Query T0637 NP_249547.1, PSEUDOMONAS AERUGINOSA, 146 residues
Match_columns 146
No_of_seqs 110 out of 175
Neff 7.2
Searched_HMMs 11830
Date Thu Jul 22 15:03:49 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0637.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0637.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09832 DUF2059: Uncharacteri 99.8 5.7E-20 4.8E-24 150.4 10.0 92 33-125 3-94 (94)
2 PF05596 Taeniidae_ag: Taeniid 74.1 2.2 0.00018 19.4 5.1 44 82-135 37-80 (84)
3 PF07553 Lipoprotein_Ltp: Host 39.2 7.8 0.00066 15.6 2.5 29 61-89 18-46 (48)
4 PF09892 DUF2119: Uncharacteri 32.5 6.9 0.00059 16.0 1.3 12 90-101 59-70 (193)
5 PF11237 DUF3038: Protein of u 29.7 12 0.001 14.4 8.1 59 35-98 98-163 (171)
6 PF07852 DUF1642: Protein of u 25.2 4.8 0.0004 17.1 -0.5 15 77-91 116-130 (138)
7 PF10548 P22_AR_C: P22AR C-ter 22.4 11 0.00096 14.5 0.9 44 75-124 4-47 (74)
8 PF12322 T4_baseplate: T4 bact 22.3 16 0.0014 13.5 1.8 36 60-95 143-178 (205)
9 PF05766 NinG: Bacteriophage L 22.1 17 0.0014 13.5 2.2 28 66-93 152-179 (189)
10 PF09628 YvfG: YvfG protein; P 21.7 14 0.0012 13.9 1.3 20 81-100 23-42 (68)
11 PF11919 DUF3437: Domain of un 20.6 18 0.0015 13.2 1.7 25 69-94 62-86 (90)
No 1
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059)
Probab=99.81 E-value=5.7e-20 Score=150.44 Aligned_cols=92 Identities=39% Similarity=0.669 Sum_probs=85.3
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 88633899127899999999999998874068999999999999861788999999985488779999982899999999
Q T0637 33 RFAQAKAPESKKAVLERYQAKANAELDRAIGWDKIKPELIKLYTTNFTESELKDLNAFYQSPLGKKVLEKMPRLTAESAQ 112 (146)
Q Consensus 33 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iY~~~fT~eEl~~liaFY~Sp~Gkk~~~k~P~i~~e~~~ 112 (146)
++.+ +.++..+...+.+.+.+...+.+.++|+++.+.++++|++|||++||+++++||+||+|||+++++|.++++++.
T Consensus 3 ~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~fT~~EL~~l~aFY~Sp~Gkk~~~~~p~l~~e~~~ 81 (94)
T PF09832_consen 3 MLAQ-QAPDMQRQISEKYWEEFMALMKKELSWEELKDQMAPIYAKHFTEEELKALIAFYKSPAGKKFLAKMPQLMQESMQ 81 (94)
T ss_pred HHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 7875-387543755899999999999887638999999999999887999999999998698879999877899999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999989899999
Q T0637 113 LTQAKLQGAVEPV 125 (146)
Q Consensus 113 ~~~~~~~~~~~~~ 125 (146)
++++|+++++|++
T Consensus 82 ~~q~~~~~~~p~v 94 (94)
T PF09832_consen 82 VGQQWMQKVMPQV 94 (94)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999765779
No 2
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=74.09 E-value=2.2 Score=19.37 Aligned_cols=44 Identities=25% Similarity=0.532 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999998548877999998289999999999999898999999999999985
Q T0637 82 SELKDLNAFYQSPLGKKVLEKMPRLTAESAQLTQAKLQGAVEPVNKLMADMDKE 135 (146)
Q Consensus 82 eEl~~liaFY~Sp~Gkk~~~k~P~i~~e~~~~~~~~~~~~~~~~~~~~~e~~~e 135 (146)
+|++. =||+-|.||++.+ +..+...+.+.+-. ++...+.+..+.
