Query T0642 J0KE1, Homo sapiens, 387 residues
Match_columns 387
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 15564
Date Thu Jul 22 14:53:37 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0642.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0642.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dzla_ b.121.6.1 (A:) Papillo 35.7 9.1 0.00059 15.6 1.8 103 112-229 302-409 (455)
2 d1dzla_ b.121.6.1 (A:) Papillo 22.2 22 0.0014 13.5 1.8 102 112-228 302-408 (455)
3 d1vk6a4 g.41.14.1 (A:97-125) N 21.0 13 0.00083 14.7 0.4 13 172-184 13-25 (29)
4 d1vk6a4 g.41.14.1 (A:97-125) N 19.7 14 0.00092 14.5 0.4 13 172-184 13-25 (29)
5 d1oy5a_ c.116.1.4 (A:) tRNA(m1 12.5 38 0.0025 12.1 1.1 14 199-212 104-117 (232)
6 d2cona1 g.41.15.1 (A:8-73) RNA 12.3 34 0.0022 12.4 0.7 15 171-185 3-17 (66)
7 d2cona1 g.41.15.1 (A:8-73) RNA 10.0 46 0.003 11.6 1.2 19 171-191 3-21 (66)
8 d1weqa_ g.50.1.2 (A:) PHD fing 6.7 40 0.0026 12.0 -0.7 17 30-46 3-19 (85)
9 d1uala_ c.116.1.4 (A:) tRNA(m1 6.2 70 0.0045 10.6 1.3 15 199-213 107-121 (252)
10 d1unld_ a.74.1.1 (D:) CDK5 act 6.1 70 0.0045 10.6 1.0 19 21-39 95-119 (150)
No 1
>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human papillomavirus type 16 [TaxId: 333760]}
Probab=35.74 E-value=9.1 Score=15.59 Aligned_cols=103 Identities=25% Similarity=0.385 Sum_probs=56.5
Q ss_pred HHHHHHCEEEEEECCCCCCCEE--CCCCCCHHHHHHHHCCCCCCCCCCHHCCCCCEEEEECCCCCEEEEEECCEEECHHH
Q ss_conf 3223203168985377642100--00145412333210135543201010008847898347974478762003210145
Q T0642 112 STSCIENTIFICCENTERSTHI--STARGETISDIFFERENTANDHASVERYSPECIFICSHAPEWILLCHECKITATTH 189 (387)
Q Consensus 112 stscientificcentersthi--stargetisdifferentandhasveryspecificshapewillcheckitatth 189 (387)
.--|-.|.+|+-+-.+-|+|.. |.+... +..-|.-.|-..-.-.||-|.-..|| .-|||+-|..
T Consensus 302 NGIcW~NqlFVTVvDnTR~TNftIsv~~~~--~~~~Y~a~~fkeYlRHvEEyeLsfIf------------QLCkV~Lt~E 367 (455)
T d1dzla_ 302 NGICWGNQLFVTVVDTTRSTNMSLCAAIST--SETTYKNTNFKEYLRHGEEYDLQFIF------------QLCKITLTAD 367 (455)
T ss_dssp CSEEGGGCCEEEEEECSBCCCEEEEEESCS--CCSSCCGGGEEEEEEEEEEEEEEEEE------------EEEEEECCHH
T ss_pred CCEEECCEEEEEEEECCCCCEEEEEEECCC--CCCCCCHHHHHHHHHHHHHHEEEEEE------------EEEEEECCHH
T ss_conf 715776767999887788864899974689--73442567778987656441005374------------7753047899
Q ss_pred HHHHHHCCCCCEEE--EEECCHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 67876416782126--7751202-3345666778877777543
Q T0642 190 EMEETINGINPACI--FICGRVE-HAHALASTWCFINALISTS 229 (387)
Q Consensus 190 emeetinginpaci--ficgrve-hahalastwcfinalists 229 (387)
-| .-|++.||.-+ +--|-+- -.-.|..++-||+.+-.+-
T Consensus 368 vl-a~ih~Mnp~ILe~WnlG~~Ppp~~sleDtYRyi~S~At~C 409 (455)
T d1dzla_ 368 VM-TYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIAC 409 (455)
T ss_dssp HH-HHHHHHCTHHHHHSCCCCCCCTTCCHHHHHHHHHHHHTTC
T ss_pred HH-HHHHCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 99-9987058336752606740698987322112302403148
No 2
>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human papillomavirus type 16 [TaxId: 333760]}
Probab=22.16 E-value=22 Score=13.47 Aligned_cols=102 Identities=25% Similarity=0.378 Sum_probs=52.7
Q ss_pred HHHHHHCEEEEEECCCCCCCEEC--CCCCCHHHHHHHHCCCCCCCCCCHHCCCCCEEEEECCCCCEEEEEECCEEECHHH
Q ss_conf 32232031689853776421000--0145412333210135543201010008847898347974478762003210145
Q T0642 112 STSCIENTIFICCENTERSTHIS--TARGETISDIFFERENTANDHASVERYSPECIFICSHAPEWILLCHECKITATTH 189 (387)
Q Consensus 112 stscientificcentersthis--targetisdifferentandhasveryspecificshapewillcheckitatth 189 (387)
.--|-.|.+|+-.-.+-|+|..+ .+....- + -+.-.+-..-.-.||.|.-..|| .-|||+-|..
