Query         T0641 3NYI, Eubacterium ventriosum, 296 residues
Match_columns 296
No_of_seqs    123 out of 1231
Neff          7.6 
Searched_HMMs 15564
Date          Thu Jul 22 15:07:37 2010
Command       /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0641.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0641.hhr 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1pzxa_ c.119.1.1 (A:) Hypothe 100.0       0       0  532.4  32.7  285    5-296     3-287 (287)
  2 d1mgpa_ c.119.1.1 (A:) Hypothe 100.0       0       0  497.5  26.1  280    2-291     1-284 (285)
  3 d1mgpa_ c.119.1.1 (A:) Hypothe 100.0       0       0  497.4  25.7  280    2-291     1-284 (285)
  4 d3ct6a1 c.54.1.2 (A:1-123) PTS  93.2     0.3 1.9E-05   25.8   7.9   75   69-159    45-120 (123)
  5 d1oi2a_ c.119.1.2 (A:) Dihydro  77.0     2.4 0.00016   19.9  20.5  145   65-227    69-236 (347)
  6 d1un8a4 c.119.1.2 (A:1-335) Di  71.8     3.2 0.00021   19.1  19.3  203   65-291    83-309 (335)
  7 d2hk6a1 c.92.1.1 (A:2-310) Fer  52.3     7.2 0.00047   16.8   6.9  120   65-199    87-219 (309)
  8 d2b82a1 c.108.1.12 (A:4-212) C  50.9     4.8 0.00031   17.9   2.3   26   65-91     84-109 (209)
  9 d1r6bx2 c.37.1.20 (X:169-436)   50.4       7 0.00045   16.9   3.1  125   70-211    24-155 (268)
 10 d1vhca_ c.1.10.1 (A:) Hypothet  45.6     9.2 0.00059   16.1   6.8  144   46-204     2-163 (212)
 11 d1d4ba_ d.15.2.1 (A:) Cell dea  43.6     3.9 0.00025   18.6   0.9   54    2-61     46-99  (122)
 12 d2bfdb2 c.48.1.2 (B:205-342) B  41.4      11 0.00068   15.7   4.1   82   81-189    12-93  (138)
 13 d3b48a1 c.54.1.2 (A:1-132) Unc  37.9       5 0.00032   17.8   0.7   75   74-158    52-126 (132)
 14 d1umdb2 c.48.1.2 (B:188-324) B  32.3      15 0.00094   14.8   4.6   91   81-199    12-105 (137)
 15 d1pdoa_ c.54.1.1 (A:) IIA doma  32.2      15 0.00095   14.7   9.7   79   69-159    40-121 (129)
 16 d1w85b2 c.48.1.2 (B:193-324) P  30.6      16   0.001   14.6   4.4   91   81-199     6-99  (132)
 17 d1usua_ d.14.1.8 (A:) Heat sho  27.8      17  0.0011   14.3   2.2   28   66-93     11-39  (256)
 18 d1t9ka_ c.124.1.5 (A:) Probabl  26.1      19  0.0012   14.1   2.6   37  121-157    82-118 (340)
 19 d2nqra3 c.57.1.2 (A:178-326) M  26.1      13 0.00082   15.1   1.2   68    9-84     25-92  (149)
 20 d1r71a_ a.4.14.1 (A:) Transcri  25.9      17  0.0011   14.3   1.8   51  135-185    20-74  (114)
 21 d1hnja1 c.95.1.2 (A:1-174) Ket  25.8      19  0.0012   14.0   4.9   22  179-200    86-107 (174)
 22 d1fpza_ c.45.1.1 (A:) Kinase a  25.8      19  0.0012   14.0   7.7   96   65-160    52-152 (176)
 23 d1u6ea1 c.95.1.2 (A:-10-174) K  24.9      20  0.0013   13.9   5.1  102   40-146    32-140 (184)
 24 d1l5ja2 c.8.2.1 (A:161-372) Ac  24.7      20  0.0013   13.9   2.1   30   74-103    60-94  (212)
 25 d1t5oa_ c.124.1.5 (A:) Putativ  24.1      20  0.0013   13.8   4.0   41  121-161    83-123 (340)
 26 d2bcgg1 c.3.1.3 (G:5-301) Guan  23.6      21  0.0013   13.8   3.6   33   85-126     6-38  (297)
 27 d2obba1 c.108.1.25 (A:1-122) H  23.2      21  0.0014   13.7   4.0   80   64-153    18-121 (122)
 28 d2jera1 d.126.1.6 (A:2-365) Ag  22.0      22  0.0014   13.5   3.4   36  251-288   325-360 (364)
 29 d2fwha1 c.47.1.1 (A:428-544) T  21.5      23  0.0015   13.5   2.5   11   68-78      8-18  (117)
 30 d1r71a_ a.4.14.1 (A:) Transcri  21.5     9.7 0.00062   15.9  -0.2   51  135-185    20-74  (114)
 31 d2ozlb2 c.48.1.2 (B:192-329) E  21.4      23  0.0015   13.5   4.2   91   81-199    10-104 (138)
 32 d1pdoa_ c.54.1.1 (A:) IIA doma  20.1      24  0.0016   13.3  10.2   80   69-160    40-122 (129)

No 1  
>d1pzxa_ c.119.1.1 (A:) Hypothetical protein apc36103 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00  E-value=0  Score=532.38  Aligned_cols=285  Identities=27%  Similarity=0.476  Sum_probs=270.7

Q ss_pred             EEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHCC
Q ss_conf             89995057899989998649879899999889478607876898999999983578862323689899999999998658
Q T0641             5 YKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQG   84 (296)
Q Consensus         5 i~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~~~~g   84 (296)
                      |+|||||+||||++++++++|+++||+|++||++ |.|++||++++||++|.+++  .|+||||++++|.++|+++.++|
T Consensus         3 iaIvtDS~~dl~~~~~~~~~I~vvPl~i~~~~~~-y~D~~dis~eefy~~l~~~~--~~~TS~ps~~~~~~~~~~~~~~~   79 (287)
T d1pzxa_           3 IEIITDSGADLPQSYIREHRIAFLPLVVHWNGQD-YKDGITIEPKQVYDAMRQGH--TVKTAQPSPLAMKELFLPYAKEN   79 (287)
T ss_dssp             CEEEEEGGGCCCHHHHHHTTCEEECCEEEETTEE-EEBTTTBCHHHHHHHHTTTC--CCEEECCCHHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHCCCEEEEEEEEECCEE-EECCCCCCHHHHHHHHHCCC--CCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             7999978899999999878968998999999999-87599899999999986499--98647889999999999998489


Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEE
Q ss_conf             94999971455435789999999999974789808998265667999999999999997489999999999988741669
Q T0641            85 FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMASARI  164 (296)
Q Consensus        85 ~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~  164 (296)
                      ++||++|+||+||||||+|++|++++.+++|+.+|+||||+++|+|+|++|++|++|+++|++++||.++++++++++++
T Consensus        80 ~~vi~i~iSs~LSgtyn~a~~aa~~~~~~~~~~~i~ViDS~~~s~g~g~~v~~a~~~~~~G~s~~ei~~~l~~~~~~~~~  159 (287)
T d1pzxa_          80 RPCLYIAFSSKLSGTYQTAMAVRSELLDEYPEFRLTIIDSKCASLGQGLAVMKAVELAKQNTPYNLLCETIESYCRHMEH  159 (287)
T ss_dssp             CCEEEEECCTTTCSHHHHHHHHHHHHHHHSTTCCEEEEECCCCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEE
T ss_conf             94999977754346999999999987733788639999688506777899999999998599999999999999728699


Q ss_pred             EEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             99983758875269741789999887547528999878689977515679999999999999974148982699998449
Q T0641           165 FFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFIVSVGYGY  244 (296)
Q Consensus       165 ~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~i~i~~~~  244 (296)
                      ||+|+||+||+||||||++++++|++|+|||||++++|++.+.+|+||.+++++++++.+.+..++.  ....+.++|++
T Consensus       160 ~f~v~~L~~L~kgGRis~~~~~ig~~L~ikPIl~~~~G~i~~~~k~Rg~kka~~~l~~~~~~~~~~~--~~~~v~i~~~~  237 (287)
T d1pzxa_         160 IFTVDNLDYLARGGRISKTAAAFGGLLNIKPLLHVEDGALIPLEKWRGRKKVLKRMVELMGERGDDL--QKQTIGISHAD  237 (287)
T ss_dssp             EEECSCHHHHHHHTSCC----------CEEEEEEEETTEEEEEEEEESHHHHHHHHHHHHHHHCSSG--GGSEEEEEESS
T ss_pred             EEEECCHHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHCCC--CCCEEEEEECC
T ss_conf             9994977999877973678999986206348999619989998887008899999999999862368--87289999489


