hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 104779986.fa
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Query sequence: gi|104779986|ref|YP_606484.1|
Accession: [none]
Description: hypothetical protein PSEEN0746 [Pseudomonas entomophila L48]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
BNR BNR/Asp-box repeat 92.7 9.9e-27 9
DUF1929 Domain of unknown function (DUF1929) 15.9 6.8e-05 6
PKD PKD domain 11.8 0.0043 2
SBBP Beta-propeller repeat 10.2 0.048 7
I-set Immunoglobulin I-set domain 9.6 0.048 2
He_PIG Putative Ig domain 8.4 0.13 1
A2M_N_2 Alpha-2-macroglobulin family N-termin 7.7 0.15 1
Glug The GLUG motif 7.5 0.21 3
PepSY_TM PepSY-associated TM helix 8.9 0.3 1
FG-GAP FG-GAP repeat 7.6 0.31 3
DUF824 Salmonella repeat of unknown function 7.9 0.38 1
Cohesin Cohesin domain 5.8 0.46 1
Bac_GDH Bacterial NAD-glutamate dehydrogenase 1.9 0.52 1
Chlam_PMP Chlamydia polymorphic membrane protei 8.4 0.54 2
Colicin_Pyocin Colicin immunity protein / pyocin imm 5.3 0.63 1
Pericardin_rpt Pericardin like repeat 4.3 0.82 2
DGOK 2-keto-3-deoxy-galactonokinase 0.9 0.92 1
Fumble Fumble 2.8 1 1
DUF735 Protein of unknown function (DUF735) 3.3 1.1 2
MCE mce related protein 4.4 1.4 2
DUF11 Domain of unknown function DUF11 5.4 1.4 1
DUF1659 Protein of unknown function (DUF1659) 4.6 1.6 1
Ammonium_transp Ammonium Transporter Family 0.8 1.9 1
DUF1321 Protein of unknown function (DUF1321) 1.8 2.2 1
ABC_membrane ABC transporter transmembrane region 2.9 2.5 1
DUF1573 Protein of unknown function (DUF1573) 4.6 2.5 2
DUF1869 Domain of unknown function (DUF1869) 0.5 2.6 1
Terminase_4 Phage terminase, small subunit 3.4 2.9 1
TrbC TrbC/VIRB2 family 4.0 2.9 1
LysM LysM domain 4.2 3.1 1
Tir_receptor_C Translocated intimin receptor (Tir) C 1.5 3.1 1
Sec_GG SecD/SecF GG Motif 3.8 3.3 1
PPC Bacterial pre-peptidase C-terminal do 3.2 3.4 1
DUF1521 Domain of Unknown Function (DUF1521) 0.8 3.5 1
Cna_B Cna protein B-type domain 2.3 3.6 1
FlaA Flagellar filament outer layer protei 1.5 3.7 1
Arg_repressor_C Arginine repressor, C-terminal domain 3.5 3.8 1
NPCBM_assoc NPCBM-associated, NEW3 domain of alph 3.1 3.8 2
Fimbrial_K88 Fimbrial, major and minor subunit 1.6 3.8 1
CopC Copper resistance protein CopC 2.0 3.8 2
CARDB CARDB 3.0 3.9 1
HMG_CoA_synt_N Hydroxymethylglutaryl-coenzyme A synt 0.7 4.6 1
NosD Periplasmic copper-binding protein (N 3.2 4.8 3
Sipho_tail Siphovirus tail component protein -0.9 5.6 1
Phage_rep_O Bacteriophage replication protein O 0.5 5.6 1
SP_C-Propep Surfactant protein C, N terminal prop 1.4 5.6 1
DUF2094 Uncharacterized protein conserved in 1.7 5.7 1
Ribonuclease_3 RNase3 domain 1.9 5.9 1
TraH_2 TraH_2 -0.4 6 1
Stap_Strp_toxin Staphylococcal/Streptococcal toxin, O 2.1 6.5 1
DUF2604 Protein of Unknown function (DUF2604) 1.3 6.6 1
IlvB_leader IlvB leader peptide 2.1 6.8 2
Macro Macro domain 1.8 6.8 1
FKBP_C FKBP-type peptidyl-prolyl cis-trans i 1.8 7.3 1
Scramblase Scramblase -0.3 7.5 1
Y_phosphatase Protein-tyrosine phosphatase 0.7 7.6 1
CHAD CHAD domain 0.9 7.6 1
BPS BPS (Between PH and SH2) 1.9 7.6 1
SAF SAF domain 2.8 7.8 1
Peptidase_C4 Peptidase family C4 0.5 8 1
Bunya_G1 Bunyavirus glycoprotein G1 -3.2 8.1 1
Bac_thur_toxin Bacillus thuringiensis toxin 0.4 8.2 1