T Consensus 302 NGIcW~NqlFvTvvDnTR~Tn~tIs~~~~~~~-~-~Y~~~~fk~YlRHvEEyeL~fI~------------QLCkV~Lt~e 367 (455)
T d1dzla_ 302 NGICWGNQLFVTVVDTTRSTNMSLCAAISTSE-T-TYKNTNFKEYLRHGEEYDLQFIF------------QLCKITLTAD 367 (455)
T ss_dssp CSEEGGGCCEEEEEECSBCCCEEEEEESCSCC-S-SCCGGGEEEEEEEEEEEEEEEEE------------EEEEEECCHH
T ss_pred CCEEECCEEEEEEEECCCCCEEEEEECCCCCC-C-CCCHHHHHHHHHCCEEEEEEEEE------------EEEEEECCHH
T ss_conf 71566572799975357881289985478886-5-30432344131000246688999------------9855750678
Q ss_pred HHHHHHCCCCCEEE--EEECCHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 67876416782126--77512023-34566677887777754
Q T0642 190 EMEETINGINPACI--FICGRVEH-AHALASTWCFINALIST 228 (387)
Q Consensus 190 emeetinginpaci--ficgrveh-ahalastwcfinalist 228 (387)
-| .-|++.||.-+ +--|-+-- ...|..++-||+.+-.+
T Consensus 368 vl-a~lh~Mnp~ILe~W~lg~~ppp~~~leD~YRyi~S~At~ 408 (455)
T d1dzla_ 368 VM-TYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIA 408 (455)
T ss_dssp HH-HHHHHHCTHHHHHSCCCCCCCTTCCHHHHHHHHHHHHTT
T ss_pred HH-HHHHHCCHHHHHCCCCCEECCCCCCCCCEEEEECCCCCC
T ss_conf 98-886604843751144523678788725224570342334
No 3
>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}
Probab=20.99 E-value=13 Score=14.75 Aligned_cols=13 Identities=38% Similarity=1.196 Sum_probs=10.2
Q ss_pred CCCEEEEEECCEE
Q ss_conf 9744787620032
Q T0642 172 APEWILLCHECKI 184 (387)
Q Consensus 172 apewillchecki 184 (387)
..||-.||+.|+-
T Consensus 13 ktewa~lc~hcre 25 (29)
T d1vk6a4 13 KTEWAMLCSHCRE 25 (29)
T ss_dssp SSSSCEEESSSSC
T ss_pred HHHHHHHHHHHHH
T ss_conf 2458888766541
No 4
>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}
Probab=19.68 E-value=14 Score=14.49 Aligned_cols=13 Identities=38% Similarity=1.196 Sum_probs=10.2
Q ss_pred CCCEEEEEECCEE
Q ss_conf 9744787620032
Q T0642 172 APEWILLCHECKI 184 (387)
Q Consensus 172 apewillchecki 184 (387)
..||..||+.|+-
T Consensus 13 ~tEwa~LC~hC~e 25 (29)
T d1vk6a4 13 KTEWAMLCSHCRE 25 (29)
T ss_dssp SSSSCEEESSSSC
T ss_pred HHHHHHHHHHHHH
T ss_conf 6299999988776
No 5
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]}
Probab=12.47 E-value=38 Score=12.09 Aligned_cols=14 Identities=36% Similarity=0.717 Sum_probs=9.3
Q ss_pred CCEEEEEECCHHHH
Q ss_conf 82126775120233
Q T0642 199 NPACIFICGRVEHA 212 (387)
Q Consensus 199 npacificgrveha 212 (387)
.+.-||||||-|--
T Consensus 104 ~~~liliCGRYEGi 117 (232)
T d1oy5a_ 104 KERIMIICGRYEGV 117 (232)
T ss_dssp CSEEEEEECBTTCB
T ss_pred CCCEEEEECCCCCH
T ss_conf 88489996441047