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCC
Q ss_conf             9899999999999873862222689862655675305450999998412159
Q T0641           245 DKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLGVIRKYETL  296 (296)
Q Consensus       245 ~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gpg~igi~~~~k~~~l  296 (296)
                      +++++.++.+.+++.++.  .++.+.++||++++|+|||++|++|++||-.+
T Consensus       238 ~~e~~~~l~~~l~~~~~~--~~i~~~~i~~vi~~H~Gpga~gv~~~~k~~~~  287 (287)
T d1pzxa_         238 DEETALELKQMIEETHGC--TRFFLSDIGSAIGAHAGPGTIALFFLNKYIEI  287 (287)
T ss_dssp             CHHHHHHHHHHHHHHTCC--CEEEEEECCHHHHHHHCTTCEEEEEESSCCCC
T ss_pred             CHHHHHHHHHHHHHHCCC--CCEEEEEECCEEEEEECCCEEEEEEEEEECCC
T ss_conf             999999999999877699--81999985729999826895999999861049


No 2  
>d1mgpa_ c.119.1.1 (A:) Hypothetical protein TM841 {Thermotoga maritima [TaxId: 2336]} SCOP: d1vpva_ d1pzxb_ d1pzxa_
Probab=100.00  E-value=0  Score=497.52  Aligned_cols=280  Identities=25%  Similarity=0.381  Sum_probs=256.7

Q ss_pred             CCEEEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEE-EECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHH
Q ss_conf             8218999505789998999864987989999988947-860787689899999998357886232368989999999999
Q T0641             2 NAMYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGET-YYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSF   80 (296)
Q Consensus         2 ~~mi~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~-~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~   80 (296)
                      |+.|+|||||+||||+++++++||+++||+|+++|++ +++|+.+++.++||++|.+.+ ..|+||||||++|.++|+++
T Consensus         1 ~Mki~IitDSs~dl~~~~~~~~~I~viPl~i~~~d~~~~~~d~~~~~~~~fy~~l~~~~-~~p~TSqps~~~~~~~~~~~   79 (285)
T d1mgpa_           1 HMKVKILVDSTADVPFSWMEKYDIDSIPLYVVWEDGRSEPDEREPEEIMNFYKRIREAG-SVPKTSQPSVEDFKKRYLKY   79 (285)
T ss_dssp             CCCEEEEEEGGGCCCTTHHHHTTEEEECCEEECTTSCEEECCCCHHHHHHHHHHHHHCS-SCCEEECCCHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCCHHHHHHHHHHCC-CCCEECCCCHHHHHHHHHHH
T ss_conf             96499996235789889997639789899999768177306886468899999997178-97332378989999999999


Q ss_pred             HHCCCC-EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             865894-9999714554357899999999999747898089982656679999999999999974899999999999887
Q T0641            81 VEQGFP-VVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALM  159 (296)
Q Consensus        81 ~~~g~~-vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~  159 (296)
                      .++||+ ||++|+||+||||||+|++|++++     +.+|+|+||+++|+|+|++|++|++|+++|++++||++++++.+
T Consensus        80 ~~~gyd~ii~i~iSs~lSgty~~a~~a~~~~-----~~~i~ViDS~~~s~~~g~~v~~a~~~~~~G~~~~ei~~~l~~~~  154 (285)
T d1mgpa_          80 KEEDYDVVLVLTLSSKLSGTYNSAVLASKEV-----DIPVYVVDTLLASGAIPLPARVAREMLENGATIEEVLKKLDERM  154 (285)
T ss_dssp             HHTTCSEEEEEESCTTTCSHHHHHHHHHHHS-----SSCEEEEECSCCGGGTHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHCCCCEEEEEECCCHHHHHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             9648989999952421459999999999704-----89789992452356899999999999972899999999999876


Q ss_pred             HCC--EEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             416--699998375887526974178999988754752899987868997751567999999999999997414898269
Q T0641           160 ASA--RIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFI  237 (296)
Q Consensus       160 ~~~--~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~  237 (296)
                      +++  ++||+|+||+||+||||||++++++|++|+|||||++++|++.+.+|+||++||++++++.+.+...++  ....
T Consensus       155 ~~~~~~~~~~v~~L~~L~kgGRis~~~a~ig~lL~IkPIl~~~~G~~~~~~k~R~~kka~~~l~~~i~~~~~~~--~~~~  232 (285)
T d1mgpa_         155 KNKDFKAIFYVSNFDYLVKGGRVSKFQGFVGNLLKIRVCLHIENGELIPYRKVRGDKKAIEALIEKLREDTPEG--SKLR  232 (285)
T ss_dssp             HTTCEEEEEEESCTHHHHHHTCC---------CTTEEEEEEEETTEEEEEEEEESHHHHHHHHHHHHHTTSCTT--CEEE
T ss_pred             HCCEEEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCEEEEEEECCEEEEEEECCCHHHHHHHHHHHHHHHHCCC--CCEE
T ss_conf             01707899987355888646861367998755652317999988844897421668899999999999960378--8269


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEEEEE
Q ss_conf             999844998999999999998738622226898626556753054509999984
Q T0641           238 VSVGYGYDKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLGVIR  291 (296)
Q Consensus       238 i~i~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gpg~igi~~~~  291 (296)
                      +.+.|+++++++.++.+++++.++.  .++.+.++||++++|+|||++|+++-.
T Consensus       233 i~i~~~~~~~~~~~l~~~l~~~~~~--~~i~i~~~g~~i~~H~Gpgaigi~i~~  284 (285)
T d1mgpa_         233 VIGVHADNEAGVVELLNTLRKSYEV--VDEIISPMGKVITTHVGPGTVGFGIEV  284 (285)
T ss_dssp             EEEEESSCHHHHHHHHHHHTTTSEE--EEEEEEECCHHHHHHHCTTCEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCC--CCEEEEECCCEEEEECCCCEEEEEEEE
T ss_conf             9998539989999999999985598--618985312021302286758998873


No 3  
>d1mgpa_ c.119.1.1 (A:) Hypothetical protein TM841 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=0  Score=497.36  Aligned_cols=280  Identities=25%  Similarity=0.374  Sum_probs=257.3

Q ss_pred             CCEEEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEE-CCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHH
Q ss_conf             821899950578999899986498798999998894786-0787689899999998357886232368989999999999
Q T0641             2 NAMYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYY-RDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSF   80 (296)
Q Consensus         2 ~~mi~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y-~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~   80 (296)
                      |+.|+|||||+||||++++++++|+++||+|+++|+++| +|+++++.++||++|.+.+ ..|+|||||+++|.++|+++
T Consensus         1 ~MKi~IitDS~~dl~~~~~~~~~I~vvPl~i~~~d~~~~~~d~~~~~~~~fy~~~~~~~-~~p~TS~ps~~~~~~~~~~~   79 (285)
T d1mgpa_           1 HMKVKILVDSTADVPFSWMEKYDIDSIPLYVVWEDGRSEPDEREPEEIMNFYKRIREAG-SVPKTSQPSVEDFKKRYLKY   79 (285)
T ss_dssp             CCCEEEEEEGGGCCCTTHHHHTTEEEECCEEECTTSCEEECCCCHHHHHHHHHHHHHCS-SCCEEECCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHCCCEEEEEEEEECCEEEEECCCCCCCHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHH
T ss_conf             99889999788999999998789789807999988389825887478999999998579-98741689999999999999


Q ss_pred             HHCCCC-EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             865894-9999714554357899999999999747898089982656679999999999999974899999999999887
Q T0641            81 VEQGFP-VVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALM  159 (296)
Q Consensus        81 ~~~g~~-vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~  159 (296)
                      .++||+ |+++|+||+||||||+|++|++.     .+.+|+||||+++|+|+|++|++|++|+++|.+++||++++++.+
T Consensus        80 ~~~gyd~vi~i~iSs~lSgty~~a~~a~~~-----~~~~v~ViDS~~~s~g~g~~v~~a~~~~~~G~s~~ei~~~l~~~~  154 (285)
T d1mgpa_          80 KEEDYDVVLVLTLSSKLSGTYNSAVLASKE-----VDIPVYVVDTLLASGAIPLPARVAREMLENGATIEEVLKKLDERM  154 (285)
T ss_dssp             HHTTCSEEEEEESCTTTCSHHHHHHHHHHH-----SSSCEEEEECSCCGGGTHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHCCCCCEEEEECCCHHHHHHHHHHHHHHH-----CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             865998389995573050799999999971-----699689972554306689999999999885999999999999986


