~~iGD~~nD 122 (191)
.+++.|++ .|+ .+.+.........+.+.+.+. ++.++...... ...+..+. -++.+=.+..+|-+.-|
T Consensus 15 ~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~eel~~~l~~~~d~ii~~~~~~i~~~~l~~~~--~~Lk~I~~~g~G~d~ID 92 (150)
T PF00389_consen 15 EALEYLEEFKEKLAGYAEVVVFDSPFEPSEEELIERLKDPADAIIVRSETPITEELLDALP--PNLKLIATCGAGYDNID 92 (150)
T ss_dssp HHHHHHHHHHHCSTTTSEEEEESSTSSSSHHHHHHHHTTBCSEEEESTSSTBSHHHHHHHH--TT--EEEES----TTB-
T ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHC--CCCEEEEECCCCCCCHH
T ss_conf 9999997020246870489994488899999999983689759998089997999998426--08207968888587030
Q ss_pred HHHHHHCCCEEE
Q ss_conf 489985791151
Q T0635 123 LPLIQQVGLGVA 134 (191)
Q Consensus 123 ~~~l~~ag~~~a 134 (191)
++.++.-|+.++
T Consensus 93 ~~~a~~~gI~V~ 104 (150)
T PF00389_consen 93 LDAAKERGIPVT 104 (150)
T ss_dssp HHHHHHTTSEEE
T ss_pred HHHHHHCCEEEE
T ss_conf 999986897999
No 26
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2qm3_A.
Probab=22.64 E-value=18 Score=14.05 Aligned_cols=12 Identities=8% Similarity=0.349 Sum_probs=5.0
Q ss_pred HHHHHHHHHHCC
Q ss_conf 899999987220
Q T0635 74 AVVDHRMEQLGI 85 (191)
Q Consensus 74 ~~v~~~~~~lgi 85 (191)
..+...++++|+
T Consensus 81 ~~I~~~a~~~gl 92 (243)
T PF01861_consen 81 DFINRVAKEEGL 92 (243)
T ss_dssp HHHHHHHHH---
T ss_pred HHHHHHHHHCCC
T ss_conf 999999998299
No 27
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family .; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process
Probab=21.31 E-value=19 Score=13.87 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=11.4
Q ss_pred HHHHHHCCCEEEEECCCCHHHHHH
Q ss_conf 999997299899973871789999
Q T0635 55 LKLLMAAGIQVAIITTAQNAVVDH 78 (191)
Q Consensus 55 I~~Lk~~Gi~v~IISg~~~~~v~~ 78 (191)
|..++++|+.+.++.++-+....+
T Consensus 111 l~~~~~~gip~~lvNaRls~~s~~ 134 (186)
T PF04413_consen 111 LRQAKKRGIPVVLVNARLSDRSFR 134 (186)
T ss_pred HHHHHHCCCCEEEEEEECCCHHHH
T ss_conf 999998799889998224814454
No 28
>PF03377 Avirulence: Xanthomonas avirulence protein, Avr/PthA; InterPro: IPR005042 The pathogenicity gene, pthA, of Xanthomonas axonopodis pv. citri (sometimes also known as Xanthomonas citri or Xanthomonas campestris pv. citri) is required to elicit symptoms of Asiatic citrus canker disease. Introduction of pthA into Xanthomonas strains that are mildly pathogenic or opportunistic on citrus confers the ability to induce cankers on citrus. Structurally, pthA is highly similar to avrBs3 and avrBsP from Xanthomonas campestris pv. vesicatoria and to avrB4, avrb6, avrb7, avrBIn, avrB101, and avrB102 from Xanthomonas campestris pv. malvacearum .
Probab=20.86 E-value=20 Score=13.81 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=21.0
Q ss_pred HHCCCHHHEEEEECCCCCHHHHHH--CCCEEECCCCCHHHHHHCCHHCCCCCCCCHHHHHHHH
Q ss_conf 407884488877368433489985--7911514887488998644000489887069889999
Q T0635 105 TLGLNDDEFAYIGDDLPDLPLIQQ--VGLGVAVSNAVPQVLEFADWRTERTGGRGAVRELCDL 165 (191)
Q Consensus 105 ~~gi~~~ev~~iGD~~nD~~~l~~--ag~~~a~~~A~~~ik~~a~~v~~~~gg~Gavre~~e~ 165 (191)
.+.+++++++++--...--++++. .-+++.+. +++...+..-.+..++||++|+ |.++.
T Consensus 269 ~h~L~~~qvva~A~~~ggkqalE~v~rllpvl~~-~h~L~~~q~vaia~h~gg~~al-e~v~r 329 (385)
T PF03377_consen 269 PHALSPEQVVAIASNNGGKQALETVQRLLPVLPK-NHTLSPEQVVAIASHNGGKQAL-EAVQR 329 (385)
T ss_pred CCCCCHHHEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCHHHEEEEEECCCCCCHH-HHHHH
T ss_conf 4888856668882578974189999975676643-6899867869887068986089-99997
No 29
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=20.16 E-value=20 Score=13.72 Aligned_cols=78 Identities=21% Similarity=0.170 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHCCEEEECC--CCEEECCEE--EECCCCCEEEEEECCHHHHHHHHHHCCCEEEEECCCCHHH-----HHH
Q ss_conf 9899999985196888603--735356856--8878985798863224899999997299899973871789-----999
Q T0635 8 EMNELLEKAKKIKCLICDV--DGVLSDGLL--HIDNHGNELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAV-----VDH 78 (191)
Q Consensus 8 ~~~~l~e~~~~Iklvv~Dv--DGvLTdg~i--~~~~~Gee~k~~~~~D~~aI~~Lk~~Gi~v~IISg~~~~~-----v~~ 78 (191)
++-++.+ ...|..++||. .-|++-... .-+++.---..|-.+-...+...+++||++.+=+|..++. ++.
T Consensus 14 aa~~l~~-~g~~D~l~~d~LAE~tma~~~~~~~~~p~~GY~~~~~~~l~~~L~~~~~~gi~vv~NaGg~np~~~a~~v~e 92 (362)
T PF07287_consen 14 AALELAE-GGDLDYLVFDYLAERTMAILARARLKDPEKGYAPDFVRDLEPVLPACAEKGIKVVINAGGANPAAAAEIVRE 92 (362)
T ss_pred HHHHHHH-CCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 9999974-499988998508789999999987219988962689999999999999859949981888898999999999
Q ss_pred HHHHHCCH
Q ss_conf 99872201
Q T0635 79 RMEQLGIT 86 (191)
Q Consensus 79 ~~~~lgi~ 86 (191)
+++++|+.
T Consensus 93 la~~~Gl~ 100 (362)
T PF07287_consen 93 LAAELGLS 100 (362)
T ss_pred HHHHCCCC
T ss_conf 99975997
Done!