DUF1236 Protein of unknown function (DUF1236) 2.0 8.2 1
Phage_HK97_TLTM Tail length tape measure protein -0.6 8.4 1
zf-LITAF-like LITAF-like zinc finger domain 1.7 8.6 1
Pro_3_hydrox_C L-proline 3-hydroxylase, C-terminal 0.8 8.7 1
PngaseF_C Peptide-N-glycosidase F, C terminal -0.2 8.7 1
DUF2491 Protein of unknown function (DUF2491) -0.1 8.9 1
AIRC AIR carboxylase 1.2 9.1 1
Host_attach Protein required for attachment to ho 1.3 9.3 1
Anthrax_toxA Anthrax toxin LF subunit 0.1 9.4 1
PASTA PASTA domain 1.6 9.4 1
Bac_DNA_binding Bacterial DNA-binding protein 1.5 9.6 1
Methyltransf_12 Methyltransferase domain 1.8 9.7 1
Lectin_legB Legume lectin domain -0.3 9.9 1
Peptidase_C1 Papain family cysteine protease -0.5 9.9 1
Ricin_B_lectin Ricin-type beta-trefoil lectin domain -0.2 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF1659 1/1 42 54 .. 35 47 .] 4.6 1.6
DUF1321 1/1 50 74 .. 139 161 .] 1.8 2.2
Cna_B 1/1 86 99 .. 1 14 [. 2.3 3.6
Colicin_Pyocin 1/1 96 103 .. 83 90 .] 5.3 0.63
Terminase_4 1/1 97 120 .. 1 24 [. 3.4 2.9
Bunya_G1 1/1 101 119 .. 1 19 [. -3.2 8.1
Ammonium_transp 1/1 118 127 .. 446 455 .] 0.8 1.9
TraH_2 1/1 146 152 .. 203 209 .] -0.4 6
Methyltransf_12 1/1 147 160 .. 96 109 .] 1.8 9.7
Ricin_B_lectin 1/1 151 176 .. 20 44 .. -0.2 10
DUF2491 1/1 211 225 .. 227 241 .] -0.1 8.9
Chlam_PMP 1/2 237 254 .. 5 19 .] 0.3 88
Macro 1/1 242 259 .. 108 125 .] 1.8 6.8
Stap_Strp_toxin 1/1 248 254 .. 88 94 .] 2.1 6.5
FG-GAP 1/3 298 323 .. 1 31 [. 7.2 0.41
Scramblase 1/1 349 356 .. 253 260 .] -0.3 7.5
Peptidase_C4 1/1 375 391 .. 117 133 .. 0.5 8
Phage_HK97_TLTM 1/1 383 395 .. 1 14 [. -0.6 8.4
Glug 1/3 480 510 .. 1 38 [] 3.4 3.6
Chlam_PMP 2/2 501 517 .. 1 19 [] 8.1 0.64
DUF1521 1/1 505 527 .. 153 175 .] 0.8 3.5
Pericardin_rpt 1/2 572 603 .. 1 34 [] 3.0 2.2
SP_C-Propep 1/1 581 594 .. 1 14 [. 1.4 5.6
zf-LITAF-like 1/1 594 619 .. 1 27 [. 1.7 8.6
ABC_membrane 1/1 635 663 .. 255 286 .] 2.9 2.5
PepSY_TM 1/1 655 684 .. 1 34 [] 8.9 0.3
Peptidase_C1 1/1 658 666 .. 278 286 .] -0.5 9.9
Pro_3_hydrox_C 1/1 675 695 .. 35 55 .. 0.8 8.7
Phage_rep_O 1/1 679 694 .. 1 17 [. 0.5 5.6
Y_phosphatase 1/1 681 696 .. 256 271 .] 0.7 7.6
PngaseF_C 1/1 686 699 .. 1 14 [. -0.2 8.7
PKD 1/2 709 729 .. 71 92 .] 6.4 0.2
HMG_CoA_synt_N 1/1 749 764 .. 159 174 .] 0.7 4.6
Ribonuclease_3 1/1 752 760 .. 92 100 .] 1.9 5.9
Sec_GG 1/1 826 841 .. 19 34 .] 3.8 3.3
I-set 1/2 858 873 .. 81 96 .] 6.9 0.28
PKD 2/2 868 888 .. 71 92 .] 5.5 0.39
DUF11 1/1 871 920 .. 1 50 [. 5.4 1.4
I-set 2/2 896 914 .. 1 19 [. 2.6 4.9
A2M_N_2 1/1 898 918 .. 1 21 [. 7.7 0.15
Cohesin 1/1 898 933 .. 1 38 [. 5.8 0.46
DUF824 1/1 904 918 .. 1 20 [. 7.9 0.38
FKBP_C 1/1 908 921 .. 67 80 .. 1.8 7.3
DUF1573 1/2 910 919 .. 36 45 .] 2.1 13
BNR 1/9 941 952 .. 1 12 [] 11.1 0.05
IlvB_leader 1/2 985 1015 .. 1 32 [] 1.8 8.4
DUF1929 1/6 997 1027 .. 1 30 [. 1.8 2.9
BNR 2/9 1043 1054 .. 1 12 [] 10.3 0.087
NosD 1/3 1047 1068 .. 1 22 [. 2.0 11
FlaA 1/1 1068 1086 .. 1 21 [. 1.5 3.7
SBBP 1/7 1085 1094 .. 30 39 .] 2.4 9.5
DUF1236 1/1 1094 1116 .. 1 24 [. 2.0 8.2
DUF1929 2/6 1099 1129 .. 1 30 [. 3.1 1.1
BPS 1/1 1112 1124 .. 1 14 [. 1.9 7.6
CopC 1/2 1119 1136 .. 48 66 .. 1.0 7.4
BNR 3/9 1145 1156 .. 1 12 [] 10.3 0.087
