Query T0643 3NZL, Homo sapiens, 83 residues
Match_columns 83
No_of_seqs 9 out of 11
Neff 1.6
Searched_HMMs 22458
Date Thu Jul 22 14:52:31 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0643.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/pdb70_15May10_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/pdb70search/T0643.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ict_A Antitoxin HIGA; helix-t 88.3 0.26 1.1E-05 27.5 2.9 51 20-70 7-61 (94)
2 3cec_A Putative antidote prote 84.9 0.5 2.2E-05 26.0 2.9 43 22-64 19-63 (104)
3 3b7h_A Prophage LP1 protein 11 80.4 1.6 7.1E-05 23.3 4.0 51 20-70 6-61 (78)
4 3bd1_A CRO protein; transcript 76.8 2.1 9.2E-05 22.7 3.7 36 33-71 12-47 (79)
5 3g5g_A Regulatory protein; tra 75.3 2.6 0.00012 22.1 3.9 52 19-70 26-81 (99)
6 1zug_A Phage 434 CRO protein; 75.2 1.7 7.6E-05 23.1 3.0 39 19-57 1-41 (71)
7 2eby_A Putative HTH-type trans 72.4 2.6 0.00011 22.2 3.3 36 27-62 17-54 (113)
8 2jvl_A TRMBF1; coactivator, he 72.0 0.68 3E-05 25.2 0.3 46 18-63 31-80 (107)
9 3kxa_A NGO0477 protein, putati 65.3 2.6 0.00011 22.2 2.1 41 30-70 79-121 (141)
10 1r69_A Repressor protein CI; g 65.1 4.2 0.00019 21.1 3.1 36 22-57 2-39 (69)
11 3clc_A Regulatory protein; pro 62.7 5.9 0.00026 20.3 3.5 52 19-72 9-62 (82)
12 1iuf_A Centromere ABP1 protein 62.0 1.3 6E-05 23.7 0.2 37 21-57 15-61 (144)
13 2a6c_A Helix-turn-helix motif; 60.0 8.2 0.00036 19.5 3.9 47 21-68 18-66 (83)
14 1x57_A Endothelial differentia 58.2 8 0.00036 19.6 3.6 42 21-62 13-56 (91)
15 1utx_A CYLR2; DNA-binding prot 57.1 3.7 0.00016 21.3 1.7 35 30-66 12-46 (66)
16 2wiu_B HTH-type transcriptiona 56.4 11 0.00049 18.8 4.0 45 18-62 9-55 (88)
17 3f52_A CLP gene regulator (CLG 55.3 13 0.00057 18.5 5.9 50 21-70 28-81 (117)
18 2b5a_A C.BCLI; helix-turn-heli 55.0 13 0.00056 18.5 4.1 44 20-63 9-54 (77)
19 3bdn_A Lambda repressor; repre 55.0 5.5 0.00024 20.4 2.3 39 21-59 17-57 (236)
20 3f6w_A XRE-family like protein 54.5 11 0.0005 18.8 3.8 47 21-69 14-62 (83)
21 1b0n_A Protein (SINR protein); 53.9 3.9 0.00017 21.2 1.4 41 30-70 12-55 (111)
22 2ofy_A Putative XRE-family tra 53.2 14 0.00062 18.3 4.2 44 21-65 16-59 (86)
23 3bs3_A Putative DNA-binding pr 51.9 11 0.0005 18.8 3.5 47 25-73 14-62 (76)
24 3eus_A DNA-binding protein; st 51.6 12 0.00053 18.7 3.6 47 21-69 14-62 (86)
25 2kpj_A SOS-response transcript 49.3 16 0.0007 18.0 3.9 41 21-61 9-51 (94)
26 1adr_A P22 C2 repressor; trans 48.8 11 0.00051 18.7 3.1 44 20-63 4-49 (76)
27 3ivp_A Putative transposon-rel 45.1 19 0.00084 17.6 6.1 53 16-70 7-61 (126)
28 2fjr_A Repressor protein CI; g 43.8 18 0.00079 17.7 3.5 41 17-57 5-45 (189)
29 1y9q_A Transcriptional regulat 42.8 7.4 0.00033 19.7 1.4 42 21-62 11-54 (192)
30 2r1j_L Repressor protein C2; p 40.5 11 0.00051 18.7 2.1 41 22-62 6-48 (68)
31 3kz3_A Repressor protein CI; f 39.9 23 0.001 17.1 6.1 38 32-71 25-62 (80)
32 1lmb_3 Protein (lambda repress 39.6 23 0.001 17.1 5.5 40 22-61 18-59 (92)
33 1z05_A Transcriptional regulat 38.0 11 0.00048 18.9 1.6 26 33-58 54-79 (429)
34 2o38_A Hypothetical protein; a 33.5 26 0.0012 16.8 3.0 37 22-58 41-79 (120)
35 2bnm_A Epoxidase; oxidoreducta 33.2 13 0.00058 18.4 1.4 42 21-62 10-54 (198)
36 2ewt_A BLDD, putative DNA-bind 32.0 31 0.0014 16.4 3.6 47 22-70 9-59 (71)
37 2p5t_A Putative transcriptiona 31.4 7.7 0.00034 19.6 0.0 30 31-60 13-42 (158)
38 1y7y_A C.AHDI; helix-turn-heli 30.4 18 0.0008 17.7 1.7 44 22-67 14-59 (74)
39 3mlf_A Transcriptional regulat 30.1 17 0.00076 17.8 1.6 33 30-62 34-66 (111)
40 1z91_A Organic hydroperoxide r 29.0 23 0.001 17.1 2.1 42 10-55 36-77 (147)
41 2ovg_A Phage lambda CRO; trans 27.9 28 0.0012 16.7 2.4 30 25-54 6-35 (66)
42 2h8r_A Hepatocyte nuclear fact 27.5 38 0.0017 16.0 7.0 59 18-78 28-88 (221)
43 2p63_A Cell division control p 27.0 30 0.0013 16.5 2.4 32 15-46 19-50 (56)
44 2pij_A Prophage PFL 6 CRO; tra 25.9 32 0.0014 16.4 2.4 29 25-53 5-34 (67)
45 2ppx_A AGR_C_3184P, uncharacte 25.7 24 0.0011 17.1 1.7 39 25-63 34-74 (99)
46 1ub9_A Hypothetical protein PH 24.2 37 0.0017 16.0 2.4 59 20-78 15-93 (100)
47 2hsg_A Glucose-resistance amyl 23.9 45 0.002 15.6 3.0 32 35-68 5-36 (332)
48 3g7d_A PHPD; non heme Fe(II) d 22.4 48 0.0021 15.4 3.2 37 21-57 230-269 (443)
49 2ef8_A C.ECOT38IS, putative tr 22.4 48 0.0021 15.4 4.4 51 21-71 10-64 (84)
50 3i71_A Ethanolamine utilizatio 22.0 39 0.0018 15.9 2.2 20 14-33 27-46 (68)
51 3fmy_A HTH-type transcriptiona 21.3 26 0.0012 16.8 1.2 50 13-64 7-56 (73)
52 2qjz_A Microtubule-associated 20.0 38 0.0017 16.0 1.8 43 25-78 64-106 (123)
No 1
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=88.31 E-value=0.26 Score=27.49 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHH--HHHHH
