Query T0637 NP_249547.1, PSEUDOMONAS AERUGINOSA, 146 residues
Match_columns 146
No_of_seqs 110 out of 175
Neff 7.2
Searched_HMMs 22458
Date Thu Jul 22 15:01:15 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0637.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0637.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c53_A Cytochrome C553; electr 69.0 2.2 9.9E-05 21.2 2.4 25 69-93 54-78 (79)
2 1cno_A Cytochrome C552; electr 63.6 3.4 0.00015 19.9 2.4 24 70-93 58-81 (87)
3 1h1o_A Cytochrome C-552; elect 58.5 3.5 0.00015 19.9 1.8 23 71-93 63-85 (183)
4 2c1v_A DI-HAEM cytochrome C pe 55.7 8.4 0.00037 17.3 3.3 19 78-96 297-315 (338)
5 2zzs_A Cytochrome C554; C-type 55.1 4.3 0.00019 19.3 1.8 24 70-93 78-101 (103)
6 1iqc_A DI-heme peroxidase; pro 53.6 9.8 0.00044 16.8 3.7 19 78-96 266-284 (308)
7 2gsv_A Hypothetical protein YV 53.4 7.5 0.00033 17.6 2.8 40 60-99 3-42 (80)
8 1m70_A Cytochrome C4; electron 52.6 7.5 0.00033 17.6 2.7 21 73-93 168-188 (190)
9 1w2l_A Cytochrome oxidase subu 48.2 3.8 0.00017 19.6 0.6 22 72-93 76-97 (99)
10 1fcd_C Flavocytochrome C sulfi 45.3 9 0.0004 17.1 2.1 20 74-93 56-75 (174)
11 1zzh_A Cytochrome C peroxidase 43.4 14 0.00063 15.8 3.0 19 78-96 286-304 (328)
12 2npt_A Dual specificity mitoge 43.1 7.8 0.00035 17.5 1.5 17 80-96 72-88 (106)
13 2vhd_A Cytochrome C551 peroxid 41.5 9.8 0.00043 16.8 1.9 21 77-97 282-302 (323)
14 1nml_A DI-HAEM cytochrome C pe 40.3 11 0.00049 16.5 1.9 12 80-91 285-296 (326)
15 3cvg_A Putative metal binding 37.0 15 0.00065 15.7 2.2 23 81-103 248-271 (294)
16 2d0s_A Cytochrome C, cytochrom 36.7 14 0.00064 15.7 2.1 19 74-93 59-77 (79)
17 2zxy_A Cytochrome C552, cytoch 36.4 14 0.00061 15.8 2.0 18 76-93 68-85 (87)
18 3hq9_A Cytochrome C551 peroxid 36.2 13 0.00059 15.9 1.9 14 79-92 203-216 (345)
19 3lof_A Heat shock 70 kDa prote 34.0 20 0.00087 14.8 8.2 54 4-61 3-56 (113)
20 1q08_A Zn(II)-responsive regul 33.5 20 0.00088 14.8 7.3 25 74-98 12-36 (99)
21 1cch_A Cytochrome C551; electr 33.4 12 0.00054 16.2 1.3 16 78-93 65-80 (82)
22 3l4m_A Methylamine utilization 33.3 16 0.0007 15.5 1.9 20 79-98 334-353 (373)
23 1h32_B Cytochrome C, SOXX; ele 33.3 18 0.00079 15.1 2.1 17 77-93 119-135 (138)
24 1c6r_A Cytochrome C6; electron 32.8 9 0.0004 17.1 0.5 25 72-96 61-85 (89)
25 1f1f_A Cytochrome C6; heme, pr 31.8 10 0.00046 16.7 0.7 23 73-95 63-85 (89)
26 3c2c_A Cytochrome C2; electron 30.9 21 0.00092 14.7 2.1 16 78-93 95-110 (112)
27 3muq_A Uncharacterized conserv 30.9 22 0.00098 14.5 3.3 23 80-102 212-234 (237)
28 1ayg_A Cytochrome C-552; elect 30.6 13 0.00058 16.0 1.1 19 75-93 60-78 (80)
29 2exv_A Cytochrome C-551; alpha 29.1 21 0.00092 14.7 1.9 16 78-93 65-80 (82)
30 3dmi_A Cytochrome C6; electron 28.7 9.6 0.00043 16.9 0.1 24 72-95 60-83 (88)
31 1cxc_A Cytochrome C2; electron 28.6 16 0.00072 15.4 1.3 16 78-93 104-119 (124)
32 3lr1_A Tungstate ABC transport 27.7 25 0.0011 14.1 3.4 22 81-102 214-235 (236)
33 2k7c_A CABP1, calbrain, calciu 26.9 25 0.0011 14.2 1.9 33 61-93 23-55 (72)
34 1twy_A ABC transporter, peripl 26.5 26 0.0012 14.0 3.0 23 81-103 249-271 (290)
35 2fcw_A Alpha-2-macroglobulin r 26.3 26 0.0012 14.0 2.1 26 62-87 4-29 (109)
36 3kn3_A Putative periplasmic pr 25.4 27 0.0012 13.9 2.9 23 80-102 217-239 (242)
37 2c1d_B SOXX; sulfur oxidation, 24.4 28 0.0013 13.8 1.8 17 77-93 118-134 (137)
38 1cc5_A Cytochrome C5; electron 24.1 26 0.0012 14.0 1.7 18 76-93 65-82 (83)
39 3gzg_A Molybdate-binding perip 24.1 29 0.0013 13.7 2.3 22 82-103 227-248 (253)
40 1cyi_A Cytochrome C6, cytochro 23.8 15 0.00067 15.6 0.4 24 72-95 60-83 (90)
41 2ce0_A Cytochrome C6; chloropl 23.7 28 0.0012 13.8 1.7 25 73-97 73-97 (105)
42 2v08_A Cytochrome C6; photosyn 23.3 18 0.0008 15.1 0.7 22 72-93 59-80 (86)
43 1a56_A C-551, ferricytochrome 23.1 19 0.00086 14.9 0.8 18 75-93 62-79 (81)
44 1gdv_A Cytochrome C6; RED ALGA 22.8 19 0.00084 14.9 0.7 24 72-95 58-81 (85)
