Query T0641 3NYI, Eubacterium ventriosum, 296 residues
Match_columns 296
No_of_seqs 123 out of 1231
Neff 7.6
Searched_HMMs 22458
Date Thu Jul 22 15:05:06 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0641.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0641.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pzx_A Hypothetical protein AP 100.0 0 0 538.6 32.7 288 2-296 1-289 (289)
2 3lup_A DEGV family protein; PS 100.0 0 0 529.1 26.5 282 1-293 1-285 (285)
3 3fys_A Protein DEGV; fatty aci 100.0 0 0 512.6 30.6 280 3-292 35-315 (315)
4 2g7z_A Conserved hypothetical 100.0 0 0 509.9 29.4 278 1-291 1-281 (282)
5 3fdj_A DEGV family protein; GU 100.0 0 0 511.3 27.8 277 1-292 1-278 (278)
6 2dt8_A DEGV family protein; fa 100.0 0 0 508.9 29.1 277 4-291 2-279 (280)
7 3jr7_A Uncharacterized EGV fam 100.0 0 0 506.4 26.9 279 2-289 19-298 (298)
8 1mgp_A Hypothetical protein TM 100.0 0 0 502.7 26.2 282 2-293 25-310 (313)
9 3egl_A DEGV family protein; al 100.0 0 0 466.7 24.9 260 1-292 1-263 (277)
10 3ct4_A PTS-dependent dihydroxy 92.0 0.62 2.8E-05 24.8 21.7 206 65-291 80-312 (332)
11 1oi2_A Hypothetical protein YC 84.9 1.9 8.4E-05 21.7 20.5 145 65-227 88-255 (366)
12 3ct6_A PTS-dependent dihydroxy 83.1 2.2 1E-04 21.2 9.1 77 68-160 44-121 (131)
13 3gx1_A LIN1832 protein; APC633 81.5 2.6 0.00011 20.8 11.3 81 68-161 42-125 (130)
14 1un8_A Dihydroxyacetone kinase 81.1 2.6 0.00012 20.7 17.7 208 66-291 84-309 (552)
15 2ywm_A Glutaredoxin-like prote 79.7 2.3 0.0001 21.1 4.7 115 4-126 59-177 (229)
16 3gdw_A Sigma-54 interaction do 79.5 2.9 0.00013 20.4 11.5 80 68-160 42-126 (139)
17 2iu4_A DHA-DHAQ, dihydroxyacet 72.9 4.4 0.0002 19.2 21.4 210 66-291 77-309 (336)
18 1hyu_A AHPF, alkyl hydroperoxi 72.7 4.5 0.0002 19.2 5.3 94 6-126 151-245 (521)
19 2fqx_A Membrane lipoprotein TM 72.5 4.5 0.0002 19.2 5.8 50 69-126 47-96 (318)
20 2hqb_A Transcriptional activat 71.9 4.7 0.00021 19.1 5.4 53 66-126 45-97 (296)
21 3ipr_A PTS system, IIA compone 53.1 10 0.00045 16.8 8.4 83 69-162 40-129 (150)
22 1d4b_A CIDE B, human cell deat 44.3 5.4 0.00024 18.7 0.9 54 2-61 46-99 (122)
23 1vhc_A Putative KHG/KDPG aldol 43.5 14 0.00063 15.9 7.4 145 45-204 4-166 (224)
24 2jvf_A De novo protein M7; tet 43.2 14 0.00064 15.9 10.2 73 190-263 3-79 (96)
25 3b48_A Uncharacterized protein 40.4 6.2 0.00028 18.3 0.7 126 1-159 1-130 (135)
26 1fpz_A Cyclin-dependent kinase 35.6 19 0.00084 15.1 7.3 110 47-159 59-175 (212)
27 2pfu_A Biopolymer transport EX 35.5 19 0.00084 15.1 3.1 61 30-91 24-92 (99)
28 2ooa_A E3 ubiquitin-protein li 33.3 20 0.00091 14.8 2.7 31 132-162 9-39 (52)
29 2de0_X Alpha-(1,6)-fucosyltran 32.7 21 0.00093 14.8 4.0 65 193-262 294-361 (526)
30 2h1v_A Ferrochelatase; rossman 32.2 21 0.00095 14.7 10.6 120 66-200 89-221 (310)
31 2gq0_A Chaperone protein HTPG; 31.3 22 0.00098 14.6 3.1 13 70-82 15-27 (303)
32 3knz_A Putative sugar binding 29.8 23 0.001 14.5 4.4 22 121-142 156-177 (366)
33 2juj_A E3 ubiquitin-protein li 29.4 24 0.0011 14.4 3.1 30 133-162 6-35 (56)
34 3ecs_A Translation initiation 29.3 17 0.00077 15.3 1.5 59 78-147 116-174 (315)
35 2yv1_A Succinyl-COA ligase [AD 28.2 25 0.0011 14.3 6.2 168 67-257 77-292 (294)
36 2bcg_G Secretory pathway GDP d 28.0 25 0.0011 14.3 3.7 33 85-126 12-44 (453)
37 2yzu_A Thioredoxin; redox prot 27.1 26 0.0012 14.2 4.3 17 189-205 66-85 (109)
38 1nho_A Probable thioredoxin; b 27.1 23 0.001 14.5 1.8 36 17-55 45-80 (85)
39 2oo9_A E3 ubiquitin-protein li 26.5 27 0.0012 14.1 2.7 28 135-162 5-32 (46)
40 3cp3_A Uncharacterized protein 26.2 18 0.0008 15.2 1.1 37 1-37 1-52 (148)
41 3dnf_A ISPH, LYTB, 4-hydroxy-3 25.8 27 0.0012 14.0 3.8 76 19-95 49-124 (297)
42 3lab_A Putative KDPG (2-keto-3 25.1 28 0.0013 13.9 6.9 141 50-204 4-168 (217)
43 2eel_A Cell death activator CI 25.0 7.8 0.00035 17.6 -0.9 51 3-58 21-71 (91)
44 2g9z_A Thiamine pyrophosphokin 24.1 29 0.0013 13.8 3.7 16 2-17 83-98 (348)
45 1r71_A Transcriptional repress 23.5 27 0.0012 14.1 1.6 49 137-185 44-96 (178)
46 3eeg_A 2-isopropylmalate synth 22.6 31 0.0014 13.6 6.6 14 73-86 30-43 (325)
47 3a11_A Translation initiation 22.5 32 0.0014 13.6 4.6 97 47-161 22-119 (338)
48 1rlj_A NRDI protein; flavoprot 22.2 15 0.00067 15.7 0.1 27 1-27 7-33 (139)
49 2yvk_A Methylthioribose-1-phos 21.2 33 0.0015 13.4 2.2 39 121-159 111-149 (374)
50 1y6z_A Heat shock protein, put 21.2 29 0.0013 13.9 1.4 29 66-94 12-41 (263)
51 2d9s_A CBL E3 ubiquitin protei 20.9 34 0.0015 13.4 2.6 28 135-162 10-37 (53)
52 2jwk_A Protein TOLR; periplasm 20.9 34 0.0015 13.4 3.7 17 68-84 56-72 (74)
53 3bg3_A Pyruvate carboxylase, m 20.4 35 0.0016 13.3 7.8 69 67-136 257-327 (718)
No 1
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=100.00 E-value=0 Score=538.61 Aligned_cols=288 Identities=27% Similarity=0.483 Sum_probs=273.6
Q ss_pred CCE-EEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHH
Q ss_conf 821-8999505789998999864987989999988947860787689899999998357886232368989999999999
Q T0641 2 NAM-YKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSF 80 (296)
Q Consensus 2 ~~m-i~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~ 80 (296)
|.| |+|||||+||||+++++++||+++||+|++||++ |.|++|+++++||++|.+++ .|+||||+|++|.++|+++
T Consensus 1 ~~M~IaIvtDS~~dl~~~~~~~~~I~vvPl~i~~~~~~-y~D~~dis~~e~y~~~~~~~--~~~TS~ps~~~~~e~~~~l 77 (289)
T 1pzx_A 1 NAMPIEIITDSGADLPQSYIREHRIAFLPLVVHWNGQD-YKDGITIEPKQVYDAMRQGH--TVKTAQPSPLAMKELFLPY 77 (289)
T ss_dssp --CCCEEEEEGGGCCCHHHHHHTTCEEECCEEEETTEE-EEBTTTBCHHHHHHHHTTTC--CCEEECCCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHCCCEEEEEEEEECCEE-EECCCCCCHHHHHHHHHCCC--CCCCCCCCHHHHHHHHHHH
T ss_conf 99888999988999999999878968998999999999-87599899999999986399--9865789999999999999
Q ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 86589499997145543578999999999997478980899826566799999999999999748999999999998874
Q T0641 81 VEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMA 160 (296)
Q Consensus 81 ~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~ 160 (296)
.++|++||++|+||+||||||+|++|++++.++|++.+|+||||+++|+|+|++|++|++|+++|++++||+++++++++
T Consensus 78 ~~~~~~ii~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~g~g~lv~~a~~~~~~G~s~eei~~~l~~~~~ 157 (289)
T 1pzx_A 78 AKENRPCLYIAFSSKLSGTYQTAMAVRSELLDEYPEFRLTIIDSKCASLGQGLAVMKAVELAKQNTPYNLLCETIESYCR 157 (289)
T ss_dssp HHTTCCEEEEECCTTTCSHHHHHHHHHHHHHHHSTTCCEEEEECCCCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 86899399998886162799999999998774479973999958971188999999999999869999999999999970
Q ss_pred CCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 16699998375887526974178999988754752899987868997751567999999999999997414898269999
Q T0641 161 SARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFIVSV 240 (296)
Q Consensus 161 ~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~i~i 240 (296)
++++||+|+||+||+||||||++++++|++|+|||||++++|++.+.+|+||.+++++++++.+.++..+. +...+++
T Consensus 158 ~~~~~f~v~~L~~L~kgGRis~~~a~ig~lL~IkPIi~~~~G~l~~~~k~Rg~kka~~~l~~~~~~~~~~~--~~~~v~i 235 (289)
T 1pzx_A 158 HMEHIFTVDNLDYLARGGRISKTAAAFGGLLNIKPLLHVEDGALIPLEKWRGRKKVLKRMVELMGERGDDL--QKQTIGI 235 (289)
T ss_dssp TEEEEEECSCHHHHHHHTSCC----------CEEEEEEEETTEEEEEEEEESHHHHHHHHHHHHHHHCSSG--GGSEEEE
T ss_pred CCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCEEEEEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHCCC--CCCEEEE
T ss_conf 77599996987999877972788999986017079999719879998887008999999999999862478--8738999
Q ss_pred EECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCC
Q ss_conf 84499899999999999873862222689862655675305450999998412159
Q T0641 241 GYGYDKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLGVIRKYETL 296 (296)
Q Consensus 241 ~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gpg~igi~~~~k~~~l 296 (296)
+|+++++++.++.+.+++.++. .++.+.++||++++|+|||++|++|++||..+
T Consensus 236 ~~~~~~e~~~~~~~~l~~~~~~--~~i~~~~i~~~i~~H~Gpgaigv~~~~k~~~~ 289 (289)
T 1pzx_A 236 SHADDEETALELKQMIEETHGC--TRFFLSDIGSAIGAHAGPGTIALFFLNKYIEI 289 (289)
T ss_dssp EESSCHHHHHHHHHHHHHHTCC--CEEEEEECCHHHHHHHCTTCEEEEEESSCCCC
T ss_pred ECCCCHHHHHHHHHHHHHHCCC--CEEEEEEECCEEEEEECCCEEEEEEEEEEECC
T ss_conf 9089999999999999876699--72999984729999806896999999874439
No 2
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protein structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae}
Probab=100.00 E-value=0 Score=529.08 Aligned_cols=282 Identities=22% Similarity=0.374 Sum_probs=265.0
Q ss_pred CCCE-EEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHH
Q ss_conf 9821-899950578999899986498798999998894786078768989999999835788623236898999999999
Q T0641 1 SNAM-YKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRS 79 (296)
Q Consensus 1 ~~~m-i~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~ 79 (296)
||.| |+|||||+||||+++++++||+++||+|++||++ |.|++||++++||++|.+++. .|+|||||+++|.++|++
T Consensus 1 ~~~Mki~IvtDS~~dl~~~~~~~~~I~vvPl~i~~~~~~-y~D~~di~~~efy~~l~~~~~-~p~TSqps~~~~~~~~~~ 78 (285)
T 3lup_A 1 SNAMKLALITDTSAYLPEAIENHEDVYVLDIPIIIDGKT-YIEGQNLTLDQYYDKLAASKE-LPKTSQPSLAELDDLLCQ 78 (285)
T ss_dssp --CCCEEEEEETTBCCCTTTTTCTTEEEECCCEESSSSC-CCBTTTBCHHHHHHHHHHCSS-CCEECCCCHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHCCCEEEEEEEEECCEE-EECCCCCCHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHH
T ss_conf 997888999977999999999768948998999999999-875988999999999984799-874358998999999999
Q ss_pred HHHCCCC-EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9865894-999971455435789999999999974789808998265667999999999999997489999999999988
Q T0641 80 FVEQGFP-VVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDAL 158 (296)
Q Consensus 80 ~~~~g~~-vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~ 158 (296)
+.++||+ ||++|+||+||||||+|++|++ ++++.+|+||||+++|+|+|++|++|++|+++|++++||+++++++
T Consensus 79 ~~~~gyd~ii~i~iSs~lSgty~~a~~aa~----~~~~~~i~ViDS~~~s~~~g~lv~~a~~~~~~G~s~~eI~~~l~~~ 154 (285)
T 3lup_A 79 LEKEGYTHVLGLFIAAGISGFWQNIQFLIE----EHPNLTIAFPDTKITSAPQGNLVRNALMCSREGMDFDVIVNKIQSQ 154 (285)
T ss_dssp HHHTTCCEEEECCSCGGGCTHHHHHTTHHH----HCTTSEEECCCCCCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHHHH----HCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 997799879999788517579999999997----5899829998386601668999999999998599989999999999
Q ss_pred HHCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEE-CCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 741669999837588752697417899998875475289998-7868997751567999999999999997414898269
Q T0641 159 MASARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMK-DGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFI 237 (296)
Q Consensus 159 ~~~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~-~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~ 237 (296)
++++++||+|+||+||+||||||++++++|++|+|||||+++ +|++.+.+|+||.++++++|++.+.++..+. ...
T Consensus 155 ~~~~~~~~~v~~L~~L~kgGRis~~~a~ig~lL~IkPil~~~~~G~i~~~~k~R~~kka~~~l~~~~~~~~~~~---~~~ 231 (285)
T 3lup_A 155 IEKIEGFIVVNDLNHLVKGGRLSNGSAIIGNLLSIKPVLHFNEEGKIVVYEKVRTEKKALKRLAEIVKEMTADG---EYD 231 (285)
T ss_dssp HTTCEEEEECSCTHHHHHHTCBTTHHHHHHHHTTSCCEEEECTTSCEEEEECCSSHHHHHHHHHHHHHHHGGGS---CEE
T ss_pred HHHCEEEEEECCHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCC---CCE
T ss_conf 86447999949789998679764689999850086699999689879998886318789999999999862589---826
Q ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEEEEECC
Q ss_conf 99984499899999999999873862222689862655675305450999998412
Q T0641 238 VSVGYGYDKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLGVIRKY 293 (296)
Q Consensus 238 i~i~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gpg~igi~~~~k~ 293 (296)
++|.|++++++++++.+.+++.++. .++.+.++||++++|+|||++|++|++|.
