Query T0638 3NXH, Bacillus subtilis, 269 residues
Match_columns 269
No_of_seqs 113 out of 1367
Neff 7.4
Searched_HMMs 15564
Date Thu Jul 22 15:07:12 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0638.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0638.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1stza1 a.4.5.51 (A:14-100) He 20.4 24 0.0015 13.3 5.0 49 162-214 4-52 (87)
2 d1pp0a_ d.103.1.1 (A:) Volvato 20.2 24 0.0015 13.2 1.7 38 76-114 20-57 (194)
3 d2j6ba1 d.321.1.1 (A:1-109) Af 13.6 35 0.0022 12.3 1.7 18 72-89 44-61 (109)
4 d2j6ba1 d.321.1.1 (A:1-109) Af 12.0 39 0.0025 12.0 1.7 18 72-89 44-61 (109)
5 d1jhfa1 a.4.5.2 (A:2-72) LexA 10.8 43 0.0028 11.7 2.6 48 161-213 4-51 (71)
6 d1ny8a_ d.52.6.1 (A:) Hypothet 10.1 45 0.0029 11.6 0.9 21 157-177 44-64 (97)
7 d1tuaa1 d.51.1.1 (A:1-84) Hypo 9.7 47 0.003 11.5 2.7 35 46-89 3-37 (84)
8 d2j85a1 d.321.1.1 (A:2-116) Hy 9.0 50 0.0032 11.3 1.7 18 72-89 49-66 (115)
9 d1sxje1 a.80.1.1 (E:256-354) R 8.8 51 0.0033 11.3 4.3 47 165-211 5-52 (99)
10 d1ny8a_ d.52.6.1 (A:) Hypothet 8.7 52 0.0033 11.2 0.9 21 157-177 44-64 (97)
No 1
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.42 E-value=24 Score=13.25 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCC
Q ss_conf 99999999999997276554469999998762106378989999999998536
Q T0638 162 DRQKQILNALIDRMSSASNIAKIDKIAEKASENVETNIRITEGLALQQIYSGF 214 (269)
Q Consensus 162 ~rQq~vl~al~~k~~~~~~~~~~~~l~~~~~~~i~Tnls~~~~~~l~~~~~~~ 214 (269)
.||+++++++++.......+.....|.+ .+.-++|...+......+.+.
T Consensus 4 ~Rq~~IL~~Ive~y~~~g~Pv~s~~i~~----~~~l~~S~aTIRn~m~~LE~~ 52 (87)
T d1stza1 4 DRQRKVLYCIVREYIENKKPVSSQRVLE----VSNIEFSSATIRNDMKKLEYL 52 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCSCBCHHHHHH----HSCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHH----HHCCCCCHHHHHHHHHHHHHC
T ss_conf 8999999999999998098467999998----708898989999999999987
No 2
>d1pp0a_ d.103.1.1 (A:) Volvatoxin A2 {Volvariella volvacea, different isoforms [TaxId: 36659]}
Probab=20.20 E-value=24 Score=13.22 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=27.6
Q ss_pred HHHHHHHHCCCCCCEEEEECHHHHHHHHHHCCCEEEECC
Q ss_conf 999999860898432799806899989872098677348
Q T0638 76 TVETVENFLQIPIDKYVTVDFDGFKDVINEVGGIDVDVP 114 (269)
Q Consensus 76 ~~~~v~~l~gi~Id~yv~v~~~~f~~lvD~lGGV~v~v~ 114 (269)
+++-.......+ ...-.+||.+|+..+|..+|.|+...
T Consensus 20 v~kl~~~~~~le-~d~~~fdwp~fk~~id~y~g~Dl~f~ 57 (194)
T d1pp0a_ 20 VLKFSGKYLKLE-QDKAYFDWPGFKTAIDNYTGEDLSFD 57 (194)
T ss_dssp HHHHHHTTEEEE-TTEEEECHHHHHHHHHTCCCSSEEEE
T ss_pred HHHHHHHHHHHC-CCCCCCCCHHHHHHHHHCCCCEEEHH
T ss_conf 999975661012-67654667217888751478600210
No 3
>d2j6ba1 d.321.1.1 (A:1-109) Afv3-109 {Acidianus filamentous virus 1 [TaxId: 235266]}
Probab=13.61 E-value=35 Score=12.25 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 089999999986089843
Q T0638 72 GKDETVETVENFLQIPID 89 (269)
Q Consensus 72 G~~~~~~~v~~l~gi~Id 89 (269)
|.+++++.+++++|++|.
T Consensus 44 GH~aTaqlls~llgv~i~ 61 (109)
T d2j6ba1 44 GHQATAELLSSILGVNVP 61 (109)
T ss_dssp CSHHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHCCCCE
T ss_conf 335799999998487200
No 4
>d2j6ba1 d.321.1.1 (A:1-109) Afv3-109 {Acidianus filamentous virus 1 [TaxId: 235266]}
Probab=12.02 E-value=39 Score=11.97 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 089999999986089843
Q T0638 72 GKDETVETVENFLQIPID 89 (269)
Q Consensus 72 G~~~~~~~v~~l~gi~Id 89 (269)
|.+.+++.+++++|+.|.