Q ss_pred             HCC--EEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             416--699998375887526974178999988754752899987868997751567999999999999997414898269
Q T0641           160 ASA--RIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFI  237 (296)
Q Consensus       160 ~~~--~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i~~~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~  237 (296)
                      +++  ++||+|+||+||+||||||++++++|++||||||+++++|++.+.+|+||.+++++++++.+.++.++  .....
T Consensus       155 ~~~~~~~~~~v~~L~~L~kgGRi~~~~a~ig~~L~ikPIl~~~~G~i~~~~k~R~~kka~~~l~~~~~~~~~~--~~~~~  232 (285)
T d1mgpa_         155 KNKDFKAIFYVSNFDYLVKGGRVSKFQGFVGNLLKIRVCLHIENGELIPYRKVRGDKKAIEALIEKLREDTPE--GSKLR  232 (285)
T ss_dssp             HTTCEEEEEEESCTHHHHHHTCC---------CTTEEEEEEEETTEEEEEEEEESHHHHHHHHHHHHHTTSCT--TCEEE
T ss_pred             HCCEEEEEEEECCHHHHHHCCEEHHHHHHHHHHHCCEEEEEECCCEEEEEEEEHHHHHHHHHHHHHHHHHHCC--CCCEE
T ss_conf             4370699999188899975890168899988763654778943986999877511889999999999986215--89719


Q ss_pred             EEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEEEEE
Q ss_conf             999844998999999999998738622226898626556753054509999984
Q T0641           238 VSVGYGYDKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLGVIR  291 (296)
Q Consensus       238 i~i~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gpg~igi~~~~  291 (296)
                      +.+.|+++++++++|.+++++.++.  .++.+.++||++++|+|||++|+++..
T Consensus       233 ~~i~~~~~~e~a~~l~~~l~~~~~~--~~i~~~~~~~~i~~h~Gpga~gv~i~~  284 (285)
T d1mgpa_         233 VIGVHADNEAGVVELLNTLRKSYEV--VDEIISPMGKVITTHVGPGTVGFGIEV  284 (285)
T ss_dssp             EEEEESSCHHHHHHHHHHHTTTSEE--EEEEEEECCHHHHHHHCTTCEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCC--CCEEEEECCCEEEEEECCCEEEEEEEE
T ss_conf             9999698999999999999856799--869999806299996138829999997


No 4  
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=93.16  E-value=0.3  Score=25.85  Aligned_cols=75  Identities=16%  Similarity=0.210  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             98999999999986589499997-14554357899999999999747898089982656679999999999999974899
Q T0641            69 SVESYADVFRSFVEQGFPVVCFT-ITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLS  147 (296)
Q Consensus        69 s~~~~~~~~~~~~~~g~~vi~i~-iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s  147 (296)
                      ++..+.+..++.  .++.++.+. +.|    ...++    +++.++ .+.+|+++|.-.+     ..++.|+..+..|.+
T Consensus        45 ~~~~I~~~I~~~--~~~GvlvlvDmGS----~~~~~----e~~~e~-~~~~v~ii~~p~t-----egal~Aa~~a~~g~~  108 (123)
T d3ct6a1          45 SFDRVMNAIEEN--EADNLLTFFDLGS----ARMNL----DLVSEM-TDKELTIFNVPLI-----EGAYTASALLEAGAT  108 (123)
T ss_dssp             CHHHHHHHHHHS--SCSEEEEEESSGG----GHHHH----HHHHHT-CSSEEEECCSCHH-----HHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHC--CCCCEEEEEECCH----HHHHH----HHHHHH-HCCCEEEECCCHH-----HHHHHHHHHHHCCCC
T ss_conf             999999999852--8897799984553----99999----999986-2898899857638-----999999999867999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999887
Q T0641           148 FEQAMSKLDALM  159 (296)
Q Consensus       148 ~~ei~~~l~~~~  159 (296)
                      +++|.+.+++..
T Consensus       109 leeI~~~~~~~~  120 (123)
T d3ct6a1         109 FEAIKEQLEKML  120 (123)
T ss_dssp             HHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999865


No 5  
>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK {Escherichia coli [TaxId: 562]}
Probab=76.99  E-value=2.4  Score=19.89  Aligned_cols=145  Identities=12%  Similarity=0.106  Sum_probs=95.3

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE-------C-----CHHHHHHH
Q ss_conf             23689899999999998658949999714554357899999999999747898089982-------6-----56679999
Q T0641            65 TSLPSVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVID-------S-----KQNTVTQA  132 (296)
Q Consensus        65 TS~ps~~~~~~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViD-------S-----~~~s~~~g  132 (296)
                      -+.||+..+.++.+.. +.+.-||+|-  .--+|=.=|.-+|+++...+.-+.+..+++       +     |-.-+|.-
T Consensus        69 FaSPs~~qI~~aik~v-~~~~GvLliv--~NYtGDvlNF~mA~E~a~~egi~v~~vvv~DDva~~~~~~~~gRRG~AGtv  145 (347)
T d1oi2a_          69 FTSPTPDKIFECAMQV-DGGEGVLLII--KNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTV  145 (347)
T ss_dssp             TSCCCHHHHHHHHHHH-CCSSCEEEEE--ESSHHHHHHHHHHHHHHHHTTCCEEEEEECCBCSCBSCTTCSSBCCCTHHH
T ss_pred             CCCCCHHHHHHHHHHH-CCCCCEEEEE--CCCHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf             4688768999999963-3899889996--265021116799999999659866999958854568765434577652378


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEEEE------
Q ss_conf             99999999997489999999999988741669999837588752697417899998875475289998786899------
Q T0641           133 LLIDQFVRMLEDGLSFEQAMSKLDALMASARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGL------  206 (296)
Q Consensus       133 ~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i~~------  206 (296)
                      ++-.-|-.++++|.+++||.+..++..+++.+.-+--+-      .-++...         +|...+.+|+++.      
T Consensus       146 lv~KiaGAaAe~G~~Ldev~~~a~~~~~~~~Tigvals~------c~vP~~g---------~~~f~L~~~emE~GmGIHG  210 (347)
T d1oi2a_         146 LIEKLVGAAAERGDSLDACAELGRKLNNQGHSIGIALGA------CTVPAAG---------KPSFTLADNEMEFGVGIHG  210 (347)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHTTEEEEEEEEEC------C--------------------CCTTEEEETCCTTS
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECC------CCCCCCC---------CCCCCCCCCCEECCCCCCC
T ss_conf             999999999863999999999999998621456677047------7788889---------9775249985232655369


Q ss_pred             -----EEEECCHHHHHHHHHHHHHHH
Q ss_conf             -----775156799999999999999
Q T0641           207 -----GGIGRNRNKLKNSVLQVAKKY  227 (296)
Q Consensus       207 -----~~k~R~~kka~~~~~~~~~~~  227 (296)
                           ..+..+.+...+.|++.+...
T Consensus       211 EpG~~r~~~~~a~~lv~~m~~~ll~~  236 (347)
T d1oi2a_         211 EPGIDRRPFSSLDQTVDEMFDTLLVN  236 (347)
T ss_dssp             CCCSEEEECCCHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             98754667899899999999999723


No 6  
>d1un8a4 c.119.1.2 (A:1-335) Dihydroxyacetone kinase {Citrobacter freundii [TaxId: 546]}
Probab=71.84  E-value=3.2  Score=19.07  Aligned_cols=203  Identities=12%  Similarity=-0.007  Sum_probs=118.0

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEE---EEC--------CHHHHHHHH
Q ss_conf             236898999999999986589499997145543578999999999997478980899---826--------566799999
Q T0641            65 TSLPSVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICV---IDS--------KQNTVTQAL  133 (296)
Q Consensus        65 TS~ps~~~~~~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~V---iDS--------~~~s~~~g~  133 (296)
                      -+.|++..+.++.+.. ..+.-||++-  .--+|-.=|.-+|+++...+-  .+|..   -|-        |-.-+|.-+
T Consensus        83 FaSPs~~~I~~aikav-~~~~GvL~iv--~NYtGDvlNF~mA~E~a~~~G--i~v~~v~v~DDva~~~~~~rRGlAGtvl  157 (335)
T d1un8a4          83 FASPSVDAVLTAIQAV-TGEAGCLLIV--KNYTGDRLNFGLAAEKARRLG--YNVEMLIVGDDISLPDNKHPRGIAGTIL  157 (335)
T ss_dssp             TSCCCHHHHHHHHHHH-CCTTCEEEEE--ESCHHHHHHHHHHHHHHHHTT--CCEEEEEECCBCSCTTCSSCCCCTTHHH
T ss_pred             CCCCCHHHHHHHHHHH-CCCCCEEEEE--EECCCCCCCHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCCHHH
T ss_conf             4788999999999951-6899789995--214021046899999987137--8657997466457888888861230769


