hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 10504244.fa
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Query sequence: gi|10504244|gb|AAG18011.1|AF217292_1
Accession: [none]
Description: cytotoxin B [Clostridium difficile]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CW_binding_1 Putative cell wall binding repeat 153.2 1.3e-47 16
Gly_transf_sug Glycosyltransferase sugar-binding reg 31.0 1e-08 1
Ham1p_like Ham1 family 9.1 0.026 1
DUF1779 Protein of unknown function (DUF1779) 4.4 0.068 1
Phage_sheath_1 Phage tail sheath protein 2.9 0.44 1
DUF807 Coxiella burnetii protein of unknown 4.2 0.64 1
Clp_N Clp amino terminal domain 6.1 0.67 1
Pox_G5 Poxvirus G5 protein 0.9 0.74 1
UPF0254 Uncharacterised protein family (UPF02 4.1 0.79 1
DUF1874 Domain of unknown function (DUF1874) 4.7 1.1 1
Glyco_transf_64 Glycosyl transferase family 64 domain 3.4 1.1 1
DUF533 Protein of unknown function (DUF533) 3.5 1.2 1
RTC RNA 3'-terminal phosphate cyclase 3.1 1.3 1
RRN3 RNA polymerase I specific transcripti 1.3 1.8 1
Not1 CCR4-Not complex component, Not1 2.3 1.9 1
UbiD 3-octaprenyl-4-hydroxybenzoate carbox 1.4 1.9 1
Caps_synth Capsular polysaccharide synthesis pro 2.6 2.3 1
B5 tRNA synthetase B5 domain 3.2 2.5 1
CheR CheR methyltransferase, SAM binding d 1.7 2.8 1
Oscp1 Organic solute transport protein 1 2.5 2.9 1
Thr_dehydrat_C C-terminal regulatory domain of Threo 3.0 2.9 1
DUF1803 Domain of unknown function (DUF1803) 2.8 3 1
TGT Queuine tRNA-ribosyltransferase 2.1 3 1
Phage_Cox Regulatory phage protein cox 2.7 3.1 1
Matrix Viral matrix protein 1.3 3.1 1
GAL11 Transcription regulatory protein GAL1 1.9 3.2 1
Spc97_Spc98 Spc97 / Spc98 family 0.3 3.2 1
SelB-wing_2 Elongation factor SelB, winged helix 4.3 3.7 1
Aldolase KDPG and KHG aldolase 1.4 4.2 1
DUF1992 Domain of unknown function (DUF1992) 3.5 4.2 1
RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 -0.5 4.3 1
Enterotoxin_a Heat-labile enterotoxin alpha chain 1.0 4.4 1
DUF965 Bacterial protein of unknown function 1.6 4.5 1
Nrf1_DNA-bind NLS-binding and DNA-binding and dimer 0.6 4.6 1
Ins_allergen_rp Insect allergen related repeat 3.2 4.7 1
ecTbetaR2 Transforming growth factor beta recep 2.0 4.7 1
Endonuc-FokI_C Restriction endonuclease FokI, C term 0.4 4.8 1
B3 B3 DNA binding domain 2.0 4.9 1
Pec_lyase_C Pectate lyase 2.4 4.9 1
Peptidase_M28 Peptidase family M28 0.9 4.9 1
Porin_2 Porin subfamily 0.6 4.9 1
DUF1679 Protein of unknown function (DUF1679) 0.8 5.2 1
Slx4 Slx4 endonuclease -0.9 5.5 1
Prenylcys_lyase Prenylcysteine lyase -0.4 5.5 1
DUF1672 Protein of unknown function (DUF1672) 0.1 5.5 1
RNA_pol DNA-dependent RNA polymerase 0.7 5.7 1
Lact_bio_phlase Lacto-N-biose phosphorylase -0.8 5.8 1
Baculo_Y142 Baculovirus Y142 protein -0.8 5.8 1
Peptidase_M9 Collagenase 0.0 5.8 1
Cohesin Cohesin domain 1.8 5.8 1
SEA SEA domain 2.1 5.8 1
DUF2124 Uncharacterized protein conserved in 1.4 5.8 1
DUF2603 Protein of unknown function (DUF2603) 1.0 5.8 1
Mo25 Mo25-like 0.0 5.9 1
Peptidase_C1_2 Peptidase C1-like family -0.8 6.2 1
S4 S4 domain 3.5 6.3 1