Q ss_conf 789999999998--6205444442330278899886131000224888--89999
Q T0643 20 TTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAK--CQEFG 70 (83)
Q Consensus 20 ~tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsaak--CqEFG 70 (83)
...-..|+++++ .|+|+.||+.+-.+++.||.|.|+....+...+. ++.||
T Consensus 7 ~hpG~~Lk~~~~~~glsq~~lA~~lgvs~~~is~ie~G~~~~s~~~~~~la~~lg 61 (94)
T 2ict_A 7 PRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIG 61 (94)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 8988999999999699999999996877588999984643376999999999999
No 2
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102}
Probab=84.86 E-value=0.5 Score=25.95 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=34.5
Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 9999999998--620544444233027889988613100022488
Q T0643 22 VRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAA 64 (83)
Q Consensus 22 VrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsaa 64 (83)
.-..|+++++ .++|+.||+.+-++++.||.|.|++...+...+
T Consensus 19 PGe~Lke~~~~~glsq~eLA~~lGis~~~is~ie~G~~~~s~e~a 63 (104)
T 3cec_A 19 PGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIA 63 (104)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
T ss_conf 509999999987998999999968679999999828867879999
No 3
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=80.40 E-value=1.6 Score=23.27 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCCC-CCCC--HHHHHHHH
Q ss_conf 7899999999986--20544444233027889988613100-0224--88889999
Q T0643 20 TTVRNALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTYY-ANVS--AAKCQEFG 70 (83)
Q Consensus 20 ~tVrnAlk~LLke--mnQStLakecpLsQSmiSsIVNstyy-anvs--aakCqEFG 70 (83)
..+...+++|.++ |+|..||+..-++++.||.|.|+... ..+. ..=|+-||
T Consensus 6 ~~i~~~l~~lr~~~g~s~~~LA~~~Gvs~~tis~ie~g~~~~p~~~~l~~ia~~l~ 61 (78)
T 3b7h_A 6 EFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLG 61 (78)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 99999999999994998999999989299999999869989998999999999979
No 4
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1}
Probab=76.82 E-value=2.1 Score=22.67 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=29.9
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 205444442330278899886131000224888899999
Q T0643 33 MNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGR 71 (83)
Q Consensus 33 mnQStLakecpLsQSmiSsIVNstyyanvsaakCqEFGr 71 (83)
.+|+.||+.|-.+|+.+|-..+. ..|++.+|...-+
T Consensus 12 G~q~~LAr~lGvsq~~Vs~W~~~---~~vp~~~~~~Ie~ 47 (79)
T 3bd1_A 12 GSVSALAASLGVRQSAISNWRAR---GRVPAERCIDIER 47 (79)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHH---TCCCGGGHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC---CCCCHHHHHHHHH
T ss_conf 89999999919989999998816---9899999999999
No 5
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=75.34 E-value=2.6 Score=22.13 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHH--HHHHH
Q ss_conf 3789999999998--6205444442330278899886131000224888--89999
Q T0643 19 HTTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAK--CQEFG 70 (83)
Q Consensus 19 h~tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsaak--CqEFG 70 (83)
...+...++.+-+ .|+|..||+.+-++++.|+.|-|+....++.... |..||
T Consensus 26 ~~~ig~~lk~lR~~~glSq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~ 81 (99)
T 3g5g_A 26 LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLE 81 (99)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 99999999999999099999999998959999999981578999999999999969
No 6
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=75.23 E-value=1.7 Score=23.12 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 37899999999986--2054444423302788998861310
Q T0643 19 HTTVRNALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTY 57 (83)
Q Consensus 19 h~tVrnAlk~LLke--mnQStLakecpLsQSmiSsIVNsty 57 (83)
|.++..-++++.++ |+|..||+.+-++++.||.|.|+.-
T Consensus 1 M~~ig~rlk~~r~~~glsq~~lA~~~Gis~~~is~~e~g~~ 41 (71)
T 1zug_A 1 MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp CCSHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 94899999999998499999999997158999999987999
No 7
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=72.44 E-value=2.6 Score=22.17 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=28.8
Q ss_pred HHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 99998--6205444442330278899886131000224
Q T0643 27 KDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVS 62 (83)
Q Consensus 27 k~LLk--emnQStLakecpLsQSmiSsIVNstyyanvs 62 (83)
.++|+ .|+|+-||+.+-++++.||.|+|+.---+..
