Query T0642 J0KE1, Homo sapiens, 387 residues
Match_columns 387
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 22458
Date Thu Jul 22 14:50:16 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0642.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0642.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dzl_A Late major capsid prote 35.5 13 0.0006 15.6 1.8 103 112-229 321-428 (505)
2 2r5k_A Major capsid protein L1 33.6 16 0.00072 15.1 1.9 75 113-201 301-375 (424)
3 1wyz_A Putative S-adenosylmeth 19.5 30 0.0014 13.5 1.2 52 159-214 187-240 (242)
4 2con_A RUH-035 protein, NIN on 13.8 50 0.0022 12.3 1.2 16 170-185 9-24 (79)
5 1fyx_A TOLL-like receptor 2; b 11.9 45 0.002 12.6 0.5 13 28-40 13-25 (149)
6 1oy5_A TRNA (guanine-N(1)-)-me 11.7 58 0.0026 12.0 1.1 14 199-212 107-120 (257)
7 3iyj_F Major capsid protein L1 11.7 58 0.0026 11.9 2.5 76 113-202 319-396 (495)
8 3knu_A TRNA (guanine-N(1)-)-me 11.4 60 0.0027 11.9 1.1 16 199-214 125-140 (253)
9 1ual_A TRNA (guanine-N(1)-)-me 10.4 64 0.0028 11.7 0.8 15 199-213 125-139 (274)
10 2r2y_A Protein ADRM1; proteaso 10.1 66 0.0029 11.6 1.3 73 2-86 81-153 (153)
No 1
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human papillomavirus type 16} SCOP: b.121.6.1
Probab=35.49 E-value=13 Score=15.55 Aligned_cols=103 Identities=25% Similarity=0.386 Sum_probs=55.5
Q ss_pred HHHHHHCEEEEEECCCCCCCE--ECCCCCCHHHHHHHHCCCCCCCCCCHHCCCCCEEEEECCCCCEEEEEECCEEECHHH
Q ss_conf 322320316898537764210--000145412333210135543201010008847898347974478762003210145
Q T0642 112 STSCIENTIFICCENTERSTH--ISTARGETISDIFFERENTANDHASVERYSPECIFICSHAPEWILLCHECKITATTH 189 (387)
Q Consensus 112 stscientificcentersth--istargetisdifferentandhasveryspecificshapewillcheckitatth 189 (387)
.--|-.|.+|+-+-.+-|+|. ||.+... +..-|...|-..-.-.||-|.-..|| .-|||+-|..
T Consensus 321 NGicW~NqlFVTVvDnTR~TNftIsv~~~~--~~~~Y~~~~fk~YlRHvEEyeLsfI~------------QLCkV~Lt~E 386 (505)
T 1dzl_A 321 NGICWGNQLFVTVVDTTRSTNMSLCAAIST--SETTYKNTNFKEYLRHGEEYDLQFIF------------QLCKITLTAD 386 (505)
T ss_dssp CSEEGGGCCEEEEEECSBCCCEEEEEESCS--CCSSCCGGGEEEEEEEEEEEEEEEEE------------EEEEEECCHH
T ss_pred CCEEECCEEEEEEEECCCCCCEEEEEECCC--CCCCCCHHHHHHHHHHHHHEEEEEEE------------EEEEEECCHH
T ss_conf 835776767999886888861799962689--74543577757775443121327476------------8753057899
Q ss_pred HHHHHHCCCCCEEE--EEECCHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 67876416782126--77512023-345666778877777543
Q T0642 190 EMEETINGINPACI--FICGRVEH-AHALASTWCFINALISTS 229 (387)