T Consensus 232 i~i~h~~~~e~a~~l~~~l~~~~~~--~~i~i~~~~pvi~~H~Gpgaigv~~~~K~ 285 (285)
T 3lup_A 232 IAIIHSRAQDKAEQLYNLLAKAGLK--DDLEIVSFGGVIATHLGEGAVAFGITPKN 285 (285)
T ss_dssp EEEEESSCHHHHHHHHHHHHHTTCG--GGEEEEECCHHHHHHHCTTCEEEEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCC--CCEEEEEECCEEEEEECCCEEEEEEEECC
T ss_conf 9999799989999999999866799--98899998629989715684999999679
No 3
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=0 Score=512.58 Aligned_cols=280 Identities=22% Similarity=0.334 Sum_probs=262.1
Q ss_pred CEEEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHH
Q ss_conf 21899950578999899986498798999998894786078768989999999835788623236898999999999986
Q T0641 3 AMYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVE 82 (296)
Q Consensus 3 ~mi~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~~~ 82 (296)
+.|+|||||+||||+++++++||+++||+|++||++ |.|++|+++|+||++|.+++. .|+||||++++|.++|+++.+
T Consensus 35 MKiaIItDStadl~~~~~~~~~I~vvPl~I~i~~~~-Y~D~~di~~eefy~~l~~~~~-~p~TS~ps~~~~~~~fe~l~~ 112 (315)
T 3fys_A 35 MNIAVVTDSTAYIPKEMREQHQIHMIPLQVVFREET-YREEIELDWKSFYEEVKKHNE-LPTTSQPPIGELVALYEELGK 112 (315)
T ss_dssp CCEEEEEEGGGCCCHHHHHHHTEEEECCEEECSSCE-EEBTTTBCHHHHHHHHHTTTC-CCEEECCCHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHCCCEEEEEEEEECCEE-EECCCCCCHHHHHHHHHHCCC-CCEECCCCHHHHHHHHHHHHC
T ss_conf 878999888999999999868958998999999999-725998999999999984899-963479798999999999862
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHC
Q ss_conf 589499997145543578999999999997478980899826566799999999999999748999-9999999988741
Q T0641 83 QGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSF-EQAMSKLDALMAS 161 (296)
Q Consensus 83 ~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~-~ei~~~l~~~~~~ 161 (296)
+|++||++|+||+||||||+|++|++ .+++.+|+||||+++|+|+|++|.+|++|+++|.++ ++|++++++++++
T Consensus 113 ~yd~vi~i~lSs~LSgTy~~a~~aa~----~~~~~~V~ViDS~~~s~g~g~lv~~A~~~~~~G~s~~e~I~~~l~~~~~~ 188 (315)
T 3fys_A 113 SYDAVISIHLSSGISGTFSSAAAADS----MVDNIDVYPFDSEISCLAQGFYALKAAELIKNGASSPEDIIKELEEMKKT 188 (315)
T ss_dssp TCSEEEEEESCTTTCSHHHHHHHGGG----GCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 79879999265411089999999985----48998399967841158889999999999986998089999999998746
Q ss_pred CEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 66999983758875269741789999887547528999878689977515679999999999999974148982699998
Q T0641 162 ARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFIVSVG 241 (296)
Q Consensus 162 ~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~i~i~ 241 (296)
+++||+|+||+||+||||||++++++|++|+|||||++++|++.+.+|+||++|++++|++.+.+...+. .++.++|.
T Consensus 189 ~~~~f~v~~L~~L~kgGRIs~~~a~ig~lL~IkPIl~~~~G~i~~~~K~Rg~kka~~~l~~~~~~~~~~~--~~~~v~I~ 266 (315)
T 3fys_A 189 VRAYFMVDDLAHLQRGGRLSSAQAFIGSLLKVKPILHFDNKVIVPFEKIRTRKKAISRIYELLDEDASKG--LPMRAAVI 266 (315)
T ss_dssp CEEEEECSCTHHHHHHTTTHHHHHHHSSCCCSCEEEEEETTEEEEEEECSCHHHHHHHHHHHHHHHHTTC--CCEEEEEE
T ss_pred EEEEEEECCHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCEEEEEEEHHHHHHHHHHHHHHHHHHHHCC--CCEEEEEE
T ss_conf 0899997988999876977536676653004058999838868874001579999999999999985069--97089999
Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEEEEEC
Q ss_conf 449989999999999987386222268986265567530545099999841
Q T0641 242 YGYDKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLGVIRK 292 (296)
Q Consensus 242 ~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gpg~igi~~~~k 292 (296)
|++++++++++.+++++.+|. .++.+.++||++++|+|||++||+|+.|
T Consensus 267 h~~~~e~a~~l~~~l~~~~~~--~~i~~~~~~~vi~~H~Gpgaigv~~~~K 315 (315)
T 3fys_A 267 HANREEEAAKIIEELSAKYPH--VEFYNSYFGAVIGTHLGEGALGICWCFK 315 (315)
T ss_dssp ESSCHHHHHHHHHHHHHHCTT--EEEEEEECCHHHHHHHCTTCEEEEEEEC
T ss_pred ECCCHHHHHHHHHHHHHHCCC--CEEEEEEECCEEEEEECCCEEEEEEEEC
T ss_conf 798999999999999706799--8399998573999950689199999979
No 4
>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding protein, lipid binding protein, PSI, MCSG; HET: MSE HXA; 2.05A {Streptococcus pyogenes serotype M1}
Probab=100.00 E-value=0 Score=509.89 Aligned_cols=278 Identities=23% Similarity=0.377 Sum_probs=258.4
Q ss_pred CCCE--EEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHH
Q ss_conf 9821--89995057899989998649879899999889478607876898999999983578862323689899999999
Q T0641 1 SNAM--YKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFR 78 (296)
Q Consensus 1 ~~~m--i~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~ 78 (296)
||.| |+|||||+||||+++++++||+++||+|++||++ |.|++++++++||++|.+++. .|+||||++++|.++|+
T Consensus 1 ~n~M~kI~IitDSt~dl~~~~~~~~~I~vvPl~i~~~~~~-y~D~~~i~~~~~~~~~~~~~~-~p~TS~ps~~~~~~~~~ 78 (282)
T 2g7z_A 1 SNAMGTIKIVTDSSITIEPELIKALDITVVPLSVMIDSKL-YSDNDLKEEGHFLSLMKASKS-LPKTSQPPVGLFAETYE 78 (282)
T ss_dssp --CCSCEEEEEETTBCCCHHHHHHHTCEEECCEEEETTEE-EEGGGCCSTTHHHHHHHHCSS-CCEEECCCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEE-EECCCCCCHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHH
T ss_conf 9987987999837889999999868968994999999999-887988999999999971899-87247999999999999
Q ss_pred HHHHCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9986589-499997145543578999999999997478980899826566799999999999999748999999999998
Q T0641 79 SFVEQGF-PVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDA 157 (296)
Q Consensus 79 ~~~~~g~-~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~ 157 (296)
++.++|| +||++|+||+||||||+|++|+++. +.+|+||||+++|+|+|++|++|++|+++|++++||++++++
T Consensus 79 ~~~~~gy~~vi~i~iSs~lSgty~~a~~a~~~~-----~~~i~ViDS~~~s~g~g~lv~~a~~l~~~G~s~~ei~~~l~~ 153 (282)
T 2g7z_A 79 NLVKKGVTDIVAIHLSPALSGTIEASRQGAEIA-----EAPVTVLDSGFTDQAMKFQVVEAAKMAKAGASLNEILAAVQA 153 (282)
T ss_dssp HHHHTTCCEEEEEECCTTTCTHHHHHHHHHHHH-----TCCEEEEECSSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCC-----CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999759982999965762658999999996245-----998899948840588999999999999859999999999999
Q ss_pred HHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 87416699998375887526974178999988754752899987868997751567999999999999997414898269
Q T0641 158 LMASARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFI 237 (296)
Q Consensus 158 ~~~~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~ 237 (296)
+++++++||+|+||+||+||||||++++++|++|||||||++++|++.+.+|+||+|++.+.+.+.+++..+ .....
T Consensus 154 ~~~~~~~~f~v~~L~~L~kgGRis~~~a~ig~lL~IkPIi~~~~G~i~~~~k~Rg~k~~~~~l~~~~~~~~~---~~~~~ 230 (282)
T 2g7z_A 154 IKSKTELYIGVSTLENLVKGGRIGRVTGVLSSLLNVKVVMALKNDELKTLVKGRGNKTFTKWLDSYLAKNSH---RPIAE 230 (282)
T ss_dssp HHHTEEEEEEESCSHHHHHHSGGGGEEC-----CCCEEEEEEETTEEEEEEEESSTHHHHHHHHHHHHHHTT---SCEEE
T ss_pred HHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCC---CCCEE
T ss_conf 984246999989769998779540789999853480899985089089998730199999999999998558---99728
Q ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEEEEE
Q ss_conf 999844998999999999998738622226898626556753054509999984
Q T0641 238 VSVGYGYDKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLGVIR 291 (296)
Q Consensus 238 i~i~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gpg~igi~~~~ 291 (296)
++++|++++++++++.+.+++.++. ++.+.++||++++|+|||++|++|..
T Consensus 231 i~i~h~~~~e~a~~l~e~l~~~~~~---~i~~~~~~~vi~~H~Gpgaigi~v~~ 281 (282)
T 2g7z_A 231 IAISYAGEASLALTLKERIAAYYNH---SISVLETGSIIQTHTGEGAFAVMVRY 281 (282)
T ss_dssp EEEEEESCTHHHHHHHHHHTTTCCS---CCEEEECCHHHHHHHCSSEEEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCC---CEEEEECCCEEEEECCCCEEEEEEEE
T ss_conf 9999089999999999997645699---87999827099998079939999996
No 5
>3fdj_A DEGV family protein; GUT microbiome,, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE P2K PG4; 1.80A {Eubacterium eligens}
Probab=100.00 E-value=0 Score=511.31 Aligned_cols=277 Identities=25% Similarity=0.344 Sum_probs=257.0
Q ss_pred CCCEEEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHH
Q ss_conf 98218999505789998999864987989999988947860787689899999998357886232368989999999999
Q T0641 1 SNAMYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSF 80 (296)
Q Consensus 1 ~~~mi~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~ 80 (296)
||. |+|||||+||||+ +++++|+++||+|++||++ |.|++|+++++||++|.+++. .|+||||++++|.++|
T Consensus 1 ~~~-i~IitDS~~dl~~--~~~~~I~vvPl~i~~~~~~-y~D~~~i~~~e~y~~~~~~~~-~p~TS~p~~~~~~~~~--- 72 (278)
T 3fdj_A 1 SNA-MRLVADSACDIKE--LRGMVFKAVPLTISTDNEE-FCDDGQLDIHRMLDILEKHKG-RSYTACPGIDAWLEAF--- 72 (278)
T ss_dssp --C-CEEEEEGGGCCSC--CTTSEEEEECCEEECSSCE-EECSTTCCHHHHHHHHHTCCS-CCEEECCCHHHHHHHH---
T ss_pred CCC-EEEEEECCCCCCH--HHHCCEEEEEEEEEECCEE-EECCCCCCHHHHHHHHHHCCC-CCCCCCCCHHHHHHHH---
T ss_conf 997-7999868999657--9859949998999999999-864997999999999982899-9878898999999999---
Q ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 86589499997145543578999999999997478980899826566799999999999999748999999999998874
Q T0641 81 VEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMA 160 (296)
Q Consensus 81 ~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~ 160 (296)
++|++||++|+||+||||||+|++|++++.+++|+.+|+||||+++|+|+|++|.+|++|+++|++++||.++++++++
T Consensus 73 -~~~d~vi~i~iSs~LSgTy~~a~~a~~~~~e~~~~~~I~ViDS~~~s~g~g~~v~~a~~~~~~G~s~~ei~~~l~~~~~ 151 (278)
T 3fdj_A 73 -GDDDEIFVVTITAGMSGTYNSAMAARAVYLEEHPQAKVRVIDSKSTGPQMRIILEQLQQMIEEGKKFEEIDGAIDAYMQ 151 (278)
T ss_dssp -TTCSEEEEEESCTTTCSHHHHHHHHHHHHHTTCTTCEEEEEECSSCTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred -HCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf -5699099998577614689999999998885579974999969860276899999999999869999999999999885
Q ss_pred CCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEE-CCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 1669999837588752697417899998875475289998-786899775156799999999999999741489826999
Q T0641 161 SARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMK-DGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFIVS 239 (296)
Q Consensus 161 ~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~-~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~i~ 239 (296)
++++||+|+||+||+||||||++++++|++|||||||+++ +|++.+.+|+||++|++++|++.+.+... +...++
T Consensus 152 ~~~~~~~v~~L~~L~kgGRis~~~a~ig~~L~IkPIi~~~~~G~i~~~~k~R~~kka~~~l~~~~~~~~~----~~~~v~ 227 (278)
T 3fdj_A 152 KTRLFCSLKSLHNLAQNGRVSKVVASAAEVLGISVIGTASSHGTLEAIGKCRGDKKLLVKLQALLDDAGY----EGGKLR 227 (278)
T ss_dssp TEEEEEEESCCHHHHHTTSSCHHHHHGGGSTTEEEEEEECTTSSEEEEEEEESHHHHHHHHHHHHHHHTC----CSCCEE
T ss_pred HCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHCC----CCCEEE
T ss_conf 2659999698789976783658899998622756899984688289988763288999999999997378----998699
Q ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEEEEEC
Q ss_conf 98449989999999999987386222268986265567530545099999841
Q T0641 240 VGYGYDKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLGVIRK 292 (296)
Q Consensus 240 i~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gpg~igi~~~~k 292 (296)
|+|+++++++.++.+.+++.+|. .++.+.++||++|+|+|||++||+|..|
T Consensus 228 I~h~~~~e~a~~l~~~l~~~~~~--~~i~i~~~g~vi~~h~GpG~i~i~~~~k 278 (278)
T 3fdj_A 228 ICHVENEALADKIADMIKQAYGT--TDVCVYKAGGLCSYYAERGGIILSCETK 278 (278)
T ss_dssp EEESSCHHHHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHCTTCEEEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHCCC--CCEEEEECCCEEEEEECCCEEEEEEEEC
T ss_conf 99899999999999999977699--8689998065899984798799999819
No 6
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus HB8}
Probab=100.00 E-value=0 Score=508.93 Aligned_cols=277 Identities=29% Similarity=0.485 Sum_probs=257.9
Q ss_pred EEEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHC
Q ss_conf 18999505789998999864987989999988947860787689899999998357886232368989999999999865
Q T0641 4 MYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQ 83 (296)
Q Consensus 4 mi~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~~~~ 83 (296)
.|+|||||+||||+++++++||+++||+|++||++ |.|++|+++++||++|.+++. .|+|||||+++|.++|+++.++
T Consensus 2 KiaIvtDSs~dl~~~~~~~~~I~vvPl~i~~~~~~-y~D~~~i~~~~~y~~l~~~~~-~p~TS~ps~~~~~~~~~~~~~~ 79 (280)
T 2dt8_A 2 RITLVTDSTSDLPQDLRGRLGVRVVPLYVNLSGAI-YRDWEEITPTEIFQKVREGAA-FPTTSQPSPEDFARVYREALEE 79 (280)
T ss_dssp CEEEEEEGGGCCCHHHHTTTTCEEECCEEEETTEE-EETTTTCCHHHHHHHHHTTCC-CCEEECCCHHHHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHCCCEEEEEEEEECCEE-EECCCCCCHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHC
T ss_conf 88999978889999999868938998999999999-874998999999999983799-8602799999999999998726
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCE
Q ss_conf 89499997145543578999999999997478980899826566799999999999999748999999999998874166