T Consensus 17 ~e~l~~~glsq~eLA~~lGvs~~~is~i~~G~~~it~~ 54 (113)
T 2eby_A 17 YEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTE 54 (113)
T ss_dssp HHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHH
T ss_conf 99887679999999999599999999998287789999
No 8
>2jvl_A TRMBF1; coactivator, helix-turn-helix, protein binding, transcription; NMR {Trichoderma reesei}
Probab=72.04 E-value=0.68 Score=25.23 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHH----HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCH
Q ss_conf 53789999999998----62054444423302788998861310002248
Q T0643 18 SHTTVRNALKDLLK----DMNQSSLAKECPLSQSMISSIVNSTYYANVSA 63 (83)
Q Consensus 18 ~h~tVrnAlk~LLk----emnQStLakecpLsQSmiSsIVNstyyanvsa 63 (83)
....+..+++++-+ .|+|..||..+-++++.||.|-|+....++..
T Consensus 31 v~~~ig~~i~~~R~~~~kglTQ~eLA~~~gvs~~~is~~E~G~~~ps~~~ 80 (107)
T 2jvl_A 31 VGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNI 80 (107)
T ss_dssp CCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 57999999999999988699899999998988999999986997899999
No 9
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, structural genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=65.26 E-value=2.6 Score=22.18 Aligned_cols=41 Identities=29% Similarity=0.287 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCH--HHHHHHH
Q ss_conf 9862054444423302788998861310002248--8889999
Q T0643 30 LKDMNQSSLAKECPLSQSMISSIVNSTYYANVSA--AKCQEFG 70 (83)
Q Consensus 30 LkemnQStLakecpLsQSmiSsIVNstyyanvsa--akCqEFG 70 (83)
.+.|.|..||+.|-++++.||.|-|+.....+.. .-|+.||
T Consensus 79 ~~glTq~elA~~~gvs~~~is~iE~G~~~ps~~~l~kia~~l~ 121 (141)
T 3kxa_A 79 KKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALG 121 (141)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 8299899999998979999999987998899999999999939
No 10
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=65.10 E-value=4.2 Score=21.06 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=29.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 9999999998--62054444423302788998861310
Q T0643 22 VRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTY 57 (83)
Q Consensus 22 VrnAlk~LLk--emnQStLakecpLsQSmiSsIVNsty 57 (83)
+-.-++++.+ .|+|..||+.+-+++++|+.+.|+.-
T Consensus 2 ig~rlk~~r~~~~lsq~ela~~~gvs~~ti~~~e~g~~ 39 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCC
T ss_conf 89999999999499999997850989999999987999
No 11
>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP}
Probab=62.70 E-value=5.9 Score=20.26 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 378999999999--862054444423302788998861310002248888999999
Q T0643 19 HTTVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRW 72 (83)
Q Consensus 19 h~tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsaakCqEFGrW 72 (83)
...+-..++++- +.|+|..||+.+-++++.|+.|-|+.. +++...-..+.+.
T Consensus 9 ~~~i~~~ik~~R~~~glsq~~la~~~gis~~~i~~~E~G~~--~~~~~~l~~ia~~ 62 (82)
T 3clc_A 9 LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSR--NLTIKSLELIMKG 62 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCC--CCBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC--CCCHHHHHHHHHH
T ss_conf 99999999999998299999998783998979999986998--9999999999999
No 12
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=62.00 E-value=1.3 Score=23.66 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHC------CHHHHHHHHHHCCCC
Q ss_conf 899999999986----2054444423------302788998861310
Q T0643 21 TVRNALKDLLKD----MNQSSLAKEC------PLSQSMISSIVNSTY 57 (83)
Q Consensus 21 tVrnAlk~LLke----mnQStLakec------pLsQSmiSsIVNsty 57 (83)
.-|.||.+.+.+ +.|+.||+-- ++++|+||.|+++.+
T Consensus 15 ~~k~~l~~~~~~~~~~~~Q~~la~wf~~~f~~~Is~STvs~Ilk~k~ 61 (144)
T 1iuf_A 15 HEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp HHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCHH
T ss_conf 99999999998659987799999999999889976989999996899
No 13
>2a6c_A Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=60.02 E-value=8.2 Score=19.50 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=33.7
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 89999999998--6205444442330278899886131000224888899
Q T0643 21 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQE 68 (83)
Q Consensus 21 tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsaakCqE 68 (83)
..-+.++++.+ .++|..||+.+-++|+.||.|-|+.+- +.|......
T Consensus 18 ~l~~~ir~~R~~~glTq~elA~~~Gis~~~is~iE~G~~~-~~sl~~l~~ 66 (83)
T 2a6c_A 18 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKID-LFSLESLID 66 (83)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGG-GCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCC-CCCHHHHHH
T ss_conf 9999999999996998899999985576355588624212-311589999
No 14
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=58.24 E-value=8 Score=19.56 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=34.2
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999999998--6205444442330278899886131000224
Q T0643 21 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVS 62 (83)
Q Consensus 21 tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvs 62 (83)
+|-..++++.+ .|+|.-||+.+-++++.||.+.|+.-..++.
