Query T0643 3NZL, Homo sapiens, 83 residues
Match_columns 83
No_of_seqs 9 out of 11
Neff 1.6
Searched_HMMs 15564
Date Thu Jul 22 14:54:27 2010
Command /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/bin/hhsearch -i /home/syshi_3/CASP9/HHsearch4Targetseq/seq/T0643.hhm -d /home/syshi_2/2008/ferredoxin/manualcheck/update/HHsearch/database/scop70_1.75_hhmdb -o /home/syshi_3/CASP9/HHsearch4Targetseq/scop70search/T0643.hhr
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ic8a2 a.35.1.1 (A:87-180) He 91.2 0.22 1.4E-05 27.0 5.2 68 8-79 2-86 (94)
2 d2icta1 a.35.1.3 (A:8-94) Anti 86.9 0.47 3E-05 25.2 4.4 40 25-64 5-46 (87)
3 d2o38a1 a.35.1.13 (A:28-116) H 79.0 2.5 0.00016 21.4 5.5 49 20-69 10-60 (89)
4 d2croa_ a.35.1.2 (A:) cro 434 78.4 0.81 5.2E-05 24.0 2.8 39 19-57 1-41 (65)
5 d2ofya1 a.35.1.3 (A:3-84) Puta 68.0 2.4 0.00016 21.5 3.2 37 22-58 15-51 (82)
6 d2a6ca1 a.35.1.13 (A:1-69) HTH 66.4 3.5 0.00022 20.6 3.8 37 21-57 6-44 (69)
7 d1b0na2 a.35.1.3 (A:1-68) SinR 64.4 1.6 0.0001 22.4 1.7 46 25-70 5-55 (68)
8 d2r1jl1 a.35.1.2 (L:3-68) P22 64.2 4.1 0.00026 20.2 3.8 42 22-63 4-47 (66)
9 d1utxa_ a.35.1.3 (A:) Putative 59.7 2.2 0.00014 21.7 1.7 36 30-67 12-47 (66)
10 d2b5aa1 a.35.1.3 (A:1-77) Regu 58.4 6.8 0.00043 19.1 4.0 41 22-62 11-53 (77)
11 d1y9qa1 a.35.1.8 (A:4-82) Prob 56.5 7.6 0.00049 18.8 4.0 43 21-63 8-52 (79)
12 d1y7ya1 a.35.1.3 (A:5-73) Rest 53.3 3.3 0.00021 20.8 1.7 47 21-69 9-57 (69)
13 d1x57a1 a.35.1.12 (A:8-85) End 51.8 3.3 0.00021 20.8 1.5 43 21-63 6-50 (78)
14 d1r69a_ a.35.1.2 (A:) 434 C1 r 45.6 9.6 0.00061 18.3 3.1 36 22-57 2-39 (63)
15 d1d1la_ a.35.1.2 (A:) cro lamb 37.3 9.8 0.00063 18.2 2.1 29 25-53 6-34 (61)
16 d1hlva1 a.4.1.7 (A:1-66) DNA-b 37.0 17 0.0011 17.0 3.3 34 23-56 14-49 (66)
17 d2ppxa1 a.35.1.3 (A:30-91) Unc 34.1 11 0.00068 18.1 1.9 32 31-62 11-42 (62)
18 d2fbha1 a.4.5.28 (A:8-144) Tra 23.6 16 0.001 17.1 1.3 40 10-55 24-66 (137)
19 d2qjza1 a.40.1.1 (A:13-132) Mi 22.3 22 0.0014 16.4 1.8 42 26-78 63-104 (120)
20 d1lmb3_ a.35.1.2 (3:) lambda C 21.2 35 0.0023 15.3 3.8 37 31-69 24-60 (87)
No 1
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.21 E-value=0.22 Score=27.02 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=50.0
Q ss_pred CHHCCCHHCCCHHHHHHHHHHHH-----------H------HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 10116700025378999999999-----------8------620544444233027889988613100022488889999
Q T0643 8 HSHMLPPEQWSHTTVRNALKDLL-----------K------DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFG 70 (83)
Q Consensus 8 ~le~lp~eqW~h~tVrnAlk~LL-----------k------emnQStLakecpLsQSmiSsIVNstyyanvsaakCqEFG 70 (83)
.||+||||. -.-++.-+-+|| | ...|.+.|...-|+||-||--.|... .++..|-.-|=
T Consensus 2 ~~~~~~~eE--~~~~~~eVE~llr~d~~~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~~g~--~M~~~KR~alY 77 (94)
T d1ic8a2 2 ELENLSPEE--AAHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGT--PMKTQKRAALY 77 (94)
T ss_dssp CCCSCCHHH--HHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBC--CCCHHHHHHHH
T ss_pred CHHHCCCHH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCC--CCCHHHHHHHH
T ss_conf 034358166--76777799999965999999999999998688599999998015999999982799--85179999999
Q ss_pred HHHHHHHHH
Q ss_conf 999998753
Q T0643 71 RWYKHFKKT 79 (83)
Q Consensus 71 rWyk~ykk~ 79 (83)
+||-.-|+.