Q T0641 84 GFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMASAR 163 (296)
Q Consensus 84 g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~ 163 (296)
|++||++|+||+||||||+|++|++ ++++ +|+||||+++|+|+|++|++|++|+++|++++||.+++++++++++
T Consensus 80 ~~~vi~i~iSs~lSgty~~a~~a~~----~~~~-~I~ViDS~~~s~~~g~~v~~a~~~~~~G~~~~ei~~~i~~~~~~~~ 154 (280)
T 2dt8_A 80 ADHVLSLHISGKLSGTVQSAELAAQ----EFPG-RVTVVDTQAASLGVGMMVLRAKELLEEGQSLEAVLAELERLRRDHF 154 (280)
T ss_dssp CSEEEEEESCTTTCTHHHHHHHHHT----TSTT-SEEEEECSCCTHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHSCE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHH----HCCC-CEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCE
T ss_conf 9849997377413189999999997----5899-8999928842289999999999999869899999999999886307
Q ss_pred EEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 99998375887526974178999988754752899987868997751567999999999999997414898269999844
Q T0641 164 IFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFIVSVGYG 243 (296)
Q Consensus 164 ~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~i~i~~~ 243 (296)
+||+|+||+||+||||||++++++|++|+|||||++++|++.+.+|+||.+|++++|++.++++.++. ...++++.|+
T Consensus 155 ~~f~v~~L~~L~kgGRis~~~a~ig~~L~ikPIl~~~~G~i~~~~k~R~~kka~~~l~~~~~~~~~~~--~~~~~~i~~~ 232 (280)
T 2dt8_A 155 VRFSVATLEFLKRGGRIGGAQAFLGTLLNLKPVLTLKEGRVEAAGRARGEKKAREEILKAFRAWAEGR--KRIRAYFLYS 232 (280)
T ss_dssp EEEECSCSHHHHHHTCCGGGGGGTTTCTTSEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHTTC--SCEEEEEEES
T ss_pred EEEEECCHHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEEC
T ss_conf 99997988999768976078999987538668899649869997765258999999999999973389--8708999978
Q ss_pred CCHHHHHHHHHHHHHH-CCCCCCEEEEEEECCEEEEEECCCEEEEEEEE
Q ss_conf 9989999999999987-38622226898626556753054509999984
Q T0641 244 YDKEEGFEFMKEVEST-LDVKLDSETNVAIGIVSAVHTGPYPIGLGVIR 291 (296)
Q Consensus 244 ~~~e~~~~~~~~l~~~-~~~~~~~~~~~~i~~vi~~H~Gpg~igi~~~~ 291 (296)
++++++.++.+++.+. ++. .++.+.++||++++|+|||++||+|+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~--~~i~~~~i~~~i~~H~Gpga~gv~~~~ 279 (280)
T 2dt8_A 233 GDEDAVAALRQEVLASGLPV--EEALVNELGAVIASHTGPGTYGFYAYS 279 (280)
T ss_dssp SCTHHHHHHHHHHHHSSSCE--EEEEEEECCHHHHHHHCTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCC--CEEEEEEECCEEEEEECCCEEEEEEEE
T ss_conf 99899999999987742998--759999968699998338707899996
No 7
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein structure initiative; HET: PG6; 2.00A {Ruminococcus gnavus atcc 29149}
Probab=100.00 E-value=0 Score=506.43 Aligned_cols=279 Identities=22% Similarity=0.342 Sum_probs=261.8
Q ss_pred CCEEEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHH
Q ss_conf 82189995057899989998649879899999889478607876898999999983578862323689899999999998
Q T0641 2 NAMYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFV 81 (296)
Q Consensus 2 ~~mi~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~~ 81 (296)
++.|+|||||+||||+++++++||+++||+|++||++ |.|++|+++++||++|.+++. +|+||||++++|.+.|++
T Consensus 19 ~Mki~IvtDS~~dl~~e~~~~~~i~vvPl~i~~~~~~-y~D~~di~~ee~y~~l~~~~~-~p~TS~Ps~~~~~e~~~~-- 94 (298)
T 3jr7_A 19 DMSYKVIVDSCGEFTPEMKADGGFEHVALGIQIEDTQ-WTDDDSLKQEELLLKIAESTS-CAKTSCPSPERYMESYHC-- 94 (298)
T ss_dssp CCCEEEEEETTSCCCHHHHHHSSEEEECCEEEETTEE-EECSTTSCHHHHHHHHHHCSS-CCEEECCCHHHHHHHHCS--
T ss_pred CCCEEEEEECCCCCCHHHHHHCCCEEEEEEEEECCEE-EECCCCCCHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHH--
T ss_conf 9988999978999999999868958998999999999-866999999999999972799-886789999999999985--
Q ss_pred HCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 65894999971455435789999999999974789808998265667999999999999997489999999999988741
Q T0641 82 EQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMAS 161 (296)
Q Consensus 82 ~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~~ 161 (296)
.|++|+++++||+||||||+|++|++++.+++++.+|+|+||+++|+|+|++|.+|++|+++|.+++||.+++++++++
T Consensus 95 -~~~~vi~i~iSs~LSgty~~a~~a~~~~~~~~~~~~I~ViDS~~~s~~~g~lv~~a~~~~~~G~s~~eI~~~l~~~~~~ 173 (298)
T 3jr7_A 95 -DAERIYVVTLSAELSGSYNSAVLGKNLYEEEYGEKQIHVFNSRSASVGETLIALKVQQCEKAGMTFEEVVESVECYIEE 173 (298)
T ss_dssp -SCSEEEEEESCTTTCSHHHHHHHHHHHHHHHHCCCEEEEEECSSCTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf -5892899854763122799999999998876699819998898520778999999999998699999999999999863
Q ss_pred CEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEE-CCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 669999837588752697417899998875475289998-7868997751567999999999999997414898269999
Q T0641 162 ARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMK-DGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFIVSV 240 (296)
Q Consensus 162 ~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~-~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~i~i 240 (296)
+++||+|+||+||+||||||++++++|++|+|||||+++ +|++.+.+|+||++|+++++++.+.+++.+.. +..+++
T Consensus 174 ~~~~f~v~~L~~L~kgGRIs~~~a~ig~lL~IkPIi~~~~~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~--~~~v~i 251 (298)
T 3jr7_A 174 QHTYFVLENLDTLRKNGRLTGIKSLVAGALNIKPIMGSTPQGTICQKEKARGMKKALVKMADCVAADVVNAG--DKILAI 251 (298)
T ss_dssp CCEEEECSCCHHHHHTTCSTTCCC--CCCTTEEEEEEECTTSCEEEEEEEESHHHHHHHHHHHHHHHCCSGG--GCEEEE
T ss_pred CEEEEEECCHHHHHHCCCCCHHHHHHHHHHCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCC--CEEEEE
T ss_conf 579999698799987797716799998642856999984699586044330089999999999999740589--829999
Q ss_pred EECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEEE
Q ss_conf 8449989999999999987386222268986265567530545099999
Q T0641 241 GYGYDKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLGV 289 (296)
Q Consensus 241 ~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gpg~igi~~ 289 (296)
.|+++++++.++.+.+++.+|. .++.+.++||++++|+|||++|+++
T Consensus 252 ~~~~~~e~a~~l~~~l~~~~~~--~~i~i~~~~pvi~~H~Gpgaigv~v 298 (298)
T 3jr7_A 252 AHCNCEERAKEVQRLLKERFAV--KSSFIVDTSGISTVYANDGGIIVVV 298 (298)
T ss_dssp EESSCHHHHHHHHHHHHHHCCC--SEEEEEECCHHHHHHHCTTCEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHCCC--CCEEEEEECCEEEEECCCCEEEEEC
T ss_conf 9897999999999999866699--8689997075889981897399979
No 8
>1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A*
Probab=100.00 E-value=0 Score=502.72 Aligned_cols=282 Identities=25% Similarity=0.372 Sum_probs=258.4
Q ss_pred CCEEEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEE-ECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHH
Q ss_conf 82189995057899989998649879899999889478-60787689899999998357886232368989999999999
Q T0641 2 NAMYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETY-YRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSF 80 (296)
Q Consensus 2 ~~mi~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~-y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~ 80 (296)
|+.|+|||||+||||++++++++|+++||+|+++|+.+ ++|+.+++.++||++|.+++ ..|||||||+++|.++|+++
T Consensus 25 ~MkIaIvtDStadL~~~~~~~~~I~vvPl~I~~~d~~~~~~d~~~~~~~efy~~l~~~~-~~pkTS~Ps~~~~~~~~~~l 103 (313)
T 1mgp_A 25 HMKVKILVDSTADVPFSWMEKYDIDSIPLYVVWEDGRSEPDEREPEEIMNFYKRIREAG-SVPKTSQPSVEDFKKRYLKY 103 (313)
T ss_dssp CCCEEEEEEGGGCCCTTHHHHTTEEEECCEEECTTSCEEECCCCHHHHHHHHHHHHHCS-SCCEEECCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHCCCEEEEEEEEECCEEEEECCCCCCCHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHH
T ss_conf 98889999889999999998789489746999977599926886168999999998679-99641799999999999999
Q ss_pred HHCCCC-EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 865894-9999714554357899999999999747898089982656679999999999999974899999999999887
Q T0641 81 VEQGFP-VVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALM 159 (296)
Q Consensus 81 ~~~g~~-vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~ 159 (296)
.++||+ ||+||+||+||||||+|++|++++ +.+|+||||+++|+|+|++|++|++|+++|++++||++++++.+
T Consensus 104 ~~~Gyd~Ii~i~iSs~LSgty~~a~~a~~~~-----~~~I~ViDS~~~s~g~g~lv~~Aa~~~~~G~s~eeI~~~l~~~~ 178 (313)
T 1mgp_A 104 KEEDYDVVLVLTLSSKLSGTYNSAVLASKEV-----DIPVYVVDTLLASGAIPLPARVAREMLENGATIEEVLKKLDERM 178 (313)
T ss_dssp HHTTCSEEEEEESCTTTCSHHHHHHHHHHHS-----SSCEEEEECSCCGGGTHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCHHHHHHHHHHHHHHCC-----CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 8679998999978840768999999998525-----99689962651127699999999999985999999999999987
Q ss_pred HCC--EEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 416--699998375887526974178999988754752899987868997751567999999999999997414898269
Q T0641 160 ASA--RIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFI 237 (296)
Q Consensus 160 ~~~--~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~ 237 (296)
+++ ++||+|+||+||+||||||++++++|++|||||||++++|++.+.+|+||++|++++|++.+.+...+ .....
T Consensus 179 ~~~~~~~~f~v~~L~~L~kgGRIs~~~a~ig~lL~IkPIl~~~~G~i~~~~k~Rg~kka~~~l~~~~~~~~~~--~~~~~ 256 (313)
T 1mgp_A 179 KNKDFKAIFYVSNFDYLVKGGRVSKFQGFVGNLLKIRVCLHIENGELIPYRKVRGDKKAIEALIEKLREDTPE--GSKLR 256 (313)
T ss_dssp HTTCEEEEEEESCTHHHHHHTCC---------CTTEEEEEEEETTEEEEEEEEESHHHHHHHHHHHHHTTSCT--TCEEE
T ss_pred HCCEEEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCEEEEEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHHC--CCCEE
T ss_conf 5062689999488999976894178999998765165899986887999876422789999999999987404--89719
Q ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEEEEECC
Q ss_conf 99984499899999999999873862222689862655675305450999998412
Q T0641 238 VSVGYGYDKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLGVIRKY 293 (296)
Q Consensus 238 i~i~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gpg~igi~~~~k~ 293 (296)
+++.|+++++++.++.+.+++.++. .++.+.++||++++|+|||++|++|...-
T Consensus 257 i~i~~~~~~e~a~~l~~~l~~~~~~--~~i~~~~i~pvi~~H~Gpgaigv~~~~~~ 310 (313)
T 1mgp_A 257 VIGVHADNEAGVVELLNTLRKSYEV--VDEIISPMGKVITTHVGPGTVGFGIEVLE 310 (313)
T ss_dssp EEEEESSCHHHHHHHHHHHTTTSEE--EEEEEEECCHHHHHHHCTTCEEEEEEEC-
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCC--CCEEEEECCCEEEEEECCCEEEEEEEEEE
T ss_conf 9999498999999999999846799--86999980529999714885999999943
No 9
>3egl_A DEGV family protein; alpha-beta-alpha sandwich, methylated lysines, structural genomics, PSI-2; HET: MLY MSE PLM; 2.41A {Corynebacterium glutamicum atcc 13032}
Probab=100.00 E-value=0 Score=466.67 Aligned_cols=260 Identities=21% Similarity=0.323 Sum_probs=240.2
Q ss_pred CCCE-EEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHH
Q ss_conf 9821-899950578999899986498798999998894786078768989999999835788623236898999999999
Q T0641 1 SNAM-YKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRS 79 (296)
Q Consensus 1 ~~~m-i~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~ 79 (296)
||.| |+|||||+||||+++++++||+++||+|++||++ ++||||+++++.+.|.+
T Consensus 1 ~~~M~iaIitDS~~dl~~~~~~~~~I~vvPl~i~~~g~~------------------------~~ts~~~~~e~~~~~~~ 56 (277)
T 3egl_A 1 SNAMPVRVIVDSSACLPTHVAEDLDITVINLHVMNNGEE------------------------RSTSGLSSLELAASYAR 56 (277)
T ss_dssp --CCCCEEEEEGGGCCCHHHHHHTTEEEECCEEEECSSC------------------------EEEECCCHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHCCCEEEEEEEEECCEE------------------------ECCCCCCHHHHHHHHHH
T ss_conf 998888999978889999999878958997999999998------------------------35789997999999999
Q ss_pred HHHC-CC-CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9865-89-499997145543578999999999997478980899826566799999999999999748999999999998
Q T0641 80 FVEQ-GF-PVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDA 157 (296)
Q Consensus 80 ~~~~-g~-~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~ 157 (296)
..++ || +||++|+||+||||||+|++|++ ++++.+|+||||+++|+|+|+++++|++|+++|++++||.+++++
T Consensus 57 ~l~~~gyd~Ii~i~iSs~LSgty~~a~~aa~----~~~~~~V~ViDS~~~s~~~g~lv~~a~~~~~~G~s~~ei~~~l~~ 132 (277)
T 3egl_A 57 QLERGGDDGVLALHISXELSSTWSAAVTAAA----VFDDDSVRVVDTSSLGMAVGAAAMAAARMAXDGASLQECYDIAVD 132 (277)
T ss_dssp HHHHTTTSCEEEECSCTTTCSHHHHHHHHHT----TSSTTSEEEECCSCCTHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHCCCCEEEEEECCCCHHHHHHHHHHHHH----HCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9985799709999857416189999999996----489982999928960188999999999987749998999999999
Q ss_pred HHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 87416699998375887526974178999988754752899987868997751567999999999999997414898269
Q T0641 158 LMASARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFI 237 (296)
Q Consensus 158 ~~~~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~ 237 (296)
+++++++||+|+||+||+||||||++++++|++|||||||++++|++.+.+|+||+++++++|++.++.+.+. ++..
