Query T0640 3NYW, Bacteroides thetaiotaomicron, 250 residues
Match_columns 250
No_of_seqs 142 out of 21445
Neff 8.3
Searched_HMMs 11830
Date Thu Jul 22 15:50:14 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0640.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pfamA_24_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pfamAsearch/T0640.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00106 adh_short: short chai 100.0 1.2E-30 9.9E-35 217.3 17.1 162 8-176 1-166 (167)
2 PF08659 KR: KR domain; Inter 99.8 3.4E-20 2.9E-24 148.8 11.6 175 9-191 2-178 (181)
3 PF01370 Epimerase: NAD depend 99.5 1.2E-12 1E-16 99.4 14.7 193 10-226 1-229 (238)
4 PF02719 Polysacc_synt_2: Poly 99.4 2.7E-13 2.3E-17 103.6 9.9 199 10-223 1-220 (295)
5 PF08643 DUF1776: Fungal famil 99.4 3.6E-12 3.1E-16 96.2 14.6 182 6-193 2-203 (299)
6 PF01073 3Beta_HSD: 3-beta hyd 99.3 7.1E-13 6E-17 100.9 5.2 163 11-194 1-184 (280)
7 PF07993 NAD_binding_4: Male s 99.2 4.4E-10 3.8E-14 82.6 13.4 165 12-193 1-200 (249)
8 PF04321 RmlD_sub_bind: RmlD s 99.0 2.8E-10 2.4E-14 83.9 7.1 173 10-226 3-201 (286)
9 PF05368 NmrA: NmrA-like famil 99.0 3.6E-09 3E-13 76.7 11.6 178 10-228 1-199 (233)
10 PF03435 Saccharop_dh: Sacchar 98.4 3.8E-07 3.2E-11 63.4 7.3 76 10-98 1-78 (386)
11 PF01488 Shikimate_DH: Shikima 97.7 9.6E-05 8.1E-09 47.7 9.0 79 4-100 9-88 (135)
12 PF02737 3HCDH_N: 3-hydroxyacy 97.0 0.0023 1.9E-07 38.7 8.9 45 8-54 1-45 (180)
13 PF00056 Ldh_1_N: lactate/mala 96.7 0.0017 1.5E-07 39.5 6.6 115 8-145 2-119 (142)
14 PF04127 DFP: DNA / pantothena 96.6 0.0015 1.2E-07 39.9 5.2 82 6-102 2-101 (199)
15 PF03446 NAD_binding_2: NAD bi 96.3 0.003 2.6E-07 37.9 5.6 42 7-50 2-43 (163)
16 PF05185 PRMT5: PRMT5 arginine 95.3 0.024 2E-06 32.0 6.6 76 6-93 186-264 (447)
17 PF12076 Wax2_C: WAX2 C-termin 94.7 0.021 1.8E-06 32.3 5.0 42 10-53 1-42 (164)
18 PF00899 ThiF: ThiF family; I 94.5 0.13 1.1E-05 27.3 9.0 75 6-93 2-77 (135)
19 PF02254 TrkA_N: TrkA-N domain 94.5 0.098 8.3E-06 28.0 8.0 67 10-93 1-68 (116)
20 PF01210 NAD_Gly3P_dh_N: NAD-d 94.3 0.023 1.9E-06 32.2 4.5 41 7-49 1-41 (159)
21 PF00107 ADH_zinc_N: Zinc-bind 94.3 0.13 1.1E-05 27.1 8.3 66 18-97 1-68 (130)
22 PF12241 Enoyl_reductase: Tran 93.4 0.21 1.8E-05 25.9 11.7 141 49-194 16-196 (237)
23 PF03807 F420_oxidored: NADP o 93.3 0.054 4.6E-06 29.7 4.9 42 8-51 1-46 (96)
24 PF02882 THF_DHG_CYH_C: Tetrah 92.7 0.042 3.6E-06 30.4 3.6 44 3-46 32-75 (160)
25 PF02826 2-Hacid_dh_C: D-isome 92.4 0.11 9E-06 27.7 5.4 42 3-45 32-73 (178)
26 PF12242 Eno-Rase_NADH_b: NAD( 92.3 0.054 4.6E-06 29.7 3.7 33 6-39 37-72 (78)
27 PF03721 UDPG_MGDP_dh_N: UDP-g 91.9 0.095 8E-06 28.1 4.6 40 7-48 1-40 (185)
28 PF10727 Rossmann-like: Rossma 91.9 0.034 2.9E-06 31.0 2.3 93 6-101 10-110 (127)
29 PF00208 ELFV_dehydrog: Glutam 91.9 0.13 1.1E-05 27.2 5.3 33 4-37 29-61 (244)
30 PF03853 YjeF_N: YjeF-related 91.2 0.18 1.5E-05 26.2 5.4 33 5-37 28-62 (173)
31 PF00670 AdoHcyase_NAD: S-aden 88.4 0.28 2.4E-05 25.0 4.6 42 3-45 19-60 (162)
32 PF02558 ApbA: Ketopantoate re 87.6 0.5 4.2E-05 23.4 5.4 69 15-94 5-74 (151)
33 PF01113 DapB_N: Dihydrodipico 84.0 0.63 5.3E-05 22.7 4.5 82 10-97 3-101 (124)
34 PF00070 Pyr_redox: Pyridine n 83.9 0.54 4.6E-05 23.1 4.1 61 8-94 1-61 (81)
35 PF01262 AlaDh_PNT_C: Alanine 82.3 1.2 0.0001 20.8 7.6 81 8-101 21-116 (168)
36 PF01266 DAO: FAD dependent ox 82.1 0.62 5.3E-05 22.7 3.9 30 9-40 2-31 (358)
37 PF09848 DUF2075: Uncharacteri 80.5 1.4 0.00012 20.4 7.3 49 7-55 1-55 (352)
38 PF01135 PCMT: Protein-L-isoas 80.3 1.4 0.00012 20.4 7.7 79 7-97 73-151 (209)
39 PF07991 IlvN: Acetohydroxy ac 80.0 1.5 0.00012 20.3 5.3 37 5-42 2-38 (165)
40 PF10100 DUF2338: Uncharacteri 79.8 1.5 0.00012 20.3 7.5 136 10-152 4-152 (429)
41 PF03033 Glyco_transf_28: Glyc 79.1 1.1 9.5E-05 21.0 4.4 32 9-40 1-35 (139)
42 PF03848 TehB: Tellurite resis 79.0 1.6 0.00013 20.1 6.0 58 8-71 32-89 (192)
43 PF00743 FMO-like: Flavin-bind 78.7 0.69 5.9E-05 22.4 3.2 36 6-43 1-36 (531)
44 PF05175 MTS: Methyltransferas 78.2 1.6 0.00014 20.0 8.6 75 6-95 31-106 (170)
45 PF06564 YhjQ: YhjQ protein; 75.3 1.2 0.0001 20.8 3.7 55 8-77 2-61 (243)
46 PF01118 Semialdhyde_dh: Semia 74.4 1.3 0.00011 20.7 3.6 39 8-47 1-41 (121)
47 PF06962 rRNA_methylase: Putat 73.2 2.1 0.00017 19.3 4.4 115 33-174 1-115 (140)
48 PF07475 Hpr_kinase_C: HPr Ser 68.8 1.2 0.0001 20.9 2.4 34 4-38 15-49 (171)
49 PF01656 CbiA: CobQ/CobB/MinD/ 66.7 3 0.00026 18.2 4.4 33 10-42 1-38 (194)
50 PF02374 ArsA_ATPase: Anion-tr 65.6 2.4 0.0002 18.9 3.4 74 8-86 2-87 (305)
51 PF03668 ATP_bind_2: P-loop AT 63.0 3.6 0.0003 17.8 9.7 86 8-96 2-91 (284)
52 PF00479 G6PD_N: Glucose-6-pho 61.9 1.4 0.00012 20.3 1.7 73 11-83 1-96 (183)
53 PF06057 VirJ: Bacterial virul 61.8 3.7 0.00032 17.6 4.4 62 9-92 5-72 (192)
54 PF08732 HIM1: HIM1; InterPro 61.1 3.8 0.00032 17.6 5.2 95 87-191 203-299 (410)
55 PF02602 HEM4: Uroporphyrinoge 60.4 0.56 4.7E-05 23.0 -0.6 57 22-82 2-62 (229)
56 PF01494 FAD_binding_3: FAD bi 60.0 4 0.00034 17.4 4.0 33 8-42 3-35 (356)
57 PF02670 DXP_reductoisom: 1-de 57.7 4.4 0.00037 17.2 6.5 62 10-81 1-66 (129)
58 PF00006 ATP-synt_ab: ATP synt 57.3 4.4 0.00038 17.1 4.3 12 71-82 53-64 (215)
59 PF03808 Glyco_tran_WecB: Glyc 56.8 4.5 0.00038 17.1 8.6 72 20-94 37-108 (172)
60 PF00289 CPSase_L_chain: Carba 56.2 4.6 0.00039 17.0 4.5 75 8-92 3-79 (110)
61 PF01784 NIF3: NIF3 (NGG1p int 54.8 2.4 0.0002 18.9 1.8 20 165-184 144-163 (241)
62 PF01795 Methyltransf_5: MraW 54.5 4.9 0.00042 16.8 3.7 77 13-98 28-104 (310)
63 PF01408 GFO_IDH_MocA: Oxidore 53.4 5.1 0.00043 16.7 5.4 40 8-49 2-44 (120)
64 PF03686 UPF0146: Uncharacteri 52.8 2.9 0.00024 18.4 2.0 50 6-73 14-65 (127)
65 PF09419 DUF2010: Protein of u 52.8 5.2 0.00044 16.7 5.3 73 26-118 35-109 (168)
66 PF10294 Methyltransf_16: Puta 51.5 5.5 0.00046 16.5 7.7 79 4-94 42-121 (168)
67 PF08123 DOT1: Histone methyla 50.8 5.6 0.00048 16.5 6.3 76 14-96 48-132 (205)
68 PF08883 DOPA_dioxygen: Dopa 4 50.2 5.7 0.00049 16.4 6.0 34 62-96 46-80 (104)
69 PF04273 DUF442: Putative phos 50.2 5.7 0.00049 16.4 5.6 77 18-99 14-98 (110)
70 PF03486 HI0933_like: HI0933-l 49.8 2.6 0.00022 18.6 1.4 38 8-47 2-39 (409)
71 PF00890 FAD_binding_2: FAD bi 49.5 5.9 0.0005 16.3 4.0 32 9-42 2-33 (421)
72 PF00478 IMPDH: IMP dehydrogen 49.2 6 0.0005 16.3 3.7 132 9-144 38-179 (351)
73 PF00731 AIRC: AIR carboxylase 47.9 6.2 0.00053 16.2 3.3 28 69-98 39-66 (150)
74 PF08704 GCD14: tRNA methyltra 47.3 6.4 0.00054 16.1 7.1 64 7-72 103-167 (309)
75 PF02142 MGS: MGS-like domain 46.2 5.8 0.00049 16.4 2.7 62 22-96 4-69 (95)
76 PF00532 Peripla_BP_1: family; 44.9 6.9 0.00059 15.9 8.7 185 7-222 2-199 (279)
77 PF01209 Ubie_methyltran: ubiE 44.6 7 0.00059 15.8 5.1 78 7-97 48-126 (233)
78 PF07992 Pyr_redox_2: Pyridine 43.7 7.2 0.00061 15.8 4.2 31 8-40 1-31 (201)
79 PF06418 CTP_synth_N: CTP synt 42.6 7.5 0.00063 15.7 3.0 32 8-39 2-39 (275)
80 PF02056 Glyco_hydro_4: Family 41.9 7.7 0.00065 15.6 5.5 76 8-97 1-83 (183)
81 PF02702 KdpD: Osmosensitive K 41.8 7.7 0.00065 15.6 4.4 48 5-52 2-54 (211)
82 PF01081 Aldolase: KDPG and KH 41.8 7.7 0.00065 15.6 6.8 70 7-80 9-79 (196)
83 PF02310 B12-binding: B12 bind 39.6 8.3 0.0007 15.3 6.9 72 17-92 13-86 (121)
84 PF01946 Thi4: Thi4 family; I 39.4 8.4 0.00071 15.3 3.7 35 6-42 17-51 (230)
85 PF09314 DUF1972: Domain of un 38.9 8.5 0.00072 15.3 4.7 34 7-42 2-45 (185)
86 PF06325 PrmA: Ribosomal prote 38.4 8.7 0.00073 15.2 6.9 16 23-38 17-33 (295)
87 PF04007 DUF354: Protein of un 38.1 8.8 0.00074 15.2 3.7 30 20-49 16-45 (335)
88 PF05724 TPMT: Thiopurine S-me 37.4 9 0.00076 15.1 4.0 42 6-50 37-78 (216)
89 PF04672 DUF574: Protein of un 37.2 9.1 0.00077 15.1 3.9 150 20-197 85-243 (267)
90 PF02733 Dak1: Dak1 domain; I 36.5 4.8 0.0004 16.9 1.0 17 5-21 26-42 (325)
91 PF00931 NB-ARC: NB-ARC domain 36.5 9.3 0.00079 15.0 5.7 46 5-51 17-70 (285)
92 PF06745 KaiC: KaiC; InterPro 33.3 10 0.00088 14.7 9.4 47 5-52 17-68 (225)
93 PF01745 IPT: Isopentenyl tran 33.0 11 0.00089 14.7 3.5 34 8-41 2-36 (233)
94 PF03602 Cons_hypoth95: Conser 32.9 11 0.0009 14.7 8.0 78 5-93 41-120 (183)
95 PF04723 GRDA: Glycine reducta 32.6 11 0.00091 14.6 7.7 65 5-93 3-72 (150)
96 PF02844 GARS_N: Phosphoribosy 32.0 11 0.00093 14.6 5.9 89 8-121 2-92 (100)
97 PF05894 Podovirus_Gp16: Podov 30.9 11 0.00096 14.5 5.1 46 4-50 14-65 (333)
98 PF01264 Chorismate_synt: Chor 30.2 12 0.00099 14.4 3.2 93 19-118 127-234 (346)
99 PF01583 APS_kinase: Adenylyls 29.1 12 0.001 14.3 9.7 35 6-40 1-39 (156)
100 PF08303 tRNA_lig_kinase: tRNA 28.9 12 0.001 14.2 6.2 28 16-43 40-67 (169)
101 PF00365 PFK: Phosphofructokin 27.6 13 0.0011 14.1 4.0 88 7-97 1-102 (282)
102 PF02579 Nitro_FeMo-Co: Dinitr 27.1 13 0.0011 14.0 3.9 29 14-42 36-64 (94)
103 PF05206 TRM13: Methyltransfer 26.8 13 0.0011 14.0 7.2 65 6-72 18-86 (259)
104 PF04131 NanE: Putative N-acet 25.7 14 0.0012 13.9 4.4 15 179-195 143-157 (192)
105 PF10087 DUF2325: Uncharacteri 25.2 14 0.0012 13.8 8.7 85 10-97 2-86 (97)
106 PF03796 DnaB_C: DnaB-like hel 25.2 14 0.0012 13.8 10.4 154 5-187 16-177 (185)
107 PF10686 DUF2493: Protein of u 24.9 14 0.0012 13.8 4.3 16 70-85 16-31 (71)
108 PF01175 Urocanase: Urocanase; 24.9 14 0.0012 13.8 6.6 75 4-90 154-228 (546)
109 PF00732 GMC_oxred_N: GMC oxid 24.7 15 0.0012 13.8 3.1 28 11-39 4-32 (298)
110 PF08242 Methyltransf_12: Meth 24.5 15 0.0012 13.7 6.0 67 14-94 4-73 (99)
111 PF12146 Hydrolase_4: Putative 24.4 15 0.0013 13.7 4.4 36 6-41 16-53 (79)
112 PF01134 GIDA: Glucose inhibit 23.8 15 0.0013 13.6 2.5 33 8-42 1-33 (392)
113 PF02353 CMAS: Cyclopropane-fa 23.5 15 0.0013 13.6 5.0 61 7-71 63-124 (273)
114 PF02283 CobU: Cobinamide kina 23.4 16 0.0013 13.6 5.8 126 10-155 1-132 (167)
115 PF05834 Lycopene_cycl: Lycope 23.0 16 0.0013 13.5 3.9 32 10-42 2-35 (374)
116 PF01075 Glyco_transf_9: Glyco 22.3 16 0.0014 13.4 5.1 17 22-38 3-19 (247)
117 PF05116 S6PP: Sucrose-6F-phos 22.3 16 0.0014 13.4 5.5 130 43-187 20-151 (247)
118 PF01139 UPF0027: Uncharacteri 21.6 17 0.0014 13.4 2.4 21 156-176 339-359 (420)
119 PF03753 HHV6-IE: Human herpes 21.1 11 0.00093 14.5 0.7 18 10-27 76-93 (993)
No 1
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called , , 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains , the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains .; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 2q2w_D 2q2q_A 2q2v_B 1wmb_B 1x1t_A 2ag5_A 2rh4_A 3csd_B 1x7g_A 1x7h_A ....
Probab=99.97 E-value=1.2e-30 Score=217.30 Aligned_cols=162 Identities=33% Similarity=0.488 Sum_probs=149.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC--HHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7899965985689999999986598-69999579--89999999999984278874289972479989999999999996
Q T0640 8 GLAIITGASQGIGAVIAAGLATDGY-RVVLIARS--KQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK 84 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G~-~V~i~~r~--~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (250)
|++|||||++|||+++|++|+++|+ .|++++|+ .+.++++.+++...+ .++.+++||++++++++++++++..+
T Consensus 1 k~vlItGa~~giG~~ia~~l~~~g~~~vi~~~r~~~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~i~~~~~~~~~~ 77 (167)
T PF00106_consen 1 KTVLITGASGGIGRAIARELAERGASVVILTSRNSLEEELEELIAELPASG---GEIEYIQCDISDPESIKALIEEVSSK 77 (167)
T ss_dssp -EEEEESTTSSTT-HHHHHHHHTTTEEEEEEESSHCHHHHHHHHHHHHHHT---SEEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCC---CCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 999997998299999999999849905403311223311122222222223---31014542133220111222222222
Q ss_pred CCCCEEEEECCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHCCCCCCCHHHHHHHH
Q ss_conf 298138862354445653200-0123445443321122200000000110001121311331111046677606688899
Q T0640 85 YGAVDILVNAAAMFMDGSLSE-PVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKF 163 (250)
Q Consensus 85 ~g~iD~lv~nAG~~~~~~~~~-~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKa 163 (250)
++++|++|||+|.....++.+ +.|+|++++++|+.+++.+.|.+.+ ++.|+||+++|.++..+.|++..|+++|+
T Consensus 78 ~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~ii~isS~~~~~~~~~~~~Y~~sKa 153 (167)
T PF00106_consen 78 FGPLDVLIHNAGIFPPKPFEDTSPEDFEKTFQVNVFAPFLLAKALAP----QDGGSIINISSIAGLRPNPGYAAYAASKA 153 (167)
T ss_dssp HSSBSEEEEE---TTTSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH----HTCEEEEEEEEGGGTSBHTTTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 22221101321112222212222222222222222222222211122----34332676045430147999758999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999998
Q T0640 164 ALLGLAESLYREL 176 (250)
Q Consensus 164 al~~l~~~la~e~ 176 (250)
|+.+|+|+++.|+
T Consensus 154 al~~l~~~la~e~ 166 (167)
T PF00106_consen 154 ALEGLTRSLAKEL 166 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999861
No 2
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 2vz9_A 2vz8_B 2z5l_A 2fr1_A 2fr0_A.
Probab=99.82 E-value=3.4e-20 Score=148.79 Aligned_cols=175 Identities=21% Similarity=0.300 Sum_probs=144.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 899965985689999999986598-6999957989999999999984278874289972479989999999999996298
Q T0640 9 LAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGA 87 (250)
Q Consensus 9 v~lVtGas~GiG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 87 (250)
+.|||||.+|||..+++.|+++|. +|++++|+.+.-.+..+.+.+.......+.+++||++|++++.++++.+.+++++
T Consensus 2 tylItGG~GglG~~~a~~L~~~g~~~lvl~~r~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGLSLARWLAERGARHLVLLGRSGEPSAEAEALLRELRARGARVTYVRCDVTDPEAVRAALAQIRQRFGP 81 (181)
T ss_dssp EEEEE--------HHHHHHHH----EEEEEE--------HHHHHHHHHC---EEEEEE--TTSHHHHHHHHHHCHCSS--
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 89997997299999999999849999999789987767799999999967988998458878899999999998722687
Q ss_pred CEEEEECCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 138862354445653200-0123445443321122200000000110001121311331111046677606688899999
Q T0640 88 VDILVNAAAMFMDGSLSE-PVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALL 166 (250)
Q Consensus 88 iD~lv~nAG~~~~~~~~~-~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~ 166 (250)
|+.+||+||+..+.++.+ +.+++++++..-+.+...+.+.+.. .+-..+|+.||+++..+.+++..|+++.+.++
T Consensus 82 i~gViH~Ag~~~d~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~----~~l~~~v~fSSia~~~G~~Gq~~YaaANa~ld 157 (181)
T PF08659_consen 82 IDGVIHAAGVLRDAPIANQTAESFRAVLAPKVRGAWNLHEALRD----RPLDFFVLFSSIAALLGSPGQANYAAANAFLD 157 (181)
T ss_dssp --EEEE---------GGG--HHHHHHHCCCCC---HHHHHHHCC----TT-SEEEEEEECCHH--------HHHHHHHHH
T ss_pred EEEEEEECCCCCCCHHCCCCHHHHHHHHCCCCHHHHHHHHHHCC----CCCCEEEEECCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 14999951301333011499999999975234389999998257----99888999888267448976786799999999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 9999999998417968998568870
Q T0640 167 GLAESLYRELAPLGIRVTTLCPGWV 191 (250)
Q Consensus 167 ~l~~~la~e~~~~gIrvn~I~PG~v 191 (250)
.|++..+. .|.++.+|+-|..
T Consensus 158 ~~a~~r~~----~g~~~~sI~Wg~W 178 (181)
T PF08659_consen 158 ALARRRRA----RGLPALSIQWGAW 178 (181)
T ss_dssp HHHHHHHH---------EEEEE--B
T ss_pred HHHHHHHH----CCCCEEEEECCCC
T ss_conf 99999996----7999899986666
No 3
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions .; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 1eq2_F 2cnb_A 1gy8_C 2c20_B 3enk_A 1a9y_A 1lrk_A 1kvr_A 1lrj_A 1lrl_A ....
Probab=99.47 E-value=1.2e-12 Score=99.44 Aligned_cols=193 Identities=24% Similarity=0.296 Sum_probs=135.5
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99965985689999999986598699-99579899999999999842788742899724799899999999999962981
Q T0640 10 AIITGASQGIGAVIAAGLATDGYRVV-LIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAV 88 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~la~~G~~V~-i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 88 (250)
+|||||++-||+++++.|.++|+.|+ ...|+........... ++..+..|+.|++++.++++.. .+
T Consensus 1 IlI~Ga~G~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~d~~~~~~~~~~~~~~-----~~ 67 (238)
T PF01370_consen 1 ILITGATGFIGSALVRALLERGHEVIDALSRRESKASLCEERL--------NVEFIEGDLRDPDAIEDALKGA-----KP 67 (238)
T ss_dssp EEEE-----HHHHHHHHHHHHTSEEEEEESSSSTGGGHHHHHH--------TEEEEESETTSHHHHHHHHHHH-----TE
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE--------EEEEEEECCCCCCCHHHHCCCC-----CC
T ss_conf 8998368789999999999779864222212334444333212--------5898640112320101000134-----76
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHCCCCC------------CCH
Q ss_conf 38862354445653200012344544332112220000000011000112131133111104667------------760
Q T0640 89 DILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFA------------DGG 156 (250)
Q Consensus 89 D~lv~nAG~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~~~------------~~~ 156 (250)
|++||+|+... .....+.-+..++.|+.+...+ +..+++.+..++|++||. +.++.+ +..
T Consensus 68 d~vi~~a~~~~---~~~~~~~~~~~~~~n~~~~~~l----l~~~~~~~~~~~i~~sS~-~vy~~~~~~~i~E~~~~~p~~ 139 (238)
T PF01370_consen 68 DVVIHLAGPSG---VPKSSDDPEDTYESNVEGTRNL----LEAAREAGVKRFIFVSST-GVYGDPPGKPIDEDTPPNPLS 139 (238)
T ss_dssp SEEEEECSSHS---HHHHHHSHHHHHHHHTHHHHHH----HHHHHHHTTSEEEEEEEG-GGSSCCSSSSBETTSGCHHSS
T ss_pred CEEEECCCCCC---CCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
T ss_conf 26430134433---4543211122222222222222----111123575212221110-024764434322322122235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC---------HH----HHHHCCCCC----------CCCCCCHHH
Q ss_conf 6688899999999999999841796899856887067---------69----996402135----------344769899
Q T0640 157 IYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNT---------DM----AKKAGTPFK----------DEEMIQPDD 213 (250)
Q Consensus 157 ~Y~asKaal~~l~~~la~e~~~~gIrvn~I~PG~v~T---------~~----~~~~~~~~~----------~~~~~~p~~ 213 (250)
.|+.+|...+.+.+.++.+. ++++..+.|+.+-- .+ .+......+ ...+...+|
T Consensus 140 ~Y~~~K~~~e~~~~~~~~~~---~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D 216 (238)
T PF01370_consen 140 PYGQSKLAAEELLKDYAREY---GFRVTILRPGNVYGPGQPDSDDTGVIPAIIRRALAGKPPIPIPGDGEQRRDFIHVDD 216 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---TSEEEEEEESEEE-TTHCSTSTTSHHHHHHHHHHHTSSSEEEESCTTSEEEEEEHHH
T ss_pred CCCCCCCCCCCCCCCCCCCC---CEEEEEEECCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEHHH
T ss_conf 54222221100011122343---305888511203479843344453310112333320234112326776745689999
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999827976
Q T0640 214 LLNTIRCLLNLSE 226 (250)
Q Consensus 214 va~~v~~lls~~~ 226 (250)
+++++++++..+.
T Consensus 217 ~a~a~~~~~~~~~ 229 (238)
T PF01370_consen 217 VARAIVAALENPE 229 (238)
T ss_dssp HHHHHHHHHHSCH
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999983998
No 4
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus , the WalL protein, mannosyl-transferase , and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 2gn8_B 2gn4_A 2gn6_B 2gn9_A 2gna_B.