Bac_DNA_binding 1/1 1153 1169 .. 81 97 .] 1.5 9.6
SBBP 2/7 1187 1196 .. 30 39 .] 3.4 4.6
DUF1929 3/6 1201 1231 .. 1 30 [. 2.0 2.6
BNR 4/9 1247 1258 .. 1 12 [] 10.3 0.087
NosD 2/3 1251 1272 .. 1 22 [. 0.3 31
DUF735 1/2 1267 1277 .. 201 211 .] 1.2 4.2
DUF1929 4/6 1303 1326 .. 1 25 [. 3.2 1
NPCBM_assoc 1/2 1315 1328 .. 1 14 [. 0.1 27
DUF1573 2/2 1318 1327 .. 36 45 .] 2.5 9.9
MCE 1/2 1319 1333 .. 1 15 [. 2.3 5.6
BNR 5/9 1349 1360 .. 1 12 [] 10.2 0.095
He_PIG 1/1 1349 1373 .. 30 61 .] 8.4 0.13
SBBP 3/7 1391 1400 .. 30 39 .] 0.0 47
IlvB_leader 2/2 1393 1423 .. 1 32 [] 0.3 25
BNR 6/9 1451 1462 .. 1 12 [] 10.3 0.087
NosD 3/3 1455 1476 .. 1 22 [. 1.0 20
SBBP 4/7 1495 1503 .. 31 39 .] 0.4 36
DUF1929 5/6 1508 1538 .. 1 30 [. 2.0 2.4
CopC 2/2 1528 1545 .. 48 66 .. 1.0 7.4
BNR 7/9 1554 1565 .. 1 12 [] 9.7 0.13
DUF735 2/2 1574 1584 .. 201 211 .] 2.1 2.4
SBBP 5/7 1596 1605 .. 30 39 .] 2.5 8.9
DUF1929 6/6 1610 1633 .. 1 25 [. 3.8 0.61
CARDB 1/1 1620 1634 .. 61 75 .. 3.0 3.9
NPCBM_assoc 2/2 1622 1635 .. 1 14 [. 3.0 4.2
MCE 2/2 1626 1640 .. 1 15 [. 2.1 6.3
Lectin_legB 1/1 1628 1647 .. 1 22 [. -0.3 9.9
BNR 8/9 1656 1667 .. 1 12 [] 10.3 0.087
Bac_thur_toxin 1/1 1672 1686 .. 220 234 .] 0.4 8.2
DGOK 1/1 1714 1736 .. 279 298 .] 0.9 0.92
SAF 1/1 1715 1729 .. 1 15 [. 2.8 7.8
Bac_GDH 1/1 1739 1758 .. 1545 1564 .] 1.9 0.52
BNR 9/9 1758 1769 .. 1 12 [] 10.2 0.095
SBBP 6/7 1801 1810 .. 30 39 .] 1.4 18
Host_attach 1/1 1834 1844 .. 1 11 [. 1.3 9.3
Fumble 1/1 1851 1862 .. 1 12 [. 2.8 1
FG-GAP 2/3 1877 1892 .. 1 16 [. 0.4 41
LysM 1/1 1879 1885 .. 1 7 [. 4.2 3.1
Anthrax_toxA 1/1 1922 1937 .. 1 16 [. 0.1 9.4
PPC 1/1 1949 1996 .. 36 85 .] 3.2 3.4
Sipho_tail 1/1 1951 1969 .. 1 15 [. -0.9 5.6
DUF2604 1/1 2002 2013 .. 65 76 .] 1.3 6.6
Glug 2/3 2019 2031 .. 1 13 [. 1.8 11
PASTA 1/1 2027 2063 .. 32 73 .] 1.6 9.4
Fimbrial_K88 1/1 2042 2052 .. 263 273 .] 1.6 3.8
FG-GAP 3/3 2099 2113 .. 1 15 [. 0.0 52
Tir_receptor_C 1/1 2160 2172 .. 215 227 .] 1.5 3.1
DUF1869 1/1 2167 2182 .. 1 17 [. 0.5 2.6
Arg_repressor_C 1/1 2174 2190 .. 1 17 [. 3.5 3.8
SBBP 7/7 2230 2245 .. 15 31 .. 0.1 45
Glug 3/3 2239 2249 .. 1 11 [. 2.2 8.1
Pericardin_rpt 2/2 2320 2339 .. 15 34 .] 1.3 8.4
TrbC 1/1 2358 2368 .. 72 82 .] 4.0 2.9
CHAD 1/1 2387 2423 .. 239 275 .] 0.9 7.6
AIRC 1/1 2398 2415 .. 135 152 .] 1.2 9.1
DUF2094 1/1 2403 2428 .. 144 167 .] 1.7 5.7
Alignments of top-scoring domains:
DUF1659: domain 1 of 1, from 42 to 54: score 4.6, E = 1.6
*->dAtdEdLYaVAqA<-*
+At+E ++++A A
gi|1047799 42 SATHEPVHEAAPA 54
DUF1321: domain 1 of 1, from 50 to 74: score 1.8, E = 2.2
*->eaapapaplaaak..gaeVVsLDaF<-*
eaapa+ap++aa ++ eVV++D+
gi|1047799 50 EAAPASAPVTAASgnHHEVVFIDSA 74
Cna_B: domain 1 of 1, from 86 to 99: score 2.3, E = 3.6
CS -TT-EEEEEETTEE
*->LeGAeftLldkdgn<-*
++G+e+ +ld++++
gi|1047799 86 PAGVEVVVLDNGKD 99
Colicin_Pyocin: domain 1 of 1, from 96 to 103: score 5.3, E = 0.63
CS TT---SC-
*->NGkpGFKq<-*
NGk GFKq
gi|1047799 96 NGKDGFKQ 103
Terminase_4: domain 1 of 1, from 97 to 120: score 3.4, E = 2.9
*->AKyeWkrlapeLeelglltrlDrt<-*
+K+ +k++a++L+ + ++t D +
gi|1047799 97 GKDGFKQIADYLNGRSDVTSVDII 120
Bunya_G1: domain 1 of 1, from 101 to 119: score -3.2, E = 8.1
*->YsniAqqLkglskISqlDa<-*
++iA++L g s ++ +D+
gi|1047799 101 FKQIADYLNGRSDVTSVDI 119