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEEEE-------
Q ss_conf             9999999997489999999999988741669999837588752697417899998875475289998786899-------
Q T0641           134 LIDQFVRMLEDGLSFEQAMSKLDALMASARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGL-------  206 (296)
Q Consensus       134 lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i~~-------  206 (296)
                      +-.-|-.++++|.+++|+.+..++..+++++.-+--+--.+=-.|+               |-..+.+|+++.       
T Consensus       158 v~KiaGAaAe~G~sL~ev~~~~~~~~~~~~Tigval~~c~vP~~~~---------------~~f~l~~~e~E~GmGIHGE  222 (335)
T d1un8a4         158 VHKIAGYFAERGYNLATVLREAQYAASNTFSLGVALSSCHLPQETD---------------AAPRHHPGHAELGMGIHGE  222 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHTEEEEEEEEECCCCSSCCS---------------SSCCBCTTCEEETCCTTCC
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCC---------------CCCCCCCCCEEEECCCCCC
T ss_conf             9999999997297789999999999961646752026776888898---------------7776799817760144688


Q ss_pred             ----EEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE--CCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEE
Q ss_conf             ----775156799999999999999741489826999984--49989999999999987386222268986265567530
Q T0641           207 ----GGIGRNRNKLKNSVLQVAKKYLDENNKDNFIVSVGY--GYDKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHT  280 (296)
Q Consensus       207 ----~~k~R~~kka~~~~~~~~~~~~~~~~~~~~~i~i~~--~~~~e~~~~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~  280 (296)
                          ..+..+.+...+.|++.+....+.  .+.+.+.+-.  +-...|..-+.+++.+.+......+. ...|.-+++-=
T Consensus       223 pG~~r~~~~~a~eiv~~l~~~l~~~~~~--gd~v~llVN~LG~ts~lEl~i~~~~v~~~L~~~~i~v~-~~~G~~~TSld  299 (335)
T d1un8a4         223 PGASVIDTQNSAQVVNLMVDKLLAALPE--TGRLAVMINNLGGVSVAEMAIITRELASSPLHSRIDWL-IGPASLVTALD  299 (335)
T ss_dssp             CCSEEESCCBHHHHHHHHHHHHHHHSCS--SCCEEEEEEECBCSCHHHHHHHHHHHHTSTTGGGEEEE-EEEECSSCCTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEE-EEEEEEECCCC
T ss_conf             7745678899999999999998613589--98089998489997399999999999999985597099-97530527668


Q ss_pred             CCCEEEEEEEE
Q ss_conf             54509999984
Q T0641           281 GPYPIGLGVIR  291 (296)
Q Consensus       281 Gpg~igi~~~~  291 (296)
                      .+ .+++..++
T Consensus       300 m~-G~SlTll~  309 (335)
T d1un8a4         300 MK-GFSLTAIV  309 (335)
T ss_dssp             BE-EEEEEEEE
T ss_pred             CC-CEEEEEEE
T ss_conf             98-70899995


No 7  
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis [TaxId: 1423]}
Probab=52.32  E-value=7.2  Score=16.77  Aligned_cols=120  Identities=17%  Similarity=0.119  Sum_probs=74.5

Q ss_pred             ECCCCHHHHHHHHHHHHHCCC-CEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             236898999999999986589-499997145543-578999999999997478980899826566799999999999999
Q T0641            65 TSLPSVESYADVFRSFVEQGF-PVVCFTITTLFS-GSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRML  142 (296)
Q Consensus        65 TS~ps~~~~~~~~~~~~~~g~-~vi~i~iSs~lS-gty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~  142 (296)
                      -+.|+++   ++++++.++|. +++.+++.-.-| .|..++........++.+..++++|++..--.+.--...      
T Consensus        87 y~~P~i~---~~l~~l~~~g~~~ii~lpLyPqyS~~T~~s~~~~~~~~~~~~~~~~~~~I~~~~~~p~yi~a~a------  157 (309)
T d2hk6a1          87 HIEPFIE---DAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWV------  157 (309)
T ss_dssp             SSSSBHH---HHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHHHHCSCEEEECCCCTTCHHHHHHHH------
T ss_pred             CCCCCHH---HHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH------
T ss_conf             1566187---7999998448854025665553265640269999999985255775599656578834899999------


Q ss_pred             HCCCCHHHHHHHHH----HHHHCCEEEEEECCHH-HHHHCC-----CCHHHHHHHHHHHCCCEE-EEE
Q ss_conf             74899999999999----8874166999983758-875269-----741789999887547528-999
Q T0641           143 EDGLSFEQAMSKLD----ALMASARIFFTVGSLD-YLKMGG-----RIGKVATAATGKLGVKPV-IIM  199 (296)
Q Consensus       143 ~~G~s~~ei~~~l~----~~~~~~~~~f~v~~L~-~L~kgG-----Ris~~~~~ig~lL~IkPI-l~~  199 (296)
                            +.|.+.++    ..++.....|.-..+- .-.++|     .+-.++..++..|+..+. +.+
T Consensus       158 ------~~I~~~~~~~~~~~~~~~~llfS~HgiP~~~~~~gdpY~~~~~~t~~~i~~~l~~~~~~~~f  219 (309)
T d2hk6a1         158 ------DRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAVGW  219 (309)
T ss_dssp             ------HHHHHHHHHSCHHHHTSEEEEEEEECCBGGGGGGTCCHHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred             ------HHHHHHHHHCCHHHCCCCEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             ------99999998586431686348612655524466459961899999999999864876069987


No 8  
>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}
Probab=50.93  E-value=4.8  Score=17.94  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=16.7

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             236898999999999986589499997
Q T0641            65 TSLPSVESYADVFRSFVEQGFPVVCFT   91 (296)
Q Consensus        65 TS~ps~~~~~~~~~~~~~~g~~vi~i~   91 (296)
                      .|.|-++ ..++++.+.+.|.+|+++|
T Consensus        84 ~A~p~pg-a~~fl~~~~~~Gv~IfyVT  109 (209)
T d2b82a1          84 FSIPKEV-ARQLIDMHVRRGDAIFFVT  109 (209)
T ss_dssp             GCEECHH-HHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCHH-HHHHHHHHHHCCCEEEEEE
T ss_conf             4676624-9999999997597499993


No 9  
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=50.45  E-value=7  Score=16.87  Aligned_cols=125  Identities=15%  Similarity=0.157  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHCCCC-EEEEEECCCCCHHHHHHHH-HHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999865894-9999714554357899999-99999974----789808998265667999999999999997
Q T0641            70 VESYADVFRSFVEQGFP-VVCFTITTLFSGSYNSAIN-AKSLVLED----YPDANICVIDSKQNTVTQALLIDQFVRMLE  143 (296)
Q Consensus        70 ~~~~~~~~~~~~~~g~~-vi~i~iSs~lSgty~~a~~-a~~~~~~~----~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~  143 (296)
                      -.++.++.+-+....-. ++.+.-+. . |--.-+.. |......+    ..+.+|+.+|....-.|..+          
T Consensus        24 d~Ei~~l~~iL~r~~k~n~lLVG~~G-v-GKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~----------   91 (268)
T d1r6bx2          24 EKELERAIQVLCRRRKNNPLLVGESG-V-GKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY----------   91 (268)
T ss_dssp             HHHHHHHHHHHTSSSSCEEEEECCTT-S-SHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCC----------
T ss_pred             HHHHHHHHHHHHCCCCCCCEEECCCC-C-CHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECHHHCCCCC----------
T ss_conf             99999999999547668967988898-8-67799999999998178450003541278640567506763----------


Q ss_pred             CCCCHHHHH-HHHHHHHHCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCEEEEEEEEC
Q ss_conf             489999999-99998874166999983758875269741789999887547528999878689977515
Q T0641           144 DGLSFEQAM-SKLDALMASARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMKDGDIGLGGIGR  211 (296)
Q Consensus       144 ~G~s~~ei~-~~l~~~~~~~~~~f~v~~L~~L~kgGRis~~~~~ig~lL~IkPIl~~~~G~i~~~~k~R  211 (296)
                       .-.+++-. ..++.+...-...+++|++..|...|+-++...-++++|  ||.|.  .|++.+++-+.
T Consensus        92 -~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~L--kp~L~--rg~i~vIgatT  155 (268)
T d1r6bx2          92 -RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLI--KPLLS--SGKIRVIGSTT  155 (268)
T ss_dssp             -SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHH--SSCSS--SCCCEEEEEEC
T ss_pred             -CHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCCCCCCCHHHHH--HHHHH--CCCCEEEEECC
T ss_conf             -005899999999986126784688433698862777788641179876--48874--79875999579