T Consensus 133 ~~~~~~~~~~v~~L~~L~kgGRis~~~a~ig~lL~IkPIl~~~~G~i~~~~k~R~~kka~~~l~~~~~~~~~~---~~~~ 209 (277)
T 3egl_A 133 TLXRSETWIYLHRIDEIWXSGRISTATAMVSTALATRPIMRFNGGRMEIAAXTRTQSXAFAXLVELAQIRADG---EPVF 209 (277)
T ss_dssp HHHTEEEEEECSCSHHHHHTTCSCTTTCSSGGGGCSSCEEEEETTEEEEEECCCSHHHHHHHHHHHHHHHHTT---SCCE
T ss_pred HHHHCEEEEEECCHHHHCCCCCCCHHHHHHHHHHCCEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCC---CCEE
T ss_conf 8863259999698899412884627899997653717999997998999553055889999999999986079---9779
Q ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEEEEEC
Q ss_conf 9998449989999999999987386222268986265567530545099999841
Q T0641 238 VSVGYGYDKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLGVIRK 292 (296)
Q Consensus 238 i~i~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gpg~igi~~~~k 292 (296)
+++.|+++++++.++.+.+++.++.. ..+...++||++++|+|||++|++|+-+
T Consensus 210 v~i~~~~~~e~a~~l~~~l~~~~~~~-~~i~~~~i~p~i~~H~Gpgaigv~~~~~ 263 (277)
T 3egl_A 210 IAIGQNEAREAAXQLEELLRNALPEG-SSFMSVDIDPTLAVHSGPGAVSVSAVFA 263 (277)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEECCHHHHHHHCTTEEEEEEECS
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCC-CEEEEEEECCEEEEEECCCEEEEEEEEC
T ss_conf 99993899899999999999866998-7599999786999982699599999985
No 10
>3ct4_A PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DHAK; dihydroxyacetone kinase subunit, tranferase; 2.50A {Lactococcus lactis subsp}
Probab=91.97 E-value=0.62 Score=24.82 Aligned_cols=206 Identities=14% Similarity=0.129 Sum_probs=126.4
Q ss_pred ECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEE---E-----------CCHHHHH
Q ss_conf 2368989999999999865894999971455435789999999999974789808998---2-----------6566799
Q T0641 65 TSLPSVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVI---D-----------SKQNTVT 130 (296)
Q Consensus 65 TS~ps~~~~~~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~Vi---D-----------S~~~s~~ 130 (296)
-+.||+..+.++.+.. ..+.-||+| -.--+|-.=|.-+|+++..++. .+|..+ | .|-.-+|
T Consensus 80 FaSPs~~qI~~aik~~-~~~~GvL~i--v~NYtGDvlNF~~A~E~a~~eG--i~v~~v~V~DDva~~~~~~~~gRRGlAG 154 (332)
T 3ct4_A 80 FTSPTPDQIYEAIKSA-DEGAGVLLI--IKNYLGDVMNFEMAREMAEMEE--IKVEQIIVDDDIAVENSLYTQGRRGVAG 154 (332)
T ss_dssp TCCCCHHHHHHHHHHH-CCSSCEEEE--EESCHHHHHHHHHHHHHHHHTT--CCEEEEEECCBCSSSSCTTCSSSCCCTT
T ss_pred CCCCCHHHHHHHHHHC-CCCCCEEEE--EECCHHHHHCHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf 5799889999999833-589998999--7047888768999999998559--6389999664236888665433554304
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEE------
Q ss_conf 99999999999974899999999999887416699998375887526974178999988754752899987868------
Q T0641 131 QALLIDQFVRMLEDGLSFEQAMSKLDALMASARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDI------ 204 (296)
Q Consensus 131 ~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i------ 204 (296)
.-++-.-|-.++++|++++|+.+..++..+++++.-+--+ ...++... +|-..+.++++
T Consensus 155 tvlv~KIaGAaAe~G~~L~ev~~~~~~~~~~~~Tigval~------~c~vP~~~---------~~~f~l~~~emE~G~Gi 219 (332)
T 3ct4_A 155 TVLVHKILGAAAHQEASLDEIKDLADKVVKNIKTIGLALS------AATVPEVG---------KPGFVLDDNEIEYGVGI 219 (332)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTEEEEEEESS------CCCCC-------------------CCEEEETCCT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEC------CCCCCCCC---------CCCCCCCCCCEEECCCC
T ss_conf 8999999999986599999999999999963000215602------56678899---------97632499816734542
Q ss_pred -----EEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC--CHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEE
Q ss_conf -----9977515679999999999999974148982699998449--989999999999987386222268986265567
Q T0641 205 -----GLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFIVSVGYGY--DKEEGFEFMKEVESTLDVKLDSETNVAIGIVSA 277 (296)
Q Consensus 205 -----~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~i~i~~~~--~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~ 277 (296)
....+..+.....+.|++.+.+..+....+.+.+.+-.-+ ...|..-+.+++.+.+......+.....|.-++
T Consensus 220 HGEpG~~r~~~~~a~~l~~~l~~~l~~~~~~~~gd~v~vlvN~lG~ts~~El~i~~~~v~~~L~~~~i~v~~~~vG~~~T 299 (332)
T 3ct4_A 220 HSEPGYRREKMKTSYELATELVGKLKEEFKFEAGQKYGILVNGMGATPLMEQFIFMNDVAKLLTEENIEILFKKVGNYMT 299 (332)
T ss_dssp TSCCCSEEEECCCHHHHHHHHHHHHHHHHTCCTTCEEEEEEEECBSSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECSSC
T ss_pred CCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEC
T ss_conf 79997103788999999999999988556778998699996489886478899999999999997898398641134106
Q ss_pred EEECCCEEEEEEEE
Q ss_conf 53054509999984
Q T0641 278 VHTGPYPIGLGVIR 291 (296)
Q Consensus 278 ~H~Gpg~igi~~~~ 291 (296)
+-=.+ .+.+..++
T Consensus 300 Sl~m~-G~SiTll~ 312 (332)
T 3ct4_A 300 SIDMA-GLSLTMIK 312 (332)
T ss_dssp CTTBC-EEEEEEEE
T ss_pred CCCCC-CCEEEEEE
T ss_conf 67898-51899995
No 11
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A {Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A* 1uoe_A
Probab=84.86 E-value=1.9 Score=21.65 Aligned_cols=145 Identities=12% Similarity=0.103 Sum_probs=94.6
Q ss_pred ECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEE-------EC-----CHHHHHHH
Q ss_conf 2368989999999999865894999971455435789999999999974789808998-------26-----56679999
Q T0641 65 TSLPSVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVI-------DS-----KQNTVTQA 132 (296)
Q Consensus 65 TS~ps~~~~~~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~Vi-------DS-----~~~s~~~g 132 (296)
-+.||+..+.++.+.. ..+.-||+|- .--+|=.=|.-+|+++..++.-+.+..++ |+ |-.-+|.-
T Consensus 88 FaSPs~~qIl~aik~v-~~~~GvLliv--kNYtGDvlNF~mA~E~a~~eGi~v~~v~v~DDva~~~~~~~~gRRGlAGtv 164 (366)
T 1oi2_A 88 FTSPTPDKIFECAMQV-DGGEGVLLII--KNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTV 164 (366)
T ss_dssp TSCCCHHHHHHHHHHH-CCSSCEEEEE--ESSHHHHHHHHHHHHHHHHTTCCEEEEEECCBCSCBSCTTCSSBCCCTHHH
T ss_pred CCCCCHHHHHHHHHHC-CCCCCEEEEE--ECCHHHHHCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHH
T ss_conf 5699879999999840-5899889997--066688505999999999679828999956654677766666775401558
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEEEE------
Q ss_conf 99999999997489999999999988741669999837588752697417899998875475289998786899------
Q T0641 133 LLIDQFVRMLEDGLSFEQAMSKLDALMASARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGL------ 206 (296)
Q Consensus 133 ~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i~~------ 206 (296)
++-.-|-.++++|++++|+.+..++..+++++.-+--+-- -++... +|...+.+++++.
T Consensus 165 lv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigval~~c------~vP~~g---------~~~f~L~e~emE~GmGIHG 229 (366)
T 1oi2_A 165 LIEKLVGAAAERGDSLDACAELGRKLNNQGHSIGIALGAC------TVPAAG---------KPSFTLADNEMEFGVGIHG 229 (366)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHTTEEEEEEEEECC--------------------------CCTTEEEETCCTTS
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCC------CCCCCC---------CCCCCCCCCEEEEECCCCC
T ss_conf 9999999999649999999999999996225124660366------689889---------9775338984896225279
Q ss_pred -----EEEECCHHHHHHHHHHHHHHH
Q ss_conf -----775156799999999999999
Q T0641 207 -----GGIGRNRNKLKNSVLQVAKKY 227 (296)
Q Consensus 207 -----~~k~R~~kka~~~~~~~~~~~ 227 (296)
..+..+.+...+.|++.+...
T Consensus 230 EpG~~r~~~~~a~~lv~~m~~~ll~~ 255 (366)
T 1oi2_A 230 EPGIDRRPFSSLDQTVDEMFDTLLVN 255 (366)
T ss_dssp CCCSEEEECCCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99753577899899999999998704
No 12
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=83.06 E-value=2.2 Score=21.17 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 898999999999986589499997-1455435789999999999974789808998265667999999999999997489
Q T0641 68 PSVESYADVFRSFVEQGFPVVCFT-ITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGL 146 (296)
Q Consensus 68 ps~~~~~~~~~~~~~~g~~vi~i~-iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~ 146 (296)
.++..+.++.++. .++.|+++. +.|. .-| ++++.|.. +.+|++.|.--+-. +..|+-.+..|.
T Consensus 44 Td~~~I~~AIe~~--~~dgVlvl~DLGSA----~m~----~e~a~e~l-~~~V~l~dAPlVEG-----a~aAav~a~~G~ 107 (131)
T 3ct6_A 44 TSFDRVMNAIEEN--EADNLLTFFDLGSA----RMN----LDLVSEMT-DKELTIFNVPLIEG-----AYTASALLEAGA 107 (131)
T ss_dssp CCHHHHHHHHHHS--SCSEEEEEESSGGG----HHH----HHHHHHTC-SSEEEECCSCHHHH-----HHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHC--CCCCEEEEEECCHH----HHH----HHHHHHHC-CCCEEEECCCHHHH-----HHHHHHHHHCCC
T ss_conf 7999999999854--89988999818579----999----99999840-69879974773556-----999999984699
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 99999999998874
Q T0641 147 SFEQAMSKLDALMA 160 (296)
Q Consensus 147 s~~ei~~~l~~~~~ 160 (296)
++++|.+.+++...
T Consensus 108 ~ld~v~~~a~~~~~ 121 (131)
T 3ct6_A 108 TFEAIKEQLEKMLI 121 (131)
T ss_dssp CHHHHHHHHGGGCC
T ss_pred CHHHHHHHHHHHHH
T ss_conf 99999999999887
No 13
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=81.48 E-value=2.6 Score=20.79 Aligned_cols=81 Identities=12% Similarity=0.048 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHC---CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHC
Q ss_conf 8989999999999865---8949999714554357899999999999747898089982656679999999999999974
Q T0641 68 PSVESYADVFRSFVEQ---GFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLED 144 (296)
Q Consensus 68 ps~~~~~~~~~~~~~~---g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~ 144 (296)
-+++++.+.+++..++ ++.||+++== .|++..+ .. +..+. +.+++|+.--+..+ +++|+.+...
T Consensus 42 ~~~~~~~~~~~~~i~~l~~~~gvliltDl--gs~~~~~-~~----l~~~~-~~~v~visGvNlpm-----llea~~~~~~ 108 (130)
T 3gx1_A 42 VEVKAMYEKLKQTVVKLNPVKGVLILSDM--GSLTSFG-NI----LTEEL-GIRTKTVTMVSTPV-----VLEAMRKASL 108 (130)
T ss_dssp SCHHHHHHHHHHHHHTSCCTTCEEEEECS--GGGGTHH-HH----HHHHH-CCCEEEECSCCHHH-----HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEEC--CCHHHHH-HH----HHHHC-CCCEEEEECCCHHH-----HHHHHHHHHC
T ss_conf 89999999999999843888868999827--8806899-99----99825-67689981487799-----9999998645
Q ss_pred CCCHHHHHHHHHHHHHC
Q ss_conf 89999999999988741
Q T0641 145 GLSFEQAMSKLDALMAS 161 (296)
Q Consensus 145 G~s~~ei~~~l~~~~~~ 161 (296)
|.+++++++.+.+...+
T Consensus 109 ~~~l~el~~~~~e~~~~ 125 (130)
T 3gx1_A 109 GRGLEDIYQSCEQLFEN 125 (130)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCC
T ss_conf 99999999999996515
No 14
>1un8_A Dihydroxyacetone kinase; glycerone kinase, DHA kinase; HET: MYY; 2.5A {Citrobacter freundii} SCOP: a.208.1.1 c.119.1.2 PDB: 1un9_A*
Probab=81.07 E-value=2.6 Score=20.70 Aligned_cols=208 Identities=11% Similarity=-0.018 Sum_probs=117.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE---------CCHHHHHHHHHHH
Q ss_conf 3689899999999998658949999714554357899999999999747898089982---------6566799999999
Q T0641 66 SLPSVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVID---------SKQNTVTQALLID 136 (296)
Q Consensus 66 S~ps~~~~~~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViD---------S~~~s~~~g~lv~ 136 (296)
+.||+..+.++.+.. ..+.-||++- .--+|=.=|.-+|+++...+--+.++.+++ .|-.-.|.-++..
