Query T0639 3NYM , Neisseria meningitidis MC58, 128 residues
Match_columns 128
No_of_seqs 2 out of 4
Neff 1.5
Searched_HMMs 15564
Date Thu Jul 22 14:52:28 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0639.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0639.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ih2a2 d.287.1.1 (A:244-413) 11.0 32 0.0021 13.9 0.3 20 19-38 117-136 (170)
2 d2nyga1 c.140.1.2 (A:2-271) Un 10.6 53 0.0034 12.6 1.6 22 5-26 12-33 (270)
3 d1lb2b_ a.60.3.1 (B:) C-termin 9.9 56 0.0036 12.4 2.1 23 4-26 48-70 (72)
4 d1gm5a1 a.24.21.1 (A:7-105) Re 9.7 57 0.0037 12.3 1.9 19 53-71 49-67 (99)
5 d1cfra_ c.52.1.7 (A:) Restrict 9.5 58 0.0037 12.3 1.2 23 60-82 207-229 (283)
6 d1jlia_ a.26.1.2 (A:) Interleu 9.0 61 0.0039 12.2 2.9 24 48-72 86-109 (112)
7 d2in1a1 d.20.1.4 (A:3-164) Ufm 8.7 63 0.004 12.1 2.4 36 49-85 21-57 (162)
8 d2ctda1 g.37.1.1 (A:8-60) Zinc 8.6 52 0.0033 12.6 0.6 10 63-72 43-52 (53)
9 d2j7za1 d.9.1.1 (A:1-67) Strom 8.1 49 0.0031 12.8 0.3 12 37-48 51-62 (67)
10 d1mzga_ d.224.1.1 (A:) SufE (Y 7.2 71 0.0046 11.7 0.8 22 55-76 6-27 (144)
No 1
>d2ih2a2 d.287.1.1 (A:244-413) DNA methylase TaqI, C-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=10.99 E-value=32 Score=13.94 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=16.3
Q ss_pred HHCCCCCCCHHHHHHHCCCC
Q ss_conf 42264421224454421567
Q T0639 19 LYQGFDLTDPKVSEEVNHET 38 (128)
Q Consensus 19 l~QGFDL~~~~~sE~~N~E~ 38 (128)
-|+||||.+-.|-+=||||-
T Consensus 117 pKe~vdl~~~eVV~~LNSe~ 136 (170)
T d2ih2a2 117 PKEGVRLDPSSLVQWLNSEA 136 (170)
T ss_dssp ECTTEEECHHHHHHHHTSHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
T ss_conf 21367868999999971799
No 2
>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD {Bacillus subtilis [TaxId: 1423]}
Probab=10.61 E-value=53 Score=12.55 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3488999999972342264421
Q T0639 5 ETLNDIKKILINVGLYQGFDLT 26 (128)
Q Consensus 5 ~~~N~iK~~L~~~Gl~QGFDL~ 26 (128)
.|-+++.+.|+++||+.|=.+.
T Consensus 12 ~T~~~l~~~L~~LGi~kgd~v~ 33 (270)
T d2nyga1 12 RTKQSITEDLKALGLKKGMTVL 33 (270)
T ss_dssp BCHHHHHHHHHHHTCCTTCEEE
T ss_pred CCHHHHHHHHHHCCCCCCCEEE
T ss_conf 7899999999982989959999
No 3
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=9.88 E-value=56 Score=12.38 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 23488999999972342264421
Q T0639 4 METLNDIKKILINVGLYQGFDLT 26 (128)
Q Consensus 4 M~~~N~iK~~L~~~Gl~QGFDL~ 26 (128)
-+.+..||+.|.+.|+.-|-++-
T Consensus 48 ~KSl~EI~~~L~~~gL~lgm~~~ 70 (72)
T d1lb2b_ 48 KKSLTEIKDVLASRGLSLGMRLE 70 (72)
T ss_dssp HHHHHHHHHHHHHTTCCSSCCCS
T ss_pred HHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 86899999999984987788799
No 4
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.71 E-value=57 Score=12.34 Aligned_cols=19 Identities=32% Similarity=0.653 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 2136899999999999998
Q T0639 53 WDNEFKEDLKNFLDYMEVC 71 (128)
Q Consensus 53 W~~E~~ED~~~F~~~M~~~ 71 (128)
-|+|.+|-|..|++|.+.-
T Consensus 49 ~n~ei~eKlqef~dYI~~~ 67 (99)
T d1gm5a1 49 ENKDLEEKLQAFLDYVKEI 67 (99)
T ss_dssp GCHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 6868999999999998740
No 5