No 10 
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}
Probab=45.60  E-value=9.2  Score=16.09  Aligned_cols=144  Identities=16%  Similarity=0.181  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             89899999998357886232368989999999999865894999971455435789999999999974789808998265
Q T0641            46 ITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSK  125 (296)
Q Consensus        46 i~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~  125 (296)
                      .+.+++.+++.+. +..|---..+.++..+.-+.+.+.|-.++=+|+.+.      +|..+.+.+.++||+..|      
T Consensus         2 ~~~~~~~~~l~~~-~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~------~a~~~I~~l~~~~p~~~v------   68 (212)
T d1vhca_           2 YTTQQIIEKLREL-KIVPVIALDNADDILPLADTLAKNGLSVAEITFRSE------AAADAIRLLRANRPDFLI------   68 (212)
T ss_dssp             CCHHHHHHHHHHH-CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTST------THHHHHHHHHHHCTTCEE------
T ss_pred             CCHHHHHHHHHHC-CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCH------HHHHHHHHHHHCCCCCEE------
T ss_conf             7589999999879-989999689999999999999987998899957881------589999999862887347------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCH-------HHHHHHHHH-HHHCCEEEEEECCHHHHHHCC-C--------CHHHHHHHH
Q ss_conf             66799999999999999748999-------999999998-874166999983758875269-7--------417899998
Q T0641           126 QNTVTQALLIDQFVRMLEDGLSF-------EQAMSKLDA-LMASARIFFTVGSLDYLKMGG-R--------IGKVATAAT  188 (296)
Q Consensus       126 ~~s~~~g~lv~~a~~l~~~G~s~-------~ei~~~l~~-~~~~~~~~f~v~~L~~L~kgG-R--------is~~~~~ig  188 (296)
                        +.|.-+-...+.+.++.|.+|       +++.+...+ -....-..++|...-...+-| +        .......+-
T Consensus        69 --GaGTV~~~~~~~~a~~aGa~FivSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vK~FPA~~~gG~~~lk  146 (212)
T d1vhca_          69 --AAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIK  146 (212)
T ss_dssp             --EEESCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHHTTCCEECEECSHHHHHHHHHTTCCEEEETTTTTTTHHHHHH
T ss_pred             --EEEECCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHH
T ss_conf             --663146589999998617868977888799999998559971688688899999998799979975543222489999


Q ss_pred             HHHCCCEEEEEE-CCEE
Q ss_conf             875475289998-7868
Q T0641           189 GKLGVKPVIIMK-DGDI  204 (296)
Q Consensus       189 ~lL~IkPIl~~~-~G~i  204 (296)
                      .+...-|=+.|- -|.+
T Consensus       147 al~~p~p~~~~~ptGGV  163 (212)
T d1vhca_         147 ALLGPYAQLQIMPTGGI  163 (212)
T ss_dssp             HHHTTTTTCEEEEBSSC
T ss_pred             HHHCCCCCCEEEECCCC
T ss_conf             87561348728853898


No 11 
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.61  E-value=3.9  Score=18.57  Aligned_cols=54  Identities=19%  Similarity=0.246  Sum_probs=39.8

Q ss_pred             CCEEEEEECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCC
Q ss_conf             821899950578999899986498798999998894786078768989999999835788
Q T0641             2 NAMYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKL   61 (296)
Q Consensus         2 ~~mi~IitDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~   61 (296)
                      +..+.|+++|-.+|-..-.++++|.- |+.+..     +.||.+++.|+||+-+..+..+
T Consensus        46 s~rkGV~A~SL~EL~~K~~~~L~i~~-~~~lvL-----eeDGT~Vd~EeYFqtL~~nT~l   99 (122)
T d1d4ba_          46 TIRKGLTAATRQELLAKALETLLLNG-VLTLVL-----EEDGTAVDSEDFFQLLEDDTCL   99 (122)
T ss_dssp             SCEEEEEECCSSTHHHHHHHHHSCCS-SCEEEE-----TTTTEEECSTHHHHHSSSCCCC
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCC-CEEEEE-----ECCCCEECCHHHHHCCCCCCEE
T ss_conf             70565871899999999999839998-738999-----4799798742676426789799


No 12 
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.35  E-value=11  Score=15.67  Aligned_cols=82  Identities=11%  Similarity=0.119  Sum_probs=46.8

Q ss_pred             HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             86589499997145543578999999999997478980899826566799999999999999748999999999998874
Q T0641            81 VEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMA  160 (296)
Q Consensus        81 ~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~  160 (296)
                      ..+|.|+..++.+    ++...|..|++.+.+++ +..+.|||-+++..                .+.+.|.+.    ..
T Consensus        12 ~~~G~DitIis~G----~~~~~al~aa~~L~~~~-gi~~~vid~~~l~P----------------lD~~~i~~s----~~   66 (138)
T d2bfdb2          12 IQEGSDVTLVAWG----TQVHVIREVASMAKEKL-GVSCEVIDLRTIIP----------------WDVDTICKS----VI   66 (138)
T ss_dssp             EECCSSEEEEECT----THHHHHHHHHHHHHHHH-CCCEEEEECCEEES----------------CCHHHHHHH----HH
T ss_pred             EEECCEEEEEECH----HHHHHHHHHHHHHHHCC-CCCEEEEEECCCCC----------------CCHHHHHHH----HC
T ss_conf             9948809999770----88999999998777407-95526654202355----------------541888887----53


Q ss_pred             CCEEEEEECCHHHHHHCCCCHHHHHHHHH
Q ss_conf             16699998375887526974178999988
Q T0641           161 SARIFFTVGSLDYLKMGGRIGKVATAATG  189 (296)
Q Consensus       161 ~~~~~f~v~~L~~L~kgGRis~~~~~ig~  189 (296)
                      ++.-.+++++=.  ..||==+.+++.+..
T Consensus        67 kt~~livvee~~--~~gG~gs~i~~~l~~   93 (138)
T d2bfdb2          67 KTGRLLISHEAP--LTGGFASEISSTVQE   93 (138)
T ss_dssp             HHSCEEEEEEEE--STTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCC--CCCCHHHHHHHHHHH
T ss_conf             468699953765--306089999999987


No 13 
>d3b48a1 c.54.1.2 (A:1-132) Uncharacterized protein EF1359 {Enterococcus faecalis [TaxId: 1351]}
Probab=37.89  E-value=5  Score=17.84  Aligned_cols=75  Identities=12%  Similarity=0.066  Sum_probs=43.0

Q ss_pred             HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             99999998658949999714554357899999999999747898089982656679999999999999974899999999
Q T0641            74 ADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMS  153 (296)
Q Consensus        74 ~~~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~  153 (296)
                      .+.++++ ..++.||+++  .=+|||.++.. +.... ++.....|..++.     +.-..+..++.....|.++++|++
T Consensus        52 ~~~i~~~-~~~~gvlvl~--Dl~ggsp~~~~-~~~~~-~~~~~~~I~gvN~-----p~l~~al~~~~~~~~~~~l~ei~~  121 (132)
T d3b48a1          52 IDTINEA-DSDREFLIFA--DLGSAVLSSEL-AFDML-EEDQQKHYHLVDA-----PLVEGAFASAITAGVSDDLTQILA  121 (132)
T ss_dssp             HHHHHHS-CSSCEEEEEE--CSHHHHHHHHH-HHHHS-CHHHHTTEEECCS-----CHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred             HHHHHHC-CCCCCEEEEE--ECCCCCHHHHH-HHHHH-CCCCCEEEEEECH-----HHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             9999950-7899689998--47887513999-99970-5766137876452-----279999999998754999999999


Q ss_pred             HHHHH
Q ss_conf             99988
Q T0641           154 KLDAL  158 (296)
Q Consensus       154 ~l~~~  158 (296)
                      .+.+.
T Consensus       122 ~a~~a  126 (132)
T d3b48a1         122 EAQNA  126 (132)
T ss_dssp             HHHTC
T ss_pred             HHHHH
T ss_conf             99999


No 14 
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=32.35  E-value=15  Score=14.75  Aligned_cols=91  Identities=15%  Similarity=0.181  Sum_probs=51.2

Q ss_pred             HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             86589499997145543578999999999997478980899826566799999999999999748999999999998874
Q T0641            81 VEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMA  160 (296)
Q Consensus        81 ~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~  160 (296)
                      ..+|.++..++.+..    ...|..|++.+.++  +..+.|||-+++..                .+.+.+.    +...
T Consensus        12 ~r~G~dvtiis~G~~----~~~al~aa~~L~~~--gi~~~vid~~~lkP----------------lD~~~i~----~sv~   65 (137)
T d1umdb2          12 RREGKDLTLICYGTV----MPEVLQAAAELAKA--GVSAEVLDLRTLMP----------------WDYEAVM----NSVA   65 (137)
T ss_dssp             EECCSSEEEEECGGG----HHHHHHHHHHHHHT--TCCEEEEECCEEET----------------CCHHHHH----HHHH
T ss_pred             EEECCCEEEEECCHH----HHHHHHHHHCCCCC--CCCEEEEEECCCCC----------------CCHHHHH----HHHH
T ss_conf             991897999974633----32012332001236--85158875024688----------------5204455----7874