T Consensus 84 asPs~~~i~~ai~~v-~~~~Gvl~iv--~NYtGD~lnF~lA~e~a~~~g~~v~~v~v~DDva~~~~~~rRGlAG~vlv~K 160 (552)
T 1un8_A 84 ASPSVDAVLTAIQAV-TGEAGCLLIV--KNYTGDRLNFGLAAEKARRLGYNVEMLIVGDDISLPDNKHPRGIAGTILVHK 160 (552)
T ss_dssp SCCCHHHHHHHHHHH-CCTTCEEEEE--ESCHHHHHHHHHHHHHHHHTTCCEEEEEECCBCSCTTCSSCCCCTTHHHHHH
T ss_pred CCCCHHHHHHHHHHH-CCCCCEEEEE--ECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 896999999999963-5899889997--1467777609999999863587369997334435777888872322689999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCE-EEEE----E--CCEEEEEEE
Q ss_conf 99999974899999999999887416699998375887526974178999988754752-8999----8--786899775
Q T0641 137 QFVRMLEDGLSFEQAMSKLDALMASARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKP-VIIM----K--DGDIGLGGI 209 (296)
Q Consensus 137 ~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkP-Il~~----~--~G~i~~~~k 209 (296)
-|-.++++|++++|+.+..++..+++++.-+--+--.+--.|+-+ +.+.+ -+.+ + .|.- ..+
T Consensus 161 iaGAaAe~G~sL~ev~~~~~~~~~~~~t~gval~~c~~P~~~~~~---------f~l~~~e~e~G~GiHgEpG~~--~~~ 229 (552)
T 1un8_A 161 IAGYFAERGYNLATVLREAQYAASNTFSLGVALSSCHLPQETDAA---------PRHHPGHAELGMGIHGEPGAS--VID 229 (552)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTEEEEEEEEECCCCSSCCSSS---------CCBCTTCEEETCCTTCCCCSE--EES
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC---------CCCCCCCEEECCCCCCCCCCC--CCC
T ss_conf 999999749998999999999996256677652577789889987---------767998568600458999855--778
Q ss_pred ECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC--CHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEE
Q ss_conf 15679999999999999974148982699998449--9899999999999873862222689862655675305450999
Q T0641 210 GRNRNKLKNSVLQVAKKYLDENNKDNFIVSVGYGY--DKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGL 287 (296)
Q Consensus 210 ~R~~kka~~~~~~~~~~~~~~~~~~~~~i~i~~~~--~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gpg~igi 287 (296)
.++.+...+.|++.+....+.. +.+.+.+-.-+ ...|..-+.+++.+.+......+. ...|.-+++--.+ .+.+
T Consensus 230 ~~~~~~~~~~l~~~l~~~~~~~--~~v~~lvN~lG~t~~~El~~~~~~v~~~l~~~~~~~~-~~~g~~~Tsl~m~-G~sl 305 (552)
T 1un8_A 230 TQNSAQVVNLMVDKLLAALPET--GRLAVMINNLGGVSVAEMAIITRELASSPLHSRIDWL-IGPASLVTALDMK-GFSL 305 (552)
T ss_dssp CCBHHHHHHHHHHHHHHHSCSS--CCEEEEEEECBCSCHHHHHHHHHHHHTSTTGGGEEEE-EEEECSSCCTTBE-EEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCC--CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEE-EEEEEEECCCCCC-CCCE
T ss_conf 9999999999999998526999--9599997599998799999999999998875497089-8531266877785-4250
Q ss_pred EEEE
Q ss_conf 9984
Q T0641 288 GVIR 291 (296)
Q Consensus 288 ~~~~ 291 (296)
..++
T Consensus 306 tll~ 309 (552)
T 1un8_A 306 TAIV 309 (552)
T ss_dssp EEEE
T ss_pred ECCC
T ss_conf 1105
No 15
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Aquifex aeolicus VF5} PDB: 2ayt_A
Probab=79.65 E-value=2.3 Score=21.08 Aligned_cols=115 Identities=18% Similarity=0.035 Sum_probs=64.0
Q ss_pred EEEE-EECCCCCCCHHHHHHCCCEEEEEEEEECCEE---EECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHH
Q ss_conf 1899-9505789998999864987989999988947---86078768989999999835788623236898999999999
Q T0641 4 MYKI-VSDSACDLSKEYLEKHDVTIVPLSVSFDGET---YYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRS 79 (296)
Q Consensus 4 mi~I-itDSt~dl~~~~~~~~~I~vvPl~I~~~g~~---~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~ 79 (296)
.|.+ ..|.+. ..++.++++|.-.|--..+.+.. .| .| ..+.+++...+..-. ..+.|.+..-.+.++.
T Consensus 59 kI~~~~vd~~~--~~~l~~~~~V~~~Ptl~~f~~~~~~~~y-~G-~~~~~e~~~fv~~~~----~~~~~~~~l~~~~~e~ 130 (229)
T 2ywm_A 59 KIKLDIYSPFT--HKEETEKYGVDRVPTIVIEGDKDYGIRY-IG-LPAGLEFTTLINGIF----HVSQRKPQLSEKTLEL 130 (229)
T ss_dssp TEEEEEECTTT--CHHHHHHTTCCBSSEEEEESSSCCCEEE-ES-CCCTTHHHHHHHHHH----HHHTTCCSCCHHHHHH
T ss_pred CEEEEEECCCC--CHHHHHHCCCCCCCEEEEEECCCCCCCC-CC-CCCHHHHHHHHHHHC----CCCCCCCCCCHHHHHH
T ss_conf 37999977876--8778875065579746886146555324-78-986788998776510----3688876663224666
Q ss_pred HHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 98658949999714554357899999999999747898089982656
Q T0641 80 FVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQ 126 (296)
Q Consensus 80 ~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~ 126 (296)
+.....++..+-..+..-+.+.....+.+.++..+++..+..||.-.
T Consensus 131 ~~~~~~~~~v~~F~ap~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~ 177 (229)
T 2ywm_A 131 LQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASE 177 (229)
T ss_dssp HTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGG
T ss_pred HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_conf 63258873899996788876599999999999878974899963254
No 16
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Enterococcus faecalis V583}
Probab=79.54 E-value=2.9 Score=20.38 Aligned_cols=80 Identities=14% Similarity=0.097 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHH-----HCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 89899999999998-----6589499997145543578999999999997478980899826566799999999999999
Q T0641 68 PSVESYADVFRSFV-----EQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRML 142 (296)
Q Consensus 68 ps~~~~~~~~~~~~-----~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~ 142 (296)
-+++++.+.+.+.. .+++.||+++= =.|||..+.. ... . .+.+++||.--++- ++++|+..+
T Consensus 42 ~~~~~~~~~~~~~i~~~~~~~~~gVLILtD--l~ggtp~n~~--~~~---~-~~~~v~visg~nlp-----mllea~~~~ 108 (139)
T 3gdw_A 42 MEVQTMYEQLRNQVITQKESLNNGILLLTD--MGSLNSFGNM--LFE---E-TGIRTKAITMTSTM-----IVLEAIRMA 108 (139)
T ss_dssp SCHHHHHHHHHHHHHTSTGGGTTCEEEEEC--SGGGGGHHHH--HHH---H-HCCCEEEECSCCHH-----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEEEEEE--CCCCHHHHHH--HHH---H-CCCCEEEECCCCHH-----HHHHHHHHH
T ss_conf 998999999999998863489973899996--7886069999--998---5-09988998168789-----999999998
Q ss_pred HCCCCHHHHHHHHHHHHH
Q ss_conf 748999999999998874
Q T0641 143 EDGLSFEQAMSKLDALMA 160 (296)
Q Consensus 143 ~~G~s~~ei~~~l~~~~~ 160 (296)
..|.+++||.+.++....
T Consensus 109 ~~~~~l~ei~~~i~~~~~ 126 (139)
T 3gdw_A 109 SVGRSLEDIYQNIQLSFE 126 (139)
T ss_dssp HTTCCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHH
T ss_conf 769999999999999999
No 17
>2iu4_A DHA-DHAQ, dihydroxyacetone kinase; transferase, CO-activator; HET: HIQ; 1.96A {Lactococcus lactis} PDB: 2iu6_A
Probab=72.87 E-value=4.4 Score=19.22 Aligned_cols=210 Identities=13% Similarity=0.052 Sum_probs=119.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEE-EC-----------CHHHHHHHH
Q ss_conf 368989999999999865894999971455435789999999999974789808998-26-----------566799999
Q T0641 66 SLPSVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVI-DS-----------KQNTVTQAL 133 (296)
Q Consensus 66 S~ps~~~~~~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~Vi-DS-----------~~~s~~~g~ 133 (296)
+.||+..+.++.+.. ..+.-||+|- .--+|-.=|.-+|+++...+.-+.+..++ |- |-.-+|.-+
T Consensus 77 aSPs~~~I~~aik~v-~~~~GvL~iv--~NYtGDvlNFgmA~E~a~~eGi~v~~viV~DDva~~~~~~~~gRRGlAG~vl 153 (336)
T 2iu4_A 77 IPPKSKNILKAIRQV-NSGKGVFVII--KNFEADLKEFNEAIKEARTEGIDVRYIVSHDDISVNAYNFHKRHRGVAGTIL 153 (336)
T ss_dssp SCCCHHHHHHHHHHH-CSSSCEEEEE--ESCHHHHHHHHHHHHHHHHTTCCEEEEEECCBCHHHHHTCCSCCCCCTTHHH
T ss_pred CCCCHHHHHHHHHHH-CCCCCEEEEE--ECCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf 799989999999952-5899789998--2578787559999999995799579999721546776556678872127899
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCE-EEEE----E--CCEEEE
Q ss_conf 99999999974899999999999887416699998375887526974178999988754752-8999----8--786899
Q T0641 134 LIDQFVRMLEDGLSFEQAMSKLDALMASARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKP-VIIM----K--DGDIGL 206 (296)
Q Consensus 134 lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkP-Il~~----~--~G~i~~ 206 (296)
+..-|-.++++|++++|+.+..++..+++.+.-+--+-=.+- |++- .+.+-+ -+.+ + .|. .
T Consensus 154 v~KIaGAaAe~G~sL~ev~~~~~~~~~~~~Tigval~~c~~P-~~~~---------~f~L~~~e~E~GmGIHGEpG~--~ 221 (336)
T 2iu4_A 154 LHKILGAFAKEGGSIDEIEQLALSLSPEIYTLGVALAPVHFP-HQKT---------SFVLAEDEVSFGIGIXGEPGY--R 221 (336)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHGGGEEEEEEEEECCEET-TTEE---------SSCCCTTEEEESCCCCCCCCS--E
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCC-CCCC---------CCCCCCCEEEEECCCCCCCCC--C
T ss_conf 999999998659999999999999996236345772442368-9998---------755689838983574699983--0
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEECC--CHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECC
Q ss_conf 775156799999999999999741--48982699998449--98999999999998738622226898626556753054
Q T0641 207 GGIGRNRNKLKNSVLQVAKKYLDE--NNKDNFIVSVGYGY--DKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGP 282 (296)
Q Consensus 207 ~~k~R~~kka~~~~~~~~~~~~~~--~~~~~~~i~i~~~~--~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gp 282 (296)
..+..+.+...+.|++.+...... ...+.+.+.|-.-+ ...|..-+.+++.+.+......+.....|+-+++-=.+
T Consensus 222 ~~~~~~a~~i~~~l~~~l~~~~~~~~~~gd~v~vlVN~lG~ts~lEl~i~~~~v~~~L~~~~i~v~r~~vG~~~TSl~m~ 301 (336)
T 2iu4_A 222 VEKFEGSERIAIELVNKLKAEINWQKKANKNYILLVNGLGSTTLMELYSFQYDVMRLLELEGLSVKFCKVGNLMTSCDMS 301 (336)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHCGGGCSCCEEEEEEEECBSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCTTBE
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECEECCCCCC
T ss_conf 27899999999999999986525455899959999769999759999999999999998789859884534513667888
Q ss_pred CEEEEEEEE
Q ss_conf 509999984
Q T0641 283 YPIGLGVIR 291 (296)
Q Consensus 283 g~igi~~~~ 291 (296)
.+.+..++
T Consensus 302 -GfSiTLl~ 309 (336)
T 2iu4_A 302 -GISLTLCS 309 (336)
T ss_dssp -EEEEEEEE
T ss_pred -EEEEEEEE
T ss_conf -01899995
No 18
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thioredoxin reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=72.68 E-value=4.5 Score=19.19 Aligned_cols=94 Identities=13% Similarity=0.204 Sum_probs=57.3
Q ss_pred EEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHH-HCC
Q ss_conf 9995057899989998649879899999889478607876898999999983578862323689899999999998-658
Q T0641 6 KIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFV-EQG 84 (296)
Q Consensus 6 ~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~~-~~g 84 (296)
.-+.|.+.- ++++++|+|.=||-.+ +||+.+. .| -.+.+++.+++..+.. +..+| ... .+-
T Consensus 151 ~~~id~~~~--~~~~~~~~v~~vp~~~-~n~~~~~-~g-~~~~~~~l~~l~~~~~---~~~~~----------~~~~~~~ 212 (521)
T 1hyu_A 151 HTAIDGGTF--QNEITERNVMGVPAVF-VNGKEFG-QG-RMTLTEIVAKVDTGAE---KRAAE----------ALNKRDA 212 (521)
T ss_dssp EEEEETTTC--HHHHHHTTCCSSSEEE-ETTEEEE-ES-CCCHHHHHHHHCCSSC---CHHHH----------HHHTSCC
T ss_pred EEEEEHHHH--HHHHHHHCCCCCCEEE-ECCEEEE-EC-CCCHHHHHHHHHHCCC---CCCCC----------CCCCCCC
T ss_conf 999760435--8999973989899599-8880665-14-3439999998630023---44445----------5777998
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 949999714554357899999999999747898089982656
Q T0641 85 FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQ 126 (296)
Q Consensus 85 ~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~ 126 (296)
|||++|. +|-+|.. .|..+++ .+.++.++|.+-
T Consensus 213 yDVvIIG--gGpAGls-AA~~lar------~G~~V~liee~~ 245 (521)
T 1hyu_A 213 YDVLIVG--SGPAGAA-AAVYSAR------KGIRTGLMGERF 245 (521)
T ss_dssp EEEEEEC--CSHHHHH-HHHHHHH------TTCCEEEECSST
T ss_pred CCEEEEC--CCHHHHH-HHHHHHH------CCCCEEEEEECC
T ss_conf 8589996--7899999-9999997------899889998168
No 19
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=72.45 E-value=4.5 Score=19.15 Aligned_cols=50 Identities=16% Similarity=0.287 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 9899999999998658949999714554357899999999999747898089982656
Q T0641 69 SVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQ 126 (296)
Q Consensus 69 s~~~~~~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~ 126 (296)
++.++.+.++++.++|+++|+.+ +...+ .+ ...++++||+.++.++|+..