T Consensus 13 ~iG~~Ir~~R~~~gltq~elA~~~gvs~~~is~~E~g~~~ps~~ 56 (91)
T 1x57_A 13 EVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQ 56 (91)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
T ss_conf 99999999999818869999998099999999997699889999
No 15
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=57.11 E-value=3.7 Score=21.35 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 9862054444423302788998861310002248888
Q T0643 30 LKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKC 66 (83)
Q Consensus 30 LkemnQStLakecpLsQSmiSsIVNstyyanvsaakC 66 (83)
-+.++|..||+.+-++++.+|.+.|+... .+....
T Consensus 12 ~~~ltq~~la~~~gis~~~is~~E~g~~~--ps~~~l 46 (66)
T 1utx_A 12 KKKISQSELAALLEVSRQTINGIEKNKYN--PSLQLA 46 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTTSCC--CCHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHH
T ss_conf 85999999999759699999999879978--999999
No 16
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=56.42 E-value=11 Score=18.82 Aligned_cols=45 Identities=31% Similarity=0.329 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 53789999999998--6205444442330278899886131000224
Q T0643 18 SHTTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVS 62 (83)
Q Consensus 18 ~h~tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvs 62 (83)
+...+-+.++++-+ .++|..||+.+-++++.||.|-|+.-..+++
T Consensus 9 ~~~~lg~~lr~~R~~~glsq~~lA~~~gvs~~~is~~E~g~~~ps~~ 55 (88)
T 2wiu_B 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLT 55 (88)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHH
T ss_conf 99999999999999859999999786399899999998799999999
No 17
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=55.31 E-value=13 Score=18.46 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHH--HHHHHH
Q ss_conf 89999999998--620544444233027889988613100022488--889999
Q T0643 21 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAA--KCQEFG 70 (83)
Q Consensus 21 tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsaa--kCqEFG 70 (83)
.+-..|+++.+ .|+|..||..+-++++.||.|.|+.-..++... -|+.||
T Consensus 28 ~iG~~Lr~~R~~~glsq~~lA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~ 81 (117)
T 3f52_A 28 ALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALG 81 (117)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 999999999999598999999886030778999975303276999999999989
No 18
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=54.97 E-value=13 Score=18.52 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCH
Q ss_conf 789999999998--62054444423302788998861310002248
Q T0643 20 TTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSA 63 (83)
Q Consensus 20 ~tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa 63 (83)
..+...++++.+ .+.|..||+.+-++++.||.+.++.....+..
T Consensus 9 ~~~g~~ir~~R~~~gltq~~lA~~~gvs~~~i~~~E~g~~~p~~~~ 54 (77)
T 2b5a_A 9 RKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLIN 54 (77)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 9999999999998099999999896979999999985999999999
No 19
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=54.97 E-value=5.5 Score=20.43 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=28.7
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCC
Q ss_conf 89999999998--6205444442330278899886131000
Q T0643 21 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYA 59 (83)
Q Consensus 21 tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyya 59 (83)
..|.++.+..+ .|+|..||+.+-++++.||.+.|+....
T Consensus 17 rlk~~~~~~r~~~gltq~~LA~~lGis~~~is~~e~g~~~~ 57 (236)
T 3bdn_A 17 RLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINAL 57 (236)
T ss_dssp HHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 99999999998849999999999797999999997176500
No 20
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=54.51 E-value=11 Score=18.78 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=34.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 8999999999--862054444423302788998861310002248888999
Q T0643 21 TVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEF 69 (83)
Q Consensus 21 tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsaakCqEF 69 (83)
.+...++++- +.|+|..||..+-++++.|+.|.|+... ++......+
T Consensus 14 ~l~~~lk~~R~~~gltq~~lA~~~gis~~~i~~iE~G~~~--~~~~~l~~i 62 (83)
T 3f6w_A 14 ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERR--LDVIEFMDF 62 (83)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSC--CCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHHHHH
T ss_conf 9999999999982999999998853899999999879989--999999999
No 21
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=53.93 E-value=3.9 Score=21.20 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCC-CCCC--CCHHHHHHHH
Q ss_conf 986205444442330278899886131-0002--2488889999
Q T0643 30 LKDMNQSSLAKECPLSQSMISSIVNST-YYAN--VSAAKCQEFG 70 (83)
Q Consensus 30 LkemnQStLakecpLsQSmiSsIVNst-yyan--vsaakCqEFG 70 (83)
-+.|+|..||+.+-+++++||.|.|+. .... .-..=|+.||
T Consensus 12 ~~glsq~eLa~~~gis~~~is~~E~g~~~~ps~~~l~~ia~~l~ 55 (111)
T 1b0n_A 12 EKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLD 55 (111)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 84999999987869899999999879989999999999999989
No 22
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=53.18 E-value=14 Score=18.27 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 899999999986205444442330278899886131000224888
Q T0643 21 TVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAK 65 (83)
Q Consensus 21 tVrnAlk~LLkemnQStLakecpLsQSmiSsIVNstyyanvsaak 65 (83)
.+-..++++-++++|+-||+.+-++++.||.|-|+.. .+.+...