No 6
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.27 E-value=34 Score=12.37 Aligned_cols=15 Identities=47% Similarity=0.828 Sum_probs=11.2
Q ss_pred CCCCEEEEEECCEEE
Q ss_conf 797447876200321
Q T0642 171 HAPEWILLCHECKIT 185 (387)
Q Consensus 171 hapewillcheckit 185 (387)
+.--|+|.||.|--+
T Consensus 3 ~vk~~iLrC~aCf~~ 17 (66)
T d2cona1 3 EARSYILRCHGCFKT 17 (66)
T ss_dssp CCCCEEEECSSSCCE
T ss_pred CCEEEEEEEEECCEE
T ss_conf 310014677655513
No 7
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.05 E-value=46 Score=11.62 Aligned_cols=19 Identities=47% Similarity=0.817 Sum_probs=13.0
Q ss_pred CCCCEEEEEECCEEECHHHHH
Q ss_conf 797447876200321014567
Q T0642 171 HAPEWILLCHECKITATTHEM 191 (387)
Q Consensus 171 hapewillcheckitatthem 191 (387)
+.--|+|.||.|--+ +.+|
T Consensus 3 ~vr~~~LrC~aCf~~--t~~~ 21 (66)
T d2cona1 3 EARSYILRCHGCFKT--TSDM 21 (66)
T ss_dssp CCCCEEEECSSSCCE--ESCS
T ss_pred HHHEEEEEEEECCCC--CCCC
T ss_conf 552031574255769--6886
No 8
>d1weqa_ g.50.1.2 (A:) PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.71 E-value=40 Score=11.99 Aligned_cols=17 Identities=18% Similarity=-0.042 Sum_probs=11.0
Q ss_pred CHHHHHHHHHCCCHHHH
Q ss_conf 00134342102201355
Q T0642 30 RDAYWERELEASEDTHE 46 (387)
Q Consensus 30 rdaywereleasedthe 46 (387)
+||-||+|-.|-.|-|+
T Consensus 3 ~~ASWEle~nAf~eLl~ 19 (85)
T d1weqa_ 3 SGSSGELEPGAFSELYQ 19 (85)
T ss_dssp CCCCCCCCTTCCCCCSS
T ss_pred CCCCCCCCCCHHHHHHH
T ss_conf 87760427788999863
No 9
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=6.16 E-value=70 Score=10.60 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=10.6
Q ss_pred CCEEEEEECCHHHHH
Q ss_conf 821267751202334
Q T0642 199 NPACIFICGRVEHAH 213 (387)
Q Consensus 199 npacificgrvehah 213 (387)
.+.-||||||-|--.
T Consensus 107 ~~~liliCGrYEGiD 121 (252)
T d1uala_ 107 NQKLILVCGRYEGID 121 (252)
T ss_dssp CSEEEEECCCTTCCC
T ss_pred CCCEEEEECCCHHHH
T ss_conf 562899956510076
No 10
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.14 E-value=70 Score=10.59 Aligned_cols=19 Identities=42% Similarity=0.868 Sum_probs=0.0
Q ss_pred CCCCCC------CCCCHHHHHHHHH
Q ss_conf 044544------3210013434210
Q T0642 21 NEWSYE------STERDAYWERELE 39 (387)
Q Consensus 21 newsye------sterdaywerele 39 (387)
||-||. ...||++|.|-|.
T Consensus 95 nEISYPLKPFLve~~k~~FWdRCl~ 119 (150)
T d1unld_ 95 NEISYPLKPFLVESCKEAFWDRCLS 119 (150)
T ss_dssp SSSCCCSGGGCCSSCHHHHHHHHHH
T ss_pred CCCCCCCCCEEECCCHHHHHHHHHH
T ss_conf 6056677651256657789999999
Done!