T Consensus 78 tWylr~kR~ 86 (94)
T d1ic8a2 78 TWYVRKQRE 86 (94)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 2
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=86.86 E-value=0.47 Score=25.25 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=30.9
Q ss_pred HHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 99999986--20544444233027889988613100022488
Q T0643 25 ALKDLLKD--MNQSSLAKECPLSQSMISSIVNSTYYANVSAA 64 (83)
Q Consensus 25 Alk~LLke--mnQStLakecpLsQSmiSsIVNstyyanvsaa 64 (83)
-|++++++ ++|..||+.+-++++.||.|.|+....+...+
T Consensus 5 ~lke~r~~~glsq~~LA~~lGvs~~~is~ie~g~~~~s~~~~ 46 (87)
T d2icta1 5 IIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMA 46 (87)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCHHHH
T ss_conf 999999986999999999972469999999985017989999
No 3
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=78.97 E-value=2.5 Score=21.38 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 789999999998--62054444423302788998861310002248888999
Q T0643 20 TTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEF 69 (83)
Q Consensus 20 ~tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsaakCqEF 69 (83)
..+-+.++++.+ .|+|..+|+.|-++|+.||.|.|+.+ .+++..+...+
T Consensus 10 ~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~G~~-~~~~~~~L~~i 60 (89)
T d2o38a1 10 LRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKL-EGFSVERLMTL 60 (89)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCC-TTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHH
T ss_conf 9999999999999599999999999733708999984997-89868999999
No 4
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=78.44 E-value=0.81 Score=24.00 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 3789999999998--62054444423302788998861310
Q T0643 19 HTTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTY 57 (83)
Q Consensus 19 h~tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNsty 57 (83)
|.++...++++.+ .|+|..||+.+-++++.||.+.|+..
T Consensus 1 M~~i~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~g~~ 41 (65)
T d2croa_ 1 MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVT 41 (65)
T ss_dssp CCSHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 94899999999998499999999997867949998787799
No 5
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=67.95 E-value=2.4 Score=21.45 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
Q ss_conf 9999999998620544444233027889988613100
Q T0643 22 VRNALKDLLKDMNQSSLAKECPLSQSMISSIVNSTYY 58 (83)
Q Consensus 22 VrnAlk~LLkemnQStLakecpLsQSmiSsIVNstyy 58 (83)
+-..++++=++++|+-||+.+-+|++.||.|-|+...
T Consensus 15 lG~~ir~~R~~~t~~eLA~~~Gvs~~~ls~iE~G~~~ 51 (82)
T d2ofya1 15 LGELLRSARGDMSMVTVAFDAGISVETLRKIETGRIA 51 (82)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 9999999998079999998971799999999829867
No 6
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=66.39 E-value=3.5 Score=20.62 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=29.3
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 89999999998--62054444423302788998861310
Q T0643 21 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTY 57 (83)
Q Consensus 21 tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNsty 57 (83)
.....++++.+ .|+|..||+-+-++|+.||.|-|+..
T Consensus 6 ~l~~~i~~~r~~~gltq~elA~~~gv~~~~is~ie~g~~ 44 (69)
T d2a6ca1 6 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKI 44 (69)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 999999999999699999999998747847999976652
No 7
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=64.44 E-value=1.6 Score=22.43 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=32.8
Q ss_pred HHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCC-CCCCCC--HHHHHHHH
Q ss_conf 999999--86205444442330278899886131-000224--88889999
Q T0643 25 ALKDLL--KDMNQSSLAKECPLSQSMISSIVNST-YYANVS--AAKCQEFG 70 (83)
Q Consensus 25 Alk~LL--kemnQStLakecpLsQSmiSsIVNst-yyanvs--aakCqEFG 70 (83)
.++++. +.|+|..||+.+-++++.||.|.|+. +..++. ..=|+.||
T Consensus 5 ~ik~~R~~~gltq~~la~~~gis~~~i~~~E~g~~~~ps~~~l~~ia~~l~ 55 (68)
T d1b0na2 5 RIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLD 55 (68)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 999999982999999998979799999999859989999999999999989
No 8
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=64.21 E-value=4.1 Score=20.24 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=32.4
Q ss_pred HHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCH
Q ss_conf 999999999--862054444423302788998861310002248
Q T0643 22 VRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSA 63 (83)
Q Consensus 22 VrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsa 63 (83)
+.+.++++. +.|+|..+|+.+-++++.++.+.|+....++..