Ammonium_transp: domain 1 of 1, from 118 to 127: score 0.8, E = 1.9
CS HHHHHS--SB
*->DvaeHgetaY<-*
D++ Hg+++Y
gi|1047799 118 DIISHGDQGY 127
TraH_2: domain 1 of 1, from 146 to 152: score -0.4, E = 6
*->DLSgIGa<-*
DL +IGa
gi|1047799 146 DLARIGA 152
Methyltransf_12: domain 1 of 1, from 147 to 160: score 1.8, E = 9.7
*->LrnlrrlLkPGGvl<-*
L+++ ++L+PGG +
gi|1047799 147 LARIGASLAPGGDI 160
Ricin_B_lectin: domain 1 of 1, from 151 to 176: score -0.2, E = 10
CS .STSTTTEEEEEEE--SS-GG. GEE
*->ggntadggpvglypChggggnd.QlW<-*
g++ a gg+++ + C++g g+d+Ql+
gi|1047799 151 GASLAPGGDIRFFACNTGAGSDgQLF 176
DUF2491: domain 1 of 1, from 211 to 225: score -0.1, E = 8.9
*->stslGidLeptDfrv<-*
+ + G++++++D+++
gi|1047799 211 VVASGVGVQRGDLSA 225
Chlam_PMP: domain 1 of 2, from 237 to 254: score 0.3, E = 88
*->sgNsa...aggGGAiyas<-*
s+N++ +ag+GG+++a+
gi|1047799 237 SKNASlisAGDGGVTLAE 254
Macro: domain 1 of 1, from 242 to 259: score 1.8, E = 6.8
CS -TTSSTTB-HHHHHHHHH
*->aISTGiyGfPkeeaaeia<-*
+IS+G +G+ + ea ++a
gi|1047799 242 LISAGDGGVTLAEAIQAA 259
Stap_Strp_toxin: domain 1 of 1, from 248 to 254: score 2.1, E = 6.5
CS SEEEEST
*->GGVTlhe<-*
GGVTl+e
gi|1047799 248 GGVTLAE 254
FG-GAP: domain 1 of 3, from 298 to 323: score 7.2, E = 0.41
CS CCSCEEEC -TTSSSSSEEEEEETCCCSCC TS
*->fgssvaag.DlnGDGrpDlvvgaPgadggt.dg<-*
+s++++ +D++GDG+ D++ +++++
gi|1047799 298 VTSNITINgDVDGDGKGDIIF-------SGdAN 323
Scramblase: domain 1 of 1, from 349 to 356: score -0.3, E = 7.5
*->IDFdyFEr<-*
+DF+yF++
gi|1047799 349 LDFRYFSS 356
Peptidase_C4: domain 1 of 1, from 375 to 391: score 0.5, E = 8
*->tnFQeksisstVSEsSv<-*
+nFQe++++ + S++Sv
gi|1047799 375 SNFQENYGTVINSATSV 391
Phage_HK97_TLTM: domain 1 of 1, from 383 to 395: score -0.6, E = 8.4
*->QnALNSaTaVlsll<-*
NSaT+V+s +
gi|1047799 383 -TVINSATSVGSTV 395
Glug: domain 1 of 3, from 480 to 510: score 3.4, E = 3.6
*->gnsavGGLvGgaegggrGeqenpgsienctatgnvtvt<-*
g++ GGL+ ++ g ++ n+ +tgn tv+
gi|1047799 480 GSITSGGLGWASGQAGTV------TVQNSIFTGN-TVN 510
Chlam_PMP: domain 2 of 2, from 501 to 517: score 8.1, E = 0.64
*->ditFsgNsaaggGGAiyas<-*
+++F+gN++ +G+A+ a
gi|1047799 501 NSIFTGNTV--NGAALDAA 517
DUF1521: domain 1 of 1, from 505 to 527: score 0.8, E = 3.5
*->tGhavtqadldltengaiygdgk<-*
tG v+ a ld+ ng++ g +
gi|1047799 505 TGNTVNGAALDAATNGGVGGGYT 527
Pericardin_rpt: domain 1 of 2, from 572 to 603: score 3.0, E = 2.2
*->qPgYGsqpGvGaqtGagqPGYgaqPgiGgqtGaG<-*
g+ G G Ga Y a P++ tG G
gi|1047799 572 --GFDRPRGAGVDIGAYEVLYSAPPVVDLDTGNG 603
SP_C-Propep: domain 1 of 1, from 581 to 594: score 1.4, E = 5.6
*->mDmGsKEvLmEsPP<-*
+D+G+ EvL +PP
gi|1047799 581 VDIGAYEVLYSAPP 594
zf-LITAF-like: domain 1 of 1, from 594 to 619: score 1.7, E = 8.6
*->vkVeqPliieneneVavalrrSPasfr<-*
++V +++ + n ++v + SP+ ++
gi|1047799 594 PVVDLDTG-NGGNDSTVNFTGSPVAIV 619
ABC_membrane: domain 1 of 1, from 635 to 663: score 2.9, E = 2.5
*->GgyLvasvisgglsvgtvfaflslglqlsgpl<-*
G++L ++sg l++g+ +++ls g +++++
gi|1047799 635 GATL---NLSGVLDGGNETLSLSAGQIATAAS 663
PepSY_TM: domain 1 of 1, from 655 to 684: score 8.9, E = 0.3
*->lgdlHrgrfggva.llglllglllllllltGlvlw<-*
g +++ +a++++ ++g ++ +l+l+G++++
gi|1047799 655 AGQIAT-----AAsYGITISGSGTTVLSLSGVATL 684
Peptidase_C1: domain 1 of 1, from 658 to 666: score -0.5, E = 9.9
CS TTSSEEEEE
*->Iaseasypi<-*
Ia+ asy+i