T Consensus 16 ~lG~~ir~~R~~~s~~elA~~~Gvs~~~is~iE~G~~-~~Ps~~~ 59 (86)
T 2ofy_A 16 RLGELLRSARGDMSMVTVAFDAGISVETLRKIETGRI-ATPAFFT 59 (86)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHTTCC-SSCBHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCC-CCCCHHH
T ss_conf 9999999999859999999998959999999986997-8999999
No 23
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343}
Probab=51.87 E-value=11 Score=18.78 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=33.9
Q ss_pred HHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999998--620544444233027889988613100022488889999999
Q T0643 25 ALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWY 73 (83)
Q Consensus 25 Alk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsaakCqEFGrWy 73 (83)
-++++++ .++|..||+..-.+++.||.+.|+... .+......+-..|
T Consensus 14 rik~~r~~~glsq~~lA~~~gvs~~~is~~e~g~~~--p~~~~l~~la~~~ 62 (76)
T 3bs3_A 14 RIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQ--PSLDMLVKVAELL 62 (76)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHHHHHHHHH
T ss_conf 999999993998999999989899999999869989--9999999999998
No 24
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi}
Probab=51.55 E-value=12 Score=18.65 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=33.9
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 8999999999--862054444423302788998861310002248888999
Q T0643 21 TVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEF 69 (83)
Q Consensus 21 tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsaakCqEF 69 (83)
.+...++++- +.+.|..||+.+-++++.||.|-|+... ++......+
T Consensus 14 ~lg~~lk~~R~~~gltq~elA~~lgvs~~~is~~E~G~~~--~~~~~l~~i 62 (86)
T 3eus_A 14 YLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERR--LDVIEFAKW 62 (86)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSC--CBHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHHHHH
T ss_conf 9999999999984999999999979699999999889999--999999999
No 25
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=49.30 E-value=16 Score=17.99 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCCCCCC
Q ss_conf 899999999986--20544444233027889988613100022
Q T0643 21 TVRNALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTYYANV 61 (83)
Q Consensus 21 tVrnAlk~LLke--mnQStLakecpLsQSmiSsIVNstyyanv 61 (83)
....-|++|.++ ++|..||+.+-.+++.|+.+-++.-..++
T Consensus 9 ~f~~~Lk~lr~~~g~tq~elA~~lgvs~~~i~~~E~G~~~ps~ 51 (94)
T 2kpj_A 9 IFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRM 51 (94)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHH
T ss_conf 9999999999990999999999885300567887601000478
No 26
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=48.80 E-value=11 Score=18.73 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCH
Q ss_conf 789999999998--62054444423302788998861310002248
Q T0643 20 TTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSA 63 (83)
Q Consensus 20 ~tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa 63 (83)
..+-..++++.+ .++|..||..+-++++.|+.+.|+....++..
T Consensus 4 ~~ig~~ik~lR~~~gltq~~lA~~~gis~~~i~~~e~g~~~p~~~~ 49 (76)
T 1adr_A 4 QLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGEN 49 (76)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 9999999999999199999999998949999999996998999999
No 27
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=45.14 E-value=19 Score=17.56 Aligned_cols=53 Identities=9% Similarity=0.158 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 025378999999999--8620544444233027889988613100022488889999
Q T0643 16 QWSHTTVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFG 70 (83)
Q Consensus 16 qW~h~tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsaakCqEFG 70 (83)
.-+...+-..++++. +.|+|..||..|-+++++||.+-++.- +.+...-....
T Consensus 7 ~~d~~~iG~rir~lR~~~gltq~elA~~~gvs~~~is~~E~G~~--~ps~~~l~~la 61 (126)
T 3ivp_A 7 KYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQ--HPSLQVLYDLV 61 (126)
T ss_dssp SCCTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCC--CCCHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCC--CCCHHHHHHHH
T ss_conf 03799999999999998399999997742998858999974877--99999999999
No 28
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=43.84 E-value=18 Score=17.72 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 25378999999999862054444423302788998861310
Q T0643 17 WSHTTVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTY 57 (83)
Q Consensus 17 W~h~tVrnAlk~LLkemnQStLakecpLsQSmiSsIVNsty 57 (83)
|+-..+-.-+++.+.--+|..||+.+-++++.||...+...
T Consensus 5 ~~~ee~l~Rl~e~~g~~sq~eLA~~lgvs~~tis~~~~~~~ 45 (189)
T 2fjr_A 5 WSNVDVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGA 45 (189)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 67899999999984987799999997969999999995799
No 29
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=42.82 E-value=7.4 Score=19.74 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=32.0
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 8999999999--86205444442330278899886131000224
Q T0643 21 TVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVS 62 (83)
Q Consensus 21 tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvs 62 (83)
.+-.-++++- +.|+|..||+.+-++.++||.|-|+.-...++
T Consensus 11 ~ig~rir~~R~~~glt~~elA~~~g~s~~~ls~iE~g~~~ps~~ 54 (192)
T 1y9q_A 11 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIA 54 (192)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
T ss_conf 99999999999829999999999894999999997699755536
No 30
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=40.47 E-value=11 Score=18.73 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999999--86205444442330278899886131000224
Q T0643 22 VRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVS 62 (83)
Q Consensus 22 VrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvs 62 (83)
+-..++++. +.++|..+|+.+-++++.||.+.++....++.