Q Consensus 190 emeetinginpaci--ficgrveh-ahalastwcfinalists 229 (387)
-| -.|++.||.-+ +--|-+-- ...|..++-||+.+-.+-
T Consensus 387 vl-A~ih~Mnp~ILe~Wnlg~~Ppp~~~leD~YRfi~S~At~C 428 (505)
T 1dzl_A 387 VM-TYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIAC 428 (505)
T ss_dssp HH-HHHHHHCTHHHHHSCCCCCCCTTCCHHHHHHHHHHHHTTC
T ss_pred HH-HHHHCCCCHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 99-9987059016641616741698897543123412502148
No 2
>2r5k_A Major capsid protein L1; HPV11, pentamer, structure, type specific epitope, late protein, virion, viral protein; 3.20A {Human papillomavirus type 11} PDB: 2r5h_A 2r5j_A
Probab=33.63 E-value=16 Score=15.10 Aligned_cols=75 Identities=24% Similarity=0.388 Sum_probs=37.9
Q ss_pred HHHHHCEEEEEECCCCCCCEECCCCCCHHHHHHHHCCCCCCCCCCHHCCCCCEEEEECCCCCEEEEEECCEEECHHHHHH
Q ss_conf 22320316898537764210000145412333210135543201010008847898347974478762003210145678
Q T0642 113 TSCIENTIFICCENTERSTHISTARGETISDIFFERENTANDHASVERYSPECIFICSHAPEWILLCHECKITATTHEME 192 (387)
Q Consensus 113 tscientificcentersthistargetisdifferentandhasveryspecificshapewillcheckitattheme 192 (387)
--|-.|.+|+-+-.+-|+|.++-.-..+-+. -|...|-..-.-.||-|.-..|| .-|||+-|..-|
T Consensus 301 GIcW~NqlFVTVvDnTR~TN~tIs~~~~~~~-~Y~~~~fkeYlRHvEEyeLsfIf------------QLCkV~Lt~Evl- 366 (424)
T 2r5k_A 301 GICWGNHLSVTVVDTTRSTNMTLCASVSKSA-TYTNSDYKEYMRHVEEFDLQFIF------------QLCSITLSAEVM- 366 (424)
T ss_dssp SBCGGGCCEEEEEECTBCCCEEEEEESCTTS-SSCGGGEEEEEEEEEEEEEEEEE------------EEEEEECCHHHH-
T ss_pred CCEECCEEEEEEEECCCCCEEEEEEECCCCC-CCCHHHHHHHHHHHHHEEEEEEE------------EEEEEECCHHHH-
T ss_conf 6333672699988778885489985079756-46767766765444230117376------------885305789999-
Q ss_pred HHHCCCCCE
Q ss_conf 764167821
Q T0642 193 ETINGINPA 201 (387)
Q Consensus 193 etinginpa 201 (387)
..|++.||.
T Consensus 367 a~ih~Mnp~ 375 (424)
T 2r5k_A 367 AYIHTMNPS 375 (424)
T ss_dssp HHHHHHCHH
T ss_pred HHHHCCCHH
T ss_conf 998706902
No 3
>1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast structural genomics consortium, BTR28; 2.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.90.1.1
Probab=19.52 E-value=30 Score=13.55 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=29.3
Q ss_pred HCCCCC-EEEEECCCCCEEEEEECCEEECHHHHHHHHHC-CCCCEEEEEECCHHHHHH
Q ss_conf 000884-78983479744787620032101456787641-678212677512023345
Q T0642 159 ERYSPE-CIFICSHAPEWILLCHECKITATTHEMEETIN-GINPACIFICGRVEHAHA 214 (387)
Q Consensus 159 eryspe-cificshapewillcheckitatthemeetin-ginpacificgrvehaha 214 (387)
+.++|+ -++||..+- .-||--++.+-.++.+.+. +...-+||+-|+|||.|.