gi|1047799 658 IATAASYGI 666
Pro_3_hydrox_C: domain 1 of 1, from 675 to 695: score 0.8, E = 8.7
CS HHGGCTT--TTTHHHHHHHHT
*->iLglsevIseeNyReIlflLa<-*
+L+ls+v + yR Il++ a
gi|1047799 675 VLSLSGVATLAQYRSILAVVA 695
Phage_rep_O: domain 1 of 1, from 679 to 694: score 0.5, E = 5.6
*->SNtaklanfPrPklevv<-*
S++a+la + r +l+vv
gi|1047799 679 SGVATLAQY-RSILAVV 694
Y_phosphatase: domain 1 of 1, from 681 to 696: score 0.7, E = 7.6
CS S-SHHHHHHHHHHHHH
*->VQteeQYiFlydaile<-*
V t++QY+ + +++++
gi|1047799 681 VATLAQYRSILAVVAY 696
PngaseF_C: domain 1 of 1, from 686 to 699: score -0.2, E = 8.7
*->kYyavvrVlnYdks<-*
+Y + V+ Y +s
gi|1047799 686 QYRSILAVVAYGNS 699
PKD: domain 1 of 2, from 709 to 729: score 6.4, E = 0.2
CS EEEEEEEETTCEEEEEEEEEEE
*->tVtLtvsngvgsasattttvtV<-*
+Vt+ v+++ gs+++t ++v+V
gi|1047799 709 SVTVSVNDDMGSTTRT-ASVVV 729
HMG_CoA_synt_N: domain 1 of 1, from 749 to 764: score 0.7, E = 4.6
*->tGGaGavalliGpnAP<-*
t GaGav+l G+nA
gi|1047799 749 TQGAGAVLLDSGSNAT 764
Ribonuclease_3: domain 1 of 1, from 752 to 760: score 1.9, E = 5.9
CS HHHHHHHCT
*->iGAiyLDgG<-*
+GA++LD+G
gi|1047799 752 AGAVLLDSG 760
Sec_GG: domain 1 of 1, from 826 to 841: score 3.8, E = 3.3
*->kGGtrillkvdksvtq<-*
+GG++++l++++s t+
gi|1047799 826 TGGANLVLTFNSSATA 841
I-set: domain 1 of 2, from 858 to 873: score 6.9, E = 0.28
CS EEETTEEEEEEEEEEE
*->AtNsaGeaeasaeLtV<-*
A Ns G+a+ + ++tV
gi|1047799 858 AANSIGQATRTLSVTV 873
PKD: domain 2 of 2, from 868 to 888: score 5.5, E = 0.39
CS EEEEEEEETTCEEEEEEEEEEE
*->tVtLtvsngvgsasattttvtV<-*
t+++tv++g g +s+ ++v V
gi|1047799 868 TLSVTVNDGDGGTSSA-ASVSV 888
DUF11: domain 1 of 1, from 871 to 920: score 5.4, E = 1.4
*->ttgatddlppnnnanatvtvtpvadlvitktvsnatarpGdtvtYTi
+t++ d a+++v + +++ t t s+++ +G+t t+Ti
gi|1047799 871 VTVNDGDGGTSSAASVSVAIHETVPPTATITLSDSALKVGETATVTI 917
TVt<-*
T++
gi|1047799 918 TFS 920
I-set: domain 2 of 2, from 896 to 914: score 2.6, E = 4.9
CS -EEEE--EEEEEETTCEEE
*->PkFtqkpkdveVqeGesar<-*
P+ t+ ++d ++Ge+a+
gi|1047799 896 PTATITLSDSALKVGETAT 914
A2M_N_2: domain 1 of 1, from 898 to 918: score 7.7, E = 0.15
*->LklsldkkeykvGetakvtvt<-*
++l +++kvGeta+vt+t
gi|1047799 898 ATITLSDSALKVGETATVTIT 918
Cohesin: domain 1 of 1, from 898 to 933: score 5.8, E = 0.46
CS EEEEESEC---TT-EEEEEEEEES-TTT-.EEEEEEEE
*->vtvkigkvsgaaGdtVtVPVtvsnvpkkGnvasadfti<-*
t+++ ++ ++G+t tV++t+s v +G +++ad+t+
gi|1047799 898 ATITLSDSALKVGETATVTITFSEV-VSG-FTNADLTV 933
DUF824: domain 1 of 1, from 904 to 918: score 7.9, E = 0.38
*->DsdkgAAKvKKGEtipltVT<-*
Ds+ K+GEt+++t+T
gi|1047799 904 DSA-----LKVGETATVTIT 918
FKBP_C: domain 1 of 1, from 908 to 921: score 1.8, E = 7.3
CS CTTEEEEEEECGGG
*->kvGEkrkltIPpel<-*
kvGE++++tI++ +
gi|1047799 908 KVGETATVTITFSE 921
DUF1573: domain 1 of 2, from 910 to 919: score 2.1, E = 13
*->GesGeIkvtf<-*
Ge++++++tf
gi|1047799 910 GETATVTITF 919
BNR: domain 1 of 9, from 941 to 952: score 11.1, E = 0.05
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
S DgGkTW++
gi|1047799 941 VSSSDGGKTWTA 952
IlvB_leader: domain 1 of 2, from 985 to 1015: score 1.8, E = 8.4
*->mttstlnakLLntAhvAAvvvvRvvvvvGsAP<-*
tts +n+ + + A +vv vG+
gi|1047799 985 -TTSSANYSIDTVRPTATIVVSDSNLAVGETS 1015
DUF1929: domain 1 of 6, from 997 to 1027: score 1.8, E = 2.9
CS ---EEE.ES-SEEETT-E. EEEEESS--..