T Consensus 6 ig~~ik~~R~~~glsq~ela~~~gi~~~~i~~~E~g~~~p~~~ 48 (68)
T 2r1j_L 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGE 48 (68)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
T ss_conf 9999999999929999999989796999999998799899999
No 31
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=39.94 E-value=23 Score=17.11 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 6205444442330278899886131000224888899999
Q T0643 32 DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGR 71 (83)
Q Consensus 32 emnQStLakecpLsQSmiSsIVNstyyanvsaakCqEFGr 71 (83)
.++|..||+.+-++++.||.+.|+.-- ++......|-+
T Consensus 25 gltq~elA~~lg~s~~~is~~E~G~~~--~s~~~l~~ia~ 62 (80)
T 3kz3_A 25 GLSYESVADKMGMGQSAVAALFNGINA--LNAYNAALLAK 62 (80)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHTTSSC--CCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHHHHHHH
T ss_conf 998999998788049799998889999--99999999999
No 32
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=39.56 E-value=23 Score=17.08 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=30.0
Q ss_pred HHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999986--20544444233027889988613100022
Q T0643 22 VRNALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTYYANV 61 (83)
Q Consensus 22 VrnAlk~LLke--mnQStLakecpLsQSmiSsIVNstyyanv 61 (83)
.+..++.+.++ ++|..||+..-++++.||-+.|+....++
T Consensus 18 l~~~l~~~R~~~gltQ~elA~~lGis~~~is~~E~G~~~~s~ 59 (92)
T 1lmb_3 18 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNA 59 (92)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCH
T ss_conf 999999999992999999998888788579999759999999
No 33
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=38.03 E-value=11 Score=18.89 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=20.4
Q ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCC
Q ss_conf 20544444233027889988613100
Q T0643 33 MNQSSLAKECPLSQSMISSIVNSTYY 58 (83)
Q Consensus 33 mnQStLakecpLsQSmiSsIVNstyy 58 (83)
++.+.||+..-||++.+|.||+.---
T Consensus 54 iSR~eLa~~tgLS~~TVs~iv~~L~~ 79 (429)
T 1z05_A 54 ISRIDLSKESELAPASITKITRELID 79 (429)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 18999998879699999999999998
No 34
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13
Probab=33.51 E-value=26 Score=16.82 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=29.8
Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCC
Q ss_conf 9999999998--620544444233027889988613100
Q T0643 22 VRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYY 58 (83)
Q Consensus 22 VrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyy 58 (83)
.-.++.++.+ ...|...|+.+-.+|+-+|-|.|+.+.
T Consensus 41 L~~~I~~~I~~~~ltQ~eAA~~lGi~QprvS~L~~Gk~~ 79 (120)
T 2o38_A 41 LAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLE 79 (120)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 999999999986985766766628887887699808822
No 35
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A
Probab=33.18 E-value=13 Score=18.42 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=29.5
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCC-CCCCCCC
Q ss_conf 8999999999--8620544444233027889988613-1000224
Q T0643 21 TVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNS-TYYANVS 62 (83)
Q Consensus 21 tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNs-tyyanvs 62 (83)
.+-.-++++- +.|.|..||.-+-+|.||||-|-|+ .-...++
T Consensus 10 ~lg~rir~~R~~~~ltl~~LA~~~GvS~~~lS~iE~G~~~~psl~ 54 (198)
T 2bnm_A 10 GFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLT 54 (198)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 999999999998599999999997989999999984986674377
No 36
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3}
Probab=31.96 E-value=31 Score=16.40 Aligned_cols=47 Identities=6% Similarity=0.167 Sum_probs=32.0
Q ss_pred HHHHHHHHH--HHHHHHHHHHHCC--HHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 999999999--8620544444233--027889988613100022488889999
Q T0643 22 VRNALKDLL--KDMNQSSLAKECP--LSQSMISSIVNSTYYANVSAAKCQEFG 70 (83)
Q Consensus 22 VrnAlk~LL--kemnQStLakecp--LsQSmiSsIVNstyyanvsaakCqEFG 70 (83)
+-+-++++= +.+.|..||+..- ++++.||.|-|+.... +........
T Consensus 9 ig~rlr~~R~~~gltq~~lA~~~g~~is~~~is~~E~G~~~p--s~~~l~~la 59 (71)
T 2ewt_A 9 LGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAV--TVQRLAELA 59 (71)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCC--CHHHHHHHH
T ss_conf 999999999984996999999988972899999998699899--999999999
No 37
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4}
Probab=31.45 E-value=7.7 Score=19.64 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
Q ss_conf 862054444423302788998861310002
Q T0643 31 KDMNQSSLAKECPLSQSMISSIVNSTYYAN 60 (83)
Q Consensus 31 kemnQStLakecpLsQSmiSsIVNstyyan 60 (83)
+.|+|..||+..-+|++.||-+-|+.-..+
T Consensus 13 ~glsq~elA~~~gis~~tis~~E~G~~~ps 42 (158)
T 2p5t_A 13 HDLTQLEFARIVGISRNSLSRYENGTSSVS 42 (158)
T ss_dssp ------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 399999999997979999999987987899
No 38
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=30.45 E-value=18 Score=17.70 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=33.0
Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 9999999998--620544444233027889988613100022488889
Q T0643 22 VRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQ 67 (83)
Q Consensus 22 VrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsaakCq 67 (83)
.-..++++.+ .|+|.-||+.+-++++.|+.|.|+.. +.+.....