T Consensus 187 ~~~~~~t~v~I~~elT----k~~E~i~~gtl~~i~~~i~~~~K~p~Viiig~v~~~~~ 240 (242)
T 1wyz_A 187 QNCRPQTKLCIAANIT----CEGEFIQTRTVKDWKGHIPELSKIPCIFLLYKLEHHHH 240 (242)
T ss_dssp HHSCSSSEEEEEESTT----SSSCEEEEEEHHHHSSCCC---CCCEEEEEEC------
T ss_pred HCCCCCCEEEEEEECC----CCCEEEEEEEHHHHHHHHHHCCCCCEEEEEECEECCCC
T ss_conf 6138997899999586----40669999299999875351279988999977002556
No 4
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=13.76 E-value=50 Score=12.31 Aligned_cols=16 Identities=44% Similarity=0.773 Sum_probs=12.2
Q ss_pred CCCCCEEEEEECCEEE
Q ss_conf 4797447876200321
Q T0642 170 SHAPEWILLCHECKIT 185 (387)
Q Consensus 170 shapewillcheckit 185 (387)
-+.--|+|.||-|--+
T Consensus 9 r~vk~~vLrC~aCf~~ 24 (79)
T 2con_A 9 REARSYILRCHGCFKT 24 (79)
T ss_dssp CCCCCEEEECSSSCCE
T ss_pred HHHHHHHEEEEECCCC
T ss_conf 7775412264233558
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=11.89 E-value=45 Score=12.56 Aligned_cols=13 Identities=54% Similarity=1.035 Sum_probs=9.7
Q ss_pred CCCHHHHHHHHHC
Q ss_conf 2100134342102
Q T0642 28 TERDAYWERELEA 40 (387)
Q Consensus 28 terdaywerelea 40 (387)
.||||||-..|-.
T Consensus 13 serdaywvenlmv 25 (149)
T 1fyx_A 13 SERDAYWVENLMV 25 (149)
T ss_dssp CGGGHHHHHTHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 0222899999999
No 6
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4
Probab=11.71 E-value=58 Score=11.95 Aligned_cols=14 Identities=36% Similarity=0.717 Sum_probs=8.6
Q ss_pred CCEEEEEECCHHHH
Q ss_conf 82126775120233
Q T0642 199 NPACIFICGRVEHA 212 (387)
Q Consensus 199 npacificgrveha 212 (387)
.+.-||||||-|--
T Consensus 107 ~~~liliCGRYEGi 120 (257)
T 1oy5_A 107 KERIMIICGRYEGV 120 (257)
T ss_dssp CSEEEEEECBTTCB
T ss_pred CCCEEEEECCCCCH
T ss_conf 99779995363258
No 7
>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single particle cryo-EM, high resolution, late protein, virion; 4.20A {Bovine papillomavirus type 1}
Probab=11.68 E-value=58 Score=11.95 Aligned_cols=76 Identities=18% Similarity=0.356 Sum_probs=38.7
Q ss_pred HHHHHCEEEEEECCCCCCCEEC--CCCCCHHHHHHHHCCCCCCCCCCHHCCCCCEEEEECCCCCEEEEEECCEEECHHHH
Q ss_conf 2232031689853776421000--01454123332101355432010100088478983479744787620032101456
Q T0642 113 TSCIENTIFICCENTERSTHIS--TARGETISDIFFERENTANDHASVERYSPECIFICSHAPEWILLCHECKITATTHE 190 (387)
Q Consensus 113 tscientificcentersthis--targetisdifferentandhasveryspecificshapewillcheckitatthe 190 (387)
--|-.|.+|+-+-.+-|+|..+ .+...+-.+ -|...|-..-.-.||-|.-.+|| .-|||+-+..-
T Consensus 319 GIcW~NqlFVTVvDnTR~TNftIsv~~~~~~~~-~Y~~s~fkeYlRHvEEyeLsfI~------------QLCkV~Lt~Ev 385 (495)
T 3iyj_F 319 GIAWNNLLFLTVGDNTRGTNLTISVASDGTPLT-EYDSSKFNVYHRHMEEYKLAFIL------------ELCSVEITAQT 385 (495)
T ss_dssp SEEGGGEEEEEEEESSSCCCEEEEEESSSSCCS-SCCTTTEEEEEEEEEEECEEEEE------------EEEEEECCHHH
T ss_pred CEEECCEEEEEEEECCCCCCEEEEEECCCCCCC-CCCHHHHHHHHHHHHHHHEEEEE------------EEEEEECCHHH
T ss_conf 436657579998756778517999857998713-36678899998656451105374------------77530478999
Q ss_pred HHHHHCCCCCEE
Q ss_conf 787641678212
Q T0642 191 MEETINGINPAC 202 (387)
Q Consensus 191 meetinginpac 202 (387)
| -.|++.||.-
T Consensus 386 l-A~ih~Mnp~I 396 (495)
T 3iyj_F 386 V-SHLQGLMPSV 396 (495)
T ss_dssp H-HHHHHHCSSH
T ss_pred H-HHHHHCCHHH
T ss_conf 9-9987058136
No 8
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ}
Probab=11.39 E-value=60 Score=11.89 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=11.6
Q ss_pred CCEEEEEECCHHHHHH
Q ss_conf 8212677512023345
Q T0642 199 NPACIFICGRVEHAHA 214 (387)
Q Consensus 199 npacificgrvehaha 214 (387)
.+.-||||||-|--..