T Consensus 37 ~~v~~--FF~~DPlGkkIa~----l~kdw~~~~~~~r~----KiRa~L~ey~r~ 80 (84)
T PF05596_consen 37 EEVRN--FFYEDPLGKKIAQ----LAKDWNEIAQEARK----KIRASLAEYCRG 80 (84)
T ss_pred HHHHH--HHCCCCHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_conf 99999--8336961789999----99999999999999----999999999876
No 3
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=39.22 E-value=7.8 Score=15.65 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=24.7
Q ss_pred HCCHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 40689999999999998617889999999
Q T0637 61 AIGWDKIKPELIKLYTTNFTESELKDLNA 89 (146)
Q Consensus 61 ~~~~~~l~~~~~~iY~~~fT~eEl~~lia 89 (146)
.+|.+.|.+++..-|...||.+|.+--|.
T Consensus 18 ~mSk~~i~dQLtse~Ge~Ft~e~AqYAid 46 (48)
T PF07553_consen 18 HMSKQGIYDQLTSEYGEKFTPEEAQYAID 46 (48)
T ss_pred CCCHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 66899999997531236899999999987
No 4
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119)
Probab=32.49 E-value=6.9 Score=15.98 Aligned_cols=12 Identities=50% Similarity=1.162 Sum_probs=5.0
Q ss_pred HHCCHHHHHHHH
Q ss_conf 854887799999
Q T0637 90 FYQSPLGKKVLE 101 (146)
Q Consensus 90 FY~Sp~Gkk~~~ 101 (146)
||+|+.|+++++
T Consensus 59 yy~s~~Gk~il~ 70 (193)
T PF09892_consen 59 YYESEMGKKILD 70 (193)
T ss_pred HCCCHHHHHHHH
T ss_conf 435445589999
No 5
>PF11237 DUF3038: Protein of unknown function (DUF3038)
Probab=29.67 E-value=12 Score=14.36 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=38.6
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHH-------HHHHHHCCHHHHH
Q ss_conf 633899127899999999999998874068999999999999861788999-------9999854887799
Q T0637 35 AQAKAPESKKAVLERYQAKANAELDRAIGWDKIKPELIKLYTTNFTESELK-------DLNAFYQSPLGKK 98 (146)
Q Consensus 35 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iY~~~fT~eEl~-------~liaFY~Sp~Gkk 98 (146)
.+.+++......|..|.+++...+.+.++.... -+..|-. +.+++. .-..||.+|.|-.
T Consensus 98 ~s~~~~~~~~~ll~~yl~rF~~~~~eRmn~~r~---~v~~~L~--~~~~l~~la~kLL~~LlF~sg~~G~~ 163 (171)
T PF11237_consen 98 SSQEPPPHQSQLLSDYLDRFRSLYQERMNPRRS---AVKRLLN--SPEQLNELALKLLIDLLFCSGPGGMQ 163 (171)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH---HHHHCCC--CHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 735997222799999999999999987577532---1454158--82444899999999998462885489
No 6
>PF07852 DUF1642: Protein of unknown function (DUF1642); InterPro: IPR012865 The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.