T Consensus 47 ~~~d~~~~~~~~a~~g~dlIi~~-g~~~~----~~---~~~vA~~~Pd~~F~~~d~~~ 96 (318)
T 2fqx_A 47 TDAEYVPSLSAFADENMGLVVAC-GSFLV----EA---VIETSARFPKQKFLVIDAVV 96 (318)
T ss_dssp SGGGHHHHHHHHHHTTCSEEEEE-STTTH----HH---HHHHHHHCTTSCEEEESSCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE-CCCCC----CH---HHHHHHHCCCCEEEEEECCC
T ss_conf 98999999999997799989990-76534----68---89999988999799981776
No 20
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=71.88 E-value=4.7 Score=19.07 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 3689899999999998658949999714554357899999999999747898089982656
Q T0641 66 SLPSVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQ 126 (296)
Q Consensus 66 S~ps~~~~~~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~ 126 (296)
..++..++.+.++++.++|+++|+.+ +. .|..+ ...++.+||+.++.++|+..
T Consensus 45 ~~~~~~~~~~~i~~~~~~G~dlIi~~-g~----~~~~~---~~~~A~~yPd~~F~~~d~~~ 97 (296)
T 2hqb_A 45 GVNSEQKAHRRIKELVDGGVNLIFGH-GH----AFAEY---FSTIHNQYPDVHFVSFNGEV 97 (296)
T ss_dssp CCCSHHHHHHHHHHHHHTTCCEEEEC-ST----HHHHH---HHTTTTSCTTSEEEEESCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEC-CC----CCHHH---HHHHHHHCCCCEEEEECCCC
T ss_conf 79988999999999997799999983-74----10169---99999878998799933764
No 21
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis}
Probab=53.06 E-value=10 Score=16.84 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHH---CCCCEEEEEECCCCCHH-HHHHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 98999999999986---58949999714554357-8999999999997478---98089982656679999999999999
Q T0641 69 SVESYADVFRSFVE---QGFPVVCFTITTLFSGS-YNSAINAKSLVLEDYP---DANICVIDSKQNTVTQALLIDQFVRM 141 (296)
Q Consensus 69 s~~~~~~~~~~~~~---~g~~vi~i~iSs~lSgt-y~~a~~a~~~~~~~~~---~~~i~ViDS~~~s~~~g~lv~~a~~l 141 (296)
+++++.+.+++..+ .++.||+++ -=+.|| ||.|.. +..++. ..+++||---+..+ +++|...
T Consensus 40 ~~~~~~~~i~~~i~~~~~~~~vlilt--Dl~GGSP~N~a~~----~~~~~~~~~~~~v~visG~NLpm-----lle~~~~ 108 (150)
T 3ipr_A 40 DVQALGGQIKTAIENVQQGDGVLVMV--DLLSASPYNQAVL----VINELEPALQKKIFVVSGTNLPM-----VLEAINH 108 (150)
T ss_dssp CHHHHHHHHHHHHHHHCSSSCEEEEE--SSTTSHHHHHHHH----HHTTSCHHHHTTEEEEESCCHHH-----HHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEE--ECCCCCHHHHHHH----HHHHHHHCCCCCEEEEECCCHHH-----HHHHHHH
T ss_conf 99999999999998458888769997--6689988799999----99875433488879997888999-----9999983
Q ss_pred HHCCCCHHHHHHHHHHHHHCC
Q ss_conf 974899999999999887416
Q T0641 142 LEDGLSFEQAMSKLDALMASA 162 (296)
Q Consensus 142 ~~~G~s~~ei~~~l~~~~~~~ 162 (296)
...+.+.+++++.+.+.-...
T Consensus 109 ~~~~~~~~el~~~~~~~~~~~ 129 (150)
T 3ipr_A 109 QLLGTPIAEAAQAIVAQGKES 129 (150)
T ss_dssp HHHTCCHHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHH
T ss_conf 022899999999999999999
No 22
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=44.28 E-value=5.4 Score=18.68 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=39.5
Q ss_pred CCEEEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCC
Q ss_conf 821899950578999899986498798999998894786078768989999999835788
Q T0641 2 NAMYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKL 61 (296)
Q Consensus 2 ~~mi~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~ 61 (296)
+..+.|+++|-.+|-..-.++++|.- |+.+.. +.||.+++.|+||+-+..+..+
T Consensus 46 s~rkGV~A~SL~EL~~K~~~kL~i~~-~~~lvL-----eeDGT~VddEeYF~tLp~nT~l 99 (122)
T 1d4b_A 46 TIRKGLTAATRQELLAKALETLLLNG-VLTLVL-----EEDGTAVDSEDFFQLLEDDTCL 99 (122)
T ss_dssp SCEEEEEECCSSTHHHHHHHHHSCCS-SCEEEE-----TTTTEEECSTHHHHHSSSCCCC
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCC-CEEEEE-----ECCCCEECCHHHHHCCCCCCEE
T ss_conf 60575872899999999999839998-708999-----4799798558888417889799
No 23
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=43.52 E-value=14 Score=15.89 Aligned_cols=145 Identities=16% Similarity=0.174 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 68989999999835788623236898999999999986589499997145543578999999999997478980899826
Q T0641 45 DITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDS 124 (296)
Q Consensus 45 di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS 124 (296)
+.+.+++.+++.+. +..|---..++++..+..+.+.+.|-.++=+|+.+. +|..+.+.+.+++|+..|
T Consensus 4 ~~~~~~i~~~l~~~-~ii~vlr~~~~~~a~~~~~al~~~Gi~~iEITl~t~------~a~~~I~~l~~~~p~~~v----- 71 (224)
T 1vhc_A 4 SYTTQQIIEKLREL-KIVPVIALDNADDILPLADTLAKNGLSVAEITFRSE------AAADAIRLLRANRPDFLI----- 71 (224)
T ss_dssp CCCHHHHHHHHHHH-CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTST------THHHHHHHHHHHCTTCEE-----
T ss_pred CCCHHHHHHHHHHC-CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCH------HHHHHHHHHHHHCCCCEE-----
T ss_conf 61399999999978-979999689999999999999987999899967882------699999999982898458-----
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHH-HHCCEEEEEECCHHHHHHCC-C--------CHHHHHHH
Q ss_conf 56679999999999999974899-------99999999988-74166999983758875269-7--------41789999
Q T0641 125 KQNTVTQALLIDQFVRMLEDGLS-------FEQAMSKLDAL-MASARIFFTVGSLDYLKMGG-R--------IGKVATAA 187 (296)
Q Consensus 125 ~~~s~~~g~lv~~a~~l~~~G~s-------~~ei~~~l~~~-~~~~~~~f~v~~L~~L~kgG-R--------is~~~~~i 187 (296)
+.|.-+-...+.+.++.|.. -+++.+...+. ..-.-..++|.......+-| + ......++
T Consensus 72 ---GaGTVl~~e~~~~a~~aGA~FivSP~~~~~v~~~a~~~~i~~iPG~~TpsEi~~A~~~G~~~vKlFPA~~~gG~~~l 148 (224)
T 1vhc_A 72 ---AAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMI 148 (224)
T ss_dssp ---EEESCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHHTTCCEECEECSHHHHHHHHHTTCCEEEETTTTTTTHHHHH
T ss_pred ---EEEECCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf ---76403657999999971687877898889999999856997168858899999999839996997464333689999
Q ss_pred HHHHCCCEEEEEE-CCEE
Q ss_conf 8875475289998-7868
Q T0641 188 TGKLGVKPVIIMK-DGDI 204 (296)
Q Consensus 188 g~lL~IkPIl~~~-~G~i 204 (296)
-.+...-|=+.|- -|.+
T Consensus 149 kal~~p~p~~~~~ptGGV 166 (224)
T 1vhc_A 149 KALLGPYAQLQIMPTGGI 166 (224)
T ss_dssp HHHHTTTTTCEEEEBSSC
T ss_pred HHHHCCCCCCEEEEECCC
T ss_conf 988560348728850798
No 24
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=43.18 E-value=14 Score=15.85 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=44.1
Q ss_pred HHCCCEEEEEE-CCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHH---HHHHCCCC
Q ss_conf 75475289998-7868997751567999999999999997414898269999844998999999999---99873862
Q T0641 190 KLGVKPVIIMK-DGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFIVSVGYGYDKEEGFEFMKE---VESTLDVK 263 (296)
Q Consensus 190 lL~IkPIl~~~-~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~e~~~~~~~~---l~~~~~~~ 263 (296)
-.+|.--+.++ +|+---....-+..+-+++.++.+++++...+-.++++.|+ +.+.+++.+++.. +.++++.+
T Consensus 3 ~~~i~i~i~I~~~Gq~~e~~~~VsT~~EL~r~L~EL~~~i~r~GAr~V~IsIs-A~~~~qA~~~~~ii~r~~~~LGY~ 79 (96)
T 2jvf_A 3 HMKVDITIKIQRDGQEIEIDIRVSTGKELERALQELEKALARAGARNVQITIS-AENDEQAKELLELIARLLQKLGYK 79 (96)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCSSSHHHHHHHHHHHHHHHHTCSEEEEEEE-CSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred CEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEE-ECCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 34899999984698288899998143899999999999998617644899999-656678999999999999983976
No 25
>3b48_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.21A {Enterococcus faecalis V583} SCOP: c.54.1.2
Probab=40.41 E-value=6.2 Score=18.26 Aligned_cols=126 Identities=13% Similarity=0.026 Sum_probs=66.0
Q ss_pred CCCE-EEEEECCCC-CCCHHHHHHC-CCEE-EEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHH
Q ss_conf 9821-899950578-9998999864-9879-8999998894786078768989999999835788623236898999999
Q T0641 1 SNAM-YKIVSDSAC-DLSKEYLEKH-DVTI-VPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADV 76 (296)
Q Consensus 1 ~~~m-i~IitDSt~-dl~~~~~~~~-~I~v-vPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~ 76 (296)
||.| +.|+.=|-. .+.....+-. .+.. -+..+..-+ +.++ -+.+.+++ .+.++
T Consensus 1 ~~~m~~~IvivsHg~~lA~gl~~~~~~m~~~~~~~i~~~~---~~~~--~~~~~~~~------------------~i~~~ 57 (135)
T 3b48_A 1 SNAMKADILLVSHSKMITDGIKEMIEQMNASEEITIHSLG---GTSD--GSLGSDPM------------------KIIDT 57 (135)
T ss_dssp ---CCEEEEEECSCHHHHHHHHHHHHTTC--CCCEEEECC---SCSS--SSSSCCHH------------------HHHHH
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEE---CCCC--CCCCHHHH------------------HHHHH
T ss_conf 9875017999849889999999999998388884189962---6999--78031699------------------99999
Q ss_pred HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99998658949999714554357899999999999747898089982656679999999999999974899999999999
Q T0641 77 FRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLD 156 (296)
Q Consensus 77 ~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~ 156 (296)
++++ +.++.|++++= =+|||.++.. +.... ++.+...|..++. +.-..++.|+.....|.+++++++.+.
T Consensus 58 i~~~-~~~~gvlvl~D--l~ggsp~n~~-~~~~~-~~~~~~~I~gvNl-----Pml~~al~a~~~~~~~~~l~~i~~~a~ 127 (135)
T 3b48_A 58 INEA-DSDREFLIFAD--LGSAVLSSEL-AFDML-EEDQQKHYHLVDA-----PLVEGAFASAITAGVSDDLTQILAEAQ 127 (135)
T ss_dssp HHHS-CSSCEEEEEEC--SHHHHHHHHH-HHHHS-CHHHHTTEEECCS-----CHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHH-CCCCCEEEEEE--CCCCCHHHHH-HHHHH-CCCCCEEEEEECC-----CHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9851-68996899985--8886226999-99980-5667038999705-----079999999998625999999999999
Q ss_pred HHH
Q ss_conf 887
Q T0641 157 ALM 159 (296)
Q Consensus 157 ~~~ 159 (296)
+..
T Consensus 128 ~~g 130 (135)
T 3b48_A 128 NAG 130 (135)
T ss_dssp TCC
T ss_pred HHH
T ss_conf 986
No 26
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*
Probab=35.57 E-value=19 Score=15.09 Aligned_cols=110 Identities=12% Similarity=0.020 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHCCCCCCEECCCCHHHHH-----HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9899999998357886232368989999-----99999986589499997145543578999999999997478980899
Q T0641 47 TRDECYQRMVDDPKLFPKTSLPSVESYA-----DVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICV 121 (296)
Q Consensus 47 ~~e~~y~~l~~~~~~~pkTS~ps~~~~~-----~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~V 121 (296)
+.+.-++.|.+. +...--+.....++. ++.+.+.+.|-+.+++++..+-....+....+.+.+.+.....+-.+
T Consensus 59 ~l~~Dl~~Lk~~-Gi~~Vv~L~~~~E~~~~~v~~l~~~~~~~gi~~~~~pi~D~~~P~~~~~~~~~~~i~~~l~~g~~V~ 137 (212)
T 1fpz_A 59 NVQKDTEELKSC-GIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKTL 137 (212)
T ss_dssp CHHHHHHHHHHH-TCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCTTCCCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHC-CCCEEEECCCHHHHHHCCCCCHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 699999999977-9988998898889988187518999997698799974068999869999999999999997699089
Q ss_pred EECCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHH
Q ss_conf 826566799999999999999748--99999999999887
Q T0641 122 IDSKQNTVTQALLIDQFVRMLEDG--LSFEQAMSKLDALM 159 (296)
Q Consensus 122 iDS~~~s~~~g~lv~~a~~l~~~G--~s~~ei~~~l~~~~ 159 (296)
|-++..-.=.|.++. +-|...| .+.+++++.+...|
T Consensus 138 VHC~~G~GRsg~v~a--~~L~~~g~~~~~~~Ai~~vr~~R 175 (212)
T 1fpz_A 138 IHSYGGLGRSCLVAA--CLLLYLSDTISPEQAIDSLRDLR 175 (212)
T ss_dssp EECSSSSSHHHHHHH--HHHHHHCSSCCHHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHH--HHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 889999966899999--99999478999999999999867
No 27
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain, transport protein; NMR {Escherichia coli K12}
Probab=35.54 E-value=19 Score=15.08 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=40.9
Q ss_pred EEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEE-------CCCCHHHHHHHHHHHHHCCCC-EEEEE
Q ss_conf 999988947860787689899999998357886232-------368989999999999865894-99997
Q T0641 30 LSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKT-------SLPSVESYADVFRSFVEQGFP-VVCFT 91 (296)
Q Consensus 30 l~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkT-------S~ps~~~~~~~~~~~~~~g~~-vi~i~ 91 (296)
+.|.-+|+ +|-++..++.+++..++..-....|.+ ...+++.+.++++.+...|.. |=.+|
T Consensus 24 I~I~~dg~-~~l~~~~v~~~~L~~~L~~~~~~~~~~~V~i~aD~~~~y~~vv~vmd~~~~aG~~~v~l~T 92 (99)
T 2pfu_A 24 LSVKADNS-MFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVG 92 (99)
T ss_dssp EEEETTTE-EEETTEEECSSSHHHHHHHHSSSCCSSCEEEEECTTCCHHHHHHHHHHHHHTCCCCEECTT
T ss_pred EEEECCCC-EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99937987-8987724558999999999984489964999807999878999999999986998699996
No 28
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=33.26 E-value=20 Score=14.85 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999999974899999999999887416
Q T0641 132 ALLIDQFVRMLEDGLSFEQAMSKLDALMASA 162 (296)
Q Consensus 132 g~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~ 162 (296)
..+-.+.++|..+|+|+++|.+.|.=.+.+.