45 1i54_A Cytochrome C; zinc-porp 22.2 25 0.0011 14.1 1.3 19 76-94 83-101 (103)
46 1hh1_A Holliday junction resol 21.9 24 0.0011 14.2 1.1 16 76-91 65-80 (143)
47 1w5c_T Cytochrome C-550; photo 21.6 29 0.0013 13.6 1.5 21 73-94 128-148 (163)
48 1gef_A Holliday junction resol 21.5 25 0.0011 14.1 1.1 16 76-91 54-69 (123)
49 2p32_A Heat shock 70 kDa prote 20.8 33 0.0015 13.3 7.7 66 14-79 18-92 (120)
50 3cp5_A Cytochrome C; electron 20.6 29 0.0013 13.7 1.3 16 78-93 104-119 (124)
51 1e29_A Cytochrome C549; electr 20.1 27 0.0012 13.9 1.1 19 76-94 104-122 (135)
No 1
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=68.98 E-value=2.2 Score=21.16 Aligned_cols=25 Identities=8% Similarity=0.367 Sum_probs=21.2
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 9999999986178899999998548
Q T0637 69 PELIKLYTTNFTESELKDLNAFYQS 93 (146)
Q Consensus 69 ~~~~~iY~~~fT~eEl~~liaFY~S 93 (146)
....+.|...+|++||.++++|+.|
T Consensus 54 ~~~Mp~~~~~Lsd~ei~~laaYi~s 78 (79)
T 1c53_A 54 KAVMTNLVKRYSDEEMKAMADYMSK 78 (79)
T ss_pred HCCHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 1041998842999999999999975
No 2
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=63.58 E-value=3.4 Score=19.92 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=19.6
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 999999986178899999998548
Q T0637 70 ELIKLYTTNFTESELKDLNAFYQS 93 (146)
Q Consensus 70 ~~~~iY~~~fT~eEl~~liaFY~S 93 (146)
...+.+...+|++||.+|++|+.|
T Consensus 58 ~~M~~~~~~Lsd~ei~~laaYi~s 81 (87)
T 1cno_A 58 PVMQGQATALSDADIANLAAYYAS 81 (87)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHCCCCHHHHHHHHHHHHH
T ss_conf 143787725999999999999997
No 3
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=58.46 E-value=3.5 Score=19.85 Aligned_cols=23 Identities=4% Similarity=0.268 Sum_probs=15.7
Q ss_pred HHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 99999986178899999998548
Q T0637 71 LIKLYTTNFTESELKDLNAFYQS 93 (146)
Q Consensus 71 ~~~iY~~~fT~eEl~~liaFY~S 93 (146)
...-+.+.+|.+|+++++++|.+
T Consensus 63 ~M~~~~~~l~d~~i~~la~y~~~ 85 (183)
T 1h1o_A 63 YMWPVAQALDSAKITALADYFNA 85 (183)
T ss_dssp HTHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHCCCHHHHHHHHHHHHH
T ss_conf 31113301333777766655320
No 4
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=55.74 E-value=8.4 Score=17.28 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=10.1
Q ss_pred HCCHHHHHHHHHHHCCHHH
Q ss_conf 6178899999998548877
Q T0637 78 NFTESELKDLNAFYQSPLG 96 (146)
Q Consensus 78 ~fT~eEl~~liaFY~Sp~G 96 (146)
.+|.+|+++|++|.+|=.|
T Consensus 297 ~Ls~~E~~~LvaFL~tLt~ 315 (338)
T 2c1v_A 297 ELTDQQAEDITAFLGTLTG 315 (338)
T ss_dssp CCCHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHCCC
T ss_conf 9899999999999996689
No 5
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=55.12 E-value=4.3 Score=19.26 Aligned_cols=24 Identities=17% Similarity=0.520 Sum_probs=20.0
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 999999986178899999998548
Q T0637 70 ELIKLYTTNFTESELKDLNAFYQS 93 (146)
Q Consensus 70 ~~~~iY~~~fT~eEl~~liaFY~S 93 (146)
...+-|...+|.+|++++++|+.|
T Consensus 78 ~~Mp~~~~~Lsd~~i~~l~~Yi~s 101 (103)
T 2zzs_A 78 AVMQAQASLLSDDDIANLAAYYSS 101 (103)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 368898811999999999999987
No 6
>1iqc_A DI-heme peroxidase; proteobacteria, beta subdivision, ammonia-oxidizing bacteria, oxidoreductas; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=53.57 E-value=9.8 Score=16.82 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=11.3
Q ss_pred HCCHHHHHHHHHHHCCHHH
Q ss_conf 6178899999998548877
Q T0637 78 NFTESELKDLNAFYQSPLG 96 (146)
Q Consensus 78 ~fT~eEl~~liaFY~Sp~G 96 (146)
.+|.+|+.+|++|.+|=.|
T Consensus 266 ~Lt~~E~~~LvaFL~tLt~ 284 (308)
T 1iqc_A 266 EFNKDEVSKIVAFLKTLTG 284 (308)
T ss_dssp CCCHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHCCC
T ss_conf 9899999999999996589
No 7
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=53.43 E-value=7.5 Score=17.61 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHH
Q ss_conf 7406899999999999986178899999998548877999
Q T0637 60 RAIGWDKIKPELIKLYTTNFTESELKDLNAFYQSPLGKKV 99 (146)
Q Consensus 60 ~~~~~~~l~~~~~~iY~~~fT~eEl~~liaFY~Sp~Gkk~ 99 (146)
+.++.+.+++-+-.-...+=.++-|.+|.++|+|-+|-=+
T Consensus 3 eLFsv~~f~~N~k~~i~mn~~~dKIhAmNaYYrsVvstlv 42 (80)
T 2gsv_A 3 ELFSVPYFIENLKQHIEMNQSEDKIHAMNSYYRSVVSTLV 42 (80)
T ss_dssp CTTCHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 2451099999999999859008899999999999999999
No 8
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=52.63 E-value=7.5 Score=17.61 Aligned_cols=21 Identities=10% Similarity=0.376 Sum_probs=13.4
Q ss_pred HHHHHHCCHHHHHHHHHHHCC
Q ss_conf 999986178899999998548
Q T0637 73 KLYTTNFTESELKDLNAFYQS 93 (146)
Q Consensus 73 ~iY~~~fT~eEl~~liaFY~S 93 (146)
+.++..+|.+||.+|++|+.|
T Consensus 168 ~~~~~~Lsd~ei~~laaYl~s 188 (190)
T 1m70_A 168 RGVAAKLSNKDIEALSSYIQG 188 (190)
T ss_dssp HHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHCCHHHHHHHHHHHHH
T ss_conf 999875899999999999997
No 9
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=48.23 E-value=3.8 Score=19.55 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=18.7
Q ss_pred HHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 9999986178899999998548
Q T0637 72 IKLYTTNFTESELKDLNAFYQS 93 (146)
Q Consensus 72 ~~iY~~~fT~eEl~~liaFY~S 93 (146)
.+.|...+|++|+.+|++|-+|
T Consensus 76 Mp~~~~~lsd~ei~~lvaYlks 97 (99)
T 1w2l_A 76 MPASYASLSEREVAALIEFIKQ 97 (99)
T ss_dssp CCGGGGGCCHHHHHHHHHHHHT
T ss_pred CCHHCCCCCHHHHHHHHHHHHH
T ss_conf 2010258999999999999997
No 10
>1fcd_C Flavocytochrome C sulfide dehydrogenase (cytochrome subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: a.3.1.4 a.3.1.4
Probab=45.31 E-value=9 Score=17.09 Aligned_cols=20 Identities=0% Similarity=0.453 Sum_probs=14.2
Q ss_pred HHHHHCCHHHHHHHHHHHCC
Q ss_conf 99986178899999998548
Q T0637 74 LYTTNFTESELKDLNAFYQS 93 (146)
Q Consensus 74 iY~~~fT~eEl~~liaFY~S 93 (146)
.+.+.+|.+||++|++||.+
T Consensus 56 ~~~~~ls~~di~~la~Y~~~ 75 (174)
T 1fcd_C 56 RIAKGYSTADFEKMAGYFKQ 75 (174)
T ss_dssp HHHTTSCHHHHHHHHHHHHT
T ss_pred HHHHHCCHHHHHHHHHHHHH
T ss_conf 36553122799999999985
No 11
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=43.39 E-value=14 Score=15.79 Aligned_cols=19 Identities=16% Similarity=0.489 Sum_probs=11.5
Q ss_pred HCCHHHHHHHHHHHCCHHH
Q ss_conf 6178899999998548877
Q T0637 78 NFTESELKDLNAFYQSPLG 96 (146)
Q Consensus 78 ~fT~eEl~~liaFY~Sp~G 96 (146)
.+|.+|+.+|++|-+|=.|
T Consensus 286 ~Ls~~E~~dLvaFL~tLt~ 304 (328)
T 1zzh_A 286 TLDDTQVDQITAFLGTLTG 304 (328)
T ss_dssp CCCHHHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHHHCCC
T ss_conf 9899999999999996689
No 12
>2npt_A Dual specificity mitogen-activated protein kinase kinase 5; MAP2K5, MEK5, MKK5, PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain, MAP3K2; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=43.12 E-value=7.8 Score=17.52 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHCCHHH
Q ss_conf 78899999998548877
Q T0637 80 TESELKDLNAFYQSPLG 96 (146)
Q Consensus 80 T~eEl~~liaFY~Sp~G 96 (146)
|.|||++|+.||-++.-
T Consensus 72 SDEEl~AMisyy~~~~~ 88 (106)
T 2npt_A 72 SDEEMKAMLSYYYSTVM 88 (106)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 67999999999999999
No 13
>2vhd_A Cytochrome C551 peroxidase; iron, heme, periplasm, transport, metal-binding, oxidoreductase, electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=41.53 E-value=9.8 Score=16.85 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=12.5
Q ss_pred HHCCHHHHHHHHHHHCCHHHH
Q ss_conf 861788999999985488779
Q T0637 77 TNFTESELKDLNAFYQSPLGK 97 (146)
Q Consensus 77 ~~fT~eEl~~liaFY~Sp~Gk 97 (146)
..+|.+|+++|++|.+|=.|.