*->RPtItstvaPssikYGgsy.ftvtvsvpisv<-*
RPt t +v++s++++G+++ +t+t+s ++++
gi|1047799 997 RPTATIVVSDSNLAVGETSlVTITFSEAVTG 1027
BNR: domain 2 of 9, from 1043 to 1054: score 10.3, E = 0.087
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
S DgG+TW++
gi|1047799 1043 VSSSDGGITWTA 1054
NosD: domain 1 of 3, from 1047 to 1068: score 2.0, E = 11
*->nggntWnttktagtNIvGGpYi<-*
+gg tW t t+ NI++++ +
gi|1047799 1047 DGGITWTATFTPTSNITDATNL 1068
FlaA: domain 1 of 1, from 1068 to 1086: score 1.5, E = 3.7
*->kmglnasttiDyALadnadsg<-*
++l +++++D+ a+na++g
gi|1047799 1068 LITLDNTGVLDL--AGNAGTG 1086
SBBP: domain 1 of 7, from 1085 to 1094: score 2.4, E = 9.5
*->tGstngnnfe<-*
tG+tn+nn+
gi|1047799 1085 TGTTNSNNYA 1094
DUF1236: domain 1 of 1, from 1094 to 1116: score 2.0, E = 8.2
*->YVkeqpvpqdpVvvvgfeivVGap<-*
+++q++ ++ Vv ++ +++VG++
gi|1047799 1094 AIDTQRPTATLVVADN-SLSVGET 1116
DUF1929: domain 2 of 6, from 1099 to 1129: score 3.1, E = 1.1
CS ---EEE.ES-SEEETT-E. EEEEESS--..
*->RPtItstvaPssikYGgsy.ftvtvsvpisv<-*
RPt t +va++s+ +G+++ +t+t+s ++++
gi|1047799 1099 RPTATLVVADNSLSVGETSlVTITFSEAVTG 1129
BPS: domain 1 of 1, from 1112 to 1124: score 1.9, E = 7.6
*->rsvsensLvAmDFs<-*
sv e+sLv + Fs
gi|1047799 1112 -SVGETSLVTITFS 1124
CopC: domain 1 of 2, from 1119 to 1136: score 1.0, E = 7.4
CS EEEEESS---CCC-EEEEE
*->ieLtFsEnletgFsgakvt<-*
+++tFsE++ tgF +a +t
gi|1047799 1119 VTITFSEAV-TGFTNADLT 1136
BNR: domain 3 of 9, from 1145 to 1156: score 10.3, E = 0.087
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
S DgG+TW++
gi|1047799 1145 VSSSDGGITWTA 1156
Bac_DNA_binding: domain 1 of 1, from 1153 to 1169: score 1.5, E = 9.6
CS EEEEEEEE-HHHHHHHC
*->kkVpkFkpGKaLKdavn<-*
+++ +F+p a+ da n
gi|1047799 1153 TWTATFTPTSAITDATN 1169
SBBP: domain 2 of 7, from 1187 to 1196: score 3.4, E = 4.6
*->tGstngnnfe<-*
tGstn+nn+
gi|1047799 1187 TGSTNSNNYA 1196
DUF1929: domain 3 of 6, from 1201 to 1231: score 2.0, E = 2.6
CS ---EEE.ES-SEEETT-E. EEEEESS--..
*->RPtItstvaPssikYGgsy.ftvtvsvpisv<-*
RPt t +va+s++k G+++ +tvt+s ++s+
gi|1047799 1201 RPTATLVVADSNLKIGETSlVTVTFSEAVSG 1231
BNR: domain 4 of 9, from 1247 to 1258: score 10.3, E = 0.087
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
S DgG+TW++
gi|1047799 1247 VSSSDGGITWTA 1258
NosD: domain 2 of 3, from 1251 to 1272: score 0.3, E = 31
*->nggntWnttktagtNIvGGpYi<-*
+gg tW t t+ NI++++ +
gi|1047799 1251 DGGITWTATFTPTSNITDTTNV 1272
DUF735: domain 1 of 2, from 1267 to 1277: score 1.2, E = 4.2
*->TdtkkiiTadn<-*
Tdt ++iT dn
gi|1047799 1267 TDTTNVITLDN 1277
DUF1929: domain 4 of 6, from 1303 to 1326: score 3.2, E = 1
CS ---EEE.ES-SEEETT-E.EEEEES
*->RPtItstvaPssikYGgsyftvtvs<-*
RPt t + a++++++G++ tvt +
gi|1047799 1303 RPTATIVLADANLTVGET-TTVTIT 1326
NPCBM_assoc: domain 1 of 2, from 1315 to 1328: score 0.1, E = 27
*->vvaGrtvtvtatft<-*
++ G+t+tvt tf+
gi|1047799 1315 LTVGETTTVTITFS 1328
DUF1573: domain 2 of 2, from 1318 to 1327: score 2.5, E = 9.9
*->GesGeIkvtf<-*
Ge++++++tf
gi|1047799 1318 GETTTVTITF 1327
MCE: domain 1 of 2, from 1319 to 1333: score 2.3, E = 5.6
*->rgytvtayFddalgG<-*
+ tvt++F++a++G
gi|1047799 1319 ETTTVTITFSEAVSG 1333
BNR: domain 5 of 9, from 1349 to 1360: score 10.2, E = 0.095
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
S DgG+TW++
gi|1047799 1349 LSSSDGGITWTA 1360
He_PIG: domain 1 of 1, from 1349 to 1373: score 8.4, E = 0.13
*->LdsstGritGtPtptvqpGsytftvtatdgsg<-*
L+ss+G it+t ++t t+ ++d+ +
gi|1047799 1349 LSSSDGGITWT-------ATFTPTINVQDATN 1373
SBBP: domain 3 of 7, from 1391 to 1400: score 0.0, E = 47
*->tGstngnnfe<-*
+G+tn+ nf
gi|1047799 1391 AGTTNSANFT 1400
IlvB_leader: domain 2 of 2, from 1393 to 1423: score 0.3, E = 25
*->mttstlnakLLntAhvAAvvvvRvvvvvGsAP<-*
tt +n+ + + A vvv vG+
gi|1047799 1393 -TTNSANFTVNTLQPTATVVVSNPALRVGDTS 1423
BNR: domain 6 of 9, from 1451 to 1462: score 10.3, E = 0.087
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
S DgG+TW++
gi|1047799 1451 VSSSDGGITWTA 1462
NosD: domain 3 of 3, from 1455 to 1476: score 1.0, E = 20
*->nggntWnttktagtNIvGGpYi<-*
+gg tW t t+ NI++++ +
gi|1047799 1455 DGGITWTATFTPTNNITDATNL 1476
SBBP: domain 4 of 7, from 1495 to 1503: score 0.4, E = 36
*->Gstngnnfe<-*
Gst++nn+
gi|1047799 1495 GSTDSNNYA 1503
DUF1929: domain 5 of 6, from 1508 to 1538: score 2.0, E = 2.4
CS ---EEE.ES-SEEETT-E. EEEEESS--..
