Query T0638 3NXH, Bacillus subtilis, 269 residues
Match_columns 269
No_of_seqs 113 out of 1367
Neff 7.4
Searched_HMMs 22458
Date Thu Jul 22 15:05:06 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0638.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0638.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mej_A Transcriptional regulat 100.0 0 0 452.7 20.9 254 2-264 26-283 (286)
2 3bpj_A Eukaryotic translation 27.7 25 0.0011 14.1 5.0 52 165-216 17-68 (80)
3 1hdh_A Arylsulfatase; hydrolas 18.1 39 0.0017 12.9 1.8 15 1-16 1-15 (536)
4 1vmd_A MGS, methylglyoxal synt 11.5 59 0.0026 11.9 1.0 34 73-106 61-94 (178)
5 2qnw_A Acyl carrier protein; m 10.0 28 0.0012 13.8 -1.1 27 77-103 48-74 (82)
6 2ava_A ACP I, acyl carrier pro 9.8 42 0.0019 12.7 -0.3 29 76-104 44-72 (82)
7 2j6b_A AFV3-109; sulfolobus, c 9.3 70 0.0031 11.4 1.7 18 72-89 44-61 (109)
8 1f80_D Acyl carrier protein; t 9.2 32 0.0014 13.5 -1.1 29 76-104 47-75 (81)
9 2ehs_A ACP, acyl carrier prote 9.0 31 0.0014 13.5 -1.2 29 76-104 41-69 (77)
10 2qag_C Septin-7; cell cycle, c 8.9 73 0.0033 11.3 1.5 12 1-12 26-38 (418)
No 1
>3mej_A Transcriptional regulator YWTF; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.49A {Bacillus subtilis}
Probab=100.00 E-value=0 Score=452.72 Aligned_cols=254 Identities=37% Similarity=0.619 Sum_probs=230.9
Q ss_pred CCCCEEEEEEEEECCCCCC---CCCCCCEEEEEEEECCCCEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8763799999976378988---8855518999998089987999997144335616889896301556764310899999
Q T0638 2 KKKPFSILFMGIEDYATKG---QKGRSDSLIVVTLDPKNKTMKMLSIPRDTRVQLAGDTTGSKTKINAAYSKGGKDETVE 78 (269)
Q Consensus 2 ~~~p~~iLl~G~D~r~~~~---~~~rsD~i~l~~i~~~~~~~~~isiPRDt~v~i~~~~~~~~~kln~ay~~gG~~~~~~ 78 (269)
+++||||||+|+|+|++.+ +.+|||+|||+++|+++++++++||||||||++|++ ++.|||+||++||++++++
T Consensus 26 ~~~~~niLl~G~D~r~~~~~~~~~~rsDti~l~~i~~~~~~~~lvSIPRDt~v~i~g~---~~~KiN~ay~~gG~~~~~~ 102 (286)
T 3mej_A 26 GKDSFSVLLLGIDAREKNGETVDQARSDANVLVTFNRKEKTAKMLSIPRDAYVNIPGH---GYDKFTHAHAYGGVDLTVK 102 (286)
T ss_dssp SSSCEEEEEEEEC----------CCCEEEEEEEEEETTTTEEEEEECCTTBEEEETTT---EEEETTHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCC---CHHHHHHHHHCCCHHHHHH
T ss_conf 9997799999971698888878888731799999869998789998376652316999---7054456461687999999
Q ss_pred HHHHHCCCCCCEEEEECHHHHHHHHHHCCCEEEECCCCCCCCCC-CCCCCCEEEECCCEEECHHHHHHHHHHCCCCCCCH
Q ss_conf 99986089843279980689998987209867734864222667-77765158707814857799998986216889866
Q T0638 79 TVENFLQIPIDKYVTVDFDGFKDVINEVGGIDVDVPFDFDEKSD-VDESKRIYFKKGEMHLNGEEALAYARMRKQDKRGD 157 (269)
Q Consensus 79 ~v~~l~gi~Id~yv~v~~~~f~~lvD~lGGV~v~v~~~~~~~~~-~~~~~~~~~~~G~q~LdG~qAl~y~R~R~~~~~gD 157 (269)
||++++|+|||||+.+||++|.++||++|||+||+|.++.+... .+..+.+++++|+|+|||+||++|+|+|+. +||
T Consensus 103 tve~llgi~Id~yv~vdf~~f~~lvDalGGV~V~v~~~~~~~~~~~~~~~~~~~~~G~q~L~G~~Al~y~R~R~~--~~D 180 (286)
T 3mej_A 103 TVEEMLDIPVDYVVESNFTAFEDVVNELNGVKVTVKSDKVIQQIKKDTKGKVVLQKGTHTLDGEEALAYVRTRKA--DSD 180 (286)
T ss_dssp HHHHHHCSCCCEEEEEEHHHHHHHHHHTTCEEEEECCHHHHHHHHHHTTTSCCCCSEEEEECHHHHHHHHHCCC----CC
T ss_pred HHHHHHCCCCCEEEEECHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEECCCCEEECHHHHHHHHHCCCC--CCH
T ss_conf 999986999865999858999999985399899756631123466688771563588889879999874521779--980
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEECCCCEE
Q ss_conf 89999999999999999727655446999999876210637898999999999853686752689963012100578648