T Consensus 282 ~~Lt~~E~~~LvAFL~tLt~~ 302 (323)
T 2vhd_A 282 KQLAPDDVENIVAFLHSLSGK 302 (323)
T ss_dssp CCCCHHHHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCC
T ss_conf 899999999999999965899
No 14
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=40.28 E-value=11 Score=16.51 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=3.8
Q ss_pred CHHHHHHHHHHH
Q ss_conf 788999999985
Q T0637 80 TESELKDLNAFY 91 (146)
Q Consensus 80 T~eEl~~liaFY 91 (146)
|.+|+++|++|-
T Consensus 285 s~~E~~~LvAFL 296 (326)
T 1nml_A 285 NNDEVKSIVAFL 296 (326)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 999999999999
No 15
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural genomics, protein structure initiative; 1.97A {Coccidioides immitis RS}
Probab=37.04 E-value=15 Score=15.69 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHCCH-HHHHHHHHH
Q ss_conf 88999999985488-779999982
Q T0637 81 ESELKDLNAFYQSP-LGKKVLEKM 103 (146)
Q Consensus 81 ~eEl~~liaFY~Sp-~Gkk~~~k~ 103 (146)
.+..++.++|.-|| +||++++..
T Consensus 248 ~e~AkaFidfl~S~EaGQ~iia~~ 271 (294)
T 3cvg_A 248 AEMAKEFAKWLVSKEGGQKVIEGF 271 (294)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHTC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 599999999984909889999998
No 16
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=36.68 E-value=14 Score=15.73 Aligned_cols=19 Identities=5% Similarity=0.200 Sum_probs=15.5
Q ss_pred HHHHHCCHHHHHHHHHHHCC
Q ss_conf 99986178899999998548
Q T0637 74 LYTTNFTESELKDLNAFYQS 93 (146)
Q Consensus 74 iY~~~fT~eEl~~liaFY~S 93 (146)
.|. .+|.+|+++|++|..|
T Consensus 59 ~~~-~Lsd~ei~~i~~yi~s 77 (79)
T 2d0s_A 59 PHP-QVAEADIEKIVRWVLT 77 (79)
T ss_dssp CCT-TSCHHHHHHHHHHHTT
T ss_pred CCC-CCCHHHHHHHHHHHHH
T ss_conf 135-5999999999999987
No 17
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=36.41 E-value=14 Score=15.85 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=15.5
Q ss_pred HHHCCHHHHHHHHHHHCC
Q ss_conf 986178899999998548
Q T0637 76 TTNFTESELKDLNAFYQS 93 (146)
Q Consensus 76 ~~~fT~eEl~~liaFY~S 93 (146)
...+|.+|+++|++|..|
T Consensus 68 ~~~Lsd~ei~~la~yi~S 85 (87)
T 2zxy_A 68 LKGLSDAELKALADFILS 85 (87)
T ss_dssp GGGCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 346999999999999985
No 18
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=36.15 E-value=13 Score=15.94 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 17889999999854
Q T0637 79 FTESELKDLNAFYQ 92 (146)
Q Consensus 79 fT~eEl~~liaFY~ 92 (146)
+|.+|.+...-|+.
T Consensus 203 lt~~e~rG~~LF~~ 216 (345)
T 3hq9_A 203 LDGKQTAGLKLFLD 216 (345)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCC
T ss_conf 66888878998614
No 19
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.40A {Homo sapiens}
Probab=34.00 E-value=20 Score=14.83 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999987289999999999999999988633899127899999999999998874
Q T0637 4 SQAEQFLKLVHADKLTVPVYAQVQQMLAQRFAQAKAPESKKAVLERYQAKANAELDRA 61 (146)
Q Consensus 4 A~ak~ll~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (146)
|.++++ .+.+.+++.+.++...+..--....++...+..+....+....|+...
T Consensus 3 a~~Eri----eAkN~LEsyiy~~r~~l~d~~~~~kl~~edk~~i~~~l~e~~~Wl~~n 56 (113)
T 3lof_A 3 AAAERV----SAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDAN 56 (113)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 789999----999889999999999974342423489999999999999999998658
No 20
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=33.52 E-value=20 Score=14.78 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=18.7
Q ss_pred HHHHHCCHHHHHHHHHHHCCHHHHH
Q ss_conf 9998617889999999854887799
Q T0637 74 LYTTNFTESELKDLNAFYQSPLGKK 98 (146)
Q Consensus 74 iY~~~fT~eEl~~liaFY~Sp~Gkk 98 (146)
.=.--||.+|++.++.+|..|-+..