*->RPtItstvaPssikYGgsy.ftvtvsvpisv<-*
RPt t +va+s+++ G+++ +t+t+s ++++
gi|1047799 1508 RPTATLVVADSNLAIGQTSlVTITFSEAVTG 1538
CopC: domain 2 of 2, from 1528 to 1545: score 1.0, E = 7.4
CS EEEEESS---CCC-EEEEE
*->ieLtFsEnletgFsgakvt<-*
+++tFsE++ tgF +a +t
gi|1047799 1528 VTITFSEAV-TGFTNADLT 1545
BNR: domain 7 of 9, from 1554 to 1565: score 9.7, E = 0.13
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
S DgG TW++
gi|1047799 1554 VSSSDGGVTWTA 1565
DUF735: domain 2 of 2, from 1574 to 1584: score 2.1, E = 2.4
*->TdtkkiiTadn<-*
Tdt ++iT dn
gi|1047799 1574 TDTSNLITLDN 1584
SBBP: domain 5 of 7, from 1596 to 1605: score 2.5, E = 8.9
*->tGstngnnfe<-*
tGst++nn+
gi|1047799 1596 TGSTDSNNYA 1605
DUF1929: domain 6 of 6, from 1610 to 1633: score 3.8, E = 0.61
CS ---EEE.ES-SEEETT-E.EEEEES
*->RPtItstvaPssikYGgsyftvtvs<-*
RPt t + a+ +++ G++ tvt++
gi|1047799 1610 RPTATIVIADPNLTAGET-TTVTFT 1633
CARDB: domain 1 of 1, from 1620 to 1634: score 3.0, E = 3.9
*->psLaaGesttvsfsw<-*
p L aGe+ttv+f++
gi|1047799 1620 PNLTAGETTTVTFTF 1634
NPCBM_assoc: domain 2 of 2, from 1622 to 1635: score 3.0, E = 4.2
*->vvaGrtvtvtatft<-*
++aG+t+tvt tf+
gi|1047799 1622 LTAGETTTVTFTFS 1635
MCE: domain 2 of 2, from 1626 to 1640: score 2.1, E = 6.3
*->rgytvtayFddalgG<-*
+ tvt++F++a++G
gi|1047799 1626 ETTTVTFTFSEAVSG 1640
Lectin_legB: domain 1 of 1, from 1628 to 1647: score -0.3, E = 9.9
CS EEEEEEE SSBSTTC....TTEE
*->etvsFny....ngFtsnqrpslsNLt<-*
+tv F++++ +gF ++ ++Lt
gi|1047799 1628 TTVTFTFseavSGF--TN----ADLT 1647
BNR: domain 8 of 9, from 1656 to 1667: score 10.3, E = 0.087
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
S DgG+TW++
gi|1047799 1656 VSSSDGGITWTA 1667
Bac_thur_toxin: domain 1 of 1, from 1672 to 1686: score 0.4, E = 8.2
*->naPIaDifnvinssl<-*
na ++D++nvi+ ++
gi|1047799 1672 NAGVRDLSNVITLNN 1686
DGOK: domain 1 of 1, from 1714 to 1736: score 0.9, E = 0.92
*->avsAVdGDeAvrAG...LseiAr<-*
+++ V +D+A rAG+++L+ i+
gi|1047799 1714 TATVVVADTALRAGqtsLVTITF 1736
SAF: domain 1 of 1, from 1715 to 1729: score 2.8, E = 7.8
CS S-EEEESS-B-TT-B
*->drVvVAardlpaGev<-*
++VvVA +l+aG++
gi|1047799 1715 ATVVVADTALRAGQT 1729
Bac_GDH: domain 1 of 1, from 1739 to 1758: score 1.9, E = 0.52
*->esgaldlAmLsVAlReLrdL<-*
+ ++ +lA LsVA++ L+ L
gi|1047799 1739 AVSGFTLADLSVANGTLSGL 1758
BNR: domain 9 of 9, from 1758 to 1769: score 10.2, E = 0.095
CS EEESSTTSSEEE
*->yyStDgGkTWsk<-*
S DgG+TW++
gi|1047799 1758 LSSSDGGITWTA 1769
SBBP: domain 6 of 7, from 1801 to 1810: score 1.4, E = 18
*->tGstngnnfe<-*
+Gst++nn+
gi|1047799 1801 VGSTDSNNYA 1810
Host_attach: domain 1 of 1, from 1834 to 1844: score 1.3, E = 9.3
*->tWVlVADGskA<-*
t+V+V+++s A
gi|1047799 1834 TLVFVVNASEA 1844
Fumble: domain 1 of 1, from 1851 to 1862: score 2.8, E = 1
*->shvaiDIGGtLi<-*
+++a+DIGG ++
gi|1047799 1851 PRLALDIGGHTV 1862
FG-GAP: domain 2 of 3, from 1877 to 1892: score 0.4, E = 41
CS CCSCEEEC-TTSSSSS
*->fgssvaagDlnGDGrp<-*
f+++v +gD + DG++
gi|1047799 1877 FQYTVQPGDNDSDGIT 1892
LysM: domain 1 of 1, from 1879 to 1885: score 4.2, E = 3.1