Probab=99.44 E-value=2.7e-13 Score=103.65 Aligned_cols=199 Identities=17% Similarity=0.148 Sum_probs=146.0
Q ss_pred EEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHCC-CCCCEEE----EECCCCCHHHHHHHHHHHHH
Q ss_conf 9996598568999999998659-8699995798999999999998427-8874289----97247998999999999999
Q T0640 10 AIITGASQGIGAVIAAGLATDG-YRVVLIARSKQNLEKVHDEIMRSNK-HVQEPIV----LPLDITDCTKADTEIKDIHQ 83 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~la~~G-~~V~i~~r~~~~l~~~~~~i~~~~~-~~~~~~~----~~~Dv~~~~~v~~~~~~~~~ 83 (250)
+|||||++-||.++++++++.+ .+|++.+||+.++-++..++..... ...++.+ +.+|++|.+.+.++++..
T Consensus 1 VLVTGa~GSIGsel~rql~~~~p~~lil~d~~E~~l~~l~~el~~~~~~~~~~~~~~~~~~lgdvrd~~~l~~~~~~~-- 78 (295)
T PF02719_consen 1 VLVTGAGGSIGSELCRQLLRFGPKKLILFDRDENKLYELEQELRLREKFPDPDLRFFIVPILGDVRDKERLERAFEEY-- 78 (295)
T ss_dssp EEEE--------HHHHHHHHHB-SEEEEE-S-HHHHHHHHHHC--------TTEEEE-------TT-HHHHHHHT-----
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--
T ss_conf 979557776999999999857957799926980899999999865102345565520122301225399999997415--
Q ss_pred HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHCCCCCCCHHHHHHHH
Q ss_conf 62981388623544456532000123445443321122200000000110001121311331111046677606688899
Q T0640 84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKF 163 (250)
Q Consensus 84 ~~g~iD~lv~nAG~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKa 163 (250)
++|+++|.|+.-..+..+. ...+.+.+|+.|+..+.+++... +-.++|++|+-=+. .+...|++||.
T Consensus 79 ---~~diVfHAAA~KHVpl~E~---np~eav~tNV~GT~nv~~aa~~~----~V~~fv~ISTDKAv---~PtnvmGatKr 145 (295)
T PF02719_consen 79 ---GPDIVFHAAALKHVPLMEY---NPFEAVKTNVLGTQNVADAAIEH----GVERFVFISTDKAV---NPTNVMGATKR 145 (295)
T ss_dssp ------EEEE------HHHHHH---SHHHHHHHHT---HHHHHHHHHT----T-SEEEEEEEGGGS---S--S----HHH
T ss_pred ---CCCEEEECHHHCCCHHHHH---CHHHHHHHHHHHHHHHHHHHHHC----CCCEEEEECCCCCC---CCCCHHHHHHH
T ss_conf ---9989998145258515663---99999999999999999999981----99989997777578---98518889899
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCC------HHHHH-HCCCCC-------C-CCCCCHHHHHHHHHHHHC
Q ss_conf 999999999999841796899856887067------69996-402135-------3-447698999999999827
Q T0640 164 ALLGLAESLYRELAPLGIRVTTLCPGWVNT------DMAKK-AGTPFK-------D-EEMIQPDDLLNTIRCLLN 223 (250)
Q Consensus 164 al~~l~~~la~e~~~~gIrvn~I~PG~v~T------~~~~~-~~~~~~-------~-~~~~~p~~va~~v~~lls 223 (250)
-.+.+.++.+...++.+.++.+|.-|-|-- |++.+ ....-| + .-+++.+|-++.|+....
T Consensus 146 ~aE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GSVip~F~~QI~~ggPvTvT~p~mtRffmTi~EAv~LVl~a~~ 220 (295)
T PF02719_consen 146 LAEKLIQAANQYSGKSKTRFSSVRFGNVLGSRGSVIPLFKKQIANGGPVTVTDPDMTRFFMTIPEAVQLVLQAGA 220 (295)
T ss_dssp HHHHHHHHGGG-------EEEEEEE--B------HHHHHHHHHHTTSSEEES-TT-EEE-B-S----HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 999999997311588885699997145225888649999999985998655999846899529999999999985
No 5
>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function. One of the proteins P32792 from SWISSPROT has been localised to the mitochondria .
Probab=99.42 E-value=3.6e-12 Score=96.24 Aligned_cols=182 Identities=17% Similarity=0.232 Sum_probs=141.1
Q ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 87789996598-56899999999865986999957989999999999984278874289972479989999999999996
Q T0640 6 QKGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK 84 (250)
Q Consensus 6 ~~kv~lVtGas-~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (250)
++.||+|.|.- .=|.+.+|..|-++|+-|+++..+.+.-+... ... ...+..+..|..++.++...+.+..+.
T Consensus 2 R~eVVvi~Gsp~ePltR~ia~DLeRRGFIV~vt~~~~~~~~~ve----~e~--~~dI~~L~ld~~~~~~~~~~l~~f~~~ 75 (299)
T PF08643_consen 2 RKEVVVIAGSPHEPLTRSIALDLERRGFIVYVTVSSAEEEKYVE----SED--RPDIRPLWLDDSDPSSIHASLREFNSL 75 (299)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCEEEEEEECCHHHHHHHH----HCC--CCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 60699997899984288887566417549999947778888876----136--667775302466764203799999997
Q ss_pred CC--------------CCEEEEECCC-CCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHC--CCCEEECCC-C
Q ss_conf 29--------------8138862354-445653200-012344544332112220000000011000--112131133-1
Q T0640 85 YG--------------AVDILVNAAA-MFMDGSLSE-PVDNFRKIMEINVIAQYGILKTVTEIMKVQ--KNGYIFNVA-S 145 (250)
Q Consensus 85 ~g--------------~iD~lv~nAG-~~~~~~~~~-~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~--~~G~Iv~is-S 145 (250)
+. ++-.+|.--. .+..++++. +.+.|...++.|+..++..+|.++|+++.+ ++.+||.++ |
T Consensus 76 l~~p~~p~~~~~ph~l~L~svI~vPsl~yp~GPie~i~~~sw~~~lnt~ll~~il~~q~lLPlL~~~~~~~~~II~~~Ps 155 (299)
T PF08643_consen 76 LSTPQVPFPGAPPHVLQLSSVIFVPSLSYPSGPIETISPSSWADELNTRLLTPILTLQALLPLLRSRSSQKSKIILFNPS 155 (299)
T ss_pred HCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 24767778899873168989998347768888713259999999988777889999999999877522688608998474
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 111046677606688899999999999999841796899856887067
Q T0640 146 RAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNT 193 (250)
Q Consensus 146 ~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~I~PG~v~T 193 (250)
+.+....|..++=.++..++.+|.++|++|+++++|.|..|..|.++-
T Consensus 156 I~ssl~~PfhspE~~~~~~l~~f~~~Lr~El~~~~I~V~~i~LGnl~l 203 (299)
T PF08643_consen 156 ISSSLSPPFHSPEAIVSSALSSFFESLRRELRPHNIDVTQIRLGNLDL 203 (299)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECC
T ss_conf 110358876578999999999999999998342687659997300303
No 6
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones.; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0006694 steroid biosynthetic process; PDB: 2q46_A 2q4b_B 1xq6_B 1ybm_B.
Probab=99.31 E-value=7.1e-13 Score=100.90 Aligned_cols=163 Identities=17% Similarity=0.176 Sum_probs=114.8
Q ss_pred EEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 996598568999999998659--869999579899999999999842788742899724799899999999999962981
Q T0640 11 IITGASQGIGAVIAAGLATDG--YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAV 88 (250)
Q Consensus 11 lVtGas~GiG~aia~~la~~G--~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 88 (250)
|||||++-||..++++|+++| ++|.+.+|+..... ...+.+.... . ++.+|++|++++.++++ .+
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~~~~~~~~~--~~~~~~~~~~--~--~~~gDl~d~~~l~~a~~-------g~ 67 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRNPPPKP--LKDLSKFGVE--E--FVEGDLTDPESLDEAME-------GV 67 (280)
T ss_dssp EEE--------HHHHHHH---T-S-EEE----SS--------------T--T-------TTSHHHHHHHH----------
T ss_pred CEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHH--HHHHCCCCCC--E--EEECCCCCHHHHHHHHC-------CC
T ss_conf 9885871999999999986999659997557888457--7874347974--7--99889989799999987-------99
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHCCC----CC-----------
Q ss_conf 388623544456532000123445443321122200000000110001121311331111046----67-----------
Q T0640 89 DILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYG----FA----------- 153 (250)
Q Consensus 89 D~lv~nAG~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~----~~----------- 153 (250)
|++||+|+...... ....+..+++|+.|+-.+.+++.. .+--++|++||.+...+ .+
T Consensus 68 d~ViH~As~~~~~~----~~~~~~~~~vnV~GT~nvl~A~~~----~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~ 139 (280)
T PF01073_consen 68 DVVIHTASPVDPWG----KDPREEFYKVNVEGTRNVLEAAKK----AGVKRLVYTSSVSVVFDNSRGDPIINGDEDWPYP 139 (280)
T ss_dssp -EEEE------EE-----------HHHHTT---HHHHHHHHH--------EEEE--------TT-GGGG-----------
T ss_pred CEEEEEEECCCCCC----CCHHHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf 99999601788656----566999999999999999999636----4997899979983756788999755652322122
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCH
Q ss_conf --7606688899999999999999841--7968998568870676
Q T0640 154 --DGGIYGSTKFALLGLAESLYRELAP--LGIRVTTLCPGWVNTD 194 (250)
Q Consensus 154 --~~~~Y~asKaal~~l~~~la~e~~~--~gIrvn~I~PG~v~T~ 194 (250)
....|+.||+.-+.++.....-..+ ..++..+|.|+.|--|
T Consensus 140 ~~~~~~Y~~sKa~AE~~v~~a~~~~~~~~~~l~t~~lRP~~I~Gp 184 (280)
T PF01073_consen 140 PNFVDPYAKSKALAEKAVLAANGSPLKNGGKLRTVALRPPGIFGP 184 (280)
T ss_dssp ---------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 222222222222222222222222222222222222222222222
No 7
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.
Probab=99.17 E-value=4.4e-10 Score=82.59 Aligned_cols=165 Identities=19% Similarity=0.272 Sum_probs=114.8
Q ss_pred EECCCCHHHHHHHHHHHHCCC--EEEEEECCH---HHHHHHHHHHHHHCC-------CCCCEEEEECCCCCHHH--HHHH
Q ss_conf 965985689999999986598--699995798---999999999998427-------88742899724799899--9999
Q T0640 12 ITGASQGIGAVIAAGLATDGY--RVVLIARSK---QNLEKVHDEIMRSNK-------HVQEPIVLPLDITDCTK--ADTE 77 (250)
Q Consensus 12 VtGas~GiG~aia~~la~~G~--~V~i~~r~~---~~l~~~~~~i~~~~~-------~~~~~~~~~~Dv~~~~~--v~~~ 77 (250)
+|||++-||..+..+|++.+. +|+.+.|.. +..+++.+.+.+.+. ...++.++.+|++++.- -...
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~v~cLvR~~~~~~a~~Rl~~~l~~~~~~~~~~~~~~~ki~~i~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRRGPNVKVYCLVRAKDDESARERLREALEEYGLFDPLLEEFSDKIEVIEGDLSKPNLGLSEED 80 (249)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCCCHHH
T ss_conf 90888789999999998278998899998899625289999999876033001112022518999567888566979899
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHCCCC-----
Q ss_conf 999999629813886235444565320001234454433211222000000001100011213113311110466-----
Q T0640 78 IKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGF----- 152 (250)
Q Consensus 78 ~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~~----- 152 (250)
++++. ..+|++||||+..... . .++.....|+.|+..+.+.+.. .+.-+++++|| +...+.
T Consensus 81 ~~~L~---~~vd~IiH~Aa~v~~~---~---~~~~~~~~Nv~gt~~ll~la~~----~~~~~~~~vST-a~~~~~~~~~~ 146 (249)
T PF07993_consen 81 YQELA---SEVDVIIHCAASVNFN---K---PYSSLRAPNVDGTRNLLRLALK----GRRKRFHYVST-AYVAGFRPGSI 146 (249)
T ss_pred HHHHH---HHHCEEEEEEEEEECC---C---CHHHHHHHHHHHHHHHHHHHHH----CCCCCEEEECC-EEEECCCCCCC
T ss_conf 99864---3108578757997102---6---7889999999999999999875----56871799666-78605677776
Q ss_pred ----------------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf ----------------77606688899999999999999841796899856887067
Q T0640 153 ----------------ADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNT 193 (250)
Q Consensus 153 ----------------~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~I~PG~v~T 193 (250)
.....|..||+.-+.+.+..+.+ .|+.+..+.||.|-.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~gY~~SK~~aE~ll~~a~~~---~gl~~~I~Rp~~i~g 200 (249)
T PF07993_consen 147 QEKIYSEEEDELDPPQSFPNGYAQSKWVAERLLRRAAQR---SGLPVTIVRPGIIVG 200 (249)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEEEE
T ss_conf 542111345565633468976999999999999999985---298599998878970
No 8
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 1n2s_A 1kbz_A 1kc1_A 1kc3_A 2ggs_A 1vl0_B.
Probab=99.02 E-value=2.8e-10 Score=83.88 Aligned_cols=173 Identities=24% Similarity=0.356 Sum_probs=119.1
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 99965985689999999986598699995798999999999998427887428997247998999999999999629813
Q T0640 10 AIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVD 89 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 89 (250)
++|||+++=||.++++.|.+.|+.|+.++|+ ++|++|++++++++++. +.|
T Consensus 3 ilI~Ga~G~lG~~l~~~l~~~~~~v~~~~r~------------------------~~d~~~~~~v~~~~~~~-----~pd 53 (286)
T PF04321_consen 3 ILITGASGQLGRALARALEKRGHEVIATSRS------------------------QLDLTDPEAVEKLLEDV-----KPD 53 (286)
T ss_dssp EEEE--------HHHHHCTTTSEEEEE-STT------------------------C--TTSHHHHHHHHHHH-------S
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEECCC------------------------CCCCCCHHHHHHHHHHC-----CCC
T ss_conf 9999999989999999864479889994676------------------------03798989999999962-----999
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHCCCC---C--------CCHHH
Q ss_conf 886235444565320001234454433211222000000001100011213113311110466---7--------76066
Q T0640 90 ILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGF---A--------DGGIY 158 (250)
Q Consensus 90 ~lv~nAG~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~~---~--------~~~~Y 158 (250)
++||+|+.......+. +-+..+.+|..++..+.+++.. .+.++|++||..-+-+. | +...|
T Consensus 54 ~VIn~Aa~t~~d~~e~---~~~~a~~vN~~~~~~la~~~~~-----~~~~li~iSTd~VFdG~~~~py~E~d~~~P~~~Y 125 (286)
T PF04321_consen 54 VVINCAAYTNVDACES---NPEEAYLVNVEAPKNLAEACKE-----HGARLIHISTDYVFDGTSGGPYDEDDEPNPLNVY 125 (286)
T ss_dssp EEEE------HHHHHH---SHHHHHHHHTHHHHHHHHHHTT-----T--EEEEEEEGGG-----SS-B-TTS----SS--
T ss_pred EEEECHHHCCHHHHHC---CHHHHHHHHHHHHHHHHHHHHH-----CCCEEEEECCEEEECCCCCCCCCCCCCCCCCCHH
T ss_conf 8995401136655531---8798998899999999999996-----5990999533047768889988899999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC----CCHHH----HHHC--CCC--CCCCC---CCHHHHHHHHHHHHC
Q ss_conf 888999999999999998417968998568870----67699----9640--213--53447---698999999999827
Q T0640 159 GSTKFALLGLAESLYRELAPLGIRVTTLCPGWV----NTDMA----KKAG--TPF--KDEEM---IQPDDLLNTIRCLLN 223 (250)
Q Consensus 159 ~asKaal~~l~~~la~e~~~~gIrvn~I~PG~v----~T~~~----~~~~--~~~--~~~~~---~~p~~va~~v~~lls 223 (250)
+-+|...+...+.. .+ +...+.++++ ...|. +... +.. ....+ ...+|+|+.+..++.
T Consensus 126 G~sK~~~E~~v~~~----~~---~~~IlR~~~v~g~~~~~f~~~~~~~~~~~~~~~~~~d~~~~pt~~~dlA~~i~~l~~ 198 (286)
T PF04321_consen 126 GRSKLEAEQAVLAA----NP---DALILRTSWVYGPGGRNFLTWLLRLLQQGEPLKVFDDQIRSPTHVDDLARAILALIE 198 (286)
T ss_dssp --TTT---HHHHHH-----S---SEEEEEE-SEES-----HHHHHHHHHHH-SEEEEESS-B---EEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CC---CEEEEECEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEHHHHHHHHHHHHH
T ss_conf 99999888999985----79---879995628708888879999998653298367668935686979999999999995
Q ss_pred CCC
Q ss_conf 976
Q T0640 224 LSE 226 (250)
Q Consensus 224 ~~~ 226 (250)
+..
T Consensus 199 ~~~ 201 (286)
T PF04321_consen 199 QPL 201 (286)
T ss_dssp HCH
T ss_pred CCC
T ss_conf 333
No 9
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi . This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; GO: 0016564 transcription repressor activity, 0006808 regulation of nitrogen utilization; PDB: 3ew7_A 1he5_A 1he3_A 1he4_A 1he2_A 1hdo_A 2gas_B 1qyd_A 2qys_B 3c3x_A ....
Probab=98.98 E-value=3.6e-09 Score=76.68 Aligned_cols=178 Identities=17% Similarity=0.205 Sum_probs=110.3
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 99965985689999999986598699995798999999999998427887428997247998999999999999629813
Q T0640 10 AIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVD 89 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 89 (250)
++|+||++.+|+.++++|++.|++|.+..|++++.. .+++... .+..+..|+.|++++.++++ .+|
T Consensus 1 I~V~GaTG~~G~~v~~~L~~~g~~V~~l~R~~~~~~--~~~l~~~-----g~~~v~~d~~d~~~l~~al~-------g~d 66 (233)
T PF05368_consen 1 ILVTGATGNVGRAVVRALLARGHEVRALVRNPSSAR--AQELRDQ-----GVEIVQGDLDDPDSLRAALQ-------GVD 66 (233)
T ss_dssp EEEES----HHHHHHHHHHHTGGEEEEEESSGHHHH--HHHHHHS-----GGEEEEHHTTTHHHHHHHHT-------T-S
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC--CCCCCCC-----CCEEEECCCCCHHHHHHHHC-------CCC
T ss_conf 989998867999999999838998489980353333--4101244-----31012123143788888751-------563
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHCC-CC---CCCHHHHHHHHHH
Q ss_conf 8862354445653200012344544332112220000000011000112131133111104-66---7760668889999
Q T0640 90 ILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKY-GF---ADGGIYGSTKFAL 165 (250)
Q Consensus 90 ~lv~nAG~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~-~~---~~~~~Y~asKaal 165 (250)
+++++.+... . ..++. ..|+ +...++.+--++|. +|..... .. .....|-.+|+.+
T Consensus 67 ~v~~~~~~~~----~---~~~~~--~~~l----------i~Aa~~agVk~~v~-ss~~~~~~~~~~~~~~~~~~~~k~~~ 126 (233)
T PF05368_consen 67 VVFSATGSRH----D---DEIDA--QKNL----------IDAAKEAGVKRFVP-SSFGNDDDISEGSFPSVPHFDAKAKI 126 (233)
T ss_dssp EEEEE--STT----H---HHCHH--HHHH----------HHHHHH---SEEEE-SECTTGTTTTTGSTTHHHHHHHHHHH
T ss_pred EEEEEECCCC----H---HHHHH--HHHH----------HHHHHHCCCCEEEE-EEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 0489715651----1---68887--6777----------89999839976987-77733654455567520133466777
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCC-------------CCCC---CCCC-CHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999984179689985688706769996402-------------1353---4476-9899999999982797642
Q T0640 166 LGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAGT-------------PFKD---EEMI-QPDDLLNTIRCLLNLSENV 228 (250)
Q Consensus 166 ~~l~~~la~e~~~~gIrvn~I~PG~v~T~~~~~~~~-------------~~~~---~~~~-~p~~va~~v~~lls~~~~~ 228 (250)
+.. +...|+..+.|.||+..-.+...... ..+. ..+. .++|+|+.+..++..|...
T Consensus 127 e~~-------l~~~~i~~tiir~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~p~~~ 199 (233)
T PF05368_consen 127 EEA-------LRESGIPYTIIRPGWFMENLLGPFAPVIDIKPGRGTFVIPGPGDTKIVFVISLEDVARAVAAILTDPETH 199 (233)
T ss_dssp HHH-------HHHTT-EEEEEEESEEGGGHHCCTCHCCCHSHHSSEEEEEESS-TEEEEEBHCCCHHHHHHHHHHBGGGT
T ss_pred HHH-------HHHCCCCCEEEECCCHHHCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 889-------9971898178741000320002343311225676179971478877345478999999999984681221
No 10
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). The saccharopine dehydrogenase can also function as a saccharopine reductase.; PDB: 2ph5_A 2axq_A 1e5l_B 1e5q_B 1ff9_A 2z2v_A.
Probab=98.39 E-value=3.8e-07 Score=63.38 Aligned_cols=76 Identities=25% Similarity=0.368 Sum_probs=62.4
Q ss_pred EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99965985689999999986598--6999957989999999999984278874289972479989999999999996298
Q T0640 10 AIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGA 87 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 87 (250)
++|.|+ +.+|+.+++.|++++. +|++.+||.++++++.+++ ...++..+++|+.|.++++++++ .
T Consensus 1 IlvlG~-G~vG~~v~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~l~~~~~-------~ 67 (386)
T PF03435_consen 1 ILVLGA-GFVGRAVARYLARRGDVSRVTVADRNPEKAEALAAEL-----GGPRIEFVQVDVSDPESLAALLK-------G 67 (386)
T ss_dssp EEEE-----THHHHHHHHHCCCCE-EEEEEESSHHHHHHHHC-------TTTTEEEEE--TTTHHHHHHHHT-------T
T ss_pred CEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHC-----CCCCCEEEEEECCCHHHHHHHHH-------C
T ss_conf 999968-3999999999983878753899989999999976420-----34551379985789899999985-------5
Q ss_pred CEEEEECCCCC
Q ss_conf 13886235444
Q T0640 88 VDILVNAAAMF 98 (250)
Q Consensus 88 iD~lv~nAG~~ 98 (250)
-|++||++|-.
T Consensus 68 ~dvVin~~gp~ 78 (386)
T PF03435_consen 68 CDVVINCAGPF 78 (386)
T ss_dssp SSEEEE-S-GG
T ss_pred CCEEEECCCCC
T ss_conf 99999906767
No 11
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry contains shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate , . This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids . Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate . ; GO: 0004764 shikimate 5-dehydrogenase activity, 0005737 cytoplasm; PDB: 1gpj_A 2d5c_A 2ev9_B 1wxd_A 2cy0_B 1nyt_A 1p74_A 1p77_A 2hk8_G 2hk9_B ....
Probab=97.73 E-value=9.6e-05 Score=47.68 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=57.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 558778999659856899999999865986-9999579899999999999842788742899724799899999999999
Q T0640 4 EKQKGLAIITGASQGIGAVIAAGLATDGYR-VVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
Q Consensus 4 ~~~~kv~lVtGas~GiG~aia~~la~~G~~-V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
++++|-++|.|+ +|.|++++..|++.|++ ++++.|+.++++++.+++ +. ..+.+.+ +.+.. ..
T Consensus 9 ~l~~k~vlviGa-Gg~a~~v~~~L~~~g~~~i~I~nRt~~ka~~la~~~---~~--~~~~~~~--~~~~~-------~~- 72 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKRITIVNRTPEKAEELAEEF---GG--KKIEVIP--LEDLE-------EL- 72 (135)
T ss_dssp TGTTSEEEEE------HHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHH---TC--CSEEEEE--EGGHH-------HC-
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHC---CC--CCCCEEE--HHHHH-------HH-
T ss_conf 857998999998-299999999999869998999949999999999973---54--6631333--87877-------33-
Q ss_pred HHCCCCEEEEECCCCCCC
Q ss_conf 962981388623544456
Q T0640 83 QKYGAVDILVNAAAMFMD 100 (250)
Q Consensus 83 ~~~g~iD~lv~nAG~~~~ 100 (250)
....|++||+.+....
T Consensus 73 --~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 73 --LQEADIVINATPAGMP 88 (135)
T ss_dssp --HHG-SEEEE-SSSSST
T ss_pred --CCCCCEEEECCCCCCC
T ss_conf --2799999989989965
No 12
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain . There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process; PDB: 3hdh_C 1f14_A 1il0_B 3had_B 1f0y_A 1lso_B 1f12_A 1f17_A 1lsj_B 1m76_A ....
Probab=97.01 E-value=0.0023 Score=38.69 Aligned_cols=45 Identities=38% Similarity=0.499 Sum_probs=38.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 78999659856899999999865986999957989999999999984
Q T0640 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRS 54 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~ 54 (250)
||++| |+ +-+|..+|..|+..|++|.+.+++.+.+++..+.+.+.
T Consensus 1 kV~Vi-Ga-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~a~~~i~~~ 45 (180)
T PF02737_consen 1 KVAVI-GA-GTMGRGIAALFARAGHEVVLYDPDPEALERARERIERN 45 (180)
T ss_dssp EEEEE---------HHHHHHHHT-SEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CEEEE-CC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 98999-56-88999999999837990899989999999999999999
No 13
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis . L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate . The enzyme participates in the citric acid cycle.; GO: 0016491 oxidoreductase activity, 0006100 tricarboxylic acid cycle intermediate metabolic process; PDB: 3fi9_A 4mdh_B 5mdh_B 3d5t_D 1b8p_A 1b8u_A 1b8v_A 1wze_A 2cvq_A 1bmd_A ....