T Consensus 12 ar~lGfsL~EI~~LL~l~~~~~~~~ 36 (99)
T 1q08_A 12 ARQLGFSLESIRELLSIRIDPEHHT 36 (99)
T ss_dssp HHHTTCCHHHHHHHHHHHHCGGGCB
T ss_pred HHHCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 9987998999999997422888673
No 21
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=33.41 E-value=12 Score=16.23 Aligned_cols=16 Identities=38% Similarity=0.295 Sum_probs=14.0
Q ss_pred HCCHHHHHHHHHHHCC
Q ss_conf 6178899999998548
Q T0637 78 NFTESELKDLNAFYQS 93 (146)
Q Consensus 78 ~fT~eEl~~liaFY~S 93 (146)
.+|.+|+++|++|..|
T Consensus 65 ~lsd~ei~~laaYl~s 80 (82)
T 1cch_A 65 PVTEEEAKILAEWVLS 80 (82)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9799999999999997
No 22
>3l4m_A Methylamine utilization protein MAUG; MAUG, quinone cofactor, TTQ, His- Tyr heme; HET: 0AF HEC 1PE PG4; 2.02A {Paracoccus denitrificans} PDB: 3l4o_A*
Probab=33.34 E-value=16 Score=15.45 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHHCCHHHHH
Q ss_conf 17889999999854887799
Q T0637 79 FTESELKDLNAFYQSPLGKK 98 (146)
Q Consensus 79 fT~eEl~~liaFY~Sp~Gkk 98 (146)
+|.+|+.+|++|.+|=++..
T Consensus 334 Ls~~E~~~LvaFL~tLtd~~ 353 (373)
T 3l4m_A 334 LDDGRVDALVAFLETLTDRR 353 (373)
T ss_dssp CCHHHHHHHHHHHHTTSCGG
T ss_pred CCHHHHHHHHHHHHHCCCCC
T ss_conf 89999999999997247999
No 23
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=33.29 E-value=18 Score=15.10 Aligned_cols=17 Identities=18% Similarity=0.385 Sum_probs=14.6
Q ss_pred HHCCHHHHHHHHHHHCC
Q ss_conf 86178899999998548
Q T0637 77 TNFTESELKDLNAFYQS 93 (146)
Q Consensus 77 ~~fT~eEl~~liaFY~S 93 (146)
..+|++|+.+|++|-.|
T Consensus 119 ~~Lt~qei~dlvaYL~s 135 (138)
T 1h32_B 119 PLMTAGQIEDVVAYLMT 135 (138)
T ss_dssp CSSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 58999999999999987
No 24
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=32.84 E-value=9 Score=17.08 Aligned_cols=25 Identities=8% Similarity=0.299 Sum_probs=19.6
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCHHH
Q ss_conf 9999986178899999998548877
Q T0637 72 IKLYTTNFTESELKDLNAFYQSPLG 96 (146)
Q Consensus 72 ~~iY~~~fT~eEl~~liaFY~Sp~G 96 (146)
.+-|...||.+|+.++++|..|-.|
T Consensus 61 Mp~~~~~Ls~~ei~~v~aYI~~~~~ 85 (89)
T 1c6r_A 61 MPAWSGTLDDDEIAAVAAYVYDQAS 85 (89)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 8754579999999999999998755
No 25
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=31.76 E-value=10 Score=16.66 Aligned_cols=23 Identities=9% Similarity=0.242 Sum_probs=18.8
Q ss_pred HHHHHHCCHHHHHHHHHHHCCHH
Q ss_conf 99998617889999999854887
Q T0637 73 KLYTTNFTESELKDLNAFYQSPL 95 (146)
Q Consensus 73 ~iY~~~fT~eEl~~liaFY~Sp~ 95 (146)
+.|...+|.+||.++++|..|-.
T Consensus 63 p~~~~~Lsd~ei~~v~aYi~s~a 85 (89)
T 1f1f_A 63 PGFNGRLSPLQIEDVAAYVVDQA 85 (89)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 52247999999999999999997
No 26
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*
Probab=30.95 E-value=21 Score=14.67 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=14.2
Q ss_pred HCCHHHHHHHHHHHCC
Q ss_conf 6178899999998548
Q T0637 78 NFTESELKDLNAFYQS 93 (146)
Q Consensus 78 ~fT~eEl~~liaFY~S 93 (146)
..+++|+.+|++|.+|
T Consensus 95 ~l~~~di~divAYL~T 110 (112)
T 3c2c_A 95 LTKDDEIENVIAYLKT 110 (112)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 8999999999999986
No 27
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=30.89 E-value=22 Score=14.50 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 78899999998548877999998
Q T0637 80 TESELKDLNAFYQSPLGKKVLEK 102 (146)
Q Consensus 80 T~eEl~~liaFY~Sp~Gkk~~~k 102 (146)
..+.-++.+.|-.||.||+++++
T Consensus 212 ~~~~Ak~Fidfl~S~egQ~ii~~ 234 (237)
T 3muq_A 212 NYQGAKAFSDWLVNPRGQELING 234 (237)
T ss_dssp CHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 98999999999779999999997
No 28
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=30.64 E-value=13 Score=16.01 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=15.4
Q ss_pred HHHHCCHHHHHHHHHHHCC
Q ss_conf 9986178899999998548
Q T0637 75 YTTNFTESELKDLNAFYQS 93 (146)
Q Consensus 75 Y~~~fT~eEl~~liaFY~S 93 (146)
+...+|.+|+++|++|..|
T Consensus 60 ~~~~ls~eei~~l~~Yi~s 78 (80)
T 1ayg_A 60 PPQNVTDAEAKQLAQWILS 78 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 3344899999999999997