T Consensus 9 enl~~eI~~Lm~~GYs~~~v~rAL~Ia~Nni 39 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALEIAQNNV 39 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHHHTTTCH
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCH
T ss_conf 4120799999985544999999999986229
No 29
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, core fucose, SH3 domain; 2.61A {Homo sapiens}
Probab=32.73 E-value=21 Score=14.79 Aligned_cols=65 Identities=15% Similarity=0.035 Sum_probs=40.1
Q ss_pred CCEEEEEE--C-CEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 75289998--7-8689977515679999999999999974148982699998449989999999999987386
Q T0641 193 VKPVIIMK--D-GDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFIVSVGYGYDKEEGFEFMKEVESTLDV 262 (296)
Q Consensus 193 IkPIl~~~--~-G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~e~~~~~~~~l~~~~~~ 262 (296)
-.||+.++ . .++......+....-++.+.+..+...........+|+++ +++++-. .+++..+|.
T Consensus 294 ~~PiVGVHVRrtDKi~~Ea~~~~leeYm~~V~~~y~~~~~~~~~~~rrIFLA-TDDp~V~----~e~k~kyp~ 361 (526)
T 2de0_X 294 KHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRVYLA-TDDPSLL----KEAKTKYPN 361 (526)
T ss_dssp CSSEEEEEECCC-----CCCSCSHHHHHHHHHHHHHHHHTTSCCSSCEEEEE-ESCHHHH----HHHHHHCTT
T ss_pred CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE-CCCHHHH----HHHHHHCCC
T ss_conf 9982489983688656410238869999999999999864047766469998-0888899----999987798
No 30
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=32.18 E-value=21 Score=14.73 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=74.5
Q ss_pred CCCCHHHHHHHHHHHHHCCC-CEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 36898999999999986589-499997145543-5789999999999974789808998265667999999999999997
Q T0641 66 SLPSVESYADVFRSFVEQGF-PVVCFTITTLFS-GSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLE 143 (296)
Q Consensus 66 S~ps~~~~~~~~~~~~~~g~-~vi~i~iSs~lS-gty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~ 143 (296)
+.|+++ ++++++.++|. +++++++.-.-| .|..++........++.+..++++|++..--.+.--...
T Consensus 89 ~~P~i~---~~l~~l~~~g~~~ii~lPlyPqyS~~Tt~s~~~~~~~~~~~~~~~~~~~I~~~~~~p~yi~a~a------- 158 (310)
T 2h1v_A 89 IEPFIE---DAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWV------- 158 (310)
T ss_dssp SSSBHH---HHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHHHHCSCEEEECCCCTTCHHHHHHHH-------
T ss_pred CCCCHH---HHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH-------
T ss_conf 998689---9999998559845999752431355762408999999986334872699457579867999999-------
Q ss_pred CCCCHHHHHHHHH----HHHHCCEEEEEECCH--HHHHHCC----CCHHHHHHHHHHHCCCEE-EEEE
Q ss_conf 4899999999999----887416699998375--8875269----741789999887547528-9998
Q T0641 144 DGLSFEQAMSKLD----ALMASARIFFTVGSL--DYLKMGG----RIGKVATAATGKLGVKPV-IIMK 200 (296)
Q Consensus 144 ~G~s~~ei~~~l~----~~~~~~~~~f~v~~L--~~L~kgG----Ris~~~~~ig~lL~IkPI-l~~~ 200 (296)
+.|.+.++ ..+++.+..|.-..+ .++.+|. .+-.++..++..|+..+. +.+.
T Consensus 159 -----~~I~~~l~~~~~~~~~~~~llfSaHglP~~~~~~gd~Y~~~~~~t~~~i~~~l~~~~~~~~fQ 221 (310)
T 2h1v_A 159 -----DRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAVGWQ 221 (310)
T ss_dssp -----HHHHHHHHHSCHHHHTSEEEEEEEECCBGGGGGGTCCHHHHHHHHHHHHHHHHTCSCEEEEEE
T ss_pred -----HHHHHHHHHCCHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf -----999999985763326775586136886611014798489999999999998659984589984
No 31
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=31.31 E-value=22 Score=14.64 Aligned_cols=13 Identities=15% Similarity=0.519 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999986
Q T0641 70 VESYADVFRSFVE 82 (296)
Q Consensus 70 ~~~~~~~~~~~~~ 82 (296)
.+++.+.|..+..
T Consensus 15 ~eeY~~FYk~~~~ 27 (303)
T 2gq0_A 15 DEEYKEFYKHIAH 27 (303)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999986058
No 32
>3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp}
Probab=29.76 E-value=23 Score=14.47 Aligned_cols=22 Identities=14% Similarity=-0.067 Sum_probs=8.6
Q ss_pred EEECCHHHHHHHHHHHHHHHHH
Q ss_conf 9826566799999999999999
Q T0641 121 VIDSKQNTVTQALLIDQFVRML 142 (296)
Q Consensus 121 ViDS~~~s~~~g~lv~~a~~l~ 142 (296)
+.-|++.+...-.+.+-|.++.
T Consensus 156 ~~~Tksft~~~l~l~lla~~l~ 177 (366)
T 3knz_A 156 GAKTKGYHCTVLNLMLLALAVA 177 (366)
T ss_dssp ---CTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 4444421467899999999975
No 33
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=29.40 E-value=24 Score=14.43 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 999999999974899999999999887416
Q T0641 133 LLIDQFVRMLEDGLSFEQAMSKLDALMASA 162 (296)
Q Consensus 133 ~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~ 162 (296)
.+--+.++|..+|+++++|.+.|.=.+.+.
T Consensus 6 ~~~~eI~~Lm~~GYs~~~v~rAL~Ia~Nni 35 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIAQNNI 35 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCS
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHCCH
T ss_conf 022899999985544999999999987119
No 34
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=29.32 E-value=17 Score=15.32 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=34.3
Q ss_pred HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9998658949999714554357899999999999747898089982656679999999999999974899
Q T0641 78 RSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLS 147 (296)
Q Consensus 78 ~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s 147 (296)
.++..+|+.|+ |.+ -|++...+...+ .+..+.++|+|.+|+-..-|..+ |.+|.+.|.+
T Consensus 116 ~~~I~dg~~IL--T~~--~S~tV~~~l~~A---~~~~k~f~V~v~EsrP~~~G~~l----a~~L~~~GI~ 174 (315)
T 3ecs_A 116 HTFIKDGATIL--THA--YSRVVLRVLEAA---VAAKKRFSVYVTESQPDLSGKKM----AKALCHLNVP 174 (315)
T ss_dssp GGGCCTTEEEE--ECS--CCHHHHHHHHHH---HTTTCCEEEEEECCTTTTHHHHH----HHHHHTTTCC
T ss_pred HHHCCCCCEEE--EEC--CCHHHHHHHHHH---HHCCCCEEEEEECCCCCCHHHHH----HHHHHHCCCC
T ss_conf 85679989999--858--838999999999---98699179999479986257999----9999977998
No 35
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii DSM2661}
Probab=28.17 E-value=25 Score=14.29 Aligned_cols=168 Identities=16% Similarity=0.162 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHHHCCCC-EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCE---------------------------
Q ss_conf 68989999999999865894-99997145543578999999999997478980---------------------------
Q T0641 67 LPSVESYADVFRSFVEQGFP-VVCFTITTLFSGSYNSAINAKSLVLEDYPDAN--------------------------- 118 (296)
Q Consensus 67 ~ps~~~~~~~~~~~~~~g~~-vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~--------------------------- 118 (296)
..++....++.+++.+.|-. +++ +|++++-.-+.- ..+ .++++ +.+
T Consensus 77 ~vPa~~v~~~v~ea~~~Gvk~~vi--is~Gf~e~~~~~--l~~-~A~~~-g~riiGPNc~Gi~~~~~~~~~~~~~~~~~p 150 (294)
T 2yv1_A 77 FVPAPFAKDAVFEAIDAGIELIVV--ITEHIPVHDTME--FVN-YAEDV-GVKIIGPNTPGIASPKVGKLGIIPMEVLKE 150 (294)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEE--CCSCCCHHHHHH--HHH-HHHHH-TCEEECSSCCEEEETTTEEEECCCGGGCCE
T ss_pred ECCHHHHHHHHHHHHHCCCCEEEE--ECCCCCCCCHHH--HHH-HHHHC-CCEEECCCCCCEECCCCCEEEECCCCCCCC
T ss_conf 478899999999999769987999--889968141999--999-99972-988877998746666556267447777999
Q ss_pred --EEEEECCHHHHHHHHHHHHHHHHHH--------------CCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCHH
Q ss_conf --8998265667999999999999997--------------489999999999988741669999837588752697417
Q T0641 119 --ICVIDSKQNTVTQALLIDQFVRMLE--------------DGLSFEQAMSKLDALMASARIFFTVGSLDYLKMGGRIGK 182 (296)
Q Consensus 119 --i~ViDS~~~s~~~g~lv~~a~~l~~--------------~G~s~~ei~~~l~~~~~~~~~~f~v~~L~~L~kgGRis~ 182 (296)
|-+| |++.+.+.. +...+.... -|.++.|+.+++.+.-+...+.++.+ .+|+--.
T Consensus 151 G~vali-SQSG~l~~~--l~~~~~~~g~G~S~~vs~Gn~a~~d~~~~d~l~~l~~Dp~T~~I~ly~E------~~g~~~~ 221 (294)
T 2yv1_A 151 GSVGMV-SRSGTLTYE--IAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGE------IGGGAEE 221 (294)
T ss_dssp EEEEEE-ESCSHHHHH--HHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEE------SSSSHHH
T ss_pred CCEEEE-ECCHHHHHH--HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEE------ECCCHHH
T ss_conf 878999-667379999--9999975798779998179977689899999999843999759999988------2885999
Q ss_pred HHHHHHHHHCCCEEEEEECCEEEEEEEECCHHHHHHH----HHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 8999988754752899987868997751567999999----99999999741489826999984499899999999999
Q T0641 183 VATAATGKLGVKPVIIMKDGDIGLGGIGRNRNKLKNS----VLQVAKKYLDENNKDNFIVSVGYGYDKEEGFEFMKEVE 257 (296)
Q Consensus 183 ~~~~ig~lL~IkPIl~~~~G~i~~~~k~R~~kka~~~----~~~~~~~~~~~~~~~~~~i~i~~~~~~e~~~~~~~~l~ 257 (296)
.++.....+ =|||+-++-|.-.+.+++.+...++.. --+.....+++.+ +.-+.+.++..++++.+.
T Consensus 222 ~~a~~~~~~-~KPVV~lk~Grsa~~~~a~sHTGala~~~~G~~~~~~aa~~qaG-------vi~v~~~~el~~~l~~~L 292 (294)
T 2yv1_A 222 EAAKFIEKM-KKPVIGYIAGQSAPEGKRMGHAGAIVEKGKGTAESKMKALEEAG-------AYVAKNISDIPKLLAGIL 292 (294)
T ss_dssp HHHHHHTTC-SSCEEEEEECC-------------------CCHHHHHHHHHHHT-------CEECSSTTHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCEEEEEECCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCC-------CEECCCHHHHHHHHHHHH
T ss_conf 999999877-99989998026788544444054402678988999999999879-------748799999999999986
No 36
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=27.99 E-value=25 Score=14.27 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=13.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf 949999714554357899999999999747898089982656
Q T0641 85 FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQ 126 (296)
Q Consensus 85 ~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~ 126 (296)
||||+| .+|++|..-++.+|+ .+.+|.|+|...
T Consensus 12 yDviVI--GaGl~Gl~aA~~La~-------~G~~VlvlE~~~ 44 (453)
T 2bcg_G 12 YDVIVL--GTGITECILSGLLSV-------DGKKVLHIDKQD 44 (453)
T ss_dssp CSEEEE--CCSHHHHHHHHHHHH-------TTCCEEEECSSS
T ss_pred CCEEEE--CCCHHHHHHHHHHHH-------CCCCEEEECCCC
T ss_conf 878998--959899999999998-------899899988999
No 37
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} PDB: 2cvk_A
Probab=27.09 E-value=26 Score=14.17 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=8.6
Q ss_pred HHHCC--CEEEE-EECCEEE
Q ss_conf 87547--52899-9878689
Q T0641 189 GKLGV--KPVII-MKDGDIG 205 (296)
Q Consensus 189 ~lL~I--kPIl~-~~~G~i~ 205 (296)
..++| -|-+. +.+|+..
T Consensus 66 ~~~~v~~~Pt~~~~~~G~~v 85 (109)
T 2yzu_A 66 MRYRVMSIPTVILFKDGQPV 85 (109)
T ss_dssp HHTTCCSSSEEEEEETTEEE
T ss_pred HHCCCCCCCEEEEEECCEEE
T ss_conf 74767728789999899899
No 38
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=27.07 E-value=23 Score=14.54 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=16.6
Q ss_pred HHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHH
Q ss_conf 899986498798999998894786078768989999999
Q T0641 17 KEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRM 55 (296)
Q Consensus 17 ~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l 55 (296)
++.+++++|.-+| ++.++|+..+ .| ..+.+++.+.+
T Consensus 45 ~~l~~~~~V~~~P-ti~~~~~~~~-~G-~~~~~~l~~~i 80 (85)
T 1nho_A 45 REKAIEYGLMAVP-AIAINGVVRF-VG-APSREELFEAI 80 (85)
T ss_dssp GGGGGGTCSSCSS-EEEETTTEEE-EC-SSCCHHHHHHH
T ss_pred HHHHHHCCCCEEC-EEEECCCEEE-EC-CCCHHHHHHHH
T ss_conf 9999982981749-7999570799-90-89999999999
No 39
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=26.52 E-value=27 Score=14.10 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=21.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999974899999999999887416
Q T0641 135 IDQFVRMLEDGLSFEQAMSKLDALMASA 162 (296)
Q Consensus 135 v~~a~~l~~~G~s~~ei~~~l~~~~~~~ 162 (296)
--+.++|..+|+|+++|.+.|.=.+.+.