T Consensus 14 ig~~lk~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~--~ps~~~l~ 59 (74)
T 1y7y_A 14 FGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQR--NVSLVNIL 59 (74)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCS--CCBHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC--CCCHHHHH
T ss_conf 99999999998099999999898969999999987998--99999999
No 39
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=30.07 E-value=17 Score=17.79 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 986205444442330278899886131000224
Q T0643 30 LKDMNQSSLAKECPLSQSMISSIVNSTYYANVS 62 (83)
Q Consensus 30 LkemnQStLakecpLsQSmiSsIVNstyyanvs 62 (83)
-+.++|..||+.+-++++.||.+-++.-..+++
T Consensus 34 ~~glTq~elA~~lgvs~~tis~~E~G~~~Ps~~ 66 (111)
T 3mlf_A 34 DYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDS 66 (111)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
T ss_conf 829999999999798898999998799999999
No 40
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=28.97 E-value=23 Score=17.08 Aligned_cols=42 Identities=7% Similarity=0.061 Sum_probs=31.8
Q ss_pred HCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 1167000253789999999998620544444233027889988613
Q T0643 10 HMLPPEQWSHTTVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNS 55 (83)
Q Consensus 10 e~lp~eqW~h~tVrnAlk~LLkemnQStLakecpLsQSmiSsIVNs 55 (83)
.+|+..||.- -..+. --..|+++.||+..-++.+.+|.+|+.
T Consensus 36 ~glt~~q~~i---L~~l~-~~~~~t~~eLa~~~~i~~~tisr~i~~ 77 (147)
T 1z91_A 36 LNITYPQYLA---LLLLW-EHETLTVKKMGEQLYLDSGTLTPMLKR 77 (147)
T ss_dssp TCCCHHHHHH---HHHHH-HHSEEEHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHH---HHHHH-CCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 5989999999---99988-589999999999979687668899999
No 41
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexibility; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=27.91 E-value=28 Score=16.66 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf 999999862054444423302788998861
Q T0643 25 ALKDLLKDMNQSSLAKECPLSQSMISSIVN 54 (83)
Q Consensus 25 Alk~LLkemnQStLakecpLsQSmiSsIVN 54 (83)
.|.|..++..|.+.|+..-+.|+-||--+-
T Consensus 6 ~L~~yv~~~GQ~kaA~~lGv~Q~aISKAir 35 (66)
T 2ovg_A 6 TLKDYAMRFGQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp EHHHHHHHHCHHHHHHHHTSCHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 099999996548899982965899999997
No 42
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=27.53 E-value=38 Score=15.97 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 537899999999986--2054444423302788998861310002248888999999999875
Q T0643 18 SHTTVRNALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKK 78 (83)
Q Consensus 18 ~h~tVrnAlk~LLke--mnQStLakecpLsQSmiSsIVNstyyanvsaakCqEFGrWyk~ykk 78 (83)
+...|-..+++.|.+ ..|...+..+-+|||.||.+.++-+- .+..+-..|.+||..-+.
T Consensus 28 d~~~~a~eIk~~L~~~~i~Q~~~~~~tg~SqssiS~~L~~~~~--~~~~~~~~~~~~~~~~~~ 88 (221)
T 2h8r_A 28 DPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTP--MKTQKRAALYTWYVRKQR 88 (221)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTTCCC--CCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHCCCCC--CCCCCHHHCCCHHHCCCC
T ss_conf 8999999999999987995133123346772449899659997--432530110230111244
No 43
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=27.04 E-value=30 Score=16.50 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=26.7
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 00253789999999998620544444233027
Q T0643 15 EQWSHTTVRNALKDLLKDMNQSSLAKECPLSQ 46 (83)
Q Consensus 15 eqW~h~tVrnAlk~LLkemnQStLakecpLsQ 46 (83)
.|-.|+..+|-+-+|+-.||.+.|...|.|-.
T Consensus 19 n~Lp~~~fkNl~Fql~skm~R~eLsDl~TliK 50 (56)
T 2p63_A 19 NNLPHAYFKNLLFRLVANMDRSELSDLGTLIK 50 (56)
T ss_dssp GGSCTTHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02988999999999999844988888999998
No 44
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution; 1.70A {Pseudomonas fluorescens pf-5}
Probab=25.93 E-value=32 Score=16.36 Aligned_cols=29 Identities=38% Similarity=0.461 Sum_probs=25.4
Q ss_pred HHHHHHHHHH-HHHHHHHCCHHHHHHHHHH
Q ss_conf 9999998620-5444442330278899886
Q T0643 25 ALKDLLKDMN-QSSLAKECPLSQSMISSIV 53 (83)
Q Consensus 25 Alk~LLkemn-QStLakecpLsQSmiSsIV 53 (83)
.|.|.+++-. |.+.|+..-..|+-||--+
T Consensus 5 ~L~dyv~~~G~QakaA~~lGV~Q~AISKAi 34 (67)
T 2pij_A 5 PLSKYLEEHGTQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp EHHHHHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCCHHHHHHHCCCCHHHHHHHH
T ss_conf 199999994728889998297489999999
No 45
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=25.72 E-value=24 Score=17.06 Aligned_cols=39 Identities=8% Similarity=0.124 Sum_probs=30.6
Q ss_pred HHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCH
Q ss_conf 9999998--62054444423302788998861310002248
Q T0643 25 ALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSA 63 (83)
Q Consensus 25 Alk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa 63 (83)
.++.+=+ .|+|..||+.+-.++++|+.+-++...-..++
T Consensus 34 ~ir~lR~~~gltQ~~lA~~lgvs~~ti~~~E~G~~~P~~~~ 74 (99)
T 2ppx_A 34 RIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPA 74 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 99999999599999999893998999999988998799999
No 46
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=24.18 E-value=37 Score=16.01 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHCCHHHHHHHHHHCC-----------------CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 789999999998---620544444233027889988613-----------------10002248888999999999875
Q T0643 20 TTVRNALKDLLK---DMNQSSLAKECPLSQSMISSIVNS-----------------TYYANVSAAKCQEFGRWYKHFKK 78 (83)
Q Consensus 20 ~tVrnAlk~LLk---emnQStLakecpLsQSmiSsIVNs-----------------tyyanvsaakCqEFGrWyk~ykk 78 (83)
+.+|-++...|. +|+++.||+.+-++++.+|.+++. ..+..++..--++|.+|....++
T Consensus 15 ~p~r~~Il~~L~~~~~~~~~eLa~~l~is~~~vs~~l~~L~~~GlV~~~~~~~d~r~~~~~LT~~G~~~~~~~~~~l~~ 93 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKA 93 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999726789619999998852687441999986421248888767667542022689999999999999999
No 47
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=23.89 E-value=45 Score=15.59 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=25.8
Q ss_pred HHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 5444442330278899886131000224888899
Q T0643 35 QSSLAKECPLSQSMISSIVNSTYYANVSAAKCQE 68 (83)
Q Consensus 35 QStLakecpLsQSmiSsIVNstyyanvsaakCqE 68 (83)
-..+|+.+-+|.++.|-+.|++ ..||.+..+.