Probab=96.75 E-value=0.0017 Score=39.45 Aligned_cols=115 Identities=22% Similarity=0.359 Sum_probs=74.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 7899965985689999999986598--69999579899999999999842788742899724799899999999999962
Q T0640 8 GLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY 85 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (250)
|+++| |+++.+|.++|..|+.+|. ++++.++++++++..+.++...............| +. +.+
T Consensus 2 KV~Ii-Gagg~VG~~~a~~l~~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~--~~-----------~~~ 67 (142)
T PF00056_consen 2 KVAII-GAGGNVGSALAYSLALKGIADELVLIDINEEKAKGEALDLSDASAFLNSNVIITGG--DY-----------EDL 67 (142)
T ss_dssp EEEEE------HHHHHHHHHHHTTTSSEEEEE-SSHHHHHHHHHHHHTHHTTSEEEEEEEST--HG-----------GGG
T ss_pred EEEEE-CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCEEECCC--CH-----------HHH
T ss_conf 89999-98789999999999718877669994488777560417888678746576563246--27-----------885
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCC-CCEEECCCC
Q ss_conf 981388623544456532000123445443321122200000000110001-121311331
Q T0640 86 GAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK-NGYIFNVAS 145 (250)
Q Consensus 86 g~iD~lv~nAG~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~-~G~Iv~isS 145 (250)
-.-|++|..||..+.+. .+..| .+..|. .+.+...+.+++.. .|.++.+|-
T Consensus 68 ~~adivvitaG~~~~~g-~~R~d----ll~~N~----~i~~~i~~~i~~~~~~~ivivvsN 119 (142)
T PF00056_consen 68 KDADIVVITAGVPRKPG-MSRLD----LLKANA----KIIKEIAKAIKKYAPKGIVIVVSN 119 (142)
T ss_dssp TTESEEEEE----S-TT-SCHHH----HHHHHH----HHHHHHHHHHHHHSTTSEEEEBSS
T ss_pred CCCCEEEEEECCCCCCC-CCHHH----HHHHHH----HHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 79988999503467899-87788----987749----999999999986499719999069
No 14
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC . This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 2gk4_A 1p9o_A 1u7w_C 1u80_A 1u7u_A 1u7z_C.
Probab=96.57 E-value=0.0015 Score=39.93 Aligned_cols=82 Identities=21% Similarity=0.178 Sum_probs=52.2
Q ss_pred CCCEEEEECC---------------C-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 8778999659---------------8-56899999999865986999957989999999999984278874289972479
Q T0640 6 QKGLAIITGA---------------S-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDIT 69 (250)
Q Consensus 6 ~~kv~lVtGa---------------s-~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~ 69 (250)
+||-+|||+| | +-+|.++|+++..+||.|++...+..-.. . .. ..... ..+.
T Consensus 2 ~gkkVLITaG~T~E~ID~VR~itN~SSGkmG~~iA~~~~~~Ga~V~li~g~~~~~p-------~-~~--~~~~~--i~v~ 69 (199)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGYAIAEEAYRRGADVTLIHGPVSLLP-------Q-PP--NGINV--IPVE 69 (199)
T ss_dssp -T-EEEEEE---EEESSSSEEEEES-------HHHHHHHH---EEEEEEETTS--T-------H-HT--TTEEE--EEES
T ss_pred CCCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-------C-CC--CCEEE--EEEE
T ss_conf 74299995488520457721556689569999999999864998999976885566-------8-76--78189--9998
Q ss_pred CHHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCC
Q ss_conf 989999999999996298--138862354445653
Q T0640 70 DCTKADTEIKDIHQKYGA--VDILVNAAAMFMDGS 102 (250)
Q Consensus 70 ~~~~v~~~~~~~~~~~g~--iD~lv~nAG~~~~~~ 102 (250)
..+ ++.+++.+.+.. -|++|.+|++....+
T Consensus 70 t~~---em~~~v~~~~~~~~~di~i~aAAVsDf~~ 101 (199)
T PF04127_consen 70 TAA---EMLEAVLEIIKQKKYDIIIMAAAVSDFRP 101 (199)
T ss_dssp SHH---HHHHHHHHHGGG---SEEEEES---SEEE
T ss_pred CHH---HHHHHHHHHHHCCCCCEEEEEEECCCEEC
T ss_conf 499---99999998643033489999749423641
No 15
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket . This family represents the NAD binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt; PDB: 1vpd_A 1yb4_A 1wp4_C 2cvz_C 2uyy_C 1pgj_B 2p4q_A 1pgp_A 1pgq_A 1pgo_A ....
Probab=96.33 E-value=0.003 Score=37.87 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=35.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Q ss_conf 77899965985689999999986598699995798999999999
Q T0640 7 KGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDE 50 (250)
Q Consensus 7 ~kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~ 50 (250)
+|+.+| |-+-+|.++|+.|+++|++|.+.+|+.++.+++.++
T Consensus 2 ~~Ig~I--GlG~MG~~~a~~L~~~g~~V~v~dr~~~~~~~~~~~ 43 (163)
T PF03446_consen 2 MKIGFI--GLGNMGSAMARNLARAGHEVTVYDRSPEKAEALAEE 43 (163)
T ss_dssp BEEEEB---------HHHHHHHH-CSEEEE--SSHHHHHHHHHH
T ss_pred CEEEEE--EHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf 889998--159989999999984599799990978899999973
No 16
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase . These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 3b3j_A 3b3f_C 3b3g_B 2v7e_A 2v74_F.
Probab=95.29 E-value=0.024 Score=31.98 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=51.2
Q ss_pred CCCEEEEECCCCHHHH-HHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 8778999659856899-9999998659--869999579899999999999842788742899724799899999999999
Q T0640 6 QKGLAIITGASQGIGA-VIAAGLATDG--YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
Q Consensus 6 ~~kv~lVtGas~GiG~-aia~~la~~G--~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
++|+|++.||++|+=- ..+++.++.| .+|+.+-.|......+...+.. .+-..++..+..|+.+.+--+
T Consensus 186 ~~~vVldVGaGrGpL~~~a~~A~a~~~~a~kVyAVEkN~~A~~~l~~~V~~-n~w~~~VtVI~gdmre~~lpe------- 257 (447)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGRAVKVYAVEKNPNAIVTLQKRVNK-NGWGDKVTVINGDMREWELPE------- 257 (447)
T ss_dssp TT-EEEEE------HHHHHHH---------EEEEE-SSTHHHHH-HHHHHH-TT-TTTEEEE---TTTS--SS-------
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH-CCCCCEEEEECCCHHHCCCCC-------
T ss_conf 984999989976599999998615235425999987998789999999986-179987999909575389998-------
Q ss_pred HHCCCCEEEEE
Q ss_conf 96298138862
Q T0640 83 QKYGAVDILVN 93 (250)
Q Consensus 83 ~~~g~iD~lv~ 93 (250)
++|++|.
T Consensus 258 ----kvDIIVS 264 (447)
T PF05185_consen 258 ----KVDIIVS 264 (447)
T ss_dssp -----BSEEEE
T ss_pred ----CEEEEEE
T ss_conf ----6569998
No 17
>PF12076 Wax2_C: WAX2 C-terminal domain
Probab=94.70 E-value=0.021 Score=32.34 Aligned_cols=42 Identities=31% Similarity=0.521 Sum_probs=35.1
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 99965985689999999986598699995798999999999998
Q T0640 10 AIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMR 53 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~ 53 (250)
|+.||+.+-+|++||..|.++|.+|+.+ +.++-+.+..++..
T Consensus 1 V~l~G~~sKvaraiAlaLC~rgiqV~m~--~~e~y~~i~~~~~~ 42 (164)
T PF12076_consen 1 VFLTGATSKVARAIALALCQRGIQVLML--SKERYEKIKREAPE 42 (164)
T ss_pred CEECCCCCHHHHHHHHHHHHCCCEEEEE--CHHHHHHHHHHCCH
T ss_conf 9632661089999999997579989994--68999999986088
No 18
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) , activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1jwa_B 1jwb_B 1jw9_B 1zfn_A 1zud_1 1zkm_A 3h9g_A 3h9q_C 3h5r_C 3h5n_C ....
Probab=94.53 E-value=0.13 Score=27.28 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=43.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 877899965985689999999986598-6999957989999999999984278874289972479989999999999996
Q T0640 6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK 84 (250)
Q Consensus 6 ~~kv~lVtGas~GiG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (250)
+.|+++| |.+|+|.++++.|+..|. ++.+.+.+.=.... ... .+.+-+.|+...+ ++.+.+.+.+-
T Consensus 2 ~~~v~ii--G~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~N-------l~r---q~~~~~~diG~~K-a~~~~~~l~~~ 68 (135)
T PF00899_consen 2 KSKVLII--GAGGLGSEIAKNLARSGVGEITIVDDDIVEESN-------LNR---QFLFNEEDIGKNK-AEALAERLKRI 68 (135)
T ss_dssp T-EEEEE--S-S----HHHHHHHH----EEEEEESSB--GGG-------GGT----TTS-GGGTTSBH-HHHHHHHHHHH
T ss_pred CCEEEEE--CCCHHHHHHHHHHHHCCCCCEEEECCEEEEEEC-------CCC---CCCCCHHHCCCCC-HHHHHHHHHHH
T ss_conf 8889998--878899999999998097636852890887755-------776---5468745538653-78988878875
Q ss_pred CCCCEEEEE
Q ss_conf 298138862
Q T0640 85 YGAVDILVN 93 (250)
Q Consensus 85 ~g~iD~lv~ 93 (250)
.+.+++-..
T Consensus 69 np~~~i~~~ 77 (135)
T PF00899_consen 69 NPDVKIEAI 77 (135)
T ss_dssp STTSEEEEE
T ss_pred CCCEEEEEE
T ss_conf 076289999
No 19
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels). , , . Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases . Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding , but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved , , . It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilizes the RCK homodimer , , . Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue , , . RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 2hmv_A 2hmu_B 2hmt_A 2hms_D 2hmw_A 1lsu_A 3c85_A 3fwz_B 3eyw_A 1id1_A ....
Probab=94.49 E-value=0.098 Score=27.99 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=47.0
Q ss_pred EEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99965985689999999986598-69999579899999999999842788742899724799899999999999962981
Q T0640 10 AIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAV 88 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 88 (250)
++|.|. +.+|+.+++.|.+ +. +|++.+.+++..+++.. .+ +.++..|.++++..+++ .....
T Consensus 1 ivI~G~-g~~~~~i~~~L~~-~~~~vviv~~~~~~~~~~~~----~~-----~~~i~gd~~~~~~l~~~------~i~~a 63 (116)
T PF02254_consen 1 IVICGY-GRVGREIARELRE-GGIPVVIVDKDPERIEELRE----EG-----VPVIYGDATDEEVLEEA------GIEEA 63 (116)
T ss_dssp EEEE----HHHHHHHHHHHH-TCEEEEEEESSHHHHHHHHH----HS-----SEEEE--TTSHHHHHHT------TGTTE
T ss_pred EEEECC-CHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHC----CC-----CEEEEECCCCHHHHHHC------CCCCC
T ss_conf 299878-8899999999985-89989999888899998650----68-----34899426662249876------98867
Q ss_pred EEEEE
Q ss_conf 38862
Q T0640 89 DILVN 93 (250)
Q Consensus 89 D~lv~ 93 (250)
+.+|-
T Consensus 64 ~~vii 68 (116)
T PF02254_consen 64 DAVII 68 (116)
T ss_dssp SEEEE
T ss_pred CEEEE
T ss_conf 77999
No 20
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain . ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0005737 cytoplasm; PDB: 1z82_A 1m67_A 1evz_A 1evy_A 1n1g_A 1m66_A 1n1e_A 1jdj_A 3c7d_B 3c7c_B ....
Probab=94.33 E-value=0.023 Score=32.15 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=33.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Q ss_conf 7789996598568999999998659869999579899999999
Q T0640 7 KGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHD 49 (250)
Q Consensus 7 ~kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~ 49 (250)
+||++| |++..|.|+|..|+.+|++|.+++|+.+.++++.+
T Consensus 1 mkI~Vi--GaG~~GtAlA~~la~~g~~V~lw~r~~~~~~~i~~ 41 (159)
T PF01210_consen 1 MKIAVI--GAGSWGTALAALLADNGHEVTLWGRDEEVVEEINE 41 (159)
T ss_dssp EEEEEE------HHCHHHHHHHHTCEEEEEETSSHHHHHHHHH
T ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 959998--96999999999999779989999488899999997
No 21
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's , are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin . The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C-terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) , , .; PDB: 1vj0_B 2eih_A 1y9e_A 1tt7_D 1o8c_A 1o89_A 1qor_A 1wly_A 1iyz_A 1iz0_A ....
Probab=94.26 E-value=0.13 Score=27.15 Aligned_cols=66 Identities=21% Similarity=0.382 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC--CCEEEEECC
Q ss_conf 689999999986598699995798999999999998427887428997247998999999999999629--813886235
Q T0640 18 GIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYG--AVDILVNAA 95 (250)
Q Consensus 18 GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g--~iD~lv~nA 95 (250)
|||....+-....|++|+.+++++++++.+. +.+. +. + .|..+.+ +.+++.+..+ .+|+++.+.
T Consensus 1 gvG~~aiq~a~~~G~~vi~~~~~~~k~~~a~----~~Ga---~~-v--i~~~~~~----~~~~~~~~~~~~g~d~vid~~ 66 (130)
T PF00107_consen 1 GVGLAAIQLAKAMGARVIATDRSEEKLELAK----KLGA---DE-V--IDYKDED----LVEQLREITGGQGADVVIDCV 66 (130)
T ss_dssp --HHHHHHHHHHHTEEEEEEESSHHHHHHHH----HC-C---CE-E--EETTTSS----HHHHHHHHTTT--BSEEEESS
T ss_pred CHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HCCC---CE-E--EEECCCC----CCCCCCCCCCCCCCEEEEECC
T ss_conf 9779999999986998999989999999998----4578---68-9--9740211----111111122356744999988
Q ss_pred CC
Q ss_conf 44
Q T0640 96 AM 97 (250)
Q Consensus 96 G~ 97 (250)
|.
T Consensus 67 g~ 68 (130)
T PF00107_consen 67 GS 68 (130)
T ss_dssp SS
T ss_pred CC
T ss_conf 86
No 22
>PF12241 Enoyl_reductase: Trans-2-enoyl-CoA reductase catalytic region
Probab=93.36 E-value=0.21 Score=25.85 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=85.2
Q ss_pred HHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-------------CCCHH---------
Q ss_conf 99998427887428997247998999999999999629813886235444565-------------32000---------
Q T0640 49 DEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDG-------------SLSEP--------- 106 (250)
Q Consensus 49 ~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAG~~~~~-------------~~~~~--------- 106 (250)
++..+.+. .+..+..|.-+++--++.++.+.++||.||.+|++-+-..+. ++.++
T Consensus 16 ~~A~~~Gl---~aksingDAFS~e~k~~vI~~Ik~~~G~VDLvvYSLAap~R~~p~tGe~~~S~LKpiG~~~t~~t~d~~ 92 (237)
T PF12241_consen 16 KAAKAAGL---YAKSINGDAFSDEIKAQVIDLIKEDFGQVDLVVYSLAAPRRTDPETGETYRSVLKPIGEPVTGKTLDTD 92 (237)
T ss_pred HHHHHCCC---EEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECC
T ss_conf 99997699---547514401787999999999999708755899842577778999888875432147765125722057
Q ss_pred -------------HHHHHHHHHHHHHHH---HHCCCCCHHHHHHCCCCEEECCCCHHHCCCCCCC--HHHHHHHHHHHHH
Q ss_conf -------------123445443321122---2000000001100011213113311110466776--0668889999999
Q T0640 107 -------------VDNFRKIMEINVIAQ---YGILKTVTEIMKVQKNGYIFNVASRAAKYGFADG--GIYGSTKFALLGL 168 (250)
Q Consensus 107 -------------~e~~~~~~~vNl~~~---~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~~~~~--~~Y~asKaal~~l 168 (250)
.|+++.+ +-++|- -...+++...=.-..+.+-|..|.+.....+|-| +.-+.+|.-|+.-
T Consensus 93 ~~~i~~~tiepAt~eEi~~T--vkVMGGeDWe~Wi~aL~~AgvLaeg~kTvAySYiG~~~T~pIY~~GtiG~AK~dL~~t 170 (237)
T PF12241_consen 93 KDEIVEVTIEPATEEEIENT--VKVMGGEDWELWIDALKEAGVLAEGAKTVAYSYIGPELTWPIYRDGTIGAAKKDLEAT 170 (237)
T ss_pred CCEEEEEEECCCCHHHHHHH--HHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHH
T ss_conf 88488875458998999856--2264866899999999877875689879998436864443656267288999999999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf 99999998417968998568870676
Q T0640 169 AESLYRELAPLGIRVTTLCPGWVNTD 194 (250)
Q Consensus 169 ~~~la~e~~~~gIrvn~I~PG~v~T~ 194 (250)
++.+..+|+..|.+.+......+-|.
T Consensus 171 a~~i~~~l~~~~g~A~vsv~kAlVTq 196 (237)
T PF12241_consen 171 AHAINEKLAAIGGRAYVSVNKALVTQ 196 (237)
T ss_pred HHHHHHHHHHCCCEEEEEEEHHHEEH
T ss_conf 99999999864982899971130111
No 23
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0006118 electron transport; PDB: 3gt0_A 2ahr_E 2amf_A 2ag8_A 1yqg_A 2izz_B 2ger_E 2gr9_A 2gra_D 2rcy_C ....
Probab=93.30 E-value=0.054 Score=29.65 Aligned_cols=42 Identities=26% Similarity=0.559 Sum_probs=35.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEE-ECCHHHHHHHHHHH
Q ss_conf 789996598568999999998659---869999-57989999999999
Q T0640 8 GLAIITGASQGIGAVIAAGLATDG---YRVVLI-ARSKQNLEKVHDEI 51 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G---~~V~i~-~r~~~~l~~~~~~i 51 (250)
|+.+| |++-+|.++++.|++.| .+|++. .|++++.+++.++.
T Consensus 1 kIgiI--G~G~mg~al~~gl~~~~~~~~~i~i~~~~~~~~~~~l~~~~ 46 (96)
T PF03807_consen 1 KIGII--GAGNMGSALAKGLLESGFQPEEIIIVNSRSPEKAEELAKEY 46 (96)
T ss_dssp EEEEB------HHHHHHHHHTTTTS-GGEEEEEE-SSHHHHHHHHHHC
T ss_pred CEEEE--CCHHHHHHHHHHHHHCCCCHHHEEECCCCCHHHHHHHHHHH
T ss_conf 99999--95299999999999869987886622589979999999984
No 24
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR000672 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (), methenyl-THF cyclohydrolase () and formyl-THF synthetase () , . The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase ; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein , . Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site , and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds.; GO: 0003824 catalytic activity, 0009396 folic acid and derivative biosynthetic process; PDB: 1dig_B 1a4i_B 1dib_B 1dia_B 2c2y_A 2c2x_A 1ee9_A 1edz_A 1b0a_A.
Probab=92.72 E-value=0.042 Score=30.37 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=37.6
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Q ss_conf 55587789996598568999999998659869999579899999
Q T0640 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEK 46 (250)
Q Consensus 3 ~~~~~kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~ 46 (250)
.++++|.++|.|.|.=+|+-++.-|.++|++|.++.++.+.+++
T Consensus 32 i~l~Gk~vvVvGrS~~VG~Pla~lL~~~~atVt~~hs~T~~l~~ 75 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKNATVTVCHSKTKNLKE 75 (160)
T ss_dssp -ST---EEEEE---ST---HHHHHHHCTT-EEEEE-SS-SSHHH
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHH
T ss_conf 99789999998997334899999998789989983789974756
No 25
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding; PDB: 1gdh_B 1wwk_B 2dbr_B 2dbz_B 2dbq_A 2cuk_C 1yba_A 2p9c_B 2p9e_B 2p9g_A ....
Probab=92.42 E-value=0.11 Score=27.74 Aligned_cols=42 Identities=26% Similarity=0.199 Sum_probs=35.1
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Q ss_conf 5558778999659856899999999865986999957989999
Q T0640 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLE 45 (250)
Q Consensus 3 ~~~~~kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~ 45 (250)
.++.+|++.|. |.+.||+++|+.|..-|++|+..+|+.....
T Consensus 32 ~~l~gktvgIv-G~G~IG~~vA~~l~afG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 32 RELRGKTVGIV-GLGRIGRAVARRLKAFGMKVIGYDRSPKPEE 73 (178)
T ss_dssp S-GGGSEEEEB--------HHHHHHHHGT-EEEEECSSSHHHH
T ss_pred CCCCCCEEEEE-EECCCHHHHHHHHCCCCCEEEEECCCCCHHH
T ss_conf 46789989998-4780289998764139988999827777566
No 26
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase
Probab=92.28 E-value=0.054 Score=29.66 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=23.8
Q ss_pred CC-CEEEEECCCCHHHHH--HHHHHHHCCCEEEEEEC
Q ss_conf 87-789996598568999--99999865986999957
Q T0640 6 QK-GLAIITGASQGIGAV--IAAGLATDGYRVVLIAR 39 (250)
Q Consensus 6 ~~-kv~lVtGas~GiG~a--ia~~la~~G~~V~i~~r 39 (250)
++ |.|||.|+|+|.|.| |+.+| ..|+..+.+..
T Consensus 37 ~GpK~VLViGaSsGyGLAsRI~~AF-g~gA~TiGV~f 72 (78)
T PF12242_consen 37 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTIGVSF 72 (78)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHH-CCCCCEEEEEE
T ss_conf 8984699984687400999999985-37987588871
No 27
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate , . The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin , which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation . In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence . GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyzes the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response , while in A. vinelandii it is essential for the encystment process . This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold , .; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006118 electron transport; PDB: 2q3e_L 2qg4_F 2o3j_A 3g79_A 1mfz_B 1muu_B 1mv8_D 1dli_A 1dlj_A 3gg2_A ....
Probab=91.92 E-value=0.095 Score=28.07 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=34.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Q ss_conf 778999659856899999999865986999957989999999
Q T0640 7 KGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVH 48 (250)
Q Consensus 7 ~kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~ 48 (250)
+||++| |.+-+|.-.|..|++.|++|+..+.|+++.+.+.
T Consensus 1 mkI~Vi--G~GyvGl~~A~~lA~~G~~Vig~D~d~~~v~~l~ 40 (185)
T PF03721_consen 1 MKIAVI--GLGYVGLPLAACLAEAGHNVIGVDIDEEKVEALN 40 (185)
T ss_dssp -EEEEE---------HHHHHHHHHTSEEEEE-S-HHHHHHHC
T ss_pred CEEEEE--CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 989998--9567689999999958997999989889999987
No 28
>PF10727 Rossmann-like: Rossmann-like domain; PDB: 3dfu_A 3c24_B.
Probab=91.91 E-value=0.034 Score=30.98 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=55.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHHHHHHCCC-----CCCEEEEECCCCCHHHHHHHHH
Q ss_conf 87789996598568999999998659869999-57989999999999984278-----8742899724799899999999
Q T0640 6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLI-ARSKQNLEKVHDEIMRSNKH-----VQEPIVLPLDITDCTKADTEIK 79 (250)
Q Consensus 6 ~~kv~lVtGas~GiG~aia~~la~~G~~V~i~-~r~~~~l~~~~~~i~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~ 79 (250)
+-|+.+| |+ +-.|.++++.|.+.|+.|..+ +|+.+..+++...+...... ..+...+-+-+.| +.+..+.+
T Consensus 10 rl~IgiI-Ga-GrVG~~La~~l~~aG~~v~~v~srs~~sa~~aa~~~~~~~~~~~~e~~~~aDlv~IavpD-d~I~~v~~ 86 (127)
T PF10727_consen 10 RLRIGII-GA-GRVGTALARALARAGHPVVGVYSRSPASAERAAAFLPGVPVLDPEEVLRRADLVFIAVPD-DAIAEVAE 86 (127)
T ss_dssp --EEEEE-E------SHHHHHHHHSSSEEEE-SSCGG---TTT---------------CCC-SEEEE-S-C-HHHHHHHH
T ss_pred CCEEEEE-CC-CHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-HHHHHHHH
T ss_conf 6369998-88-989999999999789969999966843222111111111110001455638899998160-77899999
Q ss_pred HHHHH--CCCCEEEEECCCCCCCC
Q ss_conf 99996--29813886235444565
Q T0640 80 DIHQK--YGAVDILVNAAAMFMDG 101 (250)
Q Consensus 80 ~~~~~--~g~iD~lv~nAG~~~~~ 101 (250)
.+.+. +-+=.+++|+.|-..-.
T Consensus 87 ~La~~~~~~~GqiV~HtSGa~~~~ 110 (127)
T PF10727_consen 87 QLAAAGAWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp HHHCC--S----EEEES-S----G
T ss_pred HHHHHCCCCCCCEEEECCCCCCCH
T ss_conf 998750578886899857997304
No 29
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyze the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate , . GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids . Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyzes the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues . Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle.; GO: 0016491 oxidoreductase activity, 0006520 amino acid metabolic process; PDB: 2bma_F 1b3b_B 1b26_C 2tmg_B 1bvu_F 1gtm_A 1euz_A 1nr1_E 1l1f_A 1nqt_C ....
Probab=91.90 E-value=0.13 Score=27.21 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=28.7
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 5587789996598568999999998659869999
Q T0640 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLI 37 (250)
Q Consensus 4 ~~~~kv~lVtGas~GiG~aia~~la~~G~~V~i~ 37 (250)
+++++.++| .|.+.+|+..|+.|.+.|++|+.+
T Consensus 29 ~l~g~~vai-qG~GnVG~~~a~~l~~~Gakvv~v 61 (244)
T PF00208_consen 29 SLKGKRVAI-QGFGNVGSNAARKLAELGAKVVAV 61 (244)
T ss_dssp -CCC-EEEE-E----HHHHHHHHHHHCT-EEEEE
T ss_pred CCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 446988999-897789999999999879989999
No 30
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The C-terminal region of yjeF from Escherichia coli shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Saccharomyces cerevisiae YKL151C and Bacillus subtilis yxkO match the yjeF C-terminal domain but lack this region. The proteins in this group are of unknown function.; PDB: 3d3k_B 3d3j_A 2dg2_F 2o8n_A 1jzt_A 2ax3_A.
Probab=91.17 E-value=0.18 Score=26.23 Aligned_cols=33 Identities=33% Similarity=0.549 Sum_probs=27.1
Q ss_pred CCCCEEEEECCC--CHHHHHHHHHHHHCCCEEEEE
Q ss_conf 587789996598--568999999998659869999
Q T0640 5 KQKGLAIITGAS--QGIGAVIAAGLATDGYRVVLI 37 (250)
Q Consensus 5 ~~~kv~lVtGas--~GiG~aia~~la~~G~~V~i~ 37 (250)
..++|+++.|.+ +|=|+++|+.|+++|++|.+.
T Consensus 28 ~~~~v~vl~G~GNNGGDglv~AR~L~~~G~~V~v~ 62 (173)
T PF03853_consen 28 KPPRVLVLCGPGNNGGDGLVAARHLAQRGYKVTVF 62 (173)
T ss_dssp TT-EEEEEE----------HHHHHHHHTTSEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 79979999899987699999999999879933999
No 31
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; PDB: 3gvp_D 1v8b_D 3ce6_A 2zj0_D 2zj1_C 2ziz_A 3dhy_B 1ky5_A 2h5l_A 1xwf_C ....