Q ss_pred             CCEEEEEECCHHHHHHCCCCHHHHHHHHHH-HC--CCEEEEE
Q ss_conf             166999983758875269741789999887-54--7528999
Q T0641           161 SARIFFTVGSLDYLKMGGRIGKVATAATGK-LG--VKPVIIM  199 (296)
Q Consensus       161 ~~~~~f~v~~L~~L~kgGRis~~~~~ig~l-L~--IkPIl~~  199 (296)
                      ++...+++++  .-..||--+.+.+.+..- ++  ..|+..+
T Consensus        66 kt~~vv~veE--~~~~gg~g~~v~~~l~e~~~~~~~~~i~~~  105 (137)
T d1umdb2          66 KTGRVVLVSD--APRHASFVSEVAATIAEDLLDMLLAPPIRV  105 (137)
T ss_dssp             HHSCEEEEEE--EESTTCHHHHHHHHHHHHHGGGCSSCCEEE
T ss_pred             CCCCEEEEEC--CCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             3485999971--664320477999999986055059980897


No 15 
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=32.23  E-value=15  Score=14.74  Aligned_cols=79  Identities=14%  Similarity=0.145  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHHHHCC---CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9899999999998658---9499997145543578999999999997478980899826566799999999999999748
Q T0641            69 SVESYADVFRSFVEQG---FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDG  145 (296)
Q Consensus        69 s~~~~~~~~~~~~~~g---~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G  145 (296)
                      +++++.+.+++..++.   +.|++++  .-++||..|..  .+ +..++  .+++||---+..     ++++|.....++
T Consensus        40 ~~~~~~~~~~~~i~~~~~~~~vlilt--Dl~GGsp~n~~--~~-~~~~~--~~v~visG~Nlp-----mllea~~~~~~~  107 (129)
T d1pdoa_          40 NAETLIEKYNAQLAKLDTTKGVLFLV--DTWGGSPFNAA--SR-IVVDK--EHYEVIAGVNIP-----MLVETLMARDDD  107 (129)
T ss_dssp             CHHHHHHHHHHHHTTSCCTTCEEEEE--SSTTSHHHHHH--HH-HHTTC--TTEEEEESCCHH-----HHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEEE--ECCCCCHHHHH--HH-HHCCC--CCEEEEECCCHH-----HHHHHHHHHHCC
T ss_conf             99999999999998357899789998--05654316999--99-96249--998999738899-----999999861049


Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             99999999999887
Q T0641           146 LSFEQAMSKLDALM  159 (296)
Q Consensus       146 ~s~~ei~~~l~~~~  159 (296)
                      .+++|+.+.+.+.-
T Consensus       108 ~~~~el~~~~~~~g  121 (129)
T d1pdoa_         108 PSFDELVALAVETG  121 (129)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             99999999999999


No 16 
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=30.62  E-value=16  Score=14.57  Aligned_cols=91  Identities=13%  Similarity=0.220  Sum_probs=52.5

Q ss_pred             HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             86589499997145543578999999999997478980899826566799999999999999748999999999998874
Q T0641            81 VEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMA  160 (296)
Q Consensus        81 ~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~  160 (296)
                      ..+|.++..++.+..    ...|..|++.+.++  +.++.|||-+++..                .+.+.+.+.    ..
T Consensus         6 ~~~G~dvtIis~G~~----~~~al~Aa~~L~~~--gi~~~vid~~~lkP----------------lD~~~i~~~----~~   59 (132)
T d1w85b2           6 KREGKDITIIAYGAM----VHESLKAAAELEKE--GISAEVVDLRTVQP----------------LDIETIIGS----VE   59 (132)
T ss_dssp             EECCSSEEEEECTTH----HHHHHHHHHHHHHT--TCCEEEEECSEEES----------------CCHHHHHHH----HH
T ss_pred             EEECCCEEEEECHHH----HHHHHHHHHHHHHC--CCCEEEEEEECCCC----------------CCHHHHHHH----HH
T ss_conf             980898999978189----99999999999962--98727886412688----------------414566689----86


Q ss_pred             CCEEEEEECCHHHHHHCCCCHHHHHHHHHH--HCC-CEEEEE
Q ss_conf             166999983758875269741789999887--547-528999
Q T0641           161 SARIFFTVGSLDYLKMGGRIGKVATAATGK--LGV-KPVIIM  199 (296)
Q Consensus       161 ~~~~~f~v~~L~~L~kgGRis~~~~~ig~l--L~I-kPIl~~  199 (296)
                      +++..+++++  .-..||=-+.+...+..-  .+. .|+.++
T Consensus        60 kt~~vivveE--~~~~gG~gs~i~~~l~~~~~~~l~~~v~~i   99 (132)
T d1w85b2          60 KTGRAIVVQE--AQRQAGIAANVVAEINERAILSLEAPVLRV   99 (132)
T ss_dssp             HHSCEEEEEE--EETTSSSHHHHHHHHHHHHGGGCSSCCEEE
T ss_pred             CCCCEEEEEC--CCCCCCHHHHHHHHHHHHCHHCCCCCEEEE
T ss_conf             0487068750--552034799999999984433059982896


No 17 
>d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.82  E-value=17  Score=14.25  Aligned_cols=28  Identities=14%  Similarity=0.115  Sum_probs=14.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCCC-EEEEEEC
Q ss_conf             368989999999999865894-9999714
Q T0641            66 SLPSVESYADVFRSFVEQGFP-VVCFTIT   93 (296)
Q Consensus        66 S~ps~~~~~~~~~~~~~~g~~-vi~i~iS   93 (296)
                      +-.+.+++.+.|..+...+++ ...+|++
T Consensus        11 ~eit~eeY~~FYk~l~~~~~~Pl~~iH~~   39 (256)
T d1usua_          11 SDITQEEYNAFYKSISNDWEDPLYVKHFS   39 (256)
T ss_dssp             GGCCHHHHHHHHHHHHCCSSCCSEEEEEE
T ss_pred             HHCCHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             24999999999986247755872268753


No 18 
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Probab=26.10  E-value=19  Score=14.06  Aligned_cols=37  Identities=8%  Similarity=0.190  Sum_probs=21.0

Q ss_pred             EEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9826566799999999999999748999999999998
Q T0641           121 VIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDA  157 (296)
Q Consensus       121 ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~  157 (296)
                      ...||-.+..+.+.+.+....+.++.+.++..+.+..
T Consensus        82 L~saRPTAVNL~wAv~r~~~~l~~~~~~e~~~~~l~~  118 (340)
T d1t9ka_          82 LARTRPTAVNLFWALNRMEKVFFENADRENLFEILEN  118 (340)
T ss_dssp             HHTSCSSCTHHHHHHHHHHHHHHTTTTCTTHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             8746744557999999998865313444779999999


No 19 
>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]}
Probab=26.05  E-value=13  Score=15.14  Aligned_cols=68  Identities=13%  Similarity=0.077  Sum_probs=27.7

Q ss_pred             ECCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHCC
Q ss_conf             5057899989998649879899999889478607876898999999983578862323689899999999998658
Q T0641             9 SDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQG   84 (296)
Q Consensus         9 tDSt~dl~~~~~~~~~I~vvPl~I~~~g~~~y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~~~~g   84 (296)
                      -||.+-+-..+++++++.+....+.-|+..      ++  .+..++..++.+...+|.-.|++...-+.+-+.+.|
T Consensus        25 ~dsN~~~l~~~l~~~G~~v~~~~~v~Dd~~------~i--~~~l~~~~~~~DivittGG~s~g~~D~~~~~l~~~G   92 (149)
T d2nqra3          25 YDTNRLAVHLMLEQLGCEVINLGIIRDDPH------AL--RAAFIEADSQADVVISSGGVSVGEADYTKTILEELG   92 (149)
T ss_dssp             ECCHHHHHHHHHHHTTCEEEEEEEECSSHH------HH--HHHHHHHHHHCSEEEECSSSCSSSCSHHHHHHHHHS
T ss_pred             EECCHHHHHHHHHHCCEEEEECCCCCCHHH------HH--HHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf             626468888645332259999141087499------99--999874034558899807866781488999999759


No 20 
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} SCOP: d1r71b_ d1r71d_ d1r71c_
Probab=25.90  E-value=17  Score=14.34  Aligned_cols=51  Identities=14%  Similarity=0.076  Sum_probs=33.4