T Consensus 125 ~~~liliCGrYEGiDe 140 (253)
T 3knu_A 125 FDNITLLCGRFEGIDE 140 (253)
T ss_dssp CSEEEEEECCTTCBCH
T ss_pred CCCEEEEEECEEEECH
T ss_conf 7736999713010003
No 9
>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} SCOP: c.116.1.4 PDB: 1uak_A* 1uaj_A* 1uam_A* 1p9p_A*
Probab=10.36 E-value=64 Score=11.73 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=10.5
Q ss_pred CCEEEEEECCHHHHH
Q ss_conf 821267751202334
Q T0642 199 NPACIFICGRVEHAH 213 (387)
Q Consensus 199 npacificgrvehah 213 (387)
.+.-||||||-|--.
T Consensus 125 ~~~liliCGrYEGiD 139 (274)
T 1ual_A 125 NQKLILVCGRYEGID 139 (274)
T ss_dssp CSEEEEECCCTTCCC
T ss_pred CCCEEEEECCEEHHH
T ss_conf 563899965554076
No 10
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, ubiquitin-proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=10.14 E-value=66 Score=11.64 Aligned_cols=73 Identities=19% Similarity=0.391 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 74335786533453478850445443210013434210220135554213431000033210378875555675311112
Q T0642 2 DEARCASPERSTERRIFICNEWSYESTERDAYWERELEASEDTHELASTSEQINTHENINTHCASPPLEASEGETRESTE 81 (387)
Q Consensus 2 dearcaspersterrificnewsyesterdaywereleasedthelastseqintheninthcasppleasegetreste 81 (387)
+++...--+..+.-|+|+-.- -.|..|--||-.|-.+..|..-...--+.||. ||.-++.+..-.+..
T Consensus 81 ~d~~f~~V~~c~tGRVyvLkF--~ss~~r~FFWmQe~~~~~D~~~~~kvN~lLn~----------pp~~~~~~~~g~~~~ 148 (153)
T 2r2y_A 81 DDCEFKRVPQCPSGRVYVLKF--KAGSKRLFFWMQEPKTDQDEEHCRKVNECLNN----------PPMPGSLGASGSSGH 148 (153)
T ss_dssp TSEEEEECTTCTTSCEEEEEE--TTTCCEEEEEECSSSSTTHHHHHHHHHHHHHC-------------------------
T ss_pred CCEEEEECCCCCCCEEEEEEE--CCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC----------CCCCCCCCCCCCCCC
T ss_conf 963899888689972999995--68984168990589965179999999999749----------998763345787754
Q ss_pred CHHHH
Q ss_conf 20122
Q T0642 82 DANDL 86 (387)
Q Consensus 82 dandl 86 (387)
+..+|
T Consensus 149 e~~~l 153 (153)
T 2r2y_A 149 ELSAL 153 (153)
T ss_dssp -----
T ss_pred CCCCC
T ss_conf 33459
Done!