Probab=88.38 E-value=0.28 Score=24.95 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=34.8
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Q ss_conf 5558778999659856899999999865986999957989999
Q T0640 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLE 45 (250)
Q Consensus 3 ~~~~~kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~ 45 (250)
+.+.+|.++|.|- +-+|+.+|++|...|++|+++..|+-+.-
T Consensus 19 ~~laGk~vvV~GY-G~~GkGvA~~lrg~Ga~V~VtEvDPi~al 60 (162)
T PF00670_consen 19 VLLAGKNVVVIGY-GWCGKGVAQRLRGLGARVIVTEVDPIRAL 60 (162)
T ss_dssp ------EEEEE----------HHHHHH---EEEEE-SSHHHHH
T ss_pred CCCCCCEEEEECC-CCCCHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 7758878999778-73359999999739398999979989999
No 32
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic . ; PDB: 2ew2_A 3ego_A 2ofp_B 1yjq_A 1ks9_A 1yon_A 3g17_F 3hn2_D 2qyt_A 3ghy_A ....
Probab=87.58 E-value=0.5 Score=23.35 Aligned_cols=69 Identities=30% Similarity=0.436 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9856899999999865986999957989999999999984-278874289972479989999999999996298138862
Q T0640 15 ASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRS-NKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVN 93 (250)
Q Consensus 15 as~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~ 93 (250)
|.+.||.-+|..|++.|+.|.+..|+. +++.+.+.--.. ..........+.+..++ .+..++.|.+|.
T Consensus 5 GaGaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~viv 73 (151)
T PF02558_consen 5 GAGAIGSLYAARLAKAGHDVTLLARSP-RLEAIKENGLTIKSDDGDEIVRPPIVISDP----------AEDDGPFDLVIV 73 (151)
T ss_dssp -------HHHHHHHHCCCEEEEE-SCH-HHHHHHHEEEEEEESSEEEEECEEEECSSC-----------TTCCTESEEEE
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEEECC-HHHHHHHCEEEEEECCCCEEECCCCCCCCC----------CCCCCCCCEEEE
T ss_conf 969999999999997899089999372-888761236899968981884353001662----------012589889999
Q ss_pred C
Q ss_conf 3
Q T0640 94 A 94 (250)
Q Consensus 94 n 94 (250)
+
T Consensus 74 ~ 74 (151)
T PF02558_consen 74 A 74 (151)
T ss_dssp -
T ss_pred E
T ss_conf 9
No 33
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase (1.3.1.26 from EC) catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate; PDB: 1vm6_B 3dap_B 1f06_A 2dap_A 1dap_A 1yl7_B 1yl5_B 1p9l_B 1c3v_B 1yl6_A ....
Probab=84.04 E-value=0.63 Score=22.69 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=50.6
Q ss_pred EEEECCCCHHHHHHHHHHHH-CCCEEEEE-ECCHH-HHHHHH--------------HHHHHHCCCCCCEEEEECCCCCHH
Q ss_conf 99965985689999999986-59869999-57989-999999--------------999984278874289972479989
Q T0640 10 AIITGASQGIGAVIAAGLAT-DGYRVVLI-ARSKQ-NLEKVH--------------DEIMRSNKHVQEPIVLPLDITDCT 72 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~la~-~G~~V~i~-~r~~~-~l~~~~--------------~~i~~~~~~~~~~~~~~~Dv~~~~ 72 (250)
++|.|+++-+|+++++.+.+ .+..++.. +|+.+ ...+-. +.+...-.. . =+-.|.+.++
T Consensus 3 V~v~G~~GrMG~~i~~~i~~~~~~elv~~~~~~~~~~~g~d~g~~~g~~~~~v~v~~dl~~~~~~---~-DVvIDFT~p~ 78 (124)
T PF01113_consen 3 VAVIGASGRMGRAIAKAILESPDFELVGAVDRSPSPLVGKDIGELLGLGPLGVPVTDDLEEVLEE---A-DVVIDFTHPE 78 (124)
T ss_dssp EEEB--------HHHHHHHHSTTCEE-EEEESSS-TT---B------------BEBS-HCHHCCS-----SEEEB-S-HH
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHCCC---C-EEEEECCCHH
T ss_conf 99999999799999999975899799999906985324643677608787544565899895065---6-0999899878
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9999999999962981388623544
Q T0640 73 KADTEIKDIHQKYGAVDILVNAAAM 97 (250)
Q Consensus 73 ~v~~~~~~~~~~~g~iD~lv~nAG~ 97 (250)
.+...++...+. ++-+++-..|.
T Consensus 79 ~~~~~~~~~~~~--g~~~ViGTTG~ 101 (124)
T PF01113_consen 79 AVLDNLKAAAKH--GVPLVIGTTGF 101 (124)
T ss_dssp HHHHHHHHHHHH--T-EEEE---S-
T ss_pred HHHHHHHHHHHC--CCCEEEECCCC
T ss_conf 999999999978--99999989999
No 34
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR013027 from INTERPRO. It is found in both class I and class II oxidoreductases. FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase , , . Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently . Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) . Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase , thioredoxin reductase , mercuric reductase , lipoamide dehydrogenase , trypanothione reductase and NADH peroxidase have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication . ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding; PDB: 2v3a_A 2v3b_A 2yvj_A 2gr0_A 2gr2_A 2gqw_A 2yvf_A 2gr1_A 1f3p_A 1d7y_A ....
Probab=83.86 E-value=0.54 Score=23.13 Aligned_cols=61 Identities=30% Similarity=0.290 Sum_probs=40.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 78999659856899999999865986999957989999999999984278874289972479989999999999996298
Q T0640 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGA 87 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 87 (250)
|+++| |++-+|-++|..|++.|.+|.+..|+..- ....+++-.+.+.+.+ ++. +
T Consensus 1 ~vvVi--GgG~~g~E~A~~l~~~g~~Vtlv~~~~~~----------------------~~~~~~~~~~~~~~~l-~~~-g 54 (81)
T PF00070_consen 1 RVVVI--GGGYIGLELAEELARLGKEVTLVERSDRL----------------------LPGLDPEIAKYLQDKL-EEN-G 54 (81)
T ss_dssp EEEEE---E-HHHHHHHHHHHHTSSEEEEEESSSSS----------------------STTSSHHHHHHHHHHH-HHT-T
T ss_pred CEEEE--CCCHHHHHHHHHHHHHCCEEEEEEECCCH----------------------HHHCCHHHHHHHHHHH-HHC-C
T ss_conf 99999--96999999999998639889999977831----------------------3408999999999999-978-9
Q ss_pred CEEEEEC
Q ss_conf 1388623
Q T0640 88 VDILVNA 94 (250)
Q Consensus 88 iD~lv~n 94 (250)
+++..+.
T Consensus 55 V~~~~~~ 61 (81)
T PF00070_consen 55 VEIHTNA 61 (81)
T ss_dssp EEEEESE
T ss_pred CEEEECC
T ss_conf 9999399
No 35
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases () and pyridine nucleotide transhydrogenase () have been shown to share regions of similarity . Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP^+ to NADPH with the concomitant oxidation of NADH to NAD^+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport; PDB: 2vhx_F 2vhz_B 2voe_F 2vhw_B 2vhy_B 2voj_A 2vhv_B 1pjb_A 1say_A 1pjc_A ....
Probab=82.26 E-value=1.2 Score=20.82 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=47.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC---------------HH
Q ss_conf 789996598568999999998659869999579899999999999842788742899724799---------------89
Q T0640 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD---------------CT 72 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~---------------~~ 72 (250)
..++|+| ++-.|...++-+...|++|+..+.+.+.+++... ... . .+..|..+ ++
T Consensus 21 akvvViG-aG~vG~~A~~~a~~LGa~v~~~D~~~~~~~~~~~----~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 21 AKVVVIG-AGVVGLGAAETAKGLGAEVVVPDVRPERLEQVES----LGA---K--FVDTDYEEDEEREDYAKEEFYEFPE 90 (168)
T ss_dssp -EEEEE--------HHHHHHHH---EEEEEESSHHHHHHHHH----HTT---E--ECEETTTTTTTSB--CHHHSHHHEE
T ss_pred EEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHC----CCC---C--EEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 6999979-8789999999998779979970379899976423----468---5--5785630134444533332366762
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 99999999999629813886235444565
Q T0640 73 KADTEIKDIHQKYGAVDILVNAAAMFMDG 101 (250)
Q Consensus 73 ~v~~~~~~~~~~~g~iD~lv~nAG~~~~~ 101 (250)
+-+..|.+... .-|++|+|+-++...
T Consensus 91 ~~~~~~~~~i~---~~DivI~~~~~~g~~ 116 (168)
T PF01262_consen 91 SYESNFAEFIA---EADIVIGAALIPGKR 116 (168)
T ss_dssp HHHHHHHHHHH---H-SEEEEHHH--TT-
T ss_pred HHHHHHHHHHC---CCCEEEEECCCCCCC
T ss_conf 36997987763---598999950248999
No 36
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity; PDB: 1y56_B 2rgh_A 2rgo_A 3da1_A 2qcu_B 2r4e_B 2r45_A 2r46_B 2r4j_B 3dme_B ....
Probab=82.13 E-value=0.62 Score=22.72 Aligned_cols=30 Identities=40% Similarity=0.552 Sum_probs=25.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 89996598568999999998659869999579
Q T0640 9 LAIITGASQGIGAVIAAGLATDGYRVVLIARS 40 (250)
Q Consensus 9 v~lVtGas~GiG~aia~~la~~G~~V~i~~r~ 40 (250)
|+|| |++=.|.++|..|++.|++|++..++
T Consensus 2 v~II--GaGi~Gl~~A~~La~~G~~V~lle~~ 31 (358)
T PF01266_consen 2 VIII--GAGIAGLSTAYELARRGYRVLLLERG 31 (358)
T ss_dssp EEEE---------HHHHHHHHSS-EEEEEESS
T ss_pred EEEE--CCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9999--96699999999999779969999654
No 37
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075)
Probab=80.51 E-value=1.4 Score=20.42 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=35.8
Q ss_pred CCEEEEECCC-CH---HHHHHHHHH--HHCCCEEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 7789996598-56---899999999--8659869999579899999999999842
Q T0640 7 KGLAIITGAS-QG---IGAVIAAGL--ATDGYRVVLIARSKQNLEKVHDEIMRSN 55 (250)
Q Consensus 7 ~kv~lVtGas-~G---iG~aia~~l--a~~G~~V~i~~r~~~~l~~~~~~i~~~~ 55 (250)
|++++|+|+. .| ++..++.+| ...+.+++.+..|....+.+...+....
T Consensus 1 k~v~lI~G~pGTGKTvl~~~l~~~l~~~~~~~~~~~l~~n~~~~~~l~~~l~~~~ 55 (352)
T PF09848_consen 1 KKVILITGGPGTGKTVLALNLAKELENSEKGKTVVYLSPNHPLVEVLYEALAEKL 55 (352)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 9699999489988999999999986232446558999758179999999987643
No 38
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 1jg3_A 1jg4_A 1jg1_A 1jg2_A 2yxe_A 1dl5_A 1vbf_C 2pbf_B 1i1n_A 1kr5_A ....
Probab=80.31 E-value=1.4 Score=20.38 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=59.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 77899965985689999999986598699995798999999999998427887428997247998999999999999629
Q T0640 7 KGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYG 86 (250)
Q Consensus 7 ~kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 86 (250)
+..+|-.|+++|.-.++.-+++....+|+...++++-.+.+...+.+.+.. ++.++..|... -..+.+
T Consensus 73 g~~VLdIGsGsGy~ta~la~l~g~~g~VvavE~~~~l~~~A~~~l~~~g~~--nV~~~~gd~~~----------g~~~~~ 140 (209)
T PF01135_consen 73 GDRVLDIGSGSGYQTAVLARLVGPVGRVVAVERDPELAERARENLRRLGLD--NVEVVHGDGPE----------GLPELA 140 (209)
T ss_dssp --EEEEE------HHHHHHHHHCCTEEEEEEBS-HHHHHHHHHHHHHHCTH--SEEEEB--GGG------------GGG-
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCC--CEEEEEECCCC----------CCCCCC
T ss_conf 987999469904999999986485876999932679999999999981999--76999924334----------776679
Q ss_pred CCEEEEECCCC
Q ss_conf 81388623544
Q T0640 87 AVDILVNAAAM 97 (250)
Q Consensus 87 ~iD~lv~nAG~ 97 (250)
+.|.++..++.
T Consensus 141 p~D~I~v~~a~ 151 (209)
T PF01135_consen 141 PFDRIIVGAAV 151 (209)
T ss_dssp SBSEEEESSBB
T ss_pred CCEEEEEECCC
T ss_conf 93089991266
No 39
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; PDB: 1yrl_C 1yve_J 1qmg_C 3fr7_A 3fr8_A 1np3_A.
Probab=80.01 E-value=1.5 Score=20.32 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Q ss_conf 58778999659856899999999865986999957989
Q T0640 5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQ 42 (250)
Q Consensus 5 ~~~kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~ 42 (250)
+++|++-|.|-++- |.+-|.-|-..|.+|++.-|...
T Consensus 2 lk~k~IAViGYGsQ-G~ahAlNLrDSGv~V~vglr~gs 38 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQ-GHAHALNLRDSGVDVIVGLREGS 38 (165)
T ss_dssp H---EEEEE----H-HHHHHHHHHHH--EEEE---HHH
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 36998999866718-99999777747996899988999
No 40
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338)
Probab=79.81 E-value=1.5 Score=20.28 Aligned_cols=136 Identities=14% Similarity=0.203 Sum_probs=81.3
Q ss_pred EEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH--------HHHHHHHHH
Q ss_conf 9996598568999999998659-8699995798999999999998427887428997247998--------999999999
Q T0640 10 AIITGASQGIGAVIAAGLATDG-YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDC--------TKADTEIKD 80 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~la~~G-~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~--------~~v~~~~~~ 80 (250)
+||.|. +-.--.+|..|-++| ++|-+.+|...+-+...+.+.+... .+..++-+. -.++.+++.
T Consensus 4 vLilGt-GP~aiQLAv~~k~~~~~~vgi~gR~S~rs~~ff~al~~~~~------~~~v~vqn~qh~~~~G~~~id~~~~~ 76 (429)
T PF10100_consen 4 VLILGT-GPVAIQLAVDLKKHGDCKVGIAGRESVRSQRFFEALAQSQQ------LLRVSVQNEQHQALEGKCTIDHVFKG 76 (429)
T ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCE------EEEEHHHHHHHHHHCCCCCHHHHHCC
T ss_conf 599637-76999999999853574564305732567999999972660------88751121677876287123687628
Q ss_pred HHHHCCCCEEEEECC-CCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHC--CCCEEECCCCHHHCCCC
Q ss_conf 999629813886235-4445653200-012344544332112220000000011000--11213113311110466
Q T0640 81 IHQKYGAVDILVNAA-AMFMDGSLSE-PVDNFRKIMEINVIAQYGILKTVTEIMKVQ--KNGYIFNVASRAAKYGF 152 (250)
Q Consensus 81 ~~~~~g~iD~lv~nA-G~~~~~~~~~-~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~--~~G~Iv~isS~~~~~~~ 152 (250)
..+-.|.=|.||.+. .-.+...+.. +.+...++=.+=|.+|.+-+..+...+... +.+-||-.||-.|..-+
T Consensus 77 ~~~i~geW~tlIlavtaDaY~~vL~QI~~~~L~~vk~~ILiSpt~GS~~lv~~~L~~~~~daeVISfStY~gdTr~ 152 (429)
T PF10100_consen 77 YKEITGEWDTLILAVTADAYYEVLQQIPWEVLKRVKCVILISPTFGSNLLVRNFLNKLGPDAEVISFSTYYGDTRW 152 (429)
T ss_pred HHHHCCCCCEEEEEEECHHHHHHHHHCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEHHCCCCEE
T ss_conf 8875041217999963177899998289988841668999754533479999999854999549985400253132
No 41
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2iyf_A 2p6p_B 3d0r_A 3d0q_B 1pn3_B 1pnv_B 1iir_A 1rrv_A 1nlm_A 1f0k_A ....
Probab=79.13 E-value=1.1 Score=21.04 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=27.5
Q ss_pred EEEEECCCCH---HHHHHHHHHHHCCCEEEEEECC
Q ss_conf 8999659856---8999999998659869999579
Q T0640 9 LAIITGASQG---IGAVIAAGLATDGYRVVLIARS 40 (250)
Q Consensus 9 v~lVtGas~G---iG~aia~~la~~G~~V~i~~r~ 40 (250)
++++||||+| =+.+++++|.++|++|.+....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~t~~ 35 (139)
T PF03033_consen 1 ILIATGGTGGHVYPALALARALRARGHEVRLATPE 35 (139)
T ss_dssp EEEEE-S----HHHHHHHHHHHHH---EEEEEETG
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 98996897067899999999999769928998357
No 42
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the core methyltransferase domain found in all TehB proteins.; PDB: 2i6g_B.
Probab=79.04 E-value=1.6 Score=20.12 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=40.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH
Q ss_conf 7899965985689999999986598699995798999999999998427887428997247998
Q T0640 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDC 71 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~ 71 (250)
.-||=.|.++| | -+.-|+++|+.|..+++++..++.+.....+.+- ++.+...|+.+.
T Consensus 32 ~kvLDlgCG~G--R-Nal~LA~~G~~VtavD~s~~ai~~l~~~a~~~~l---~i~~~~~Dl~~~ 89 (192)
T PF03848_consen 32 GKVLDLGCGSG--R-NALYLAQQGFDVTAVDISEEAIEKLKEIAEEEGL---DIRTIVADLNEA 89 (192)
T ss_dssp --EEE----------HHHHHHH----EEEEES-HHHHHHHHHHHHH------TEEEEE--TTT-
T ss_pred CCEEECCCCCC--H-HHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC---CEEEEEECCCCC
T ss_conf 98886158898--8-5999997899599997999999999999987098---307998542225
No 43
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR000960 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes . Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 , , , , . This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications . Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) , a novel gene was found to encode a protein with similarity to mammalian monooygenases. ; GO: 0004499 flavin-containing monooxygenase activity, 0050660 FAD binding, 0050661 NADP binding; PDB: 1w4x_A 2gvc_E 1vqw_A 2gv8_B 2vq7_C 2vqb_C.
Probab=78.71 E-value=0.69 Score=22.42 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=27.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Q ss_conf 87789996598568999999998659869999579899
Q T0640 6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQN 43 (250)
Q Consensus 6 ~~kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~ 43 (250)
+||||||=+|.+||. .|+.|.++|..+++..++.+-
T Consensus 1 ~k~VaIIGAG~sGL~--aak~l~~~G~~~~~fE~~~~i 36 (531)
T PF00743_consen 1 KKRVAIIGAGPSGLA--AAKCLLEEGLDPTCFEKSSDI 36 (531)
T ss_dssp --EEEEE-------H--HHHHHHH---EEEEE-SSS--
T ss_pred CCEEEEECCCHHHHH--HHHHHHHCCCCEEEEECCCCC
T ss_conf 988999896499999--999998789982999748995
No 44
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C (e.g. P44453 from SWISSPROT) as well as other methyltransferases (e.g. Q53742 from SWISSPROT).; GO: 0008168 methyltransferase activity; PDB: 1nv8_B 1vq1_B 1sg9_B 1nv9_A 1dus_A 3dmf_A 3dmg_A 3dmh_A 2pjd_A 2yxd_B ....
Probab=78.23 E-value=1.6 Score=19.97 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=51.4
Q ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 8778999659856-899999999865986999957989999999999984278874289972479989999999999996
Q T0640 6 QKGLAIITGASQG-IGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK 84 (250)
Q Consensus 6 ~~kv~lVtGas~G-iG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (250)
.++.++=.|+++| ++..+++.. ...+|+.++.|++.++-+...+...+.. ++.++..|+.+...
T Consensus 31 ~~~~vlDlG~G~G~i~~~la~~~--~~~~v~~vDi~~~a~~~a~~n~~~~~~~--~v~v~~~d~~~~~~----------- 95 (170)
T PF05175_consen 31 PGGRVLDLGCGSGIIALALAKRG--PNARVTAVDINPEALELARKNAERNGLE--NVEVIQSDLLEALP----------- 95 (170)
T ss_dssp TT-EEEEE------HHHHHHHHS--SESEEEEEESCHHHHHHHHHHHHHTT-T--TEEEEECSTTCTGC-----------
T ss_pred CCCEEEEEEEEHHHHHHHHHHHC--CCCEEEEEEHHHHHHHHHHHHHHHHCCC--CEEEEECCCCCCCC-----------
T ss_conf 69989998520439999999978--9987999844999999999999993986--10434254334122-----------
Q ss_pred CCCCEEEEECC
Q ss_conf 29813886235
Q T0640 85 YGAVDILVNAA 95 (250)
Q Consensus 85 ~g~iD~lv~nA 95 (250)
.++.|+++.|-
T Consensus 96 ~~~fD~Iv~NP 106 (170)
T PF05175_consen 96 DGKFDLIVSNP 106 (170)
T ss_dssp TTTBSEEEE--
T ss_pred CCCEEEEEECC
T ss_conf 67477999789
No 45
>PF06564 YhjQ: YhjQ protein; InterPro: IPR009504 This family consists of several bacterial YhjQ proteins. The function of this family is unknown.
Probab=75.29 E-value=1.2 Score=20.79 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=38.9
Q ss_pred CEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 78999659856899-----99999986598699995798999999999998427887428997247998999999
Q T0640 8 GLAIITGASQGIGA-----VIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTE 77 (250)
Q Consensus 8 kv~lVtGas~GiG~-----aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~ 77 (250)
|++.|+|..+|.|+ ++|..|.+.|.+|+.++-+++++=. ..+.+|....+...+.
T Consensus 2 ~~i~i~s~rGGvG~TTltA~LA~aL~~~g~~VlaID~dp~NlLr---------------lhfgl~~~~~~G~a~a 61 (243)
T PF06564_consen 2 KRIAIVSVRGGVGRTTLTANLAWALQRLGEPVLAIDLDPQNLLR---------------LHFGLPFSQRDGWARA 61 (243)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHCC---------------EECCCCCCCCCCHHHH
T ss_conf 57999717888778999999999999769956999658411015---------------2128996656607898
No 46
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase , an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 amino acid metabolic process, 0005737 cytoplasm; PDB: 2hjs_A 2qz9_B 2r00_B 2fmu_A 2bka_A 1mb4_A 1mc4_A 1t4b_B 1t4d_A 1brm_C ....
Probab=74.40 E-value=1.3 Score=20.68 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=26.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-E-EEEEECCHHHHHHH
Q ss_conf 7899965985689999999986598-6-99995798999999
Q T0640 8 GLAIITGASQGIGAVIAAGLATDGY-R-VVLIARSKQNLEKV 47 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G~-~-V~i~~r~~~~l~~~ 47 (250)
|+ .|.||++-+|+++.+.|.++-. . +.+.+|+.+..+..
T Consensus 1 kv-~IvGAtG~vG~~ll~~L~~~p~~e~~~~~~~~~~~g~~~ 41 (121)
T PF01118_consen 1 KV-AIVGATGYVGRELLRLLAEHPDFEIVALVSRSRSAGKPL 41 (121)
T ss_dssp EE-EEE--------HHHHHHHHTSSEEEEEEEESTTT---BH
T ss_pred CE-EEECCCCHHHHHHHHHHHCCCCEEEEEEEECCHHCCCCH
T ss_conf 99-999998979999999996599955999885052128775
No 47
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3eey_A.
Probab=73.24 E-value=2.1 Score=19.32 Aligned_cols=115 Identities=15% Similarity=0.096 Sum_probs=65.0
Q ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 69999579899999999999842788742899724799899999999999962981388623544456532000123445
Q T0640 33 RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRK 112 (250)
Q Consensus 33 ~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~e~~~~ 112 (250)
+|+..+..++.++.+.+.+.+.+... ++..+.. +-+.+.+.+. + +++|+.++|-|..+.+.-.
T Consensus 1 ~V~aFDIQ~~Al~~T~~rL~~~~~~~-~v~Li~~---~He~l~~~v~---~--~~v~~~iFNLGYLPggDk~-------- 63 (140)
T PF06962_consen 1 KVYAFDIQEEALANTRKRLEEAGLSD-RVELILD---SHENLAEYVP---E--GPVDAAIFNLGYLPGGDKS-------- 63 (140)
T ss_dssp -EE--BS-HHHHHHHHHHHHHTT-GG-GB---B------TTGGGT-----S----BSEEEEEE-------TT--------
T ss_pred CEEEEECHHHHHHHHHHHHHHCCCCC-CEEEEEC---CHHHHHHHCC---C--CCCCEEEEECCCCCCCCCC--------
T ss_conf 97999768999999999999669875-3899976---9878985375---5--7768899967868899986--------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 44332112220000000011000112131133111104667760668889999999999999
Q T0640 113 IMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYR 174 (250)
Q Consensus 113 ~~~vNl~~~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~ 174 (250)
+-+.-.+++...++++..++ ++|.|+.+... |...=..=|.|+..|.+.|..
T Consensus 64 -i~T~~~TTi~Al~~~l~lL~--~gGii~iv~Y~-------GH~gG~~E~~av~~~~~~L~~ 115 (140)
T PF06962_consen 64 -ITTKPETTIAALEAALELLK--PGGIISIVIYP-------GHPGGKEEKDAVEEFLASLPQ 115 (140)
T ss_dssp -S---HHHHHHHHHHHHHHB-------EEEEE---------------HHHHHHHHHH----T
T ss_pred -CCCCCHHHHHHHHHHHHHHC--CCCEEEEEEEC-------CCCCCHHHHHHHHHHHHHCCC
T ss_conf -66686129999999998417--79899999958-------999879999999999984894
No 48
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 This family represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria . This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes . X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller .; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1knx_F 1ko7_A 2qmh_B 1kkm_C 1kkl_A 1jb1_A.
Probab=68.84 E-value=1.2 Score=20.86 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=25.4
Q ss_pred CCCCCEEEEECCCCHHHHH-HHHHHHHCCCEEEEEE
Q ss_conf 5587789996598568999-9999986598699995
Q T0640 4 EKQKGLAIITGASQGIGAV-IAAGLATDGYRVVLIA 38 (250)
Q Consensus 4 ~~~~kv~lVtGas~GiG~a-ia~~la~~G~~V~i~~ 38 (250)
...++=++|+|. +|+|+. +|.+|.++|++++.=+
T Consensus 15 ~i~G~GVLi~G~-SG~GKS~lal~Li~rGh~lVaDD 49 (171)
T PF07475_consen 15 DIGGVGVLITGP-SGAGKSELALELIERGHRLVADD 49 (171)
T ss_dssp E------EEE--------HHHHHHHHHTT-EEEESS
T ss_pred EECCEEEEEECC-CCCCHHHHHHHHHHCCCCEECCC
T ss_conf 999999999868-99998999999998799268278
No 49
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium ., and CobQ from Rhodobacter capsulatus . These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria .; GO: 0042242 cobyrinic acid a,c-diamide synthase activity, 0009236 cobalamin biosynthetic process; PDB: 2oze_A 3cwq_A 3ez6_B 3ez7_A 3ez2_B 3ezf_A 3ez9_B 1dah_A 1dag_A 1bs1_A ....