T Consensus 5 ikdIA~~aGVS~~TVSr~Ln~~--~~Vs~~tr~r 36 (332)
T 2hsg_A 5 IYDVAREASVSMATVSRVVNGN--PNVKPSTRKK 36 (332)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTC--TTSCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCC--CCCCHHHHHH
T ss_conf 9999999896999999997795--9999999999
No 48
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A
Probab=22.41 E-value=48 Score=15.43 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHH-CCCC
Q ss_conf 899999999986--205444442330278899886-1310
Q T0643 21 TVRNALKDLLKD--MNQSSLAKECPLSQSMISSIV-NSTY 57 (83)
Q Consensus 21 tVrnAlk~LLke--mnQStLakecpLsQSmiSsIV-Nsty 57 (83)
.-+..|++++++ ++...||+.+-++.||||-|- |+.-
T Consensus 230 ~~~slLk~~rk~RGLTL~eLAkrTGIS~S~LSqIERngks 269 (443)
T 3g7d_A 230 SAGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPAS 269 (443)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCTTS
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 0689999999971888999998869899999999856888
No 49
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=22.40 E-value=48 Score=15.43 Aligned_cols=51 Identities=27% Similarity=0.143 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCH--HHHHHHHH
Q ss_conf 89999999998--62054444423302788998861310002248--88899999
Q T0643 21 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSA--AKCQEFGR 71 (83)
Q Consensus 21 tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsa--akCqEFGr 71 (83)
.+...++++-+ .|.|..||+..-++++.||.|-|+....++.. .-|+-||-
T Consensus 10 ~l~~~ir~~R~~~gltq~~lA~~lgvs~~~is~~E~G~~~p~~~~l~~ia~~lg~ 64 (84)
T 2ef8_A 10 CLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVAS 64 (84)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 9999999999995999999999872699999999879999999999999999689
No 50
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=21.96 E-value=39 Score=15.87 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=17.2
Q ss_pred HHCCCHHHHHHHHHHHHHHH
Q ss_conf 00025378999999999862
Q T0643 14 PEQWSHTTVRNALKDLLKDM 33 (83)
Q Consensus 14 ~eqW~h~tVrnAlk~LLkem 33 (83)
--+|+-+..||||.+|+.+-
T Consensus 27 hf~w~L~~ar~aLEqLfs~G 46 (68)
T 3i71_A 27 HFGWPLEKARNALEQLFSAG 46 (68)
T ss_dssp HHTCCHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHCC
T ss_conf 97786899999999998654
No 51
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=21.27 E-value=26 Score=16.85 Aligned_cols=50 Identities=10% Similarity=-0.024 Sum_probs=34.3
Q ss_pred CHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 7000253789999999998620544444233027889988613100022488
Q T0643 13 PPEQWSHTTVRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAA 64 (83)
Q Consensus 13 p~eqW~h~tVrnAlk~LLkemnQStLakecpLsQSmiSsIVNstyyanvsaa 64 (83)
.++...-..+|..-+ .+.|+|..||..+-.+++.||.+-++...-+.+..
T Consensus 7 ~~~~~~~~~ik~lR~--~~gltQ~elA~~lgvs~~tv~~wE~G~~~P~~~~~ 56 (73)
T 3fmy_A 7 NAETVAPEFIVKVRK--KLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPSTI 56 (73)
T ss_dssp -CCCCCHHHHHHHHH--HTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHHH
T ss_pred CCCCCCHHHHHHHHH--HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHH
T ss_conf 502069999999999--86999999999979899999999949989999999
No 52
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=20.03 E-value=38 Score=15.97 Aligned_cols=43 Identities=26% Similarity=0.535 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999862054444423302788998861310002248888999999999875
Q T0643 25 ALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKK 78 (83)
Q Consensus 25 Alk~LLkemnQStLakecpLsQSmiSsIVNstyyanvsaakCqEFGrWyk~ykk 78 (83)
-+|-|-.-++.-...|..| |..+|.+.|-+|+ ||-+|++.|-.
T Consensus 64 N~klLq~af~kl~I~k~i~-----v~kLikgk~qdNl------eflqWfk~f~d 106 (123)
T 2qjz_A 64 NFKILQAGFKRMGVDKIIP-----VDKLVKGKFQDNF------EFVQWFKKFFD 106 (123)
T ss_dssp HHHHHHHHHHHHTCCCCCC-----HHHHTTCCHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCC-----HHHHHCCCHHHHH------HHHHHHHHHHH
T ss_conf 9999999999839998777-----9998726607699------99999999998
Done!