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHH----HCCEEEEEECCHHHHHHCCCCHHHHH
Q ss_conf             9999999974899999999999887----41669999837588752697417899
Q T0641           135 IDQFVRMLEDGLSFEQAMSKLDALM----ASARIFFTVGSLDYLKMGGRIGKVAT  185 (296)
Q Consensus       135 v~~a~~l~~~G~s~~ei~~~l~~~~----~~~~~~f~v~~L~~L~kgGRis~~~~  185 (296)
                      +....+|++.|++.++|.+.+..-+    ......=.|+.+..+...|+|+...+
T Consensus        20 A~a~~rl~~~g~t~~eiA~~lGks~s~Vs~~l~Ll~lp~~i~~~l~~g~i~~~~a   74 (114)
T d1r71a_          20 ADFIGRELAKGKKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFNTGRVRDVTV   74 (114)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHHTTSCCCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHH
T ss_conf             9999999884168889999984138999999988468888899987589887999


No 21 
>d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]}
Probab=25.82  E-value=19  Score=14.02  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=12.2

Q ss_pred             CCHHHHHHHHHHHCCCEEEEEE
Q ss_conf             7417899998875475289998
Q T0641           179 RIGKVATAATGKLGVKPVIIMK  200 (296)
Q Consensus       179 Ris~~~~~ig~lL~IkPIl~~~  200 (296)
                      .++..+..+...|++++...++
T Consensus        86 ~~P~~a~~v~~~Lgl~~~~~~d  107 (174)
T d1hnja1          86 AFPSAACQIQSMLGIKGCPAFD  107 (174)
T ss_dssp             SSSCHHHHHHHHHTCCSSCEEE
T ss_pred             CCCCHHHHHHHCCCCCCHHHHH
T ss_conf             2021012334226997110222


No 22 
>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.77  E-value=19  Score=14.02  Aligned_cols=96  Identities=15%  Similarity=0.075  Sum_probs=55.1

Q ss_pred             ECCCCHHHHHH-----HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             23689899999-----9999986589499997145543578999999999997478980899826566799999999999
Q T0641            65 TSLPSVESYAD-----VFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFV  139 (296)
Q Consensus        65 TS~ps~~~~~~-----~~~~~~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~  139 (296)
                      -+.....++..     ..+.+...|-+++++++...-..+.+....+.+.+.+..+..+-.+|-++....=.|.++....
T Consensus        52 v~L~~~~E~~~~~~~~~~~~~~~~gi~~~~~p~~D~~~p~~~~~~~~~~~i~~~l~~~~~V~VHC~~G~gRtg~v~~~~L  131 (176)
T d1fpza_          52 FVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKTLIHSYGGLGRSCLVAACLL  131 (176)
T ss_dssp             EECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCTTCCCCHHHHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHH
T ss_pred             EEECCHHHHHHCCCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             99088666333178757999997699799689657772056999999999999997699089994678786089999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHH
Q ss_conf             999748999999999998874
Q T0641           140 RMLEDGLSFEQAMSKLDALMA  160 (296)
Q Consensus       140 ~l~~~G~s~~ei~~~l~~~~~  160 (296)
                      -....|.+.++..+.+...|.
T Consensus       132 i~~~~~~~~~~Ai~~vr~~R~  152 (176)
T d1fpza_         132 LYLSDTISPEQAIDSLRDLRG  152 (176)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHC
T ss_pred             HHHHCCCCHHHHHHHHHHHCC
T ss_conf             997438999999999998589


No 23 
>d1u6ea1 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=24.88  E-value=20  Score=13.91  Aligned_cols=102  Identities=14%  Similarity=0.088  Sum_probs=41.8

Q ss_pred             ECCCCCCCHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHC----CC--C-EEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             60787689899999998357886232368989999999999865----89--4-99997145543578999999999997
Q T0641            40 YRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQ----GF--P-VVCFTITTLFSGSYNSAINAKSLVLE  112 (296)
Q Consensus        40 y~D~~di~~e~~y~~l~~~~~~~pkTS~ps~~~~~~~~~~~~~~----g~--~-vi~i~iSs~lSgty~~a~~a~~~~~~  112 (296)
                      +.+..+.+.+.+.++.--.....+.....+.....++.++++++    -+  + +|+.+-+. --....+|...+..+. 
T Consensus        32 l~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~ma~~Aa~~al~~ag~~~~dIdllI~~t~t~-~~~~p~~A~~v~~~lg-  109 (184)
T d1u6ea1          32 ICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACRRALSNAGLSAADIDGVIVTTNTH-FLQTPPAAPMVAASLG-  109 (184)
T ss_dssp             HTTSSSCCHHHHHHHHCCSEEEECCTTCCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCC-CCSSSCHHHHHHHHHT-
T ss_pred             HHHHHCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC-CCCCCCHHHHHHHCCC-
T ss_conf             99885989899986029447741345885137999999999886026743341899863267-6544216666430124-


Q ss_pred             HCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             4789808998265667999999999999997489
Q T0641           113 DYPDANICVIDSKQNTVTQALLIDQFVRMLEDGL  146 (296)
Q Consensus       113 ~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~  146 (296)
                         ..+..++|-...|.+.-.-+..|..+++.|.
T Consensus       110 ---~~~~~~~di~~~C~g~~~al~~A~~~i~s~~  140 (184)
T d1u6ea1         110 ---AKGILGFDLSAGAAGFGYALGAAADMIRGGG  140 (184)
T ss_dssp             ---CTTSEEEEEECGGGHHHHHHHHHHHHHHHTS
T ss_pred             ---CCCCCCCEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf             ---5742201000013449999998640764499


No 24 
>d1l5ja2 c.8.2.1 (A:161-372) Aconitase B, second N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.70  E-value=20  Score=13.89  Aligned_cols=30  Identities=17%  Similarity=0.269  Sum_probs=20.6

Q ss_pred             HHHHHHHHHCCCCEEEE-----EECCCCCHHHHHH
Q ss_conf             99999998658949999-----7145543578999
Q T0641            74 ADVFRSFVEQGFPVVCF-----TITTLFSGSYNSA  103 (296)
Q Consensus        74 ~~~~~~~~~~g~~vi~i-----~iSs~lSgty~~a  103 (296)
                      .+..+.+.++|..+.+.     +=||+.||+.|-.
T Consensus        60 ~~~i~~lk~kG~~l~~vgdvvGtGSSRkSa~Nsvl   94 (212)
T d1l5ja2          60 IKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVL   94 (212)
T ss_dssp             HHHHHHHHTTSSCEEEEEEEEEESCCCTHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEECCEEECCCCCHHHHHHHH
T ss_conf             99999998469953885140543742222332225


No 25 
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=24.14  E-value=20  Score=13.82  Aligned_cols=41  Identities=12%  Similarity=0.058  Sum_probs=24.3

Q ss_pred             EEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             98265667999999999999997489999999999988741
Q T0641           121 VIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMAS  161 (296)
Q Consensus       121 ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~~  161 (296)
                      ...||-.+..+.+.+.+..+.+.++.+.+++.+.+.+..+.
T Consensus        83 L~~aRPTAVnL~nAl~r~~~~~~~~~s~~~~k~~ll~~a~~  123 (340)
T d1t5oa_          83 LASTRPTAVNLFVGIERALNAALKGESVEEVKELALREAEK  123 (340)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             98537420357999998765322012267788999999999


No 26 
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.62  E-value=21  Score=13.76  Aligned_cols=33  Identities=15%  Similarity=0.209  Sum_probs=17.4

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCH
Q ss_conf             949999714554357899999999999747898089982656
Q T0641            85 FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQ  126 (296)
Q Consensus        85 ~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~  126 (296)
                      |||++|  .+|+||..-++.+|.       .+.+|.|+|.+.
T Consensus         6 yDviVi--GaG~~Gl~~A~~La~-------~G~~V~vlE~~~   38 (297)
T d2bcgg1           6 YDVIVL--GTGITECILSGLLSV-------DGKKVLHIDKQD   38 (297)
T ss_dssp             CSEEEE--CCSHHHHHHHHHHHH-------TTCCEEEECSSS
T ss_pred             CCEEEE--CCCHHHHHHHHHHHH-------CCCCEEEECCCC
T ss_conf             788998--969899999999998-------899899994899


No 27 
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=23.18  E-value=21  Score=13.70  Aligned_cols=80  Identities=10%  Similarity=0.089  Sum_probs=47.2