Probab=66.72 E-value=3 Score=18.22 Aligned_cols=33 Identities=36% Similarity=0.553 Sum_probs=27.1
Q ss_pred EEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
Q ss_conf 9996598568999-----99999865986999957989
Q T0640 10 AIITGASQGIGAV-----IAAGLATDGYRVVLIARSKQ 42 (250)
Q Consensus 10 ~lVtGas~GiG~a-----ia~~la~~G~~V~i~~r~~~ 42 (250)
+.|+|..+|.|+. +|..|+++|.+|.+.+-+..
T Consensus 1 I~v~~~kGGvGKTt~a~~la~~la~~g~~Vl~iD~D~~ 38 (194)
T PF01656_consen 1 IAVTSTKGGVGKTTIAANLAQALARKGKRVLLIDLDPQ 38 (194)
T ss_dssp EEEEESSTT-HHHHHHHHHHHHHHHTT--EEEEECCTS
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 98984899987899999999998643023244357877
No 50
>PF02374 ArsA_ATPase: Anion-transporting ATPase; InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane; PDB: 1f48_A 1ii0_A 1ihu_A 1ii9_B 2ph1_A.
Probab=65.61 E-value=2.4 Score=18.93 Aligned_cols=74 Identities=16% Similarity=0.307 Sum_probs=42.4
Q ss_pred CEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-HCC----C--CCCEEEEECCCCCHHHHH
Q ss_conf 78999659856899-----99999986598699995798999999999998-427----8--874289972479989999
Q T0640 8 GLAIITGASQGIGA-----VIAAGLATDGYRVVLIARSKQNLEKVHDEIMR-SNK----H--VQEPIVLPLDITDCTKAD 75 (250)
Q Consensus 8 kv~lVtGas~GiG~-----aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~-~~~----~--~~~~~~~~~Dv~~~~~v~ 75 (250)
|+ ++.||-+|.|+ |+|..++++|.++.+++-|+.. .+.+-+.. .+. - ..+......|.. ..++
T Consensus 2 r~-i~~~GKGGVGKTT~aaA~A~~~A~~G~~tLlvStDpah--sL~d~l~~~~~~~p~~v~~~~~L~~~eid~~--~~~~ 76 (305)
T PF02374_consen 2 RI-IFFGGKGGVGKTTVAAATALALARRGKRTLLVSTDPAH--SLGDVLGQELGNEPTRVEGLPNLYAMEIDPE--AELE 76 (305)
T ss_dssp CE-EEEE-------HHHHHHHHHHHHH----EEEEESSTT-------TTSS------EE-TT-TTEEEEE--HH--HHHH
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC--CHHHHHCCCCCCCCEEECCCCCCCCCCCCHH--HHHH
T ss_conf 09-99937888744899999999998379965998369742--2999848987888646347898640236899--9999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999999629
Q T0640 76 TEIKDIHQKYG 86 (250)
Q Consensus 76 ~~~~~~~~~~g 86 (250)
+..+.+.+...
T Consensus 77 ~~~~~~~~~~~ 87 (305)
T PF02374_consen 77 EYWEEVKKYLA 87 (305)
T ss_dssp HHHHHHHHHG-
T ss_pred HHHHHHHHHHH
T ss_conf 99999998875
No 51
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This is a family of putative P-loop ATPases . Many of the proteins in this family are hypothetical and kinase activity has been proposed for some family members. This family contains an ATP-binding site and could be an ATPase.
Probab=62.95 E-value=3.6 Score=17.77 Aligned_cols=86 Identities=24% Similarity=0.270 Sum_probs=53.8
Q ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH---HH
Q ss_conf 78999659856899999999865-986999957989999999999984278874289972479989999999999---99
Q T0640 8 GLAIITGASQGIGAVIAAGLATD-GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDI---HQ 83 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~-G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~---~~ 83 (250)
+++||||= ||=|+..|.+..+. |+..+= ---.+-+.++.+.+.+.... .+-.++.+|+.+.+....+.+.+ .+
T Consensus 2 ~~vIVTGl-SGaGKS~Al~~lED~GyycvD-NlP~~Ll~~l~~~~~~~~~~-~~~vAi~iD~R~~~~~~~~~~~~~~l~~ 78 (284)
T PF03668_consen 2 ELVIVTGL-SGAGKSTALRALEDLGYYCVD-NLPPSLLPQLIELLSQSDGK-IEKVAIVIDIRSREFFDDLFEVLDELRK 78 (284)
T ss_pred EEEEEECC-CCCCHHHHHHHHHCCCCEEEC-CCCHHHHHHHHHHHHHCCCC-CCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 49999478-878789999999707945564-88899999999998622788-8836999968880556769999999997
Q ss_pred HCCCCEEEEECCC
Q ss_conf 6298138862354
Q T0640 84 KYGAVDILVNAAA 96 (250)
Q Consensus 84 ~~g~iD~lv~nAG 96 (250)
.--.+.+|+.-|.
T Consensus 79 ~~~~~~ilFLdA~ 91 (284)
T PF03668_consen 79 QGIDVKILFLDAS 91 (284)
T ss_pred CCCCEEEEEEECC
T ss_conf 7996389999798
No 52
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR001282 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types . The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells . Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes .; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0006006 glucose metabolic process; PDB: 1dpg_A 1e7y_A 1e7m_A 1h9b_A 1h9a_A 1h94_A 1e77_A 1h93_A 2dpg_A 1qki_B ....
Probab=61.92 E-value=1.4 Score=20.35 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=40.2
Q ss_pred EEECCCCHHHHH---------HHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCC--------------CCCCEEEEECC
Q ss_conf 996598568999---------9999986598699995798999999999998427--------------88742899724
Q T0640 11 IITGASQGIGAV---------IAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNK--------------HVQEPIVLPLD 67 (250)
Q Consensus 11 lVtGas~GiG~a---------ia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~--------------~~~~~~~~~~D 67 (250)
||.|||+.+-+- ....++.++.+|+..+|+.-.-++..+.+.+.-. ....+.++++|
T Consensus 1 ViFGAtGDLa~RKL~PaL~~L~~~g~lp~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~F~~~~~Y~~~d 80 (183)
T PF00479_consen 1 VIFGATGDLAKRKLFPALYNLYRDGLLPEDFRIIGVARSDMSDEEFREKVRESLKEFSRGEEDEEVWDEFLSRLSYVQGD 80 (183)
T ss_dssp EEE-----HHHHTHHHHHHHHHH-----SSEEEE--BSS--SHCCCHHHHCHHCCG---GGCCHHHHHHHHTTB---B--
T ss_pred CEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEECC
T ss_conf 90356438888689999999999379999938999869989999999999999986425657999999999628798479
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 7998999999999999
Q T0640 68 ITDCTKADTEIKDIHQ 83 (250)
Q Consensus 68 v~~~~~v~~~~~~~~~ 83 (250)
++++++.+++-+.+.+
T Consensus 81 ~~~~~~y~~L~~~l~~ 96 (183)
T PF00479_consen 81 YDDPESYEALKKALEE 96 (183)
T ss_dssp TT-CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9976689999999987
No 53
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium .
Probab=61.77 E-value=3.7 Score=17.63 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=39.2
Q ss_pred EEEEECCC--CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH----HHHHHHHHHHH
Q ss_conf 89996598--5689999999986598699995798999999999998427887428997247998----99999999999
Q T0640 9 LAIITGAS--QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDC----TKADTEIKDIH 82 (250)
Q Consensus 9 v~lVtGas--~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~----~~v~~~~~~~~ 82 (250)
++++.|-+ +++.+.+|++|+++|+.|+.++- +. .+.. -.+| .++.++++...
T Consensus 5 av~~SGDGGW~~~d~~~a~~La~~G~~VvGids----lr----Yfw~--------------~rtP~~~a~dl~~ii~~y~ 62 (192)
T PF06057_consen 5 AVFYSGDGGWRDLDKGVAKALAKQGVPVVGIDS----LR----YFWS--------------ERTPEQTAADLERIIDHYR 62 (192)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCEEEEECH----HH----HHHH--------------CCCHHHHHHHHHHHHHHHH
T ss_conf 999927888046659999999977990788627----99----9874--------------0898899999999999999
Q ss_pred HHCCCCEEEE
Q ss_conf 9629813886
Q T0640 83 QKYGAVDILV 92 (250)
Q Consensus 83 ~~~g~iD~lv 92 (250)
++++.=.+++
T Consensus 63 ~~w~~~~vvL 72 (192)
T PF06057_consen 63 ARWGRKRVVL 72 (192)
T ss_pred HHHCCCEEEE
T ss_conf 9858971899
No 54
>PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis . It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage.
Probab=61.09 E-value=3.8 Score=17.55 Aligned_cols=95 Identities=17% Similarity=0.043 Sum_probs=56.1
Q ss_pred CCEEEEECCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHCCCCCCCHHHHHHHHH
Q ss_conf 81388623544456532--0001234454433211222000000001100011213113311110466776066888999
Q T0640 87 AVDILVNAAAMFMDGSL--SEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFA 164 (250)
Q Consensus 87 ~iD~lv~nAG~~~~~~~--~~~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaa 164 (250)
.||.+|.+-|......- .......+ +++| +.++|++.+.+++.+..++|.+||..+... .....|-=+|.=
T Consensus 203 ~i~t~is~LGTT~~~ag~s~~~~~~ID--y~Ln----l~laqafa~~~~~~~~K~~VvVSSfga~~~-Ss~f~YfK~Kgk 275 (410)
T PF08732_consen 203 DIDTMISCLGTTSAQAGSSEAARYKID--YDLN----LDLAQAFANDAKNNGVKRYVVVSSFGASAL-SSMFPYFKTKGK 275 (410)
T ss_pred CCCCEEEECCCCHHHHCCCCCCHHHHC--HHCC----HHHHHHHHHHHHCCCCEEEEEEEECCCCCC-CCCCHHHHHHHH
T ss_conf 300125615775565344533456632--1135----699999766653068607999972487643-322056665768
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 999999999998417968998568870
Q T0640 165 LLGLAESLYRELAPLGIRVTTLCPGWV 191 (250)
Q Consensus 165 l~~l~~~la~e~~~~gIrvn~I~PG~v 191 (250)
|+.-...+ +.+.==+...+.||++
T Consensus 276 LE~dl~~l---~~~~f~~lVILRPGPL 299 (410)
T PF08732_consen 276 LENDLQAL---LANKFKHLVILRPGPL 299 (410)
T ss_pred HHHHHHHH---CCCCCCEEEEECCCCC
T ss_conf 99999875---3455333899437663
No 55
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III . The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains . Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase . ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1wcx_A 1wcw_A 1wd7_B 3d8t_B 3d8s_A 3d8r_A 3d8n_A 1jr2_B.
Probab=60.44 E-value=0.56 Score=23.02 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=31.2
Q ss_pred HHHHHHHHCCCEEEEEEC-C--H-HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 999999865986999957-9--8-99999999999842788742899724799899999999999
Q T0640 22 VIAAGLATDGYRVVLIAR-S--K-QNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
Q Consensus 22 aia~~la~~G~~V~i~~r-~--~-~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
++++.|.+.|+.++..-- + . ....++...+...........+ +++...++.+++.+.
T Consensus 2 ~~~~~l~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~~~d~vi----ftS~~av~~~~~~l~ 62 (229)
T PF02602_consen 2 ELAELLEKLGAEVIHLPLIEIEPLPDDAELEAALEDLALGEFDWVI----FTSPNAVEAFFEALK 62 (229)
T ss_dssp HHHHHHHH---EEEEEE-EECEECCHHHHHHHHHHHHTGGG--EEE----E-SHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCEEEEECCCHHHHHHHHHHCCCCCCCEEE----EECHHHHHHHHHHHH
T ss_conf 7899999879989997888898478879999998720367888899----979899999999997
No 56
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H_2O molecule by the concomitant oxidation of NAD(P)H . P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding .; GO: 0004497 monooxygenase activity, 0006118 electron transport, 0006725 aromatic compound metabolic process; PDB: 3gmc_B 3gmb_A 3cgv_A 2c4c_A 2bry_B 2bra_B 3fmw_A 2qa2_A 2qa1_A 1foh_C ....
Probab=60.03 E-value=4 Score=17.43 Aligned_cols=33 Identities=33% Similarity=0.538 Sum_probs=24.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Q ss_conf 78999659856899999999865986999957989
Q T0640 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQ 42 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~ 42 (250)
+|+ |.||+- -|.++|..|+++|.+|.+..|+..
T Consensus 3 dVi-IvGgG~-aGl~~A~~L~~~G~~v~viE~~~~ 35 (356)
T PF01494_consen 3 DVI-IVGGGP-AGLALALALARAGIRVLVIERRPS 35 (356)
T ss_dssp EEE-EE--------HHHHHHHHCTCEEEEEESSSS
T ss_pred EEE-EECCCH-HHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 699-989899-999999999976995789711247
No 57
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesizes 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms . In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis.; PDB: 2jcy_A 2jd0_B 2jd1_B 2jcv_A 2c82_B 2jcz_B 2jd2_A 2jcx_B 1r0l_B 1r0k_A ....
Probab=57.70 E-value=4.4 Score=17.18 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=37.6
Q ss_pred EEEECCCCHHHHHHHHHHHHCC--CEEEEEE--CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9996598568999999998659--8699995--7989999999999984278874289972479989999999999
Q T0640 10 AIITGASQGIGAVIAAGLATDG--YRVVLIA--RSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDI 81 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~la~~G--~~V~i~~--r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 81 (250)
+.|.|+++-||.....-..+.. ++|+... +|.+.+.+...++ .+ +..+ +.|++...++-+.+
T Consensus 1 I~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f---~p---~~v~----v~d~~~~~~l~~~l 66 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRRHPDRFEVVALSAGSNIELLAEQAREF---KP---KYVV----VADEEAAEELKERL 66 (129)
T ss_dssp EEEE--------HHHHHHHHTTTTEEEEEEEESS-HHHHHHHHHHC---T----SEEE----ESSHHHHHHHHHHC
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH---CC---CEEE----EECHHHHHHHHHHH
T ss_conf 9897458548899999999698745999998588899999999996---99---9899----90889999999977
No 58
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. This entry represents the alpha and beta subunits found in the F1, V1, and A1 complexes of F-, V- and A-ATPases, respectively (sometimes called the A and B subunits in V- and A-ATPases), as well as flagellar ATPase and the termination factor Rho. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis , . In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself is driven by the movement of protons through the F0 complex C subunit . In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The alpha/A and beta/B subunits can each be divided into three regions, or domains, centred around the ATP-binding pocket, and based on structure and function. The central domain contains the nucleotide-binding residues that make direct contact with the ADP/ATP molecule . More information about this protein can be found at Protein of the Month: ATP Synthases . ; GO: 0015078 hydrogen ion transmembrane transporter activity, 0016469 proton-transporting two-sector ATPase complex; PDB: 3eiu_B 2c61_B 2rkw_A 3dsr_A 3b2q_A 2r9v_A 1mab_A 2f43_A 1h8e_C 2ck3_B ....
Probab=57.32 E-value=4.4 Score=17.14 Aligned_cols=12 Identities=0% Similarity=0.149 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999999
Q T0640 71 CTKADTEIKDIH 82 (250)
Q Consensus 71 ~~~v~~~~~~~~ 82 (250)
.+++.++++.+.
T Consensus 53 ~~Ev~~~~~~~~ 64 (215)
T PF00006_consen 53 GREVTEFVEELE 64 (215)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHC
T ss_conf 012788986530
No 59
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=56.85 E-value=4.5 Score=17.09 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=40.1
Q ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 999999998659869999579899999999999842788742899724799899999999999962981388623
Q T0640 20 GAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNA 94 (250)
Q Consensus 20 G~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~n 94 (250)
=..+.....++|.+|++.+-+++.++++++.+.+..+...-+-....-. ++++.+++++.+.+. ..|+++-.
T Consensus 37 ~~~l~~~~~~~~~rifllG~~~~~~~~~~~~l~~~yP~l~i~G~~~g~f-~~~e~~~i~~~I~~s--~pdiv~vg 108 (172)
T PF03808_consen 37 FPDLLRYAERRGKRIFLLGGSEEVLEKAAERLRARYPGLQIVGYYHGYF-GPEEEEAIIEAINAS--GPDIVFVG 108 (172)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCC-CHHHHHHHHHHHHHC--CCCEEEEE
T ss_conf 9999998776198399990988999999999998889971885249999-978999999999972--96999998
No 60
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1bxr_G 1m6v_C 1c30_E 1kee_G 1c3o_E 1jdb_B 1ce8_C 1cs0_G 1a9x_A 1t36_G ....
Probab=56.16 E-value=4.6 Score=17.02 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=42.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE--CCCCCHHHHHHHHHHHHHHC
Q ss_conf 7899965985689999999986598699995798999999999998427887428997--24799899999999999962
Q T0640 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLP--LDITDCTKADTEIKDIHQKY 85 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~--~Dv~~~~~v~~~~~~~~~~~ 85 (250)
|-+|| =+++.++..+.+.+-+.|.++++++-+++....-.+ ...+...++ .+....-++++.++-+.++
T Consensus 3 kkvLI-anrG~ia~r~~r~~~e~gi~tv~v~s~~d~~s~~~~-------~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~- 73 (110)
T PF00289_consen 3 KKVLI-ANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVR-------LADELYFEPPGPPAESYLNVERILDIARKE- 73 (110)
T ss_dssp SEEEE-S--HHHHHHHHHHHHHHSSEEEEEESGGGTTGHHHH-------HSSEEEES---SGGGTTTSHHHHHHHHHHT-
T ss_pred CEEEE-ECCCHHHHHHHHHHHHCCCEEEEECCHHHHHCCCHH-------HCCEEEECCCCCHHHHHCCHHHHHHHHHHH-
T ss_conf 67999-898899999999999869947898285885155831-------156578758862033215899999999873-
Q ss_pred CCCEEEE
Q ss_conf 9813886
Q T0640 86 GAVDILV 92 (250)
Q Consensus 86 g~iD~lv 92 (250)
.+|.+.
T Consensus 74 -g~~ai~ 79 (110)
T PF00289_consen 74 -GVDAIH 79 (110)
T ss_dssp -TESEEE
T ss_pred -CCEEEE
T ss_conf -968998
No 61
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown .; PDB: 2nyd_B 1nmp_E 1nmo_E 2yyb_A 2fyw_B 2gx8_C.
Probab=54.78 E-value=2.4 Score=18.93 Aligned_cols=20 Identities=45% Similarity=0.549 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHCCCCEEE
Q ss_conf 99999999999841796899
Q T0640 165 LLGLAESLYRELAPLGIRVT 184 (250)
Q Consensus 165 l~~l~~~la~e~~~~gIrvn 184 (250)
+..|.+.+..-+...+||++
T Consensus 144 ~~~l~~~lk~~l~~~~v~~~ 163 (241)
T PF01784_consen 144 LEELAERLKKRLGLPGVRVV 163 (241)
T ss_dssp HHHHHHHHHHHTT-S-EEEE
T ss_pred HHHHHHHHHHHCCCCCEEEE
T ss_conf 99999999987299977994
No 62
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of methyltransferases. Methyltransferases are responsible for the transfer of methyl groups between two molecules.; GO: 0008168 methyltransferase activity; PDB: 1n2x_A 1m6y_B 1wg8_B.
Probab=54.45 E-value=4.9 Score=16.84 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=50.6
Q ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 65985689999999986598699995798999999999998427887428997247998999999999999629813886
Q T0640 13 TGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILV 92 (250)
Q Consensus 13 tGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv 92 (250)
|=|.+|=-+++.+++.. .+|+..+||++.++.+.+.+.. ...++..+..+.++...+-... ...+.+|.++
T Consensus 28 TlG~GGHS~aiL~~~~~--g~lig~D~D~~Al~~a~~~l~~---~~~r~~~~~~nF~~~~~~l~~~----~~~~~vdGiL 98 (310)
T PF01795_consen 28 TLGGGGHSRAILEALPP--GRLIGIDRDPDALAAARERLEP---FDDRFTFIHGNFSNLKEVLEEL----GGIGKVDGIL 98 (310)
T ss_dssp T------HHHHHHH------EEE--BS-HHHHHHHHHCTCC---CCCCB---BS-CCCHHHHHHH----------B---E
T ss_pred ECCCCHHHHHHHHHCCC--CEEEEECCCHHHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHH----CCCCCCCEEE
T ss_conf 05787999999997899--8899975999999999999862---6994899967587899999970----5987767799
Q ss_pred ECCCCC
Q ss_conf 235444
Q T0640 93 NAAAMF 98 (250)
Q Consensus 93 ~nAG~~ 98 (250)
.--|++
T Consensus 99 ~DLGvS 104 (310)
T PF01795_consen 99 LDLGVS 104 (310)
T ss_dssp EE----
T ss_pred EECCCC
T ss_conf 816788
No 63
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyze the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 3cea_A 3ec7_D 3euw_A 3ezy_B 3e18_A 2p2s_A 3dty_B 1tlt_B 1xea_D 3bio_A ....
Probab=53.41 E-value=5.1 Score=16.73 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=28.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEE-EEECCHHHHHHHHH
Q ss_conf 78999659856899999999865--98699-99579899999999
Q T0640 8 GLAIITGASQGIGAVIAAGLATD--GYRVV-LIARSKQNLEKVHD 49 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~--G~~V~-i~~r~~~~l~~~~~ 49 (250)
|+++| |. +.+|....+.+.+. +.+|+ +.+++.++.++..+
T Consensus 2 rv~iI-G~-G~~~~~~~~~~~~~~~~~~v~av~d~~~~~~~~~~~ 44 (120)
T PF01408_consen 2 RVGII-GA-GRIGKRHLRALRRSPPGVEVVAVVDPDPERAEAFAK 44 (120)
T ss_dssp EEEEE-CE--THHHHHHHHHHHTTTTEEEEEEESSSHHHHHHHHH
T ss_pred EEEEE-CC-CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 89999-38-399999999999649993899998799999999999
No 64
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2k4m_A.
Probab=52.77 E-value=2.9 Score=18.37 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=33.3
Q ss_pred CCCEEEEECCCCHHHH--HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHH
Q ss_conf 8778999659856899--9999998659869999579899999999999842788742899724799899
Q T0640 6 QKGLAIITGASQGIGA--VIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTK 73 (250)
Q Consensus 6 ~~kv~lVtGas~GiG~--aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~ 73 (250)
.+|++=| |+|+ .+|+.|.+.|..|+.++.+..++. ....++.-|+.+++-
T Consensus 14 ~~~vvEV-----GiG~~~~vA~~L~~~g~dv~~tDi~~~~a~-------------~gl~~v~DDif~P~l 65 (127)
T PF03686_consen 14 YGRVVEV-----GIGFNPDVAKKLKEAGIDVTATDINPCDAP-------------EGLNFVRDDIFNPNL 65 (127)
T ss_dssp --EEEEE-----------HHHHHHHHHS-EEEEB-SS-----------------------B---SSS--H
T ss_pred CCCEEEE-----CCCCCHHHHHHHHHCCCCEEEEECCCCCCC-------------CCCCEEEECCCCCCH
T ss_conf 7877998-----467887999999985997899975543234-------------677513301449987
No 65
>PF09419 DUF2010: Protein of unknown function
Probab=52.76 E-value=5.2 Score=16.66 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=41.8
Q ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCC
Q ss_conf 99865986999957989999999999984278874289972479989999999999996298--1388623544456532
Q T0640 26 GLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGA--VDILVNAAAMFMDGSL 103 (250)
Q Consensus 26 ~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~--iD~lv~nAG~~~~~~~ 103 (250)
.|.++|.+.++.+.|- .....-+-.=++++.+.++++.+.++. |-++=||||... .+-
T Consensus 35 ~L~~~GIk~lv~D~DN-------------------TL~~~~~~~~~~~~~~~l~~lk~~~~~~~v~IVSNnags~~-~~~ 94 (168)
T PF09419_consen 35 HLKKRGIKALVFDKDN-------------------TLTPPHEPEIPPEVKEWLNELKKAFGKDKVLIVSNNAGSRD-DPD 94 (168)
T ss_pred HHHHCCCCEEEECCCC-------------------CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CCC
T ss_conf 5866697689986788-------------------67889988799899999999998779962999989976556-745
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 000123445443321
Q T0640 104 SEPVDNFRKIMEINV 118 (250)
Q Consensus 104 ~~~~e~~~~~~~vNl 118 (250)
....+.+++.+.+.+
T Consensus 95 ~~~~~~~~~~lgi~v 109 (168)
T PF09419_consen 95 GERAKAFEKKLGIPV 109 (168)
T ss_pred HHHHHHHHHHCCCCE
T ss_conf 899999998649837
No 66
>PF10294 Methyltransf_16: Putative methyltransferase
Probab=51.49 E-value=5.5 Score=16.53 Aligned_cols=79 Identities=22% Similarity=0.154 Sum_probs=49.9
Q ss_pred CCCCCEEEEECCCCHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 55877899965985689-99999998659869999579899999999999842788742899724799899999999999
Q T0640 4 EKQKGLAIITGASQGIG-AVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
Q Consensus 4 ~~~~kv~lVtGas~GiG-~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
..++|.||=.|++-|+- ..+|+. ..+.+|++++.++ -++.+..-+.. ...++.+..+|=.++.. ...
T Consensus 42 ~~~~~~VLELGaG~Gl~gl~~a~~--~~~~~V~~TD~~~-~l~~l~~Ni~~---~~~~v~~~~LdW~~~~~-----~~~- 109 (168)
T PF10294_consen 42 LFRGKRVLELGAGTGLVGLVAAKL--LGAASVVLTDYNE-VLELLRRNIEL---NSSKVKVRVLDWGDDLP-----SDF- 109 (168)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHH--CCCCEEEEEECHH-HHHHHHHHHHH---CCCCEEEEECCCCCCCC-----CCC-
T ss_conf 147975999688788899999982--7887799985389-89999999984---57733799745357445-----332-
Q ss_pred HHCCCCEEEEEC
Q ss_conf 962981388623
Q T0640 83 QKYGAVDILVNA 94 (250)
Q Consensus 83 ~~~g~iD~lv~n 94 (250)
.+.++.|+++.+
T Consensus 110 ~~~~~~D~Ilas 121 (168)
T PF10294_consen 110 LEEESFDLILAS 121 (168)
T ss_pred CCCCCCCEEEEE
T ss_conf 456888899994
No 67
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 . H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast .; PDB: 1nw3_A 1u2z_B.