T Consensus 44 GH~aTAqlls~Llgv~i~ 61 (109)
T d2j6ba1 44 GHQATAELLSSILGVNVP 61 (109)
T ss_dssp CSHHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHCCCCC
T ss_conf 529899999998586324
No 5
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=10.81 E-value=43 Score=11.73 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHC
Q ss_conf 99999999999999727655446999999876210637898999999999853
Q T0638 161 NDRQKQILNALIDRMSSASNIAKIDKIAEKASENVETNIRITEGLALQQIYSG 213 (269)
Q Consensus 161 ~~rQq~vl~al~~k~~~~~~~~~~~~l~~~~~~~i~Tnls~~~~~~l~~~~~~ 213 (269)
..||++|+..+.+-....+-+..+..|...++ + . |...+-.....+..
T Consensus 4 T~rQ~~vL~~I~~~~~~~G~~Ps~rei~~~~g--~--~-S~stv~~~l~~Le~ 51 (71)
T d1jhfa1 4 TARQQEVFDLIRDHISQTGMPPTRAEIAQRLG--F--R-SPNAAEEHLKALAR 51 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTT--C--S-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC--C--C-CHHHHHHHHHHHHH
T ss_conf 99999999999999998288988999997729--9--9-99999999999999
No 6
>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}
Probab=10.12 E-value=45 Score=11.58 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 689999999999999999727
Q T0638 157 DFGRNDRQKQILNALIDRMSS 177 (269)
Q Consensus 157 D~~R~~rQq~vl~al~~k~~~ 177 (269)
+..|++|||.|.++|-..+.+
T Consensus 44 g~s~i~RHr~Vy~~L~~~i~~ 64 (97)
T d1ny8a_ 44 GMSRVKKQQTVYGPLMEYIAD 64 (97)
T ss_dssp SSCHHHHHHHHHTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCC
T ss_conf 898779999999999887435
No 7
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=9.68 E-value=47 Score=11.48 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=25.5
Q ss_pred CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 14433561688989630155676431089999999986089843
Q T0638 46 PRDTRVQLAGDTTGSKTKINAAYSKGGKDETVETVENFLQIPID 89 (269)
Q Consensus 46 PRDt~v~i~~~~~~~~~kln~ay~~gG~~~~~~~v~~l~gi~Id 89 (269)
|| .++.+|. +|+...-+.|| .+++.|++.+|..|+
T Consensus 3 pr-i~i~ip~------~~ig~vIG~gG--~~Ik~i~~~tg~~I~ 37 (84)
T d1tuaa1 3 PR-IYVKVKP------ERLGAVIGPRG--EVKAEIMRRTGTVIT 37 (84)
T ss_dssp CC-EEEECCG------GGHHHHHCGGG--HHHHHHHHHHTEEEE
T ss_pred CC-EEEEECH------HHCCEEECCCC--HHHHHHHHHHCCEEE
T ss_conf 85-8999497------88073336995--539999999898899
No 8
>d2j85a1 d.321.1.1 (A:2-116) Hypothetical protein B116 {Sulfolobus turreted icosahedral virus, STIV [TaxId: 269145]}
Probab=9.04 E-value=50 Score=11.34 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 089999999986089843
Q T0638 72 GKDETVETVENFLQIPID 89 (269)
Q Consensus 72 G~~~~~~~v~~l~gi~Id 89 (269)
|.+.+++.++.++|+.|.
T Consensus 49 GH~aTAqlls~llgv~i~ 66 (115)
T d2j85a1 49 GHDSTINLVNTLCGTQLQ 66 (115)
T ss_dssp CCHHHHHHHHHHHCCCCC
T ss_pred CCHHHHHHHHHHHCCCCC
T ss_conf 629899999997387767
No 9
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.80 E-value=51 Score=11.28 Aligned_cols=47 Identities=9% Similarity=0.042 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCHHHHHH-HHHHH
Q ss_conf 999999999972765544699999987621063789899999-99998
Q T0638 165 KQILNALIDRMSSASNIAKIDKIAEKASENVETNIRITEGLA-LQQIY 211 (269)
Q Consensus 165 q~vl~al~~k~~~~~~~~~~~~l~~~~~~~i~Tnls~~~~~~-l~~~~ 211 (269)
+.++..+++.+.+-.++.++..+-..+.+-+.++++++-++. |...+
T Consensus 5 e~~i~~ia~~I~~eqsp~~L~~iR~~lYeLL~~cIpp~~Ilk~L~~~L 52 (99)
T d1sxje1 5 IIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSL 52 (99)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999999867999999999999999983598999999999999
No 10
>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}
Probab=8.67 E-value=52 Score=11.24 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 689999999999999999727
Q T0638 157 DFGRNDRQKQILNALIDRMSS 177 (269)
Q Consensus 157 D~~R~~rQq~vl~al~~k~~~ 177 (269)
+..|++|||.|..++-..+.+
T Consensus 44 g~s~v~RHr~Vy~~L~~~i~~ 64 (97)
T d1ny8a_ 44 GMSRVKKQQTVYGPLMEYIAD 64 (97)
T ss_dssp SSCHHHHHHHHHTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCC
T ss_conf 998899999999999998747
Done!