T Consensus 4 ig~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g~~~p~~~~ 47 (66)
T d2r1jl1 4 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGEN 47 (66)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 99999999998599999999997989999999986998999999
No 9
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=59.69 E-value=2.2 Score=21.72 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 98620544444233027889988613100022488889
Q T0643 30 LKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQ 67 (83)
Q Consensus 30 LkemnQStLakecpLsQSmiSsIVNstyyanvsaakCq 67 (83)
-+.|+|..||+.+-++++.+|.|.|+... .+.....
T Consensus 12 ~~g~tq~elA~~~gis~~~is~~e~g~~~--p~~~~l~ 47 (66)
T d1utxa_ 12 KKKISQSELAALLEVSRQTINGIEKNKYN--PSLQLAL 47 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTTSCC--CCHHHHH
T ss_pred HCCCCHHHHHHHCCCCHHHHHHHHCCCCC--CCHHHHH
T ss_conf 85999999988635579899999869989--9999999
No 10
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=58.36 E-value=6.8 Score=19.10 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=31.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999998--6205444442330278899886131000224
Q T0643 22 VRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVS 62 (83)
Q Consensus 22 VrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvs 62 (83)
+...++.+.+ .++|..||+.+-++++.|+.|.|+.....+.
T Consensus 11 ~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~g~~~p~~~ 53 (77)
T d2b5aa1 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLI 53 (77)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
T ss_conf 9999999999809999999989797999999998699899999
No 11
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=56.45 E-value=7.6 Score=18.83 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=32.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCH
Q ss_conf 8999999999--862054444423302788998861310002248
Q T0643 21 TVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSA 63 (83)
Q Consensus 21 tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsa 63 (83)
.+-+.|+++. +.|+|..||+.+-++.+.|+.|.|+....++..
T Consensus 8 ~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~~p~~~~ 52 (79)
T d1y9qa1 8 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIAT 52 (79)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 999999999998299999999987711648999986998999999
No 12
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=53.33 E-value=3.3 Score=20.78 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=34.4
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 89999999998--62054444423302788998861310002248888999
Q T0643 21 TVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEF 69 (83)
Q Consensus 21 tVrnAlk~LLk--emnQStLakecpLsQSmiSsIVNstyyanvsaakCqEF 69 (83)
...+.++++-+ .|+|..||+.+-.+++.||.+-++... .+......+
T Consensus 9 ~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~~--p~~~~l~~i 57 (69)
T d1y7ya1 9 KFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRN--VSLVNILKL 57 (69)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSC--CBHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC--CCHHHHHHH
T ss_conf 9999999999983999999986829989899999879999--999999999
No 13
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.80 E-value=3.3 Score=20.77 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCH
Q ss_conf 8999999999--862054444423302788998861310002248
Q T0643 21 TVRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYANVSA 63 (83)
Q Consensus 21 tVrnAlk~LL--kemnQStLakecpLsQSmiSsIVNstyyanvsa 63 (83)
++-..++++- +.|+|..||+.+-++++.||.+-|+....++..
T Consensus 6 ~iG~~I~~~R~~~gltq~~lA~~~gis~~~is~~E~G~~~p~~~~ 50 (78)
T d1x57a1 6 EVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV 50 (78)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHH
T ss_conf 999999999998599726788718878999999980677999999
No 14
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=45.60 E-value=9.6 Score=18.30 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=28.2
Q ss_pred HHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 999999999--862054444423302788998861310
Q T0643 22 VRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTY 57 (83)
Q Consensus 22 VrnAlk~LL--kemnQStLakecpLsQSmiSsIVNsty 57 (83)
+-..++++. +.|+|..||+.+-.+++.||.+-|+..