Q T0638 158 FGRNDRQKQILNALIDRMSSASNIAKIDKIAEKASENVETNIRITEGLALQQIYSGFTSKKIDTLSITGSDLYLGPNNTY 237 (269)
Q Consensus 158 ~~R~~rQq~vl~al~~k~~~~~~~~~~~~l~~~~~~~i~Tnls~~~~~~l~~~~~~~~~~~i~~~~lp~~~~~~~~~g~~ 237 (269)
++|++|||+||+|+++|+++++++.+++++++++.++++||++..++++|+..+.++ .++.++++|+.+.. .+|.|
T Consensus 181 ~~R~~RQq~vl~al~~k~~~~~~i~~l~~l~~~~~~~v~Tnl~~~~~~~L~~~~~~~--~~i~~~~l~g~~~~--~~g~~ 256 (286)
T 3mej_A 181 LLRGQRQMEVLSAIIDKSKSLSSIPAYDDIVDTMGQNLKMNLSLKDAIGLFPFITSL--KSVESIQLTGYDYE--PAGVY 256 (286)
T ss_dssp CSHHHHHHHHHHHHHHHHHCC----------CCCCCSCEESSCHHHHHHHHHHHTTC--SEEEEECCCEEEEC--TTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHC--CCCCEEEEECCCEE--ECCEE
T ss_conf 869999999999999987496637789999999870568689989999999998716--89706985066454--28858
Q ss_pred EEEECHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999687999999999998528998864
Q T0638 238 YFEPDATNLEKVRKTLQEHLDYTPLEH 264 (269)
Q Consensus 238 ~~~~d~~~~~~~~~~l~~~~~~~p~~~ 264 (269)
|+.+|+++++++++.|+++++......
T Consensus 257 y~~~d~~~~~~i~~~l~~dl~l~e~~~ 283 (286)
T 3mej_A 257 YFKLNQQKLQEVKKELQNDLGVLEHHH 283 (286)
T ss_dssp EEEECHHHHHHHHHHHHHHHTCC----
T ss_pred EEEECHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999499999999999997289851145
No 2
>3bpj_A Eukaryotic translation initiation factor 3 subunit J; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, polymorphism; 1.85A {Homo sapiens}
Probab=27.67 E-value=25 Score=14.09 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCCC
Q ss_conf 9999999999727655446999999876210637898999999999853686
Q T0638 165 KQILNALIDRMSSASNIAKIDKIAEKASENVETNIRITEGLALQQIYSGFTS 216 (269)
Q Consensus 165 q~vl~al~~k~~~~~~~~~~~~l~~~~~~~i~Tnls~~~~~~l~~~~~~~~~ 216 (269)
++|=.++..++.+...-..++.++..+...+..+|+..++..++..+..+..
T Consensus 17 ~e~~~~l~~kl~~~~ks~~Y~~fle~l~R~l~~~L~~~~iKkv~ssl~~l~n 68 (80)
T 3bpj_A 17 TEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKITNSLTVLCS 68 (80)
T ss_dssp HHHHHHHHHHHGGGTTSTTHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999986035713799999999999821999999999999999999
No 3
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas aeruginosa} SCOP: c.76.1.2
Probab=18.08 E-value=39 Score=12.94 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=12.6
Q ss_pred CCCCCEEEEEEEEECC
Q ss_conf 9876379999997637
Q T0638 1 MKKKPFSILFMGIEDY 16 (269)
Q Consensus 1 ~~~~p~~iLl~G~D~r 16 (269)
|+|+| |||++=+|+-
T Consensus 1 m~~rP-NIl~I~~Dd~ 15 (536)
T 1hdh_A 1 MSKRP-NFLVIVADDL 15 (536)
T ss_dssp --CCC-EEEEEEESSC
T ss_pred CCCCC-EEEEEEECCC
T ss_conf 98898-7999987288
No 4
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=11.46 E-value=59 Score=11.86 Aligned_cols=34 Identities=9% Similarity=0.123 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHC
Q ss_conf 8999999998608984327998068999898720
Q T0638 73 KDETVETVENFLQIPIDKYVTVDFDGFKDVINEV 106 (269)
Q Consensus 73 ~~~~~~~v~~l~gi~Id~yv~v~~~~f~~lvD~l 106 (269)
.+.+.+.+++..|+++.........|-..++|.+
T Consensus 61 T~GTa~~L~e~~gi~v~~v~k~~~gG~p~I~d~I 94 (178)
T 1vmd_A 61 TGTTGALLQEKLGLKVHRLKSGPLGGDQQIGAMI 94 (178)
T ss_dssp CHHHHHHHHHHHCCCCEECSCGGGTHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHH
T ss_conf 1019999986029648998558776667899999
No 5
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics consortium, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.90A {Toxoplasma gondii RH}