No 29
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=29.06 E-value=21 Score=14.68 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=14.0
Q ss_pred HCCHHHHHHHHHHHCC
Q ss_conf 6178899999998548
Q T0637 78 NFTESELKDLNAFYQS 93 (146)
Q Consensus 78 ~fT~eEl~~liaFY~S 93 (146)
.+|.+|+++|++|-.|
T Consensus 65 ~Lsd~ei~~la~yi~s 80 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLS 80 (82)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9799999999999997
No 30
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum}
Probab=28.70 E-value=9.6 Score=16.89 Aligned_cols=24 Identities=8% Similarity=0.350 Sum_probs=19.3
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCHH
Q ss_conf 999998617889999999854887
Q T0637 72 IKLYTTNFTESELKDLNAFYQSPL 95 (146)
Q Consensus 72 ~~iY~~~fT~eEl~~liaFY~Sp~ 95 (146)
.|-|...+|.+|+.+|++|..+-+
T Consensus 60 MP~~~~~Ls~~ei~~v~aYi~~~a 83 (88)
T 3dmi_A 60 MPAFGGRLSDEEIANVAAYVLASA 83 (88)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 987768899999999999999998
No 31
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*
Probab=28.61 E-value=16 Score=15.36 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=14.3
Q ss_pred HCCHHHHHHHHHHHCC
Q ss_conf 6178899999998548
Q T0637 78 NFTESELKDLNAFYQS 93 (146)
Q Consensus 78 ~fT~eEl~~liaFY~S 93 (146)
..|++|+.+|++|.+|
T Consensus 104 ~Ls~~di~dLiAYL~s 119 (124)
T 1cxc_A 104 LKKEADAHNIWAYLQQ 119 (124)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9899999999999987
No 32
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=27.66 E-value=25 Score=14.13 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 8899999998548877999998
Q T0637 81 ESELKDLNAFYQSPLGKKVLEK 102 (146)
Q Consensus 81 ~eEl~~liaFY~Sp~Gkk~~~k 102 (146)
.++-+..+.|.-||-||++++.
T Consensus 214 ~e~Ak~FidfllS~e~Q~iia~ 235 (236)
T 3lr1_A 214 YDLAMKLIDYVTGPEGLKIISD 235 (236)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHC
T ss_conf 7999999999769999999960
No 33
>2k7c_A CABP1, calbrain, calcium-binding protein 1; EF-hand, calmodulin, neuron, alternative splicing, cell membrane, cytoplasm, cytoskeleton, lipoprotein; NMR {Homo sapiens} PDB: 2k7d_A
Probab=26.88 E-value=25 Score=14.17 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=24.3
Q ss_pred HCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 406899999999999986178899999998548
Q T0637 61 AIGWDKIKPELIKLYTTNFTESELKDLNAFYQS 93 (146)
Q Consensus 61 ~~~~~~l~~~~~~iY~~~fT~eEl~~liaFY~S 93 (146)
.++..+|...+.......+|.+||+.++..+.+
T Consensus 23 ~I~~~El~~~l~~~~g~~~s~~e~~~~~~~~D~ 55 (72)
T 2k7c_A 23 EISTSELREAMRKLLGHQVGHRDIEEIIRDVDL 55 (72)
T ss_dssp EECHHHHHHHHHHTTCSSSCHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 696999999999863987778999999998489
No 34
>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} SCOP: c.94.1.1
Probab=26.53 E-value=26 Score=14.00 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 88999999985488779999982
Q T0637 81 ESELKDLNAFYQSPLGKKVLEKM 103 (146)
Q Consensus 81 ~eEl~~liaFY~Sp~Gkk~~~k~ 103 (146)
.+..++.++|.-||.||+++.+.
T Consensus 249 ~~~a~~Fi~fl~S~~gq~ii~~~ 271 (290)
T 1twy_A 249 DEQTKEFIAFLKSESAKKLIVEY 271 (290)
T ss_dssp CHHHHHHHHHHHSHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 99999999998699889999978
No 35
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=26.31 E-value=26 Score=13.98 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 06899999999999986178899999
Q T0637 62 IGWDKIKPELIKLYTTNFTESELKDL 87 (146)
Q Consensus 62 ~~~~~l~~~~~~iY~~~fT~eEl~~l 87 (146)
+.-+++.+.+.-+-...||++||..+
T Consensus 4 F~EPkVq~LW~~A~~sNFt~dEL~Sl 29 (109)
T 2fcw_A 4 FEEPRVIDLWDLAQSANLTDKELEAF 29 (109)
T ss_dssp CCSHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 53548999999999849998999999
No 36
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, structural genomics, PSI-2; HET: GTT CIT; 2.41A {Wolinella succinogenes}
Probab=25.38 E-value=27 Score=13.86 Aligned_cols=23 Identities=9% Similarity=-0.016 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 78899999998548877999998
Q T0637 80 TESELKDLNAFYQSPLGKKVLEK 102 (146)
Q Consensus 80 T~eEl~~liaFY~Sp~Gkk~~~k 102 (146)
..++-++.+.|.-||-||++++.