T Consensus 2 ig~rik~~R~~~g~sq~elA~~~gvs~~~is~~E~g~~ 39 (63)
T d1r69a_ 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKT 39 (63)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 89999999998499699999983739999999878989
No 15
>d1d1la_ a.35.1.2 (A:) cro lambda repressor {Bacteriophage lambda [TaxId: 10710]}
Probab=37.27 E-value=9.8 Score=18.23 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999986205444442330278899886
Q T0643 25 ALKDLLKDMNQSSLAKECPLSQSMISSIV 53 (83)
Q Consensus 25 Alk~LLkemnQStLakecpLsQSmiSsIV 53 (83)
.|.|.+.+..|.+.|+.--+.|+-||--+
T Consensus 6 tL~dyv~~~GQaKaA~~LGv~Q~AIsKAi 34 (61)
T d1d1la_ 6 TLKDYAMRFGQTKTAKDLGVYQSAINKAI 34 (61)
T ss_dssp EHHHHHHHHCHHHHHHHHTCCTHHHHHHH
T ss_pred EHHHHHHHHCHHHHHHHCCCCHHHHHHHH
T ss_conf 19999999775989998296488999999
No 16
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.99 E-value=17 Score=16.95 Aligned_cols=34 Identities=12% Similarity=0.386 Sum_probs=25.8
Q ss_pred HHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 9999999986--205444442330278899886131
Q T0643 23 RNALKDLLKD--MNQSSLAKECPLSQSMISSIVNST 56 (83)
Q Consensus 23 rnAlk~LLke--mnQStLakecpLsQSmiSsIVNst 56 (83)
...+..+-.. |.|+.+|++--+..|.+|+|+.+.
T Consensus 14 ~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKnK 49 (66)
T d1hlva1 14 SRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNK 49 (66)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999980872109999999599764799999879
No 17
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=34.10 E-value=11 Score=18.08 Aligned_cols=32 Identities=3% Similarity=0.052 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 86205444442330278899886131000224
Q T0643 31 KDMNQSSLAKECPLSQSMISSIVNSTYYANVS 62 (83)
Q Consensus 31 kemnQStLakecpLsQSmiSsIVNstyyanvs 62 (83)
..|+|..||+.+-.++++||.+-|+....+..
T Consensus 11 ~gltQ~elA~~lGvs~~tvs~~E~G~~~P~~~ 42 (62)
T d2ppxa1 11 LKLTQEEFSARYHIPLGTLRDWEQGRSEPDQP 42 (62)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH
T ss_conf 69999999999698999999887798899999
No 18
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.59 E-value=16 Score=17.08 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=29.6
Q ss_pred HCCCHHCCCHHHHHHHHHHHH--H-HHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 116700025378999999999--8-620544444233027889988613
Q T0643 10 HMLPPEQWSHTTVRNALKDLL--K-DMNQSSLAKECPLSQSMISSIVNS 55 (83)
Q Consensus 10 e~lp~eqW~h~tVrnAlk~LL--k-emnQStLakecpLsQSmiSsIVNs 55 (83)
..|+..||.. |..|. . .++++.||+...++++.+|.+|+.
T Consensus 24 ~glt~~q~~i------L~~l~~~~~~~t~~~la~~~~~~~~~vs~~v~~ 66 (137)
T d2fbha1 24 LGLSQARWLV------LLHLARHRDSPTQRELAQSVGVEGPTLARLLDG 66 (137)
T ss_dssp GCCTTTHHHH------HHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHH------HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 5979999999------999987699976999999989789899999999
No 19
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.30 E-value=22 Score=16.37 Aligned_cols=42 Identities=26% Similarity=0.550 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999862054444423302788998861310002248888999999999875
Q T0643 26 LKDLLKDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFKK 78 (83)
Q Consensus 26 lk~LLkemnQStLakecpLsQSmiSsIVNstyyanvsaakCqEFGrWyk~ykk 78 (83)
+|-|-.-++.-.+.|..| |..+|.+.|-+|+ ||-+|++.|-.
T Consensus 63 ~klLq~af~kl~I~k~i~-----v~kLikgk~qdnl------eflqWfk~f~d 104 (120)
T d2qjza1 63 FKILQAGFKRMGVDKIIP-----VDKLVKGKFQDNF------EFVQWFKKFFD 104 (120)
T ss_dssp HHHHHHHHHHHTCCCCCC-----HHHHTTCCHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCC-----HHHHHCCCCHHHH------HHHHHHHHHHH
T ss_conf 999999999839998888-----9998625606699------99999999998
No 20
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=21.22 E-value=35 Score=15.29 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 862054444423302788998861310002248888999
Q T0643 31 KDMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEF 69 (83)
Q Consensus 31 kemnQStLakecpLsQSmiSsIVNstyyanvsaakCqEF 69 (83)
+.++|..||+..-.+++.||.|-|+.-. ++...-+.+
T Consensus 24 ~gltq~~lA~~lgis~~~is~~E~g~~~--~s~~~l~~i 60 (87)
T d1lmb3_ 24 LGLSQESVADKMGMGQSGVGALFNGINA--LNAYNAALL 60 (87)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTTSSC--CCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCC--CCHHHHHHH
T ss_conf 3999999998867228889999811478--759999999
Done!