Probab=50.78 E-value=5.6 Score=16.46 Aligned_cols=76 Identities=21% Similarity=0.195 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHH---HHH----HHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 59856899999999865986-999957989999999---999----9842788742899724799899999999999962
Q T0640 14 GASQGIGAVIAAGLATDGYR-VVLIARSKQNLEKVH---DEI----MRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY 85 (250)
Q Consensus 14 Gas~GiG~aia~~la~~G~~-V~i~~r~~~~l~~~~---~~i----~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (250)
==++|+|+.+.++-+..|++ .+.+-.++...+-+. +++ ...+....++.....|..+.+.++..+.+.
T Consensus 48 DLGSG~G~~v~~aA~~~~~~~~~GiE~~~~~~~~A~~~~~~~~~~~~~~G~~~~~~~l~~gDF~~~~~~~~~~~~a---- 123 (205)
T PF08123_consen 48 DLGSGVGRVVLQAALEFGCKKSVGIEIMPELADLAEKQWEELKKRMKIFGKKPGEVELIRGDFLDNDFVEEIISEA---- 123 (205)
T ss_dssp EE------HHHHHHHH---SEEE--B-SHHHHHHHHHHHHHHHHHHHH-------B---SS-TTTHHHHHHHGHH-----
T ss_pred ECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCCC----
T ss_conf 8999989999999987498679978707589999999999999999983877765488554533551334321679----
Q ss_pred CCCE-EEEECCC
Q ss_conf 9813-8862354
Q T0640 86 GAVD-ILVNAAA 96 (250)
Q Consensus 86 g~iD-~lv~nAG 96 (250)
| +++||-.
T Consensus 124 ---tVIfvnN~~ 132 (205)
T PF08123_consen 124 ---TVIFVNNFA 132 (205)
T ss_dssp ---SEEEE--TT
T ss_pred ---CEEEEECCC
T ss_conf ---899994544
No 68
>PF08883 DOPA_dioxygen: Dopa 4,5-dioxygenase family; InterPro: IPR014980 This family of proteins is related to P87064 from SWISSPROT a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore. ; PDB: 2p8i_B 2nyh_B.
Probab=50.24 E-value=5.7 Score=16.41 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=28.8
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE-CCC
Q ss_conf 89972479989999999999996298138862-354
Q T0640 62 IVLPLDITDCTKADTEIKDIHQKYGAVDILVN-AAA 96 (250)
Q Consensus 62 ~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~-nAG 96 (250)
-.+++++ .++...+++..+....|++++||| |.|
T Consensus 46 ~~~q~~f-~~~~f~~vv~WL~lnrg~LsVLiHP~Tg 80 (104)
T PF08883_consen 46 WSFQVDF-PPEQFDAVVPWLMLNRGGLSVLIHPNTG 80 (104)
T ss_dssp EEEEEEE--HHHHHHH---HHHH-----EEEEEE--
T ss_pred CEEEEEC-CHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 3589955-9999999999999835995599868999
No 69
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 This is a family of largely hypothetical proteins of unknown function. ; PDB: 3gxh_A.
Probab=50.23 E-value=5.7 Score=16.41 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCH-H-----HHHHHHHHHHHHCCCCCCEEEEECCC--CCHHHHHHHHHHHHHHCCCCE
Q ss_conf 689999999986598699995798-9-----99999999998427887428997247--998999999999999629813
Q T0640 18 GIGAVIAAGLATDGYRVVLIARSK-Q-----NLEKVHDEIMRSNKHVQEPIVLPLDI--TDCTKADTEIKDIHQKYGAVD 89 (250)
Q Consensus 18 GiG~aia~~la~~G~~V~i~~r~~-~-----~l~~~~~~i~~~~~~~~~~~~~~~Dv--~~~~~v~~~~~~~~~~~g~iD 89 (250)
-+--+=...++++|++.+|.=|-. | ..++..+...+.|- ....++++- -+++.+..+.+.+.+.-++
T Consensus 14 Q~~~~di~~la~~GfktVIn~Rpd~E~~~qp~~~~~~~~a~~~GL---~y~~iPv~~~~~~~~~v~~f~~~l~~~~~P-- 88 (110)
T PF04273_consen 14 QPSPEDIAQLAAQGFKTVINNRPDGEDPGQPSSAEEREAAEAAGL---EYVHIPVDSGQITPEDVEAFAAALEELPGP-- 88 (110)
T ss_dssp ---HHHHHHHHH----EEEE-S-TTSTTS-T---T---HHHH------EEEE----TTS--HHHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCC---CEEEEECCCCCCCHHHHHHHHHHHHHCCCC--
T ss_conf 989999999997897399989989888899741999999998699---289951378889999999999999848999--
Q ss_pred EEEECCCCCC
Q ss_conf 8862354445
Q T0640 90 ILVNAAAMFM 99 (250)
Q Consensus 90 ~lv~nAG~~~ 99 (250)
+|++|.-..+
T Consensus 89 VL~hCrsG~R 98 (110)
T PF04273_consen 89 VLAHCRSGTR 98 (110)
T ss_dssp EEEE-SSSHH
T ss_pred EEEECCCCHH
T ss_conf 9998999802
No 70
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2gqf_A 2i0z_A.
Probab=49.76 E-value=2.6 Score=18.64 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=27.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Q ss_conf 7899965985689999999986598699995798999999
Q T0640 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKV 47 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~ 47 (250)
+|+||=||.+|+=. |..+++.|.+|++..|+..-.+++
T Consensus 2 dviIIGgGaAGl~A--Ai~aa~~G~~V~ilEk~~~~GkKi 39 (409)
T PF03486_consen 2 DVIIIGGGAAGLMA--AITAARNGLSVIILEKNPKLGKKI 39 (409)
T ss_dssp SEEEE-------CC--CHHHHH----EEEE--------HH
T ss_pred CEEEECCCHHHHHH--HHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 39999977999999--999973899489996886545555
No 71
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species . This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport; PDB: 1zp0_A 1zoy_A 1nek_A 1nen_A 2acz_A 1chu_A 1knr_A 1knp_A 2e5v_B 1y0p_A ....
Probab=49.46 E-value=5.9 Score=16.33 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=22.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Q ss_conf 8999659856899999999865986999957989
Q T0640 9 LAIITGASQGIGAVIAAGLATDGYRVVLIARSKQ 42 (250)
Q Consensus 9 v~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~ 42 (250)
|+|| |+ +.=|...|.++++.|.+|+++.+...
T Consensus 2 VlVV-G~-G~AGl~AA~~Aae~G~~Vilvek~~~ 33 (421)
T PF00890_consen 2 VLVV-GG-GLAGLAAALAAAEAGAKVILVEKGPE 33 (421)
T ss_dssp EEEE---------HHHHHHHHCST-EEEEESSSG
T ss_pred EEEE-CC-CHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 8999-98-79999999999866998999984675
No 72
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase () (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD^+ + H_2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase () catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP . NADPH + guanosine 5-phosphate = NADP^+ + inosine 5-phosphate + NH_3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity; PDB: 2cu0_A 1ak5_A 1mew_A 1pvn_C 1me7_A 1lrt_B 1meh_A 1me9_A 1me8_A 1mei_A ....
Probab=49.22 E-value=6 Score=16.31 Aligned_cols=132 Identities=12% Similarity=0.156 Sum_probs=54.7
Q ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEEC-CHHHHHHHHHHHHHHCC-----CCCCEE-EEECCCCCHHHHHHHHHH
Q ss_conf 8999659856-899999999865986999957-98999999999998427-----887428-997247998999999999
Q T0640 9 LAIITGASQG-IGAVIAAGLATDGYRVVLIAR-SKQNLEKVHDEIMRSNK-----HVQEPI-VLPLDITDCTKADTEIKD 80 (250)
Q Consensus 9 v~lVtGas~G-iG~aia~~la~~G~~V~i~~r-~~~~l~~~~~~i~~~~~-----~~~~~~-~~~~Dv~~~~~v~~~~~~ 80 (250)
+=+|.-.... ....+|.++++.|.--+|.-- ..+...+..+.+++..+ ...... ...+-+.+ +. .+..+.
T Consensus 38 iPivss~MDtVte~~mAiama~~GglgVih~~~~~~~q~~~v~~vk~~~~~a~~d~~~~l~V~aavg~~~-~~-~~r~~~ 115 (351)
T PF00478_consen 38 IPIVSSPMDTVTESRMAIAMARLGGLGVIHRNMSIEEQAEEVKKVKRFYPNASKDEKGRLRVGAAVGTSE-DD-LERAEA 115 (351)
T ss_dssp SSEEE-SSTTT-SHHHHHHHHHTT-EEEEESSSGHHHHHHHHHHHHTHHTTHHBHTTSGBCEEEEE-TTT-HH-HHHHHH
T ss_pred CCEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCH-HH-HHHHHH
T ss_conf 9778279756488999999997698789966776300000078887540020010005777999978787-89-999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH-HHHHHH-HHCCCCCHHHHHHCCCCEEECCC
Q ss_conf 99962981388623544456532000123445443-321122-20000000011000112131133
Q T0640 81 IHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIME-INVIAQ-YGILKTVTEIMKVQKNGYIFNVA 144 (250)
Q Consensus 81 ~~~~~g~iD~lv~nAG~~~~~~~~~~~e~~~~~~~-vNl~~~-~~~~~~~~~~l~~~~~G~Iv~is 144 (250)
+.+ -.+|+++--..........+..+.+.+.+. +.+.+- +-....+..++...-.+-.|-++
T Consensus 116 l~~--agvD~iviD~ahg~s~~v~~~i~~ik~~~p~v~ViaGNV~T~~~a~~Li~aGAd~vkVGiG 179 (351)
T PF00478_consen 116 LVE--AGVDVIVIDSAHGHSEHVIDMIKKIKKAFPDVPVIAGNVATYEGALDLIRAGADGVKVGIG 179 (351)
T ss_dssp HHH--CT-SEEEE--S---BHHHHHHHHHHHHHSTTSEEEE-E--SHHHHHHHHHS--SEEEE---
T ss_pred HHH--CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 987--7998999978875578999999999976799749856717899999999759999997734
No 73
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex; PDB: 2ate_A 1d7a_A 2nsh_A 1qcz_A 2nsl_A 2nsj_A 1u11_A 2fw7_B 2fw9_B 2fwa_B ....
Probab=47.90 E-value=6.2 Score=16.17 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 998999999999999629813886235444
Q T0640 69 TDCTKADTEIKDIHQKYGAVDILVNAAAMF 98 (250)
Q Consensus 69 ~~~~~v~~~~~~~~~~~g~iD~lv~nAG~~ 98 (250)
+.++.+.+++++..+ -.++++|..||..
T Consensus 39 Rtp~~l~~~~~~~~~--~~~~viIa~AG~a 66 (150)
T PF00731_consen 39 RTPERLLEYVKEAEK--RGAKVIIAVAGMA 66 (150)
T ss_dssp TSHHHHHHHHHHTTT-----CEEEEEE---
T ss_pred CCHHHHHHHHHHHHH--CCCEEEEEECCCC
T ss_conf 798999999999885--6980999967853
No 74
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA . ; PDB: 1yb2_A 1o54_A 2yvl_C 2pwy_A 2b25_B 1i9g_A.
Probab=47.32 E-value=6.4 Score=16.12 Aligned_cols=64 Identities=13% Similarity=0.206 Sum_probs=46.9
Q ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHH
Q ss_conf 778999659856-899999999865986999957989999999999984278874289972479989
Q T0640 7 KGLAIITGASQG-IGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCT 72 (250)
Q Consensus 7 ~kv~lVtGas~G-iG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~ 72 (250)
+..||=.|.+|| +-.++|+.....| +|+-..++++..+.+.+++...+.. ..+.+..-|+.+..
T Consensus 103 G~~VlEaGtGSGslT~~lar~V~p~G-~v~t~E~~e~~~~~A~~n~~~~gl~-~~v~~~~~Dv~~~g 167 (309)
T PF08704_consen 103 GSRVLEAGTGSGSLTHALARAVGPTG-KVYTFEFREERAKKARENFEEHGLD-DNVTVTHRDVCKEG 167 (309)
T ss_dssp T--EEEE------HHHHHHHHH------EEEEESSHHHHHHHHHHHHHCCHG-CCEEEEES-TTCS-
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCE-EEEEECCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCC
T ss_conf 89999927884099999999848964-8999768799999999999984899-84874524523336
No 75
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site . ; PDB: 1g8m_B 2iu0_B 1m9n_A 2b1g_C 2iu3_B 1oz0_A 1thz_B 2b1i_A 1pl0_D 1pkx_D ....
Probab=46.21 E-value=5.8 Score=16.40 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=34.8
Q ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHH----HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99999986598699995798999999999998427887428997247998999----9999999996298138862354
Q T0640 22 VIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKA----DTEIKDIHQKYGAVDILVNAAA 96 (250)
Q Consensus 22 aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v----~~~~~~~~~~~g~iD~lv~nAG 96 (250)
.+|+.|.+.|++++.+.-+. +-+...+-...++ .+.....+. .+..+.+.+ +.||.+||+..
T Consensus 4 ~~a~~l~~lG~~i~AT~gTa-------~~L~~~Gi~v~~v----~~~~~~~~~~~g~~~i~~~i~~--~~IdlVIn~~~ 69 (95)
T PF02142_consen 4 PLAKRLIELGFEIYATEGTA-------KFLREHGIPVVEV----VKKIGEGESPNGRVQILDLIKN--GKIDLVINTPD 69 (95)
T ss_dssp HHHHHHHHHHSEEEEEHHHH-------HHHHHCT--EEEC----EEECC---B-B--BHHHHHHTH--HTECEEEEE--
T ss_pred HHHHHHHHCCCEEEECCHHH-------HHHHHCCCCCEEE----EEECCCCCCCCCHHHHHHHHHC--CCEEEEEEECC
T ss_conf 99999998799999882899-------9999769986789----9864668778971899999983--98169998489
No 76
>PF00532 Peripla_BP_1: family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) , .; PDB: 3cs3_A 3g85_A 2qu7_A 3ctp_B 3e61_B 3hs3_B 2h0a_A 3d8u_B 3h5o_B 3e3m_B ....
Probab=44.86 E-value=6.9 Score=15.87 Aligned_cols=185 Identities=14% Similarity=0.177 Sum_probs=75.8
Q ss_pred CCEEEEECCC-----CHHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 7789996598-----568999999998659869999-5798999999999998427887428997247998999999999
Q T0640 7 KGLAIITGAS-----QGIGAVIAAGLATDGYRVVLI-ARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKD 80 (250)
Q Consensus 7 ~kv~lVtGas-----~GiG~aia~~la~~G~~V~i~-~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (250)
+++++|.--. ..+=..+.+++.+.|+.+++. ..+.+..++..+.+... ....+.+. ..... . ..+..
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~---~vDgIIi~-~~~~~--~-~~l~~ 74 (279)
T PF00532_consen 2 KKIGVIVPDLDNPFFSQLIEGIEQAAKEHGYDVIVINSNSDEDQEEQIENLISQ---KVDGIIIA-PMDPD--D-PALEK 74 (279)
T ss_dssp SEEEEEESSTTSHHHHHHHHHHHHHHHHTTTEEEEEEETTSHHHHHHHHHHHHT---TESEEEEE-SSSTT--H-HHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHC---CCCEEEEE-CCCCC--C-HHHHH
T ss_conf 999999488989999999999999999759999994799978999999999967---99999997-88322--0-36789
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCE-EECCCCHHHCCCCCCCHHHH
Q ss_conf 99962981388623544456532000123445443321122200000000110001121-31133111104667760668
Q T0640 81 IHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGY-IFNVASRAAKYGFADGGIYG 159 (250)
Q Consensus 81 ~~~~~g~iD~lv~nAG~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~~G~-Iv~isS~~~~~~~~~~~~Y~ 159 (250)
..+. | +-++..+...... ..+..+..-|..+. +.+..+|.++++.+ |++++.. ....
T Consensus 75 ~~~~-g-ipvV~~~~~~~~~-------~~~~~v~~d~~~~g----~~~~~~L~~~g~~~~I~~l~~~---------~~~~ 132 (279)
T PF00532_consen 75 LAKK-G-IPVVLVDRDSDSP-------DGVPSVGSDNYQAG----YLAAEYLLEQGHRRGIAFLGGP---------SSSS 132 (279)
T ss_dssp HHHS-T-SCEEEESSSSSSS-------SSSEEEEEEHHHHH----HHHHHHHHHHTHESCEEEEECC---------TTSH
T ss_pred HHHC-C-CEEEEEECCCCCC-------CEEEEECCCCHHHH----CCCEEHHHHCCCCCCCCCCCCC---------CCCC
T ss_conf 9973-9-7599982245564-------20467503415520----2214216541788641234554---------4443
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH----HHHHCCCCCC--CCCCCHHHHHHHHHHHH
Q ss_conf 889999999999999984179689985688706769----9964021353--44769899999999982
Q T0640 160 STKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDM----AKKAGTPFKD--EEMIQPDDLLNTIRCLL 222 (250)
Q Consensus 160 asKaal~~l~~~la~e~~~~gIrvn~I~PG~v~T~~----~~~~~~~~~~--~~~~~p~~va~~v~~ll 222 (250)
.++.-..+|-+.+... . ..++...+..+.-+.+- .++.....|. .-+..-+.+|..++..+
T Consensus 133 ~~~~R~~Gf~~al~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~i~ai~~~~d~~A~g~~~al 199 (279)
T PF00532_consen 133 TSRERYEGFKEALKEH-G-IELKIVDVAEGDNDREDAREAIEELLKSHPDIDAIFASNDEMAIGAIRAL 199 (279)
T ss_dssp HHHHHHHHHHHHHHHT-T-TTEEEEEEEESTSSSHHHHHHHHHHHHHSTTESEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-C-CCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 4889999999999984-9-96300145403322214678887631247688599988889999999999
No 77
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1vl5_B.
Probab=44.58 E-value=7 Score=15.85 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=46.6
Q ss_pred CCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 778999659856-8999999998659869999579899999999999842788742899724799899999999999962
Q T0640 7 KGLAIITGASQG-IGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY 85 (250)
Q Consensus 7 ~kv~lVtGas~G-iG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (250)
+..+|=.|++.| +...+++.+- .+.+|+.++.+++-|+...+.+.+.+.. ++..+++|..+..- .-
T Consensus 48 g~~vLDlacGTG~~~~~la~~~~-~~~~V~gvD~s~~ML~~a~~k~~~~~~~--~i~~~~~da~~lp~----------~d 114 (233)
T PF01209_consen 48 GDRVLDLACGTGDVAIELARRVG-PSGRVVGVDISEEMLEVAREKAKEAGLK--NIEFVQGDAEDLPF----------PD 114 (233)
T ss_dssp --EEEEET-----HHHHHGGGSS----EEEEEES-HHHHHHHHHHH--------SEEEE---TTS--S-----------T
T ss_pred CCEEEEECCCHHHHHHHHHHHCC-CCCEEEEEECCHHHHHHHHHHHHHCCCC--CEEEEEECHHHHCC----------CC
T ss_conf 79999918616999999999869-9774999989999999999988845998--46999807778267----------78
Q ss_pred CCCEEEEECCCC
Q ss_conf 981388623544
Q T0640 86 GAVDILVNAAAM 97 (250)
Q Consensus 86 g~iD~lv~nAG~ 97 (250)
...|++..+-|+
T Consensus 115 ~sfD~Vt~~fgl 126 (233)
T PF01209_consen 115 ESFDAVTISFGL 126 (233)
T ss_dssp T-BSEEEEES-G
T ss_pred CCCCEEEEECCC
T ss_conf 974879984640
No 78
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR013027 This entry describes both class I and class II oxidoreductases. FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase , , . Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently . Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) . Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase , thioredoxin reductase , mercuric reductase , lipoamide dehydrogenase , trypanothione reductase and NADH peroxidase have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication . ; PDB: 2tmd_A 1djq_A 1o95_B 1o94_A 1djn_A 1mok_C 2c3d_B 2c3c_B 1mo9_A 1xdi_B ....
Probab=43.71 E-value=7.2 Score=15.76 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=23.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 789996598568999999998659869999579
Q T0640 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARS 40 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~ 40 (250)
+++|| ||+ =-|.++|..|++.|++|.+..++
T Consensus 1 ~vvII-G~G-~aGl~~a~~l~~~~~~v~vie~~ 31 (201)
T PF07992_consen 1 DVVII-GGG-PAGLSAAYELLRLGYKVTVIERN 31 (201)
T ss_dssp EEEEE------HHHHHHHHHHHHTSEEEEEESS
T ss_pred CEEEE-CCC-HHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99999-989-99999999999779909999723
No 79
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 1s1m_B 2ad5_A 1vcn_A 1vco_A 1vcm_A 2vo1_B.
Probab=42.62 E-value=7.5 Score=15.65 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=23.6
Q ss_pred CEEEEECCC-CHHHHHHHHH-----HHHCCCEEEEEEC
Q ss_conf 789996598-5689999999-----9865986999957
Q T0640 8 GLAIITGAS-QGIGAVIAAG-----LATDGYRVVLIAR 39 (250)
Q Consensus 8 kv~lVtGas-~GiG~aia~~-----la~~G~~V~i~~r 39 (250)
|.++||||- ||+|+.++-+ |-.+|++|...-.
T Consensus 2 KyIfVTGGVvS~lGKGi~aaSig~lLk~~G~~V~~~K~ 39 (275)
T PF06418_consen 2 KYIFVTGGVVSSLGKGITAASIGRLLKSRGYKVTMQKI 39 (275)
T ss_dssp EEEEEE----S------HHHHHHHCCCT----EEEEEE
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 39999188402420689999999999978964899962
No 80
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families , , . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity .; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1s6y_A 1u8x_X 3fef_C 1obb_B 1vjt_A 1up6_D 1up4_G 1up7_H.
Probab=41.92 E-value=7.7 Score=15.58 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=45.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHHH---HHHHHCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 78999659856899999999865----9869999579899999999---9998427887428997247998999999999
Q T0640 8 GLAIITGASQGIGAVIAAGLATD----GYRVVLIARSKQNLEKVHD---EIMRSNKHVQEPIVLPLDITDCTKADTEIKD 80 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~----G~~V~i~~r~~~~l~~~~~---~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (250)
|+++|=|||.....-+-..+... +.+|++.+.|+++++.... .+.+..+..-++.. -+|.+ +++
T Consensus 1 KI~iIGaGS~~~~~~~~~~~~~~~~l~~~ei~L~Did~~RL~~v~~~~~~~~~~~~~~~~v~~----ttd~~---eAl-- 71 (183)
T PF02056_consen 1 KIAIIGAGSTYFPLLLKGDILRTPELPGSEIVLMDIDEERLEIVEKLARRLIEEAGADLKVEA----TTDRR---EAL-- 71 (183)
T ss_dssp EEEEE----CCHHHHHHHHHCTTTTS-CEEEEEE-SSHHHHHHHHHHHHHHHHHHTTTSEEEE----ESSHH---HHH--
T ss_pred CEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEE----ECCHH---HHH--
T ss_conf 989999863332999999996284589788999769999999999999999985099869999----68999---985--
Q ss_pred HHHHCCCCEEEEECCCC
Q ss_conf 99962981388623544
Q T0640 81 IHQKYGAVDILVNAAAM 97 (250)
Q Consensus 81 ~~~~~g~iD~lv~nAG~ 97 (250)
-.-|.+|+..-+
T Consensus 72 -----~gADfVi~~irv 83 (183)
T PF02056_consen 72 -----KGADFVINQIRV 83 (183)
T ss_dssp -----TTESEEEE----
T ss_pred -----CCCCEEEEEEEE
T ss_conf -----799999995533
No 81
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport . The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure .; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 2r8r_A.
Probab=41.80 E-value=7.7 Score=15.57 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=32.2
Q ss_pred CCCCEEEEECCCCHHHHHH-----HHHHHHCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 5877899965985689999-----99998659869999579899999999999
Q T0640 5 KQKGLAIITGASQGIGAVI-----AAGLATDGYRVVLIARSKQNLEKVHDEIM 52 (250)
Q Consensus 5 ~~~kv~lVtGas~GiG~ai-----a~~la~~G~~V~i~~r~~~~l~~~~~~i~ 52 (250)
.+||.=|-.|++.|.|+.. |+.+.++|..|++.......=.++...+.
T Consensus 2 ~rGrLkIflG~apGVGKTy~ML~~A~~l~~~G~DVViG~vEtHgR~eT~~l~~ 54 (211)
T PF02702_consen 2 KRGRLKIFLGYAPGVGKTYAMLEEAHRLKKQGVDVVIGYVETHGRPETEALLE 54 (211)
T ss_dssp ----EEEEE--------HHHHHHHHHHHHH----EEB--------HHHHHHH-
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHC
T ss_conf 97507999536998768999999999999789957999954899789999876
No 82
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1fq0_B 1eun_C 1fwr_B 1eua_C 2c0a_C 1wbh_C 1wau_A 1mxs_A 2v82_A 2v81_A ....
Probab=41.76 E-value=7.7 Score=15.57 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=39.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 778999659856899999999865986-99995798999999999998427887428997247998999999999
Q T0640 7 KGLAIITGASQGIGAVIAAGLATDGYR-VVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKD 80 (250)
Q Consensus 7 ~kv~lVtGas~GiG~aia~~la~~G~~-V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (250)
+=+++|.+-+..-...+++.|.+.|.+ +=++-|++..+ +..+.+.+..+ +...=..-|.+.++++++++.