CS EE--TT-
*->YtVkkGD<-*
YtV++GD
gi|1047799 1879 YTVQPGD 1885
Anthrax_toxA: domain 1 of 1, from 1922 to 1937: score 0.1, E = 9.4
*->adaLkdeaaakesGvp<-*
+++L d a ++G++
gi|1047799 1922 HQVLVDTQAPTAVGIV 1937
PPC: domain 1 of 1, from 1949 to 1996: score 3.2, E = 3.4
CS EEEEEECCCS ESSSSTTCE-.....ECCTTEEEEE ECC.-SEEE
*->tlLywlldgd..pslsaydaystTrdvdnggsdelis.ftapeaGtY
++ + ++++++ + + +d + + +g+ + ++++ a+ +G+Y
gi|1047799 1949 VRFT-VTFSErvNGVDLSDFSLV----ASGSASGTLTgLQALGDGVY 1990
CS EEEEEE
yirVyg<-*
++V g
gi|1047799 1991 VVTVGG 1996
Sipho_tail: domain 1 of 1, from 1951 to 1969: score -0.9, E = 5.6
*->asviF....NGvdLSelvd<-*
++v+F+++ NGvdLS++++
gi|1047799 1951 FTVTFservNGVDLSDFSL 1969
DUF2604: domain 1 of 1, from 2002 to 2013: score 1.3, E = 6.6
*->kLFLsLKAGvAG<-*
+L L+LKA + G
gi|1047799 2002 TLGLNLKASATG 2013
Glug: domain 2 of 3, from 2019 to 2031: score 1.8, E = 11
*->gnsavGGLvGgae<-*
gn vGGL G ++
gi|1047799 2019 GNALVGGLTGAVY 2031
PASTA: domain 1 of 1, from 2027 to 2063: score 1.6, E = 9.4
*->tveeisgtdkssdvgtGkVvsQsPpaGtkvpkgskvtLtvsk<-*
t ++ +s+d + +V s+s+p G +++ g+ +t++v++
gi|1047799 2027 TGAV-----YSIDRDAPTVGSVSVPVGVTYNTGDVLTFVVNT 2063
Fimbrial_K88: domain 1 of 1, from 2042 to 2052: score 1.6, E = 3.8
*->sApLnVtVtYq<-*
s++++V VtY+
gi|1047799 2042 SVSVPVGVTYN 2052
FG-GAP: domain 3 of 3, from 2099 to 2113: score 0.0, E = 52
CS CCSCEEEC-TTSSSS
*->fgssvaagDlnGDGr<-*
f++++ agD + DG+
gi|1047799 2099 FQYQIQAGDNDSDGI 2113
Tir_receptor_C: domain 1 of 1, from 2160 to 2172: score 1.5, E = 3.1
*->aNaaptPGpeRFV<-*
aN ptPG++ F
gi|1047799 2160 ANPSPTPGSQSFT 2172
DUF1869: domain 1 of 1, from 2167 to 2182: score 0.5, E = 2.6
*->nnkatyllTVTNNsNGV<-*
+ +++T N NGV
gi|1047799 2167 -GSQSFTVTFSENVNGV 2182
Arg_repressor_C: domain 1 of 1, from 2174 to 2190: score 3.5, E = 3.8
CS HHHHHEEEEEEETTEEE
*->llseavlsvdrnenfiv<-*
++se+v +vd n++++v
gi|1047799 2174 TFSENVNGVDLNDFQLV 2190
SBBP: domain 7 of 7, from 2230 to 2245: score 0.1, E = 45
*->fgngIavDsnGNiYvtG<-*
+g+gI +Ds GN+ v+G
gi|1047799 2230 SGTGI-TDSAGNALVGG 2245
Glug: domain 3 of 3, from 2239 to 2249: score 2.2, E = 8.1
*->gnsavGGLvGg<-*
gn vGG+ G+
gi|1047799 2239 GNALVGGFTGQ 2249
Pericardin_rpt: domain 2 of 2, from 2320 to 2339: score 1.3, E = 8.4
*->GagqPGYgaqPgiGgqtGaG<-*
Ga P Y aq G q G G
gi|1047799 2320 GALAPSYLAQVFAGQQGGSG 2339
TrbC: domain 1 of 1, from 2358 to 2368: score 4.0, E = 2.9
*->iFgAssIvdti<-*
+FgAss+++++
gi|1047799 2358 VFGASSLANLF 2368
CHAD: domain 1 of 1, from 2387 to 2423: score 0.9, E = 7.6
*->ladaargageeaafalgllaareaarrrlaraalall<-*
l++a +g+++++++ +l+a re ++r++++ a+al+
gi|1047799 2387 LSAAGKGLSGAPTLGQQLQAFREGEQRQARQLAQALG 2423
AIRC: domain 1 of 1, from 2398 to 2415: score 1.2, E = 9.1
*->pelaekLeayReeqteeV<-*
p+l ++L+a+Re ++++
gi|1047799 2398 PTLGQQLQAFREGEQRQA 2415
DUF2094: domain 1 of 1, from 2403 to 2428: score 1.7, E = 5.7
*->lldalrea..aepdqLdqaLaalpwP<-*
+l+a+re++++ + qL qaL+ +++P
gi|1047799 2403 QLQAFREGeqRQARQLAQALGQVEVP 2428
//