Probab=25.23 E-value=4.8 Score=17.07 Aligned_cols=15 Identities=53% Similarity=1.032 Sum_probs=12.8
Q ss_pred HHCCHHHHHHHHHHH
Q ss_conf 861788999999985
Q T0637 77 TNFTESELKDLNAFY 91 (146)
Q Consensus 77 ~~fT~eEl~~liaFY 91 (146)
..||+.||+.|-.||
T Consensus 116 ~~~Te~EIk~i~~~~ 130 (138)
T PF07852_consen 116 TKFTEQEIKKIDEFY 130 (138)
T ss_pred HHHHHHHHHCCCCCC
T ss_conf 664499984257876
No 7
>PF10548 P22_AR_C: P22AR C-terminal domain
Probab=22.37 E-value=11 Score=14.55 Aligned_cols=44 Identities=30% Similarity=0.270 Sum_probs=20.7
Q ss_pred HHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99861788999999985488779999982899999999999998989999
Q T0637 75 YTTNFTESELKDLNAFYQSPLGKKVLEKMPRLTAESAQLTQAKLQGAVEP 124 (146)
Q Consensus 75 Y~~~fT~eEl~~liaFY~Sp~Gkk~~~k~P~i~~e~~~~~~~~~~~~~~~ 124 (146)
|...||++||..+.=-+- ....+-.+.++.-+.+...+.+..|+
T Consensus 4 ~t~~fT~~El~~L~Wlw~------a~~~m~~~~~~l~p~L~~l~S~~a~~ 47 (74)
T PF10548_consen 4 YTFQFTEEELQSLAWLWF------AAERMRELLGELYPPLKALGSPFAPR 47 (74)
T ss_pred CCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 343478999999999999------99999999999989999877974501
No 8
>PF12322 T4_baseplate: T4 bacteriophage base plate protein
Probab=22.33 E-value=16 Score=13.48 Aligned_cols=36 Identities=14% Similarity=0.343 Sum_probs=27.4
Q ss_pred HHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHH
Q ss_conf 740689999999999998617889999999854887
Q T0637 60 RAIGWDKIKPELIKLYTTNFTESELKDLNAFYQSPL 95 (146)
Q Consensus 60 ~~~~~~~l~~~~~~iY~~~fT~eEl~~liaFY~Sp~ 95 (146)
+...|+++.+.--...-+..|.+++..+..|..||.
T Consensus 143 ~~y~w~dl~e~E~~~l~d~i~~~~~e~I~~~l~~P~ 178 (205)
T PF12322_consen 143 EVYNWEDLSEQEKDDLIDSITIDDFEKIVKFLNSPK 178 (205)
T ss_pred EEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCC
T ss_conf 899866599889999998628999999999756864
No 9
>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalysed by the Escherichia coli RecBCD pathway .
Probab=22.11 E-value=17 Score=13.45 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 9999999999986178899999998548
Q T0637 66 KIKPELIKLYTTNFTESELKDLNAFYQS 93 (146)
Q Consensus 66 ~l~~~~~~iY~~~fT~eEl~~liaFY~S 93 (146)
.+.-.-.+-=...||.+||++|++.|.-
T Consensus 152 ~Ve~Le~~~~~~k~~~~el~~i~~~y~~ 179 (189)
T PF05766_consen 152 RVEWLEGPHEPRKWTIEELKAIKAHYRA 179 (189)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999967898788999999999999999
No 10
>PF09628 YvfG: YvfG protein; PDB: 2js1_B 2gsv_A.
Probab=21.72 E-value=14 Score=13.88 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHCCHHHHHHH
Q ss_conf 88999999985488779999
Q T0637 81 ESELKDLNAFYQSPLGKKVL 100 (146)
Q Consensus 81 ~eEl~~liaFY~Sp~Gkk~~ 100 (146)
+.-++++.++|+|-+|-=+-
T Consensus 23 ~~KI~AmNaYYr~V~~tl~~ 42 (68)
T PF09628_consen 23 EDKIHAMNAYYRSVVSTLVQ 42 (68)
T ss_dssp S-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999
No 11
>PF11919 DUF3437: Domain of unknown function (DUF3437)
Probab=20.56 E-value=18 Score=13.24 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=18.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCH
Q ss_conf 99999999861788999999985488
Q T0637 69 PELIKLYTTNFTESELKDLNAFYQSP 94 (146)
Q Consensus 69 ~~~~~iY~~~fT~eEl~~liaFY~Sp 94 (146)
+.+ ..++..||+++|..|-..-.+|
T Consensus 62 D~W-~~~~~~Ft~~ql~~l~~~~~~p 86 (90)
T PF11919_consen 62 DTW-HEDKKKFTEDQLEDLEGVLLWP 86 (90)
T ss_pred CCH-HHHHHHCCHHHHHHHHCCCCCC
T ss_conf 418-8878864999999875667576
Done!