>d1cfra_ c.52.1.7 (A:) Restriction endonuclease Cfr10I {Citrobacter freundii [TaxId: 546]}
Probab=9.48 E-value=58 Score=12.29 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99999999999877615412567
Q T0639 60 DLKNFLDYMEVCQLALNDKNFKI 82 (128)
Q Consensus 60 D~~~F~~~M~~~Q~Al~~~~~K~ 82 (128)
-+|..|+|.+++-+.+|+++||-
T Consensus 207 imKaL~~hlq~r~wt~Np~~~ky 229 (283)
T d1cfra_ 207 LMKALYTHLQTRTWTINPTGIRY 229 (283)
T ss_dssp HHHHHHHHHHHHTTCSSCCCCEE
T ss_pred HHHHHHHHHHHEEEEECCCCCEE
T ss_conf 99999998875264346876247
No 6
>d1jlia_ a.26.1.2 (A:) Interleukin-3 (IL-3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.01 E-value=61 Score=12.17 Aligned_cols=24 Identities=33% Similarity=0.792 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1577621368999999999999987
Q T0639 48 TSDGNWDNEFKEDLKNFLDYMEVCQ 72 (128)
Q Consensus 48 tSD~~W~~E~~ED~~~F~~~M~~~Q 72 (128)
--||+|+| |.--++-++-+.+--|
T Consensus 86 I~~~d~~D-Fr~KL~fYl~~L~n~q 109 (112)
T d1jlia_ 86 IKDGDWNE-FRRKLTFYLKTLENAQ 109 (112)
T ss_dssp CCSSCHHH-HHHHHHHHHHHHHHHH
T ss_pred ECCCCHHH-HHHHHHHHHHHHHHCC
T ss_conf 13697799-9999999999985205
No 7
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.68 E-value=63 Score=12.09 Aligned_cols=36 Identities=25% Similarity=0.593 Sum_probs=25.6
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 5776-213689999999999999877615412567889
Q T0639 49 SDGN-WDNEFKEDLKNFLDYMEVCQLALNDKNFKIASN 85 (128)
Q Consensus 49 SD~~-W~~E~~ED~~~F~~~M~~~Q~Al~~~~~K~A~~ 85 (128)
.||. |...++|.+.+..+|++.-. +-|+.=|++.||
T Consensus 21 rD~e~W~~RLKEEy~aLI~Yv~nNK-~~dndWF~lesn 57 (162)
T d2in1a1 21 RDRELWVQRLKEEYQSLIRYVENNK-NADNDWFRLESN 57 (162)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEECCC
T ss_conf 8779999999999999999998563-036870883137
No 8
>d2ctda1 g.37.1.1 (A:8-60) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.56 E-value=52 Score=12.61 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=6.5
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999987
Q T0639 63 NFLDYMEVCQ 72 (128)
Q Consensus 63 ~F~~~M~~~Q 72 (128)
..-.||++||
T Consensus 43 GLKKHMe~C~ 52 (53)
T d2ctda1 43 GLKKHMENCK 52 (53)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHC
T ss_conf 9999998853
No 9
>d2j7za1 d.9.1.1 (A:1-67) Stromal cell-derived factor-1 (SDF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.14 E-value=49 Score=12.78 Aligned_cols=12 Identities=33% Similarity=0.924 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHC
Q ss_conf 673036654201
Q T0639 37 ETANMKWIKDYT 48 (128)
Q Consensus 37 E~~~~~Wi~~Yt 48 (128)
-+|.+|||..|-
T Consensus 51 i~Pk~kWiQqYL 62 (67)
T d2j7za1 51 IDPKLKWIQEYL 62 (67)
T ss_dssp BCTTCTTHHHHH
T ss_pred ECCHHHHHHHHH
T ss_conf 680679999999
No 10
>d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]}
Probab=7.20 E-value=71 Score=11.74 Aligned_cols=22 Identities=5% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3689999999999999877615
Q T0639 55 NEFKEDLKNFLDYMEVCQLALN 76 (128)
Q Consensus 55 ~E~~ED~~~F~~~M~~~Q~Al~ 76 (128)
+++-++|..+-+.++-|||-|+
T Consensus 6 ~~l~~~f~~~~dwe~ry~~Li~ 27 (144)
T d1mzga_ 6 EKLLRNFLRCANWEEKYLYIIE 27 (144)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999998747999999999999
Done!