T Consensus 9 ~ii~Vir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~-~~I~~l~~~~p---~~~iGAGTV~~~~~~~~a~~a 79 (196)
T PF01081_consen 9 KIIPVIRGDDAEDALPIAEALIEGGIRVIEITLRTPNAL-EAIEALRKEYP---DLLIGAGTVLTAEQAEAAIDA 79 (196)
T ss_dssp TBEEEE--SSGGGHHHHHHHHHH----BEEE-TTSTTHH-HHHHHHHHHHT---TSBEEE-B--SHHHHHHHHH-
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH-HHHHHHHHHCC---CCEEEEEECCCHHHHHHHHHC
T ss_conf 989999779999999999999987998899968983199-99999998789---978957828589999999985
No 83
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain has an alpha/beta fold that is a common motif found in several different cobalamin-binding proteins. Proteins containing this domain include: methionine synthase; the small subunit of glutamate mutase ; the alpha and beta subunits of methylmalonyl-CoA mutase; and mono- and tri-methylamine corrinoid proteins (MMCP and TCP, respectively) . In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) . The core structure of the cobalamin domain consists of 5 parallel beta-sheets, surrounded by 4-5 alpha helices in three layers, alpha/beta/alpha . The fold of the domain resembles that of the nucleotide-binding proteins (a Rossman fold). Upon binding B12, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. ; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1be1_A 1id8_A 1fmf_A 1ccw_C 1i9c_A 1cb7_A 1b1a_A 2i2x_B 1y80_A 3bul_A ....
Probab=39.56 E-value=8.3 Score=15.35 Aligned_cols=72 Identities=14% Similarity=0.262 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 5689999999986-5986999957989999999999984278874289972-47998999999999999629813886
Q T0640 17 QGIGAVIAAGLAT-DGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPL-DITDCTKADTEIKDIHQKYGAVDILV 92 (250)
Q Consensus 17 ~GiG~aia~~la~-~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~-Dv~~~~~v~~~~~~~~~~~g~iD~lv 92 (250)
-.+|......+++ +|++|.+.+-+.+. +++.+.+.+..+ ++..+.+ --.......++.+.+++....+-+++
T Consensus 13 ~~lgl~~la~~l~~~G~~v~~l~~~~~~-~~~~~~~~~~~p---d~v~iS~~~~~~~~~~~~l~~~~k~~~p~~~ii~ 86 (121)
T PF02310_consen 13 HPLGLLYLAAYLREAGFEVDILDANASM-EDLVAAIRAERP---DVVGISVTYTPQIEDAKRLAREIKRRNPDIKIIV 86 (121)
T ss_dssp T----HHHHHHHHHGT-EEEEE-CCE-H-HHHHHHHHHHTE---SEEEEEESSCTCCCHHHHHHHHHHC-GTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCH-HHHHHHHHHCCC---CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 4099999999998789969997998998-999999997599---8999984786849999999999981696987999
No 84
>PF01946 Thi4: Thi4 family; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process; PDB: 2gjc_B 1rp0_B 2gmh_B 2gmj_A.
Probab=39.36 E-value=8.4 Score=15.33 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Q ss_conf 8778999659856899999999865986999957989
Q T0640 6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQ 42 (250)
Q Consensus 6 ~~kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~ 42 (250)
+--|++|=+|.+|+ +.|..|+++|.+|.+..++..
T Consensus 17 ~~DVvIVGaG~aGL--~AA~~la~~g~kV~viE~~~~ 51 (230)
T PF01946_consen 17 EVDVVIVGAGPAGL--AAAYYLARAGLKVLVIERRSS 51 (230)
T ss_dssp EESEEEE---------HHHHHHHHHTS-EEEEESSS-
T ss_pred CCCEEEECCCHHHH--HHHHHHHHCCCEEEEEECCCC
T ss_conf 58989999778899--999999978995999967998
No 85
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=38.91 E-value=8.5 Score=15.28 Aligned_cols=34 Identities=35% Similarity=0.535 Sum_probs=23.7
Q ss_pred CCEEEEECCCCHH----------HHHHHHHHHHCCCEEEEEECCHH
Q ss_conf 7789996598568----------99999999865986999957989
Q T0640 7 KGLAIITGASQGI----------GAVIAAGLATDGYRVVLIARSKQ 42 (250)
Q Consensus 7 ~kv~lVtGas~Gi----------G~aia~~la~~G~~V~i~~r~~~ 42 (250)
+||++| |++|| -..++..+.++|+++.+.+|+..
T Consensus 2 kkIaii--GtrGiPa~yGGfEt~ve~L~~~l~~~g~~~~V~c~~~~ 45 (185)
T PF09314_consen 2 KKIAII--GTRGIPARYGGFETFVEELAPRLVNRGIKVTVYCRSRY 45 (185)
T ss_pred CEEEEE--ECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 669999--78888853472999999999999857960999977798
No 86
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation, 0005737 cytoplasm; PDB: 3grz_A 1orh_A 1or8_A 1ori_A 1g6q_3 1f3l_A 2fyt_A 1ne2_B 2nxe_A 3cjq_G ....
Probab=38.44 E-value=8.7 Score=15.24 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=6.7
Q ss_pred HHHHHHHCCC-EEEEEE
Q ss_conf 9999986598-699995
Q T0640 23 IAAGLATDGY-RVVLIA 38 (250)
Q Consensus 23 ia~~la~~G~-~V~i~~ 38 (250)
++..|.+.|+ -|.+-+
T Consensus 17 vs~~L~e~g~~gv~i~d 33 (295)
T PF06325_consen 17 VSDILEELGASGVAIED 33 (295)
T ss_dssp -----------------
T ss_pred CCCHHHHCCCCEEEEEC
T ss_conf 12115535996699972
No 87
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=38.12 E-value=8.8 Score=15.20 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Q ss_conf 999999998659869999579899999999
Q T0640 20 GAVIAAGLATDGYRVVLIARSKQNLEKVHD 49 (250)
Q Consensus 20 G~aia~~la~~G~~V~i~~r~~~~l~~~~~ 49 (250)
=+.+.++|-++|+.|++++|+-+.+.++.+
T Consensus 16 Fk~iI~eLe~~Ghev~itaR~~~~~~~LL~ 45 (335)
T PF04007_consen 16 FKPIIRELEKRGHEVLITARDYDETIELLD 45 (335)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCHHHHHH
T ss_conf 999999997389799999944553899999
No 88
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphhydryl compounds, including anticancer and immunosuppressive thiopurines .; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1pjz_A 3bgd_B 2gb4_A 3bgi_A 2h11_A 2bzg_A.
Probab=37.37 E-value=9 Score=15.13 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=31.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Q ss_conf 877899965985689999999986598699995798999999999
Q T0640 6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDE 50 (250)
Q Consensus 6 ~~kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~ 50 (250)
.+..|||-|.++|. -+..|+++|++|+.++.++..+++..++
T Consensus 37 ~~~rvLvPgCG~g~---D~~~La~~G~~VvGvDlS~~Ai~~~f~e 78 (216)
T PF05724_consen 37 PGGRVLVPGCGKGY---DMLWLASQGFDVVGVDLSETAIEQFFAE 78 (216)
T ss_dssp ---EEE-TT----T---HHHHHHH---EEE---S-HHHHHHHHHH
T ss_pred CCCEEEEECCCCHH---HHHHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf 88849993789748---7999995898389996569999999998
No 89
>PF04672 DUF574: Protein of unknown function (DUF574); InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 2qe6_A 3go4_A 3giw_A.
Probab=37.17 E-value=9.1 Score=15.11 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=75.0
Q ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCC--EEEEECCCCCHHHHHH--HHHHHHHHCCCCEEEEECC
Q ss_conf 99999999865986999957989999999999984278874--2899724799899999--9999999629813886235
Q T0640 20 GAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQE--PIVLPLDITDCTKADT--EIKDIHQKYGAVDILVNAA 95 (250)
Q Consensus 20 G~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~--~~~~~~Dv~~~~~v~~--~~~~~~~~~g~iD~lv~nA 95 (250)
--++|++.+- .++|+-++.+.--+.-...-+ ....+ ..++++|+++++.+-+ .+.++.+---++-++.+
T Consensus 85 vHevAq~~~P-~aRVVYVD~DPvvlaH~raLL----~~~~~g~t~~v~aDlrdp~~iL~~p~~~~~lD~~rPVAvll~-- 157 (267)
T PF04672_consen 85 VHEVAQRVAP-DARVVYVDNDPVVLAHARALL----ADNPNGRTAYVQADLRDPEAILAHPEVRRLLDFDRPVAVLLV-- 157 (267)
T ss_dssp HHHHHHHH-T-T-EEEEEESSHHHHHT--TTT----TT-TT--EEEEE--TT-HHHHHCSHHHHCC--TTS--EEEEE--
T ss_pred HHHHHHHCCC-CCEEEEECCCCHHHHHHHHHH----CCCCCCCEEEEECCCCCHHHHHCCHHHHHHCCCCCCEEEEEE--
T ss_conf 6168772199-845999779707899999983----689977469997867798998629888963687787465565--
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHCCCCCCCH-----HHHHHHHHHHHHHH
Q ss_conf 4445653200012344544332112220000000011000112131133111104667760-----66888999999999
Q T0640 96 AMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGG-----IYGSTKFALLGLAE 170 (250)
Q Consensus 96 G~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~~~~~~-----~Y~asKaal~~l~~ 170 (250)
|+...-+-++.... ++ +. ++..-..|+.+.+|-..... .|... .|. +.+.....|
T Consensus 158 ~vLhfv~D~~~p~~---iv-----------~~---l~dalapGSyL~ish~t~d~-~p~~~~~~~~~~~--~~~~~~~~R 217 (267)
T PF04672_consen 158 AVLHFVPDDDDPAG---IV-----------AR---LRDALAPGSYLVISHATADG-DPERVEAAEEVYR--QAGGPGRPR 217 (267)
T ss_dssp S-GGGS-CGCTHHH---HH-----------HH---HHCCS----EEEEEE-B-TT-SCCC-HHHHHHHH--HCT-----B
T ss_pred EECCCCCCCCCHHH---HH-----------HH---HHHHCCCCCEEEEEECCCCC-CHHHHHHHHHHHH--HCCCCCEEC
T ss_conf 11013785005999---99-----------99---99736997679998336888-8789999999997--179987515
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHH
Q ss_conf 999998417968998568870676999
Q T0640 171 SLYRELAPLGIRVTTLCPGWVNTDMAK 197 (250)
Q Consensus 171 ~la~e~~~~gIrvn~I~PG~v~T~~~~ 197 (250)
+- .|....==..-.+-||.+..+.++
T Consensus 218 s~-~ei~~ff~G~elvePGlV~~~~Wr 243 (267)
T PF04672_consen 218 SR-EEIAAFFDGLELVEPGLVPVPRWR 243 (267)
T ss_dssp -H-HHHHHCC---EE-----B-GGGSS
T ss_pred CH-HHHHHHHCCCEECCCCEEECCCCC
T ss_conf 99-999998289810799456324526
No 90
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 3ct4_B 1uoe_A 1oi3_B 1oi2_A 1uod_A 2iu4_A 2iu6_A 1un8_B 1un9_B.
Probab=36.51 E-value=4.8 Score=16.93 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=13.6
Q ss_pred CCCCEEEEECCCCHHHH
Q ss_conf 58778999659856899
Q T0640 5 KQKGLAIITGASQGIGA 21 (250)
Q Consensus 5 ~~~kv~lVtGas~GiG~ 21 (250)
.++||+||+||++|=--
T Consensus 26 ~~~kValIsGGGSGHEP 42 (325)
T PF02733_consen 26 DKDKVALISGGGSGHEP 42 (325)
T ss_dssp -TTS--EEE------TT
T ss_pred CCCCEEEEECCCCCCCC
T ss_conf 99967999437866664
No 91
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals .; GO: 0005524 ATP binding, 0006915 apoptosis; PDB: 2a5y_B 1z6t_B.
Probab=36.47 E-value=9.3 Score=15.04 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=25.4
Q ss_pred CCCCEEEEECCCCHHHHH-HHHHHHHC-------CCEEEEEECCHHHHHHHHHHH
Q ss_conf 587789996598568999-99999865-------986999957989999999999
Q T0640 5 KQKGLAIITGASQGIGAV-IAAGLATD-------GYRVVLIARSKQNLEKVHDEI 51 (250)
Q Consensus 5 ~~~kv~lVtGas~GiG~a-ia~~la~~-------G~~V~i~~r~~~~l~~~~~~i 51 (250)
.+.+++.|+|.+ |+|+. +|++++.. +..+++...+..........+
T Consensus 17 ~~~~~v~I~G~g-GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 70 (285)
T PF00931_consen 17 QNVRVVAIVGMG-GIGKTTLARQVANDQRVRNHFDGVIWVSLSSEPSLEDLLEQI 70 (285)
T ss_dssp SSSEEEEEE--------HHHHHHHHC-CCH---SSEEEEEE-----TTHHHHHHH
T ss_pred CCCEEEEEECCC-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 990799999088-098999847877623223321223443333332222334332
No 92
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria . The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.; PDB: 2w0m_A 1u9i_A 2gbl_A 2zts_B 2dr3_B.
Probab=33.25 E-value=10 Score=14.70 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCC----HHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHH
Q ss_conf 5877899965985----6899999999865-9869999579899999999999
Q T0640 5 KQKGLAIITGASQ----GIGAVIAAGLATD-GYRVVLIARSKQNLEKVHDEIM 52 (250)
Q Consensus 5 ~~~kv~lVtGas~----GiG~aia~~la~~-G~~V~i~~r~~~~l~~~~~~i~ 52 (250)
.++.+.+|+|..+ -++..++...+++ |-+++..+-.++ .+++.+...
T Consensus 17 p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~-~~~i~~~~~ 68 (225)
T PF06745_consen 17 PRGSVTLISGPPGSGKTTLALQFLANGAKQEGEKVLYISFEES-PEQIIRRMS 68 (225)
T ss_dssp BTT-EEEEE-------HHHHHHHHHHHHTTTT--EEEEESSS--HHHHHHHHH
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHH
T ss_conf 8990899992799885899999999999845994699994378-999999999
No 93
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid .; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ze8_C 2ze6_A 2ze7_A 2ze5_A.
Probab=33.02 E-value=11 Score=14.68 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=25.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCH
Q ss_conf 78999659856899999999865-98699995798
Q T0640 8 GLAIITGASQGIGAVIAAGLATD-GYRVVLIARSK 41 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~-G~~V~i~~r~~ 41 (250)
++.+|.|.+..=--+.|.+|+++ |+.|+..+|-.
T Consensus 2 ~~~lI~GpT~~GKT~~a~~LA~~tg~pVi~lDrvQ 36 (233)
T PF01745_consen 2 KVYLIFGPTGSGKTSLAIALAQQTGWPVISLDRVQ 36 (233)
T ss_dssp EEEEEE--TT---HHHHHHHHHH---EEEE--SGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 37999789888814999999999799669732134
No 94
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR016065 This is a family of conserved hypothetical proteins, which includes a putative methylase.; PDB: 1ws6_A 2esr_B 2fhp_A 2ift_A 2fpo_C.
Probab=32.87 E-value=11 Score=14.66 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=51.1
Q ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 58778999659856-89999999986598-69999579899999999999842788742899724799899999999999
Q T0640 5 KQKGLAIITGASQG-IGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
Q Consensus 5 ~~~kv~lVtGas~G-iG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
+++..+|=..|++| +|.+ .+.+|+ +|+.+..|.+..+-+.+.+...+... ++..+..|+.+ .+....
T Consensus 41 ~~g~~vLDLFaGsG~lglE----AlSRGA~~v~~VE~~~~a~~~i~~N~~~l~~~~-~~~v~~~d~~~------~l~~~~ 109 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLE----ALSRGAKSVVFVEKDPKAAKIIKENLKKLGLSN-RIRVIRGDAFR------ALLRLP 109 (183)
T ss_dssp HTC-EEEETT------HHH----HHHTT-SEEEEEES-HHHHHHHHHHHHHTT-GG-GEEEEESSHHH------HHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH----HHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCC-CEEEEECCHHH------HHHHHH
T ss_conf 5898799907864673999----997799789999799999999999999839986-48999887899------998741
Q ss_pred HHCCCCEEEEE
Q ss_conf 96298138862
Q T0640 83 QKYGAVDILVN 93 (250)
Q Consensus 83 ~~~g~iD~lv~ 93 (250)
..-.+.|+++.
T Consensus 110 ~~~~~fDiVfl 120 (183)
T PF03602_consen 110 KKGEPFDIVFL 120 (183)
T ss_dssp HCT--EEEEEE
T ss_pred CCCCCEEEEEE
T ss_conf 44898079998
No 95
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP . A member of this family may also exist in Treponema denticola .; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0030700 glycine reductase complex
Probab=32.58 E-value=11 Score=14.63 Aligned_cols=65 Identities=31% Similarity=0.480 Sum_probs=42.4
Q ss_pred CCCCEEEEECCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEE----EECCCCCHHHHHHHHH
Q ss_conf 587789996598568-99999999865986999957989999999999984278874289----9724799899999999
Q T0640 5 KQKGLAIITGASQGI-GAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIV----LPLDITDCTKADTEIK 79 (250)
Q Consensus 5 ~~~kv~lVtGas~Gi-G~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~----~~~Dv~~~~~v~~~~~ 79 (250)
+++|-++|.|-..|| |-|+..-+...|+.|+..+- +.+. =..|+.|+..++
T Consensus 3 l~~kkviiiGdRDGiPgpAi~~c~~~~gaevvfs~T--------------------ECfVctaAGAMDLEnQ~rvk---- 58 (150)
T PF04723_consen 3 LKGKKVIIIGDRDGIPGPAIEECVKTAGAEVVFSST--------------------ECFVCTAAGAMDLENQKRVK---- 58 (150)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEE--------------------EEEEEECCCCCCHHHHHHHH----
T ss_conf 678679998168899857899998546956999632--------------------56776064423468789999----
Q ss_pred HHHHHCCCCEEEEE
Q ss_conf 99996298138862
Q T0640 80 DIHQKYGAVDILVN 93 (250)
Q Consensus 80 ~~~~~~g~iD~lv~ 93 (250)
++.+++|+=+++|-
T Consensus 59 ~~aEk~g~en~vV~ 72 (150)
T PF04723_consen 59 DLAEKYGAENLVVL 72 (150)
T ss_pred HHHHHCCCCCEEEE
T ss_conf 99986497548999
No 96
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 1gso_A 1vkz_B 2qk4_A 2ys6_A 2yrw_A 2ys7_A 2yrx_A 2ip4_B 2yw2_A 2yya_A ....
Probab=31.99 E-value=11 Score=14.57 Aligned_cols=89 Identities=18% Similarity=0.185 Sum_probs=49.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 789996598568999999998659--869999579899999999999842788742899724799899999999999962
Q T0640 8 GLAIITGASQGIGAVIAAGLATDG--YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY 85 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G--~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (250)
||.+| ||+|=-.|+|.+|.+.. .+|+..--|..- ..-...+..|.+|.+.+.++ +.++
T Consensus 2 kVLvi--GsGgREHAla~~l~~S~~v~~v~~apGN~G~--------------~~~~~~~~i~~~d~~~i~~~---a~~~- 61 (100)
T PF02844_consen 2 KVLVI--GSGGREHALAWALAQSPRVDEVYVAPGNPGT--------------ARLAENVNIDITDIEEIVDF---AKEN- 61 (100)
T ss_dssp EEEE--------HHHHHHHHTTCTTEEEEEEE--------------------TTTSEEE-S-TT-HHHHHHH---HHHT-
T ss_pred EEEEE--CCCHHHHHHHHHHHCCCCCCEEEEECCCHHH--------------HHHCCCCCCCCCCHHHHHHH---HHHC-
T ss_conf 79998--7885999999999629987889992898477--------------76342117896899999999---9984-
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 981388623544456532000123445443321122
Q T0640 86 GAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQ 121 (250)
Q Consensus 86 g~iD~lv~nAG~~~~~~~~~~~e~~~~~~~vNl~~~ 121 (250)
.+|.+| +.+..++..-.-|+.+-..+.++||
T Consensus 62 -~idlvv----vGPE~pL~~Gl~D~l~~~gi~vfGP 92 (100)
T PF02844_consen 62 -NIDLVV----VGPEAPLVAGLADALRAAGIPVFGP 92 (100)
T ss_dssp -TESEEE-------HHHHH---HHHHHH---TEE--
T ss_pred -CCCEEE----ECCHHHHHHHHHHHHHHCCCCEECC
T ss_conf -999899----8961888876799998789966893
No 97
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction .; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=30.95 E-value=11 Score=14.46 Aligned_cols=46 Identities=20% Similarity=0.453 Sum_probs=32.3
Q ss_pred CCCCCEEEEECCCCHHHHHH------HHHHHHCCCEEEEEECCHHHHHHHHHH
Q ss_conf 55877899965985689999------999986598699995798999999999
Q T0640 4 EKQKGLAIITGASQGIGAVI------AAGLATDGYRVVLIARSKQNLEKVHDE 50 (250)
Q Consensus 4 ~~~~kv~lVtGas~GiG~ai------a~~la~~G~~V~i~~r~~~~l~~~~~~ 50 (250)
|.....-+|. |.+|||+.. .+.|++.|-+.+-+-|....+++.+++
T Consensus 14 syd~~~~~vi-G~RgvGKtfa~~~~~~k~~~~~geqfiYLRr~~~El~~~~n~ 65 (333)
T PF05894_consen 14 SYDRILNFVI-GARGVGKTFAMKKKLIKDFIKNGEQFIYLRRYKPELDKLKNE 65 (333)
T ss_pred HHCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
T ss_conf 0161248898-156545246777889999986396699997342788887667
No 98
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows , a high degree of sequence conservation. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 1qxo_D 1ztb_A 2o11_A 2qhf_A 2o12_A 2g85_A 1q1l_D 1r52_D 1r53_A 1um0_B ....
Probab=30.23 E-value=12 Score=14.38 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCHHH--------HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC---
Q ss_conf 899999999865-9869999579899--------9999999998427887428997247998999999999999629---
Q T0640 19 IGAVIAAGLATD-GYRVVLIARSKQN--------LEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYG--- 86 (250)
Q Consensus 19 iG~aia~~la~~-G~~V~i~~r~~~~--------l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g--- 86 (250)
..-++|++|+++ |.+|.-.-..... .+...+.+.+.. +...|-.-.+.+.+.++++.++-.
T Consensus 127 aaGaiAk~~L~~~gI~i~s~v~~IG~i~~~~~~~~~~~~~~~~~~~-------~~~~d~~~~~~m~~~I~~ak~~gDSlG 199 (346)
T PF01264_consen 127 AAGAIAKQLLEEFGIEIVSHVKSIGGIEDEEDDPFEEDFEKIEESP-------VRCPDPEAEEKMEELIDEAKKEGDSLG 199 (346)
T ss_dssp H---HHHHHHHTTT-EEEEEESB----B-CGHHHHHHHHHHHHHST-------T-BSSCCCHHHHHHHHHHHHHTT--B-
T ss_pred HHHHHHHHHHHHCCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHCCC-------CCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999876989998457309883566775377776543198-------778898999999999999996389985
Q ss_pred -CCEEEEECCCCCCCCCCCHHHHH--HHHHHHHHH
Q ss_conf -81388623544456532000123--445443321
Q T0640 87 -AVDILVNAAAMFMDGSLSEPVDN--FRKIMEINV 118 (250)
Q Consensus 87 -~iD~lv~nAG~~~~~~~~~~~e~--~~~~~~vNl 118 (250)
-+.+.+.|.-.....++-+.+|. -+.+|.++.
T Consensus 200 Give~~~~gvP~GLG~p~fdkLda~La~A~mSIpA 234 (346)
T PF01264_consen 200 GIVEVVATGVPAGLGSPVFDKLDARLAQALMSIPA 234 (346)
T ss_dssp -EEEEEEES-------TTCSSHHHHHHHHHHTSTT
T ss_pred EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 49999998889877986436047899998618665
No 99
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 2yvu_A 3cr8_A 1m8p_C 1i2d_B 2gks_B 1m7g_D 1m7h_C 1d6j_A 3cr7_B 2pey_B ....
Probab=29.12 E-value=12 Score=14.26 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=27.6
Q ss_pred CCCEEEEECCC----CHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 87789996598----568999999998659869999579
Q T0640 6 QKGLAIITGAS----QGIGAVIAAGLATDGYRVVLIARS 40 (250)
Q Consensus 6 ~~kv~lVtGas----~GiG~aia~~la~~G~~V~i~~r~ 40 (250)
++.|+.+||-+ +-|++++.++|.+.|.++++.+-+
T Consensus 1 ~g~vIw~tGlsGsGKsTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 1 KGFVIWFTGLSGSGKSTLARALEKRLFERGRPVYLLDGD 39 (156)
T ss_dssp ---EEEEE-ETT---HHHHHHHHHHHHHTT--EEEE---
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECH
T ss_conf 997999889799999999999999999849998796387
No 100
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases . Please see the following relevant references: , .; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing
Probab=28.88 E-value=12 Score=14.23 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHH
Q ss_conf 8568999999998659869999579899
Q T0640 16 SQGIGAVIAAGLATDGYRVVLIARSKQN 43 (250)
Q Consensus 16 s~GiG~aia~~la~~G~~V~i~~r~~~~ 43 (250)
-..+=+++...|++.+..|++.+||-..
T Consensus 40 ~~~f~~~~l~~L~~~~~~vViaDRNNh~ 67 (169)
T PF08303_consen 40 KPKFIKAVLELLAKAGHPVVIADRNNHQ 67 (169)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 6799999999998579977998177732
No 101
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes . One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway , . PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains ). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP , as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react . Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise . Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 1zxx_A 2pfk_B 1pfk_B 1mto_B 6pfk_D 4pfk_A 3pfk_A 3hno_C 1kzh_B 2f48_A ....
Probab=27.59 E-value=13 Score=14.09 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=47.4
Q ss_pred CCEEEEECCC--CHHH---HHHHHHHHHCCCEEEEEECCHHHHH-----H----HHHHHHHHCCCCCCEEEEECCCCCHH
Q ss_conf 7789996598--5689---9999999865986999957989999-----9----99999984278874289972479989
Q T0640 7 KGLAIITGAS--QGIG---AVIAAGLATDGYRVVLIARSKQNLE-----K----VHDEIMRSNKHVQEPIVLPLDITDCT 72 (250)
Q Consensus 7 ~kv~lVtGas--~GiG---~aia~~la~~G~~V~i~~r~~~~l~-----~----~~~~i~~~~~~~~~~~~~~~Dv~~~~ 72 (250)
||++++|.|+ .|+= +++++...++|++|+....=-+.+- + -.+.+...++..-.. .-.-+..+++
T Consensus 1 KrI~IltsGG~apGmNaai~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~Lgt-~R~~~~~~~~ 79 (282)
T PF00365_consen 1 KRIGILTSGGDAPGMNAAIRGVVRYAIKRGIEVYGIRNGYEGLLNGDIIELTWEDVSGILNQGGTILGT-SRYKPFKDEE 79 (282)
T ss_dssp -EE--EE-----SSHHHHHHHHHHHHHHCTSEE--EEE-----TT-T-EEB-CGGHTTGTT----TTTB----GGGGSHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHEEEECCHHHHHHHHHCCCCEEEC-CCCCCCCCHH
T ss_conf 939999058883768899999999998679889999835111000207676232488898367876514-7898656878
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9999999999962981388623544
Q T0640 73 KADTEIKDIHQKYGAVDILVNAAAM 97 (250)
Q Consensus 73 ~v~~~~~~~~~~~g~iD~lv~nAG~ 97 (250)
..+++++.+.+. .||.||...|.