Probab=10.05 E-value=28 Score=13.78 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=9.3
Q ss_pred HHHHHHHCCCCCCEEEEECHHHHHHHH
Q ss_conf 999998608984327998068999898
Q T0638 77 VETVENFLQIPIDKYVTVDFDGFKDVI 103 (269)
Q Consensus 77 ~~~v~~l~gi~Id~yv~v~~~~f~~lv 103 (269)
+..+++-||++|+.....++..+.+++
T Consensus 48 ~~~ie~~f~i~i~~~~~~~~~Tv~~l~ 74 (82)
T 2qnw_A 48 VMAFEEKFGVSIPDEEASKIATVQDAL 74 (82)
T ss_dssp HHHHHHHHTCCCCHHHHTTCCBHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHCCCCHHHHH
T ss_conf 999999988899999986399999999
No 6
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A*
Probab=9.82 E-value=42 Score=12.71 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=12.5
Q ss_pred HHHHHHHHCCCCCCEEEEECHHHHHHHHH
Q ss_conf 99999986089843279980689998987
Q T0638 76 TVETVENFLQIPIDKYVTVDFDGFKDVIN 104 (269)
Q Consensus 76 ~~~~v~~l~gi~Id~yv~v~~~~f~~lvD 104 (269)
++..+++-||++|+.-...++..+.++++
T Consensus 44 l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~ 72 (82)
T 2ava_A 44 IVMNLEEEFGINVDEDKAQDISTIQQAAD 72 (82)
T ss_dssp HHHHHHHHTTCCCCGGGSSSCCSHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHCCCCHHHHHH
T ss_conf 99999988547899999873999999999
No 7
>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A
Probab=9.32 E-value=70 Score=11.40 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 089999999986089843
Q T0638 72 GKDETVETVENFLQIPID 89 (269)
Q Consensus 72 G~~~~~~~v~~l~gi~Id 89 (269)
|.+.+++.+++++|+.|.
T Consensus 44 GH~aTA~~ls~llg~~ip 61 (109)
T 2j6b_A 44 GHQATAELLSSILGVNVP 61 (109)
T ss_dssp CSHHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHCCCCC
T ss_conf 658899999998586334
No 8
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 1hy8_A
Probab=9.21 E-value=32 Score=13.45 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=11.8
Q ss_pred HHHHHHHHCCCCCCEEEEECHHHHHHHHH
Q ss_conf 99999986089843279980689998987
Q T0638 76 TVETVENFLQIPIDKYVTVDFDGFKDVIN 104 (269)
Q Consensus 76 ~~~~v~~l~gi~Id~yv~v~~~~f~~lvD 104 (269)
++..|++-||++|+--...++..+.++++
T Consensus 47 l~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 75 (81)
T 1f80_D 47 LVMELEDEFDMEISDEDAEKIATVGDAVN 75 (81)
T ss_dssp HHHHHHHHTTCCCCHHHHHHCCBHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHCCCCHHHHHH
T ss_conf 99999999889989999863999999999
No 9
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.30A {Aquifex aeolicus VF5} PDB: 2eht_A
Probab=9.00 E-value=31 Score=13.47 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=12.9
Q ss_pred HHHHHHHHCCCCCCEEEEECHHHHHHHHH
Q ss_conf 99999986089843279980689998987
Q T0638 76 TVETVENFLQIPIDKYVTVDFDGFKDVIN 104 (269)
Q Consensus 76 ~~~~v~~l~gi~Id~yv~v~~~~f~~lvD 104 (269)
++..|++.||++|+--...++..+.++++
T Consensus 41 l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~ 69 (77)
T 2ehs_A 41 LIMAFEEEFGIEIPDEDAEKIQTVGDVIN 69 (77)
T ss_dssp HHHHHHHHHTCCCCHHHHHTCCBHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHCCCCHHHHHH
T ss_conf 99999999889989999871999999999
No 10
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=8.89 E-value=73 Score=11.30 Aligned_cols=12 Identities=25% Similarity=0.786 Sum_probs=0.0
Q ss_pred CCCC-CEEEEEEE
Q ss_conf 9876-37999999
Q T0638 1 MKKK-PFSILFMG 12 (269)
Q Consensus 1 ~~~~-p~~iLl~G 12 (269)
+++. +|||||+|
T Consensus 26 ~~~~~~~~iLVvG 38 (418)
T 2qag_C 26 VKRGFEFTLMVVG 38 (418)
T ss_dssp CC-CCCEEEEEEC
T ss_pred HCCCCCEEEEEEC
T ss_conf 2278724999988
Done!