Q ss_pred             EECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-HHHHHHHHHHHHHC--CCCEE---------------------
Q ss_conf             3236898999999999986589499997145543578-99999999999747--89808---------------------
Q T0641            64 KTSLPSVESYADVFRSFVEQGFPVVCFTITTLFSGSY-NSAINAKSLVLEDY--PDANI---------------------  119 (296)
Q Consensus        64 kTS~ps~~~~~~~~~~~~~~g~~vi~i~iSs~lSgty-~~a~~a~~~~~~~~--~~~~i---------------------  119 (296)
                      ..+.|-++ ..+.+.++.++|+.|+.+|   +.++.+ +...   + .+..+  |-..+                     
T Consensus        18 ~~~kPi~~-~Ie~l~~L~~~G~~IIi~T---aR~~~~~~~t~---~-wL~~~~i~yd~i~~~~~~~~~~~~~~~~Kp~ad   89 (122)
T d2obba1          18 RIGEEIPF-AVETLKLLQQEKHRLILWS---VREGELLDEAI---E-WCRARGLEFYAANKDYPEEERDHQGFSRKLKAD   89 (122)
T ss_dssp             SCCCBCTT-HHHHHHHHHHTTCEEEECC---SCCHHHHHHHH---H-HHHTTTCCCSEESSSSTTC---CCSCCSSCCCS
T ss_pred             CCCCCCHH-HHHHHHHHHHCCCEEEEEE---CCCCCCHHHHH---H-HHHHCCCCCEEHHCCCCCCCCCCCEECCCCCCC
T ss_conf             63664599-9999999998799699993---58886538899---9-999819983450105766866442132784414


Q ss_pred             EEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             9982656679999999999999974899999999
Q T0641           120 CVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMS  153 (296)
Q Consensus       120 ~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~  153 (296)
                      ..||-|++..-..+-  .+.+++++.+|++++.+
T Consensus        90 ~yIDDKai~~~~~w~--~~~~~i~~~~~~~d~~~  121 (122)
T d2obba1          90 LFIDDRNVGGIPDWG--IIYEMIKEKKTFADIYS  121 (122)
T ss_dssp             EEECTTSTTCCCCHH--HHHHHHHHTCCHHHHHC
T ss_pred             EEEECCCCCCCCCHH--HHHHHHHCCCCHHHHHC
T ss_conf             898578556778889--99999971664756642


No 28 
>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus faecalis [TaxId: 1351]}
Probab=22.00  E-value=22  Score=13.55  Aligned_cols=36  Identities=14%  Similarity=-0.064  Sum_probs=17.1

Q ss_pred             HHHHHHHHHCCCCCCEEEEEEECCEEEEEECCCEEEEE
Q ss_conf             99999998738622226898626556753054509999
Q T0641           251 EFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLG  288 (296)
Q Consensus       251 ~~~~~l~~~~~~~~~~~~~~~i~~vi~~H~Gpg~igi~  288 (296)
                      +.++.+++.||.+  ++.-....+++.-+.|-.|+...
T Consensus       325 ~Al~~l~~~fP~r--~Vv~I~~~~i~~~gG~iHCiT~q  360 (364)
T d2jera1         325 LALEQVQTMFPDK--KIVGVNTVEVVYGGGNIHXITQQ  360 (364)
T ss_dssp             HHHHHHHHHSTTS--EEEEEECHHHHTTTCCTGGGCEE
T ss_pred             HHHHHHHHHCCCC--EEEEEECHHHHHCCCCCCHHHHC
T ss_conf             9999999888899--79997108987569801446312


No 29 
>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}
Probab=21.53  E-value=23  Score=13.49  Aligned_cols=11  Identities=9%  Similarity=0.241  Sum_probs=4.5

Q ss_pred             CCHHHHHHHHH
Q ss_conf             89899999999
Q T0641            68 PSVESYADVFR   78 (296)
Q Consensus        68 ps~~~~~~~~~   78 (296)
                      -+.+++...+.
T Consensus         8 ~~~~~~~~~l~   18 (117)
T d2fwha1           8 KTVDELNQALV   18 (117)
T ss_dssp             CSHHHHHHHHH
T ss_pred             CCHHHHHHHHH
T ss_conf             68999999999


No 30 
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=21.47  E-value=9.7  Score=15.94  Aligned_cols=51  Identities=16%  Similarity=0.092  Sum_probs=33.0

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHH----CCEEEEEECCHHHHHHCCCCHHHHH
Q ss_conf             99999999748999999999998874----1669999837588752697417899
Q T0641           135 IDQFVRMLEDGLSFEQAMSKLDALMA----SARIFFTVGSLDYLKMGGRIGKVAT  185 (296)
Q Consensus       135 v~~a~~l~~~G~s~~ei~~~l~~~~~----~~~~~f~v~~L~~L~kgGRis~~~~  185 (296)
                      +....+|.+.|.|.++|.+.+.....    .....=.|+.+..+...|.++...+
T Consensus        20 A~a~~~l~~~g~s~~eiA~~~G~s~~~V~~~l~L~~lp~~v~~~~~~g~i~~~~a   74 (114)
T d1r71a_          20 ADFIGRELAKGKKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFNTGRVRDVTV   74 (114)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHHTTSCCCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHH
T ss_conf             9999999880998999999977729999999999679999999999499878999


No 31 
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.41  E-value=23  Score=13.47  Aligned_cols=91  Identities=12%  Similarity=0.104  Sum_probs=51.4

Q ss_pred             HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             86589499997145543578999999999997478980899826566799999999999999748999999999998874
Q T0641            81 VEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMA  160 (296)
Q Consensus        81 ~~~g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G~s~~ei~~~l~~~~~  160 (296)
                      ..+|.++..++.++.+    ..|..|++.+.+  .+..+.|||-+++..                .+.+.+.    +...
T Consensus        10 ~~~G~ditiis~G~~~----~~al~aa~~L~~--~gi~~~vid~~~lkP----------------ld~~~i~----~~~~   63 (138)
T d2ozlb2          10 ERQGTHITVVSHSRPV----GHCLEAAAVLSK--EGVECEVINMRTIRP----------------MDMETIE----ASVM   63 (138)
T ss_dssp             EECCSSEEEEECSTHH----HHHHHHHHHHHT--TTCCEEEEECCEEET----------------CCHHHHH----HHHH
T ss_pred             EEECCCEEEEECCHHH----HHHHHHHHHHCC--CCCCEEEEEECCCCC----------------CCCHHHH----HHHC
T ss_conf             9948989999746788----857887542001--571338987403468----------------7403242----2322


Q ss_pred             CCEEEEEECCHHHHHHCCCCHHHHHHHHH--HHC--CCEEEEE
Q ss_conf             16699998375887526974178999988--754--7528999
Q T0641           161 SARIFFTVGSLDYLKMGGRIGKVATAATG--KLG--VKPVIIM  199 (296)
Q Consensus       161 ~~~~~f~v~~L~~L~kgGRis~~~~~ig~--lL~--IkPIl~~  199 (296)
                      ++...+++++=.  ..||==+-..+.+..  .+.  =.|+.++
T Consensus        64 k~~~iivvee~~--~~gG~gs~i~~~l~e~~~~~~l~~~v~ri  104 (138)
T d2ozlb2          64 KTNHLVTVEGGW--PQFGVGAEICARIMEGPAFNFLDAPAVRV  104 (138)
T ss_dssp             HHSCEEEECSSC--STTCHHHHHHHHHHHSTTGGGCSSCCEEE
T ss_pred             CCCCEEEEECCC--CCCHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             555127861464--21118899999987623344136860897


No 32 
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=20.08  E-value=24  Score=13.29  Aligned_cols=80  Identities=14%  Similarity=0.150  Sum_probs=52.5

Q ss_pred             CHHHHHHHHHHHHHC---CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             989999999999865---89499997145543578999999999997478980899826566799999999999999748
Q T0641            69 SVESYADVFRSFVEQ---GFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDG  145 (296)
Q Consensus        69 s~~~~~~~~~~~~~~---g~~vi~i~iSs~lSgty~~a~~a~~~~~~~~~~~~i~ViDS~~~s~~~g~lv~~a~~l~~~G  145 (296)
                      +++++.+.+++..++   ++.+++++  .=++||-.|+.  ++ +..++  .+++|+---+..+     ++++......+
T Consensus        40 ~~~~~~~~i~~~i~~~~~~~gvlilt--Dl~Ggtp~n~a--~~-~~~~~--~~v~visGvNlpm-----lle~~~~~~~~  107 (129)
T d1pdoa_          40 NAETLIEKYNAQLAKLDTTKGVLFLV--DTWGGSPFNAA--SR-IVVDK--EHYEVIAGVNIPM-----LVETLMARDDD  107 (129)
T ss_dssp             CHHHHHHHHHHHHTTSCCTTCEEEEE--SSTTSHHHHHH--HH-HHTTC--TTEEEEESCCHHH-----HHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEEE--ECCCCCHHHHH--HH-HHHCC--CCEEEEECCCHHH-----HHHHHHHHCCC
T ss_conf             98999999999998547999889896--42122259999--99-98579--9869983499899-----99999843259


Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             999999999998874
Q T0641           146 LSFEQAMSKLDALMA  160 (296)
Q Consensus       146 ~s~~ei~~~l~~~~~  160 (296)
                      .+++|+.+.+.+.-.
T Consensus       108 ~~~~el~~~~~~~g~  122 (129)
T d1pdoa_         108 PSFDELVALAVETGR  122 (129)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             998899999999867


Done!