T Consensus 217 n~e~Ak~FidfllS~e~Q~iia~ 239 (242)
T 3kn3_A 217 DYKGAKQFIDWIVSEKMQAEIAN 239 (242)
T ss_dssp CHHHHHHHHHHHHSHHHHHHHHT
T ss_pred CHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 86999999999779999999997
No 37
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=24.35 E-value=28 Score=13.77 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=14.3
Q ss_pred HHCCHHHHHHHHHHHCC
Q ss_conf 86178899999998548
Q T0637 77 TNFTESELKDLNAFYQS 93 (146)
Q Consensus 77 ~~fT~eEl~~liaFY~S 93 (146)
..+|.+|+.+|++|-.|
T Consensus 118 ~~Lt~qei~dlvAYL~t 134 (137)
T 2c1d_B 118 PILNAQQIEDVVAFLVT 134 (137)
T ss_dssp CSSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 56999999999999997
No 38
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=24.14 E-value=26 Score=13.96 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=14.9
Q ss_pred HHHCCHHHHHHHHHHHCC
Q ss_conf 986178899999998548
Q T0637 76 TTNFTESELKDLNAFYQS 93 (146)
Q Consensus 76 ~~~fT~eEl~~liaFY~S 93 (146)
...+|.+||.++++|..|
T Consensus 65 ~~~Lsd~eI~avv~Y~~~ 82 (83)
T 1cc5_A 65 CADCSDDELKAAIGKMSG 82 (83)
T ss_dssp CSSCCHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 356999999999999852
No 39
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=24.12 E-value=29 Score=13.71 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=17.7
Q ss_pred HHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 8999999985488779999982
Q T0637 82 SELKDLNAFYQSPLGKKVLEKM 103 (146)
Q Consensus 82 eEl~~liaFY~Sp~Gkk~~~k~ 103 (146)
.+.++.+.|.-||.||+++.+-
T Consensus 227 ~~A~~Fi~fllS~e~Q~i~~~~ 248 (253)
T 3gzg_A 227 PATAAFVSWLGSKPAKAIFARR 248 (253)
T ss_dssp TTHHHHHHHTTSHHHHHHHHHT
T ss_pred HHHHHHHHHHCCHHHHHHHHHC
T ss_conf 9999999997899999999983
No 40
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=23.83 E-value=15 Score=15.59 Aligned_cols=24 Identities=8% Similarity=0.310 Sum_probs=18.5
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCHH
Q ss_conf 999998617889999999854887
Q T0637 72 IKLYTTNFTESELKDLNAFYQSPL 95 (146)
Q Consensus 72 ~~iY~~~fT~eEl~~liaFY~Sp~ 95 (146)
.+.|...+|.+|+.++++|..+-.
T Consensus 60 Mp~f~~~Ls~~ei~~v~aYi~~~a 83 (90)
T 1cyi_A 60 MPAWADRLSEEEIQAVAEYVFKQA 83 (90)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 998888989999999999999875
No 41
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=23.69 E-value=28 Score=13.79 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=18.8
Q ss_pred HHHHHHCCHHHHHHHHHHHCCHHHH
Q ss_conf 9999861788999999985488779
Q T0637 73 KLYTTNFTESELKDLNAFYQSPLGK 97 (146)
Q Consensus 73 ~iY~~~fT~eEl~~liaFY~Sp~Gk 97 (146)
+.+...+|.+||.++++|..+-.++
T Consensus 73 ~~~~~~Lsd~ei~~v~aYv~~~a~~ 97 (105)
T 2ce0_A 73 CTFGPRLQDEEIKLLAEFVKFQADQ 97 (105)
T ss_dssp BCSSCCBCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 5434669999999999999998865
No 42
>2v08_A Cytochrome C6; photosynthesis, cyano-bacteria, electron-transfer; HET: HEM; 2.0A {Phormidium laminosum} PDB: 1c6s_A*
Probab=23.29 E-value=18 Score=15.09 Aligned_cols=22 Identities=9% Similarity=0.356 Sum_probs=17.7
Q ss_pred HHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 9999986178899999998548
Q T0637 72 IKLYTTNFTESELKDLNAFYQS 93 (146)
Q Consensus 72 ~~iY~~~fT~eEl~~liaFY~S 93 (146)
.+-|...+|.+|+.++++|..+
T Consensus 59 Mp~~~~~Lsd~ei~~v~aYi~~ 80 (86)
T 2v08_A 59 MPAFKGRLTDDQIAAVAAYVLD 80 (86)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9877789999999999999999
No 43
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=23.11 E-value=19 Score=14.86 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=14.8
Q ss_pred HHHHCCHHHHHHHHHHHCC
Q ss_conf 9986178899999998548
Q T0637 75 YTTNFTESELKDLNAFYQS 93 (146)
Q Consensus 75 Y~~~fT~eEl~~liaFY~S 93 (146)
|. .+|.+|+++|++|..|
T Consensus 62 ~~-~Lsd~ei~~l~~yi~s 79 (81)
T 1a56_A 62 NV-NVSDADAKALADWILT 79 (81)
T ss_dssp CC-SSSSHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHH
T ss_conf 45-4999999999999987
No 44
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=22.76 E-value=19 Score=14.92 Aligned_cols=24 Identities=8% Similarity=0.289 Sum_probs=18.8
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCHH
Q ss_conf 999998617889999999854887
Q T0637 72 IKLYTTNFTESELKDLNAFYQSPL 95 (146)
Q Consensus 72 ~~iY~~~fT~eEl~~liaFY~Sp~ 95 (146)
.|-|...+|.+|+.++++|-.+-+
T Consensus 58 Mp~f~~~Lsd~ei~~v~~Yi~~~a 81 (85)
T 1gdv_A 58 MPAFGGRLVDEDIEDAANYVLSQS 81 (85)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 877667899999999999999998
No 45
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* 2pcb_B* ...