T Consensus 80 ~~~~~~~~l~~~--~Id~Li~IGGd 102 (282)
T PF00365_consen 80 GRKKAAENLKKL--GIDALIVIGGD 102 (282)
T ss_dssp HHHHHHHHHHHT--T-SEEEEE---
T ss_pred HHHHHHHHHHHC--CCCEEEEECCH
T ss_conf 999999999986--99999997885
No 102
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis . The NifX protein shows sequence similarity with the C-terminus of NifB , as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet .; PDB: 2re2_B 1p90_A 2yx6_C 1t3v_A 1o13_A 2qtd_A 1eo1_A 1rdu_A.
Probab=27.14 E-value=13 Score=14.04 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCHH
Q ss_conf 59856899999999865986999957989
Q T0640 14 GASQGIGAVIAAGLATDGYRVVLIARSKQ 42 (250)
Q Consensus 14 Gas~GiG~aia~~la~~G~~V~i~~r~~~ 42 (250)
....+=|..++..|..+|..++++..-.+
T Consensus 36 ~~~~~~~~~~~~~l~~~~v~~vi~~~iG~ 64 (94)
T PF02579_consen 36 PEPGGGGGKLAELLKEEGVDVVICGGIGE 64 (94)
T ss_dssp GSSCC-SSHHHHHHHHTT-SEEEES---H
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEECCCCH
T ss_conf 77655633189999977997999857798
No 103
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This family of eukaryotic proteins has no characterised function. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.
Probab=26.77 E-value=13 Score=13.99 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=43.9
Q ss_pred CCCEEEEECCCCH-HHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHH
Q ss_conf 8778999659856-899999999865---986999957989999999999984278874289972479989
Q T0640 6 QKGLAIITGASQG-IGAVIAAGLATD---GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCT 72 (250)
Q Consensus 6 ~~kv~lVtGas~G-iG~aia~~la~~---G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~ 72 (250)
+....|=.|+++| +.+.++..+... ..++++++|...+++ ....+.+.... ..+.-+.+|+.|.+
T Consensus 18 ~~~~~vEfGaGkg~Ls~~l~~~l~~~~~~~~~~vlIDr~~~R~K-~D~~~~~~~~~-~~~~Rlr~DI~Dl~ 86 (259)
T PF05206_consen 18 NDSCIVEFGAGKGYLSRWLADCLQEQKKSNPKFVLIDRASNRLK-FDRKIRKDESE-PPLERLRIDIKDLD 86 (259)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH-HHHHHHHHCCC-CCCEEEEECHHHCC
T ss_conf 89889997897269999999998643567871899823422678-88987641134-43137882156516
No 104
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria.; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1yxy_B 1y0e_A.
Probab=25.67 E-value=14 Score=13.86 Aligned_cols=15 Identities=20% Similarity=0.435 Sum_probs=9.0
Q ss_pred CCCEEEEECCCCCCCHH
Q ss_conf 79689985688706769
Q T0640 179 LGIRVTTLCPGWVNTDM 195 (250)
Q Consensus 179 ~gIrvn~I~PG~v~T~~ 195 (250)
.++. .|+-|.+.||-
T Consensus 143 ~~~p--vIaEG~i~tPe 157 (192)
T PF04131_consen 143 AGVP--VIAEGRIHTPE 157 (192)
T ss_dssp --SE--EEE-----SHH
T ss_pred CCCC--EEEECCCCCHH
T ss_conf 7992--99847989999
No 105
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325)
Probab=25.22 E-value=14 Score=13.81 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=53.3
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 99965985689999999986598699995798999999999998427887428997247998999999999999629813
Q T0640 10 AIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVD 89 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 89 (250)
++|.||-...-..+-..+-+.|.+.+..+|+... ++-...|...-.. .+...+..|.-+-.....+-+.. ++.+..=
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~-~~~~~~l~~~i~~-aD~VI~~td~vsH~~~~~~k~~a-k~~~~p~ 78 (97)
T PF10087_consen 2 VLIVGGRDDRERNYRRLLEKYGGKFIHHGRDGGF-EKKKSRLPSKIKR-ADLVIVFTDCVSHNAMWKAKKEA-KKYGIPI 78 (97)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCC-CCHHHHHHHHCCC-CCEEEEECCCCCHHHHHHHHHHH-HHHCCCE
T ss_conf 9999076042589999999869989999558887-5144656875589-99999980766979999999999-9839958
Q ss_pred EEEECCCC
Q ss_conf 88623544
Q T0640 90 ILVNAAAM 97 (250)
Q Consensus 90 ~lv~nAG~ 97 (250)
+..++.|.
T Consensus 79 ~~~~s~s~ 86 (97)
T PF10087_consen 79 VFSRSRSL 86 (97)
T ss_pred EEECCCCH
T ss_conf 99889888
No 106
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 2q6t_B 1q57_E 1e0j_F 1cr1_A 1e0k_F 1cr0_A 1cr2_A 1cr4_A 3bgw_E 3bh0_A ....
Probab=25.18 E-value=14 Score=13.81 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=66.1
Q ss_pred CCCCEEEEECCCCHHHHH-----HHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 587789996598568999-----99999865-986999957989999999999984278874289972479989999999
Q T0640 5 KQKGLAIITGASQGIGAV-----IAAGLATD-GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEI 78 (250)
Q Consensus 5 ~~~kv~lVtGas~GiG~a-----ia~~la~~-G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 78 (250)
++..-.+|.||..|.|+. ++..++.+ |.+|...+--.+. +++...+-........-.....++++ ++.+++.
T Consensus 16 ~~~G~l~vi~g~pg~GKT~~~~~i~~~~a~~~g~~v~~~SlEm~~-~~~~~R~~a~~s~v~~~~~~~~~~~~-~~~~~~~ 93 (185)
T PF03796_consen 16 LRPGELIVIGGRPGMGKTTFALNIALNAAKQHGKNVLYFSLEMSV-EELARRLLAAESGVSLKKIRRGDLSD-EEYERLQ 93 (185)
T ss_dssp --TT-EEEEEESTT-HHHHHHHHHHHHHHHTSSSEEEEEESSS-H-HHHHHHHHHHTTTSTCHHHHCCHCHT-TTHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCH-HHHHHHHHHHHHCCCHHHHCCCCCCH-HHHHHHH
T ss_conf 787857999846888816999999999999659869999577999-99999999997147787755699999-9999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHCCCCC--CCH
Q ss_conf 999996298138862354445653200012344544332112220000000011000112131133111104667--760
Q T0640 79 KDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFA--DGG 156 (250)
Q Consensus 79 ~~~~~~~g~iD~lv~nAG~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~~~--~~~ 156 (250)
+. .+++...++.|..- + .-+.+++... ++.++.+.+-.+|+|=...-..... ...
T Consensus 94 ~~-~~~l~~~~l~i~~~-----~--~~~~~~i~~~---------------~~~~~~~~~~~~ivIDyl~~~~~~~~~~~~ 150 (185)
T PF03796_consen 94 KA-ADKLSELPLFIDDD-----P--SLTIDEIRAK---------------IRRLKRKHGIDLIVIDYLQLMDSEGPRNDD 150 (185)
T ss_dssp HH-HHHCTTSEEEEEES-----S--S-BHHHHHHH---------------HHHHHHHC--EEEEEECGGGTBSS--SSST
T ss_pred HH-HHHHCCCEEEEECC-----C--CCCHHHHHHH---------------HHHHHHHCCCCEEEECCHHHCCCCCCCCCC
T ss_conf 99-98642860999768-----8--8569999999---------------999999749998998906863778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6688899999999999999841796899856
Q T0640 157 IYGSTKFALLGLAESLYRELAPLGIRVTTLC 187 (250)
Q Consensus 157 ~Y~asKaal~~l~~~la~e~~~~gIrvn~I~ 187 (250)
.+ ..+..+++.|..=-...+|.|.+++
T Consensus 151 ~~----~~i~~i~~~Lk~lA~~~~i~vi~~s 177 (185)
T PF03796_consen 151 RR----EEIGEISRRLKRLAKELNIPVIVLS 177 (185)
T ss_dssp CH----HHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HH----HHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 99----9999999999999998298199973
No 107
>PF10686 DUF2493: Protein of unknown function (DUF2493)
Probab=24.95 E-value=14 Score=13.78 Aligned_cols=16 Identities=13% Similarity=0.190 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHHHHC
Q ss_conf 9899999999999962
Q T0640 70 DCTKADTEIKDIHQKY 85 (250)
Q Consensus 70 ~~~~v~~~~~~~~~~~ 85 (250)
|.+-+.+.++++..++
T Consensus 16 D~~~i~~~Ld~~~~~~ 31 (71)
T PF10686_consen 16 DHELIWAALDKVHARH 31 (71)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 2899999999999877
No 108
>PF01175 Urocanase: Urocanase; InterPro: IPR000193 Urocanase (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H_2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD^+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD^+.; GO: 0016153 urocanate hydratase activity, 0006548 histidine catabolic process; PDB: 2fkn_B 1x87_B 1uwl_B 2v7g_B 1uwk_B 1w1u_A.
Probab=24.94 E-value=14 Score=13.78 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=48.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 55877899965985689999999986598699995798999999999998427887428997247998999999999999
Q T0640 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
Q Consensus 4 ~~~~kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
++++|+ ++|+|-+|+|-|--++---.|+-.+++..|++++++-. .+ ++.. .+ ..|.++.-+.+++..+
T Consensus 154 ~L~Gk~-~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~~R~---~~--gyld---~~---~~~Ldeal~~~~~a~~ 221 (546)
T PF01175_consen 154 DLAGKL-FLTAGLGGMGGAQPLAATMAGGVCICVEVDPSRIDKRL---EQ--GYLD---EV---TDDLDEALARAKEAKK 221 (546)
T ss_dssp -----E-EEE---------HHHHHHHT--EEEEE-S-HHHHHHHH---HT--TSSS---EE---ESSHHHHHHHHHHHHH
T ss_pred CCCCEE-EEECCCCCCCCCCHHHHHHCCCEEEEEEECHHHHHHHH---HC--CCCE---EE---CCCHHHHHHHHHHHHH
T ss_conf 977129-99517776552107899863862899997899999997---57--9720---57---2899999999999997
Q ss_pred HCCCCEE
Q ss_conf 6298138
Q T0640 84 KYGAVDI 90 (250)
Q Consensus 84 ~~g~iD~ 90 (250)
+--++.+
T Consensus 222 ~~~~~SI 228 (546)
T PF01175_consen 222 KKEPLSI 228 (546)
T ss_dssp TT---EE
T ss_pred CCCCEEE
T ss_conf 6996589
No 109
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases , . These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 FAD binding; PDB: 2jbv_B 1gpe_A 1gal_A 1cf3_A 1ijh_A 3b3r_A 2gew_A 1cc2_A 1b4v_A 1n4v_A ....
Probab=24.73 E-value=15 Score=13.75 Aligned_cols=28 Identities=43% Similarity=0.809 Sum_probs=19.4
Q ss_pred EEECCCCHHHHHHHHHHHHCC-CEEEEEEC
Q ss_conf 996598568999999998659-86999957
Q T0640 11 IITGASQGIGAVIAAGLATDG-YRVVLIAR 39 (250)
Q Consensus 11 lVtGas~GiG~aia~~la~~G-~~V~i~~r 39 (250)
||.|++-| |..+|.+|++.| .+|.++-+
T Consensus 4 IIVGsG~~-G~v~A~rLa~~g~~~VlvLEa 32 (298)
T PF00732_consen 4 IIVGSGAG-GGVVASRLAEAGGYSVLVLEA 32 (298)
T ss_dssp EEE--------HHHHHHTTSTTS-EEEEE-
T ss_pred EEECCCHH-HHHHHHHHHHCCCCEEEEEEC
T ss_conf 99897889-999999997688976999960
No 110
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases , , .; PDB: 3g2o_A 3g2p_B 3g2m_B 3g2q_B 1r8y_A 1r8x_B 1bhj_A 1d2c_B 2idj_B 1xva_B ....
Probab=24.47 E-value=15 Score=13.72 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
Q ss_conf 59856899999999865--98699995798999999999998427-8874289972479989999999999996298138
Q T0640 14 GASQGIGAVIAAGLATD--GYRVVLIARSKQNLEKVHDEIMRSNK-HVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDI 90 (250)
Q Consensus 14 Gas~GiG~aia~~la~~--G~~V~i~~r~~~~l~~~~~~i~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~ 90 (250)
|.+.| .....|+++ +.+++.++.+++.++...+++.+... ..........|..+.+.- ++.|+
T Consensus 4 GcG~G---~~~~~l~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~fD~ 69 (99)
T PF08242_consen 4 GCGTG---RLLIALLEQNPGAEVTGVDISPEMLEIARERLAQFGNQNIENVEFDQLDIFDQDPK-----------GSFDL 69 (99)
T ss_dssp T--------HHHHHHHHSSEEEEEEEESSHHHHHHHHHHHHTTTSHHHCTEEEEESSGGGHHHH-------------ESE
T ss_pred EECCC---HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHCCCC-----------CCCCE
T ss_conf 70687---89999998579988999989989999999997655654301112102441112569-----------99187
Q ss_pred EEEC
Q ss_conf 8623
Q T0640 91 LVNA 94 (250)
Q Consensus 91 lv~n 94 (250)
++.+
T Consensus 70 i~~~ 73 (99)
T PF08242_consen 70 IVCS 73 (99)
T ss_dssp EEEE
T ss_pred EEEC
T ss_conf 8774
No 111
>PF12146 Hydrolase_4: Putative lysophospholipase
Probab=24.45 E-value=15 Score=13.72 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCHHH--HHHHHHHHHCCCEEEEEECCH
Q ss_conf 877899965985689--999999986598699995798
Q T0640 6 QKGLAIITGASQGIG--AVIAAGLATDGYRVVLIARSK 41 (250)
Q Consensus 6 ~~kv~lVtGas~GiG--~aia~~la~~G~~V~i~~r~~ 41 (250)
+..|+++-|-+.-.+ ..+|+.|+++|+.|+..+...
T Consensus 16 ~~~vv~~HG~~~~~~~~~~~a~~l~~~G~~v~~~D~rG 53 (79)
T PF12146_consen 16 KATVVLVHGFGEHSGRYQELAEFLAEQGYAVFAFDLRG 53 (79)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 87999989886689999999999998899899978887
No 112
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 Bacterial glucose inhibited division protein A (gene gidA) is a protein of 70 Kd whose function is not yet known and whose sequence is highly conserved. It is evolutionary related to yeast hypothetical protein YGL236C, Caenorhabditis elegans hypothetical protein F52H3.2 and a Bacillus subtilis protein called gid (and which is different from B. subtilis gidA).; GO: 0050660 FAD binding, 0008033 tRNA processing; PDB: 2cul_A 3g5q_A 3g5r_A 3g5s_A 2zxi_A 2zxh_A 3cp8_D 3ces_C 3cp2_A.
Probab=23.76 E-value=15 Score=13.63 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=21.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Q ss_conf 78999659856899999999865986999957989
Q T0640 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQ 42 (250)
Q Consensus 8 kv~lVtGas~GiG~aia~~la~~G~~V~i~~r~~~ 42 (250)
+|++|=||-. |-+.|.++|+.|++|.+...+.+
T Consensus 1 DViVVGgG~A--G~eAA~aaAr~G~~v~Li~~~~~ 33 (392)
T PF01134_consen 1 DVIVVGGGHA--GCEAALAAARMGAKVLLITHNTD 33 (392)
T ss_dssp CEEEE---------HHHHHHHH----EEEEES-GG
T ss_pred CEEEECCCHH--HHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9899988759--99999999978997899965667
No 113
>PF02353 CMAS: Cyclopropane-fatty-acyl-phospholipid synthase; InterPro: IPR003333 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents cyclopropane-fatty-acyl-phospholipid synthase that is slosely related to methyltransferases. Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex .; GO: 0008825 cyclopropane-fatty-acyl-phospholipid synthase activity, 0008610 lipid biosynthetic process; PDB: 3hem_A 1kpi_A 1kph_A 1kpg_D 1kp9_A 1tpy_A 2fk7_A 3ha5_A 3ha3_A 3ha7_A ....
Probab=23.48 E-value=15 Score=13.60 Aligned_cols=61 Identities=20% Similarity=0.108 Sum_probs=38.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH
Q ss_conf 778999659856899999999865-98699995798999999999998427887428997247998
Q T0640 7 KGLAIITGASQGIGAVIAAGLATD-GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDC 71 (250)
Q Consensus 7 ~kv~lVtGas~GiG~aia~~la~~-G~~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~ 71 (250)
+.-+|=.|.+-| .++..++++ |++|..+..+++..+.+.+.+.+.+-. .++.+..+|..+.
T Consensus 63 G~~vLDiGCGwG---~~~~~~a~~~g~~v~GitlS~~Q~~~a~~~~~~~gl~-~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 63 GMRVLDIGCGWG---GLAIYAAERYGAKVTGITLSEEQAEYARERAAEAGLE-DRVEVRLCDYRDL 124 (273)
T ss_dssp --EEEE----------HHHHHHHHH--EEE--BS-HHHHHHHHHHHHCS-SS-S-B---B---TT-
T ss_pred CCEEEEECCCCH---HHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCC-CCCCEEECCHHHC
T ss_conf 998999789956---9999999980998999979999999999999877986-6410012564117
No 114
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape .; PDB: 1cbu_C 1c9k_C.
Probab=23.36 E-value=16 Score=13.58 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=62.0
Q ss_pred EEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 999659856899999999865-98699995798999999999998427-8874289972479989999999999996298
Q T0640 10 AIITGASQGIGAVIAAGLATD-GYRVVLIARSKQNLEKVHDEIMRSNK-HVQEPIVLPLDITDCTKADTEIKDIHQKYGA 87 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~la~~-G~~V~i~~r~~~~l~~~~~~i~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 87 (250)
++||||++.==.+.|++++.+ |.+++-++--...=++..+.|.+-.. .+.....+..- .++.+.+.. +..
T Consensus 1 ~lv~GG~rSGKS~~AE~la~~~~~~~~YiAT~~~~D~Em~~RI~~H~~~R~~~w~t~E~p----~~l~~~l~~----~~~ 72 (167)
T PF02283_consen 1 ILVTGGARSGKSAFAEQLAAQLGGRVVYIATAQAFDEEMQERIARHRARRPAGWTTIEEP----LDLAEALKE----LSK 72 (167)
T ss_dssp EEEE-------HHHHHHH-----SCEEEEESSHHHHHHHHHHHHHHH----TCEEEEE-S----S-GGGTS-T----TS-
T ss_pred CEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECH----HHHHHHHHH----CCC
T ss_conf 978378886679999999983389858998589899899999999998589997599732----109999973----489
Q ss_pred CE-EEEECCCCCCCCCCCHH---HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCHHHCCCCCCC
Q ss_conf 13-88623544456532000---1234454433211222000000001100011213113311110466776
Q T0640 88 VD-ILVNAAAMFMDGSLSEP---VDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADG 155 (250)
Q Consensus 88 iD-~lv~nAG~~~~~~~~~~---~e~~~~~~~vNl~~~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~~~~~ 155 (250)
-| +||-|-+.|....+... .+++.+. ...++..+.+ ..+.+|++|.-.|.-..|..
T Consensus 73 ~~~vLlDclt~wl~n~l~~~~~~~~~~~~~-----------~~~ll~~l~~-~~~~~ViVSNEVG~GiVP~~ 132 (167)
T PF02283_consen 73 GDVVLLDCLTLWLTNLLFAEDGDEEDIEEE-----------IEALLEALKQ-SPADLVIVSNEVGLGIVPED 132 (167)
T ss_dssp T-EEEEE-HHHHHHHHHHH---HHHHHHHH-----------HHHHHHHHHH---SEEEEE----------SS
T ss_pred CCEEEEECHHHHHHHHHHCCCCCHHHHHHH-----------HHHHHHHHHC-CCCCEEEEECCCCCCCCCCC
T ss_conf 998999456999999972757737889999-----------9999999973-69989999748778989989
No 115
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare .; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=23.04 E-value=16 Score=13.54 Aligned_cols=32 Identities=44% Similarity=0.589 Sum_probs=23.0
Q ss_pred EEEECCCCHHHHHHHHHH--HHCCCEEEEEECCHH
Q ss_conf 999659856899999999--865986999957989
Q T0640 10 AIITGASQGIGAVIAAGL--ATDGYRVVLIARSKQ 42 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~l--a~~G~~V~i~~r~~~ 42 (250)
++|.||+ =-|..+|.+| ++.|.+|.+++.+.+
T Consensus 2 viIvGaG-~AGl~lA~~L~~~~~gl~V~lie~~~~ 35 (374)
T PF05834_consen 2 VIIVGAG-PAGLSLAARLARARPGLRVLLIEPGPK 35 (374)
T ss_pred EEEECCC-HHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 8999976-999999999863279987999808965
No 116
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core . Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide . Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core .; GO: 0016740 transferase activity, 0008152 metabolic process; PDB: 2h1h_A 2h1f_A 2gt1_A 1psw_A.
Probab=22.32 E-value=16 Score=13.45 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=9.1
Q ss_pred HHHHHHHHCCCEEEEEE
Q ss_conf 99999986598699995
Q T0640 22 VIAAGLATDGYRVVLIA 38 (250)
Q Consensus 22 aia~~la~~G~~V~i~~ 38 (250)
.+.+.|.++.+.+++.-
T Consensus 3 ~l~~~Lr~~~yD~vidl 19 (247)
T PF01075_consen 3 RLIRKLRKEKYDLVIDL 19 (247)
T ss_dssp HHHHHHCTSEEEEEEE-
T ss_pred HHHHHHHCCCCCEEEEC
T ss_conf 89999854799999989
No 117
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria . SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 3gyg_B 1tj4_A 1u2t_A 2d2v_A 1u2s_A 1s2o_A 1tj3_A 2b1r_A 2b1q_A 1tj5_A.
Probab=22.29 E-value=16 Score=13.45 Aligned_cols=130 Identities=9% Similarity=0.137 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999984278874289972479989999999999996298138862354--445653200012344544332112
Q T0640 43 NLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAA--MFMDGSLSEPVDNFRKIMEINVIA 120 (250)
Q Consensus 43 ~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAG--~~~~~~~~~~~e~~~~~~~vNl~~ 120 (250)
.++.+.+.+... ...++.+..+-=+..+++.+++.+.. +...|++|.+.| +.+.. -..+.++|.+.++-....
T Consensus 20 ~~~~l~~~l~~~--~~~~i~f~~~TGRsl~~~~~~~~~~~--l~~Pd~~I~svGteIy~~~-~~~~d~~W~~~i~~~w~~ 94 (247)
T PF05116_consen 20 ALARLRELLEQA--HRPGILFVYVTGRSLESVRELLKEYN--LPQPDFIITSVGTEIYYGP-NLQPDEDWQAHIDYRWDR 94 (247)
T ss_dssp HHHHHHHHHHHH--H---EEEEEE----HHHHHHHHHH-----EE-SEEEE----EEEEST----B-HHHHHHHHTT--H
T ss_pred HHHHHHHHHHHH--HCCCCEEEEECCCCHHHHHHHHHHCC--CCCCCEEEECCCCEEEECC-CCCCCHHHHHHHHCCCCH
T ss_conf 999999999886--25782599987999999999998579--9999899977972799867-982988899998375776
Q ss_pred HHHCCCCCHHHHHHCCCCEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 2200000000110001121311331111046677606688899999999999999841796899856
Q T0640 121 QYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLC 187 (250)
Q Consensus 121 ~~~~~~~~~~~l~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~I~ 187 (250)
..++.++..+.. +.. -..... .+.-..|...........+.++.-+...+++++.|.
T Consensus 95 --~~v~~~l~~~~~-----L~~-Q~~~~q--~~~k~Sy~~~~~~~~~~~~~l~~~l~~~~l~~~~i~ 151 (247)
T PF05116_consen 95 --EAVREILQDLPG-----LRL-QPESEQ--RPYKISYYVDDDDKADILEELRQRLRQRGLRVNIIY 151 (247)
T ss_dssp --HHHHHHHHHHCC-----EEE-GGGGG---CTTCECEEEETTSHCHHHHHHHHHHHC---EEEEEE
T ss_pred --HHHHHHHHHHHH-----HCC-CCHHHC--CCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf --789999997650-----312-764226--985899996454104589999999997698747997
No 118
>PF01139 UPF0027: Uncharacterized protein family UPF0027; InterPro: IPR001233 A number of uncharacterised proteins including Escherichia coli rtcB, Mycobacterium tuberculosis MtCY441.01., Caenorhabditis elegans F16A11.2 and Methanococcus jannaschii MJ0682 belong to this family.; PDB: 1uc2_A 2epg_B.
Probab=21.65 E-value=17 Score=13.36 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 066888999999999999998
Q T0640 156 GIYGSTKFALLGLAESLYREL 176 (250)
Q Consensus 156 ~~Y~asKaal~~l~~~la~e~ 176 (250)
+.|+++-.|-+.++|+-|+.-
T Consensus 339 s~~S~~HGAGR~~SR~~A~~~ 359 (420)
T PF01139_consen 339 SLYSASHGAGRVMSRSEAKRR 359 (420)
T ss_dssp ----B-------S-HHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHH
T ss_conf 316788872035449999875
No 119
>PF03753 HHV6-IE: Human herpesvirus 6 immediate early protein ; InterPro: IPR005507 The proteins in this family are poorly characterised, but an investigation has indicated that the immediate early protein is required for the down-regulation of MHC class I expression in dendritic cells. Human herpesvirus 6 immediate early protein is also referred to as U90.
Probab=21.08 E-value=11 Score=14.55 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=8.4
Q ss_pred EEEECCCCHHHHHHHHHH
Q ss_conf 999659856899999999
Q T0640 10 AIITGASQGIGAVIAAGL 27 (250)
Q Consensus 10 ~lVtGas~GiG~aia~~l 27 (250)
-|+.|+|+|.=...++-|
T Consensus 76 NLlS~aSs~fvs~Y~~mL 93 (993)
T PF03753_consen 76 NLLSSASSKFVSFYEKML 93 (993)
T ss_pred HHHCCCCHHHHHHHHHHH
T ss_conf 423001011799999873
Done!