T Consensus 5 ~~eI~~Lm~~GYs~~~v~rAL~Ia~Nni 32 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNI 32 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCH
T ss_conf 3899999986776999999999987109
No 40
>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae NCTC13129}
Probab=26.20 E-value=18 Score=15.21 Aligned_cols=37 Identities=32% Similarity=0.359 Sum_probs=27.6
Q ss_pred CCCEEEEEECCCCCCCHHHHHH---------------CCCEEEEEEEEECCE
Q ss_conf 9821899950578999899986---------------498798999998894
Q T0641 1 SNAMYKIVSDSACDLSKEYLEK---------------HDVTIVPLSVSFDGE 37 (296)
Q Consensus 1 ~~~mi~IitDSt~dl~~~~~~~---------------~~I~vvPl~I~~~g~ 37 (296)
||+|+.+++|-..-++.+++.+ ..-+++|+...++++
T Consensus 1 ~~~~~~~m~~p~~~l~~~E~~~~L~~~~~grLa~~~~~~P~vvPv~f~~d~~ 52 (148)
T 3cp3_A 1 SNAMMGIMSDPITILDSSDSLSRLSSESVGRLVVHRKDDLDIFPVNFVLDYS 52 (148)
T ss_dssp ---------CCEEEECHHHHHHHHHTCSEEEEEEEETTEEEEEEEEEEEECS
T ss_pred CCCHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEEEECC
T ss_conf 9333212279842199999999981198799999619930799999999887
No 41
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; trilobal strucure, open alpha/beta, 3Fe-4S, iron, iron- sulfur; 1.65A {Aquifex aeolicus}
Probab=25.80 E-value=27 Score=14.02 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=40.7
Q ss_pred HHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 99864987989999988947860787689899999998357886232368989999999999865894999971455
Q T0641 19 YLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQGFPVVCFTITTL 95 (296)
Q Consensus 19 ~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~~~~g~~vi~i~iSs~ 95 (296)
.+++.||.++...=.-+|....--..-++++ .|+.+.+-.-...-+.||-+....+..+++.++||.|+.+.=+.+
T Consensus 49 ~L~~~GV~~~~~~~~~~g~~ViirAHGv~~~-v~~~~~~~g~~viDaTCP~V~kvh~~v~~~~~~Gy~iiiiG~~~H 124 (297)
T 3dnf_A 49 RLKNLGVFPSQGEEFKEGDTVIIRSHGIPPE-KEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNH 124 (297)
T ss_dssp HHHHHTEEECCSSCCCTTCEEEECTTCCCHH-HHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESCTTC
T ss_pred HHHHCCCEECCHHHCCCCCEEEEHHCCCCHH-HHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9996899863533256654588622199889-999999709919967784527999999999857988999816998
No 42
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica}
Probab=25.12 E-value=28 Score=13.94 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=82.3
Q ss_pred HHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 99999983578862323689899999999998658949999714554357899999999999747898089982656679
Q T0641 50 ECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTV 129 (296)
Q Consensus 50 ~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~ 129 (296)
++...+.+.+...|---..++++..+..+.+.+.|-.++=+++.+. +|..+.+.+.++||+..| =-.|+.
T Consensus 4 ~l~~~l~~~~piipVlr~~~~~~a~~~~~al~~~Gi~~iEitl~~~------~a~~~I~~l~~~~p~~~i---GaGTV~- 73 (217)
T 3lab_A 4 QLDTWLANTKPLIPVIVIDDLVHAIPMAKALVAGGVHLLEVTLRTE------AGLAAISAIKKAVPEAIV---GAGTVC- 73 (217)
T ss_dssp HHHHHHTTSCSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEETTST------THHHHHHHHHHHCTTSEE---EEECCC-
T ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC------HHHHHHHHHHHHCCCCEE---EEEECC-
T ss_conf 6899997379889999789999999999999987998899968990------499999999986899739---899724-
Q ss_pred HHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHH-H------CCEEEEEECCHHHHHHCC-CC--------HHHHHH
Q ss_conf 999999999999974899-------999999999887-4------166999983758875269-74--------178999
Q T0641 130 TQALLIDQFVRMLEDGLS-------FEQAMSKLDALM-A------SARIFFTVGSLDYLKMGG-RI--------GKVATA 186 (296)
Q Consensus 130 ~~g~lv~~a~~l~~~G~s-------~~ei~~~l~~~~-~------~~~~~f~v~~L~~L~kgG-Ri--------s~~~~~ 186 (296)
-...+.+..+.|.+ -.++.+...+.. + -.-..++|.......+-| ++ .+...+
T Consensus 74 ----~~~~~~~a~~aGa~FivSP~~~~~v~~~a~~~~ip~~~~~~~iPG~~TptEi~~A~~~Ga~~vK~FPA~~~gG~~y 149 (217)
T 3lab_A 74 ----TADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKLDGQWQGVFLPGVATASEVMIAAQAGITQLKCFPASAIGGAKL 149 (217)
T ss_dssp ----SHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHCSCCCEEEEEECSHHHHHHHHHTTCCEEEETTTTTTTHHHH
T ss_pred ----CHHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCHHH
T ss_conf ----3689999997489999989999999999998399843355453785988999999987999799650431378999
Q ss_pred HHHHHCCCEEEEEE-CCEE
Q ss_conf 98875475289998-7868
Q T0641 187 ATGKLGVKPVIIMK-DGDI 204 (296)
Q Consensus 187 ig~lL~IkPIl~~~-~G~i 204 (296)
+-.+..--|=+.+- -|.+
T Consensus 150 ik~l~~p~p~i~~~ptGGV 168 (217)
T 3lab_A 150 LKAWSGPFPDIQFCPTGGI 168 (217)
T ss_dssp HHHHHTTCTTCEEEEBSSC
T ss_pred HHHHHCCCCCCEEEEECCC
T ss_conf 9997457999838853799
No 43
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.96 E-value=7.8 Score=17.59 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=33.7
Q ss_pred CEEEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHC
Q ss_conf 21899950578999899986498798999998894786078768989999999835
Q T0641 3 AMYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDD 58 (296)
Q Consensus 3 ~mi~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~ 58 (296)
..+.|+++|--+|-..-.++++|.--|++|.. +.||.+++.|+||+-+..+
T Consensus 21 ~rkGv~A~sL~eL~~K~~~kl~i~~~~~~lvL-----eeDGT~VddEeYF~tLp~n 71 (91)
T 2eel_A 21 SRRGVMASSLQELISKTLDALVIATGLVTLVL-----EEDGTVVDTEEFFQTLGDN 71 (91)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSSSCEEEEE-----TTTCCBCCCHHHHTTSCSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEE-----ECCCCEECCHHHHHCCCCC
T ss_conf 06768828999999999998589987758999-----3789798538888507888
No 44
>2g9z_A Thiamine pyrophosphokinase; thiamin-PNP, TPK, thiamin pyrophosphokinase, structural genomics, profun, bacterial targets at IGS-CNRS, france; HET: VNP; 1.96A {Candida albicans} PDB: 2hh9_A*
Probab=24.09 E-value=29 Score=13.81 Aligned_cols=16 Identities=6% Similarity=0.059 Sum_probs=7.4
Q ss_pred CCEEEEEECCCCCCCH
Q ss_conf 8218999505789998
Q T0641 2 NAMYKIVSDSACDLSK 17 (296)
Q Consensus 2 ~~mi~IitDSt~dl~~ 17 (296)
|.-++|.+|.+|+--.
T Consensus 83 ~a~~~ICADGGANrL~ 98 (348)
T 2g9z_A 83 KCEIIVCADGGANSLY 98 (348)
T ss_dssp TCSEEEEETTHHHHHH
T ss_pred HCCEEEEECCCHHHHH
T ss_conf 4898999538399998
No 45
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=23.46 E-value=27 Score=14.07 Aligned_cols=49 Identities=12% Similarity=0.052 Sum_probs=24.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHH----HCCEEEEEECCHHHHHHCCCCHHHHH
Q ss_conf 99999974899999999999887----41669999837588752697417899
Q T0641 137 QFVRMLEDGLSFEQAMSKLDALM----ASARIFFTVGSLDYLKMGGRIGKVAT 185 (296)
Q Consensus 137 ~a~~l~~~G~s~~ei~~~l~~~~----~~~~~~f~v~~L~~L~kgGRis~~~~ 185 (296)
...+|.+.|++.++|.+.+..-. ......=.++.+..++..|+|+.+.+
T Consensus 44 ~~~~l~~~g~t~~eiA~~lg~s~s~v~~~l~l~~lp~~~~~~~~~g~i~~~~a 96 (178)
T 1r71_A 44 FIGRELAKGKKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFNTGRVRDVTV 96 (178)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHH
T ss_conf 99999983898999999988899999999998069999999999499867999
No 46
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=22.57 E-value=31 Score=13.62 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=5.2
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999865894
Q T0641 73 YADVFRSFVEQGFP 86 (296)
Q Consensus 73 ~~~~~~~~~~~g~~ 86 (296)
..+.++.+.+.|.+
T Consensus 30 k~~i~~~L~~~Gv~ 43 (325)
T 3eeg_A 30 KIIVAKALDELGVD 43 (325)
T ss_dssp HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999986979
No 47
>3a11_A Translation initiation factor EIF-2B, delta subunit; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis}
Probab=22.50 E-value=32 Score=13.61 Aligned_cols=97 Identities=10% Similarity=0.054 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHCCCCCCEECCCCHHHHHH-HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 98999999983578862323689899999-99999865894999971455435789999999999974789808998265
Q T0641 47 TRDECYQRMVDDPKLFPKTSLPSVESYAD-VFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSK 125 (296)
Q Consensus 47 ~~e~~y~~l~~~~~~~pkTS~ps~~~~~~-~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~ 125 (296)
+.+|..+.+++ +---+.|..+..-- .+.-...+. -++..+...+....+.+.+.+..|- +-
T Consensus 22 ~~~ev~~AIk~----M~VRGAPaIgvaaa~glal~a~~~-------~~~~~~e~~~~L~~a~~~L~~aRPT-------av 83 (338)
T 3a11_A 22 EVLEIAEKIKN----MEIRGAGKIARSAAYALQLQAEKS-------KATNVDEFWKEMKQAAKILFETRPT-------AV 83 (338)
T ss_dssp HHHHHHHHHHT----CSSCSHHHHHHHHHHHHHHHHHHC-------CCCSHHHHHHHHHHHHHHHHTTCTT-------CS
T ss_pred CHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHHCCCC-------CC
T ss_conf 79999999764----423681899999999999998642-------4689899999999999999965998-------72
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 667999999999999997489999999999988741
Q T0641 126 QNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMAS 161 (296)
Q Consensus 126 ~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~~ 161 (296)
+.+.+...+.........+|.+++++.+.+.+..+.
T Consensus 84 nL~nai~~~~~~~~~~~~~~~~~~~~k~~l~~~a~~ 119 (338)
T 3a11_A 84 SLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKE 119 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 699999999998653135689999999999999999
No 48
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=22.17 E-value=15 Score=15.74 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.6
Q ss_pred CCCEEEEEECCCCCCCHHHHHHCCCEE
Q ss_conf 982189995057899989998649879
Q T0641 1 SNAMYKIVSDSACDLSKEYLEKHDVTI 27 (296)
Q Consensus 1 ~~~mi~IitDSt~dl~~~~~~~~~I~v 27 (296)
||.||+|+-.|.++-.+.++++.+...
T Consensus 7 ~~~~i~IlY~S~TGnte~~A~~l~~~~ 33 (139)
T 1rlj_A 7 SNAMVQIIFDSKTGNVQRFVNKTGFQQ 33 (139)
T ss_dssp HHSCCEEEECCSSSHHHHHHTTSCCSE
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 898179999888643999999974432
No 49
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=21.24 E-value=33 Score=13.45 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=23.5
Q ss_pred EEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 982656679999999999999974899999999999887
Q T0641 121 VIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALM 159 (296)
Q Consensus 121 ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~ 159 (296)
...+|=.+..+++.+.+..+.++++.+.+++.+.+.+..
T Consensus 111 L~~aRPTaVnL~nAi~r~~~~~~~~~~~~~~~~~l~~~a 149 (374)
T 2yvk_A 111 LNSSRPTAINLSWALERLSHSVENAISVNEAKTNLVHEA 149 (374)
T ss_dssp HHTTCSSCHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 984398176599999999998762799999999999999
No 50
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genomics consortium, SGC, unknown function; 1.88A {Plasmodium falciparum 3D7}
Probab=21.19 E-value=29 Score=13.87 Aligned_cols=29 Identities=3% Similarity=0.048 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCC-EEEEEECC
Q ss_conf 368989999999999865894-99997145
Q T0641 66 SLPSVESYADVFRSFVEQGFP-VVCFTITT 94 (296)
Q Consensus 66 S~ps~~~~~~~~~~~~~~g~~-vi~i~iSs 94 (296)
|-.+.+++.+.|..+...+++ ...+|++.
T Consensus 12 ~evt~eeY~~FYk~~~~~~~~Pl~~iH~~~ 41 (263)
T 1y6z_A 12 KSLTENDYYSFYKNTFKAYDDPLAYVHFNV 41 (263)
T ss_dssp TSCCHHHHHHHHHHHHTCCSCCSEEEEEEE
T ss_pred HHCCHHHHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 249999999999974378548712588611
No 51
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.90 E-value=34 Score=13.40 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=20.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999974899999999999887416
Q T0641 135 IDQFVRMLEDGLSFEQAMSKLDALMASA 162 (296)
Q Consensus 135 v~~a~~l~~~G~s~~ei~~~l~~~~~~~ 162 (296)
-.+.++|..+|+++++|.+.|.=.+.+.
T Consensus 10 ~~eI~~Lm~~Gys~~~v~rAL~Ia~Nni 37 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALVIAHNNI 37 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCH
T ss_conf 1899999985533999999999986219
No 52
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=20.90 E-value=34 Score=13.40 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHHHHHCC
Q ss_conf 89899999999998658
Q T0641 68 PSVESYADVFRSFVEQG 84 (296)
Q Consensus 68 ps~~~~~~~~~~~~~~g 84 (296)
.+++.+.++.+.+...|
T Consensus 56 ~~Y~~Vv~vmd~l~~aG 72 (74)
T 2jwk_A 56 VPYEEVIKALNLLHLAG 72 (74)
T ss_dssp SCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHCC
T ss_conf 87789999999999839
No 53
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=20.36 E-value=35 Score=13.33 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCE--EEEEECCHHHHHHHHHHH
Q ss_conf 6898999999999986589499997145543578999999999997478980--899826566799999999
Q T0641 67 LPSVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDAN--ICVIDSKQNTVTQALLID 136 (296)
Q Consensus 67 ~ps~~~~~~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~--i~ViDS~~~s~~~g~lv~ 136 (296)
--+++.+.+..+++.+.|-++|+|.=+.|+.--++...+. +.+.+.+++.. +|..|+...+.+..+.+.
T Consensus 257 ~~~~dyy~~~a~~l~~aGad~I~ikDtaGll~P~~v~~LV-~alr~~vpdlpI~~H~Hnt~GlavAn~laAv 327 (718)
T 3bg3_A 257 KYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLV-SSLRDRFPDLPLHIHTHDTSGAGVAAMLACA 327 (718)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHHHHHHHH-HHHHHHSTTCCEEEECCCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 7799999999999997499999980777886999999999-9999868998469976799983999999999
Done!