Probab=22.23 E-value=25 Score=14.08 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=15.0
Q ss_pred HHHCCHHHHHHHHHHHCCH
Q ss_conf 9861788999999985488
Q T0637 76 TTNFTESELKDLNAFYQSP 94 (146)
Q Consensus 76 ~~~fT~eEl~~liaFY~Sp 94 (146)
....|++|+.+|++|-+|-
T Consensus 83 ~~~ls~~di~diiAYLks~ 101 (103)
T 1i54_A 83 AGIKKKGERQDLVAYLKSA 101 (103)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 8999999999999999985
No 46
>1hh1_A Holliday junction resolving enzyme HJC; holliday junction resolvase, homologous recombination, nuclease domain, archaea; 2.15A {Sulfolobus solfataricus} SCOP: c.52.1.18
Probab=21.92 E-value=24 Score=14.25 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=13.3
Q ss_pred HHHCCHHHHHHHHHHH
Q ss_conf 9861788999999985
Q T0637 76 TTNFTESELKDLNAFY 91 (146)
Q Consensus 76 ~~~fT~eEl~~liaFY 91 (146)
++||+.+|+++|+.|=
T Consensus 65 kkY~~~eeIe~L~tFa 80 (143)
T 1hh1_A 65 KIYVRREQAEGIIEFA 80 (143)
T ss_dssp CEEECHHHHHHHHHHH
T ss_pred CEEEEHHHHHHHHHHH
T ss_conf 3652088889999999
No 47
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=21.62 E-value=29 Score=13.65 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=16.1
Q ss_pred HHHHHHCCHHHHHHHHHHHCCH
Q ss_conf 9999861788999999985488
Q T0637 73 KLYTTNFTESELKDLNAFYQSP 94 (146)
Q Consensus 73 ~iY~~~fT~eEl~~liaFY~Sp 94 (146)
+.|. .+|++||.+|++|..+.
T Consensus 128 P~f~-~Lsdedi~al~aYl~~~ 148 (163)
T 1w5c_T 128 PKMR-NLTEKDLVAIAGHILVE 148 (163)
T ss_dssp GGGT-TCCHHHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHHC
T ss_conf 9868-99999999999999866
No 48
>1gef_A Holliday junction resolvase; HJC, hydrolase; 2.00A {Pyrococcus furiosus} SCOP: c.52.1.18 PDB: 1ipi_A
Probab=21.45 E-value=25 Score=14.15 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=13.5
Q ss_pred HHHCCHHHHHHHHHHH
Q ss_conf 9861788999999985
Q T0637 76 TTNFTESELKDLNAFY 91 (146)
Q Consensus 76 ~~~fT~eEl~~liaFY 91 (146)
++||+.+|+++++.|-
T Consensus 54 ~kY~~~~eI~~L~~Fs 69 (123)
T 1gef_A 54 HLYVGKRDMGRLIEFS 69 (123)
T ss_dssp CEEECHHHHHHHHHHH
T ss_pred CEEECHHHHHHHHHHH
T ss_conf 5662588889999999
No 49
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=20.80 E-value=33 Score=13.28 Aligned_cols=66 Identities=9% Similarity=-0.020 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC--C-------HHHHHHHHHHHHHHHC
Q ss_conf 2899999999999999999886338991278999999999999988740--6-------8999999999999861
Q T0637 14 HADKLTVPVYAQVQQMLAQRFAQAKAPESKKAVLERYQAKANAELDRAI--G-------WDKIKPELIKLYTTNF 79 (146)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~l~~~~~~iY~~~f 79 (146)
|+.+-+++.+.++...+..-.....++++.+..+....+....|+...- + ..+|...+-||+.+.|
T Consensus 18 ~~r~gLEsyiy~~k~~l~de~~~~KlseedK~~i~~~l~e~~~WLd~n~~a~keey~~K~keLe~i~~PI~~Kly 92 (120)
T 2p32_A 18 GSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLY 92 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 578779999999999860242225699999999999999999998568652389999999999999819999985
No 50
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=20.60 E-value=29 Score=13.72 Aligned_cols=16 Identities=6% Similarity=0.345 Sum_probs=13.9
Q ss_pred HCCHHHHHHHHHHHCC
Q ss_conf 6178899999998548
Q T0637 78 NFTESELKDLNAFYQS 93 (146)
Q Consensus 78 ~fT~eEl~~liaFY~S 93 (146)
.+|.+|+.+|++|.+|
T Consensus 104 ~Lsd~ei~~i~~Yi~s 119 (124)
T 3cp5_A 104 ALSEEQARAILEYLRQ 119 (124)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9799999999999997
No 51
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=20.14 E-value=27 Score=13.88 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=15.8
Q ss_pred HHHCCHHHHHHHHHHHCCH
Q ss_conf 9861788999999985488
Q T0637 76 TTNFTESELKDLNAFYQSP 94 (146)
Q Consensus 76 ~~~fT~eEl~~liaFY~Sp 94 (146)
...+|.+||.+|++|..+-
T Consensus 104 ~~~Lsd~di~~v~aYl~~~ 122 (135)
T 1e29_A 104 MRNYTEDDIFDVAGYTLIA 122 (135)
T ss_dssp GTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHC
T ss_conf 5789999999999999976
Done!