DUF270 Protein of unknown function, DUF270 -3.7 6.5 1
LRR_1 Leucine Rich Repeat 3.3 6.9 2
RnaseA Pancreatic ribonuclease 0.5 7 1
Thiol_cytolysin Thiol-activated cytolysin -0.2 7.1 1
DUF2102 Uncharacterized protein conserved in 1.6 7.2 1
Neugrin Neugrin -0.3 7.2 1
PalH PalH/RIM21 -0.3 7.3 1
APG12 Ubiquitin-like autophagy protein Apg1 0.9 7.5 1
ComK ComK protein 0.6 7.6 1
DUF648 Family of unknown function (DUF648) -0.5 7.6 1
MutS_IV MutS family domain IV 2.1 7.8 1
Asn_synthase Asparagine synthase 0.8 7.8 1
Bin3 Bicoid-interacting protein 3 (Bin3) 0.9 7.9 1
Peptidase_U49 Peptidase U49 0.4 7.9 1
Dynamin_M Dynamin central region 0.4 8.3 1
Ssl1 Ssl1-like -2.7 8.3 1
Intron_maturas2 Type II intron maturase 0.8 8.8 1
PDEase_I 3'5'-cyclic nucleotide phosphodiester -0.9 8.9 1
Utp13 Utp13 specific WD40 associated domain 0.6 9 1
DUF1348 Protein of unknown function (DUF1348) 0.5 9 1
Rhabdo_ncap_2 Rhabdovirus nucleoprotein -0.4 9.2 1
FMN_bind_2 Putative FMN-binding domain 0.4 9.3 1
Peptidase_M24 metallopeptidase family M24 0.1 9.3 1
Orbi_VP6 Orbivirus helicase VP6 -1.7 9.3 1
Pox_A14 Poxvirus virion envelope protein A14 1.9 9.4 1
Pox_D2 Pox virus D2 protein -0.4 9.4 1
Cyclin Cyclin -0.1 9.5 1
UPF0560 Uncharacterised protein family UPF056 -2.1 9.5 1
A2M Alpha-2-macroglobulin family 0.6 9.6 1
MED6 MED6 mediator sub complex component 0.6 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RTC 1/1 9 21 .. 221 233 .] 3.1 1.3
SelB-wing_2 1/1 27 35 .. 1 9 [. 4.3 3.7
Thr_dehydrat_C 1/1 33 47 .. 79 93 .] 3.0 2.9
Nrf1_DNA-bind 1/1 53 78 .. 189 214 .] 0.6 4.6
Intron_maturas2 1/1 65 88 .. 92 115 .. 0.8 8.8
UPF0254 1/1 65 80 .. 151 166 .] 4.1 0.79
Ham1p_like 1/1 68 79 .. 192 203 .] 9.1 0.026
Mo25 1/1 76 88 .. 377 389 .] 0.0 5.9
LRR_1 1/2 80 101 .. 1 25 [] 1.9 17
Prenylcys_lyase 1/1 130 142 .. 1 13 [. -0.4 5.5
Peptidase_C1_2 1/1 148 162 .. 1 15 [. -0.8 6.2
CheR 1/1 167 173 .. 1 7 [. 1.7 2.8
DUF965 1/1 199 211 .. 67 79 .] 1.6 4.5
DUF1679 1/1 201 213 .. 414 426 .] 0.8 5.2
SEA 1/1 205 241 .. 86 121 .] 2.1 5.8
MutS_IV 1/1 213 234 .. 1 22 [. 2.1 7.8
Spc97_Spc98 1/1 215 237 .. 635 657 .] 0.3 3.2
Gly_transf_sug 1/1 234 291 .. 1 67 [. 31.0 1e-08
FMN_bind_2 1/1 255 290 .. 145 182 .] 0.4 9.3
Rhabdo_ncap_2 1/1 267 275 .. 351 359 .] -0.4 9.2
Caps_synth 1/1 269 287 .. 124 142 .. 2.6 2.3
Aldolase 1/1 274 295 .. 136 159 .. 1.4 4.2
Baculo_Y142 1/1 325 343 .. 30 48 .. -0.8 5.8
Utp13 1/1 331 347 .. 124 140 .. 0.6 9
Pec_lyase_C 1/1 416 425 .. 241 250 .] 2.4 4.9
DUF2603 1/1 429 437 .. 1 9 [. 1.0 5.8
DUF270 1/1 454 458 .. 1 5 [. -3.7 6.5
Bin3 1/1 485 503 .. 85 104 .. 0.9 7.9
GAL11 1/1 505 531 .. 1 28 [. 1.9 3.2
TGT 1/1 518 529 .. 235 246 .] 2.1 3
Pox_D2 1/1 609 624 .. 142 160 .] -0.4 9.4
Asn_synthase 1/1 636 646 .. 317 327 .] 0.8 7.8
Clp_N 1/1 665 681 .. 37 53 .] 6.1 0.67
Enterotoxin_a 1/1 737 755 .. 247 265 .] 1.0 4.4
PalH 1/1 773 786 .. 417 431 .] -0.3 7.3
ecTbetaR2 1/1 775 790 .. 105 120 .] 2.0 4.7
Pox_A14 1/1 810 817 .. 88 95 .] 1.9 9.4
DUF1992 1/1 835 845 .. 1 11 [. 3.5 4.2
Phage_Cox 1/1 852 870 .. 1 20 [. 2.7 3.1
DUF2102 1/1 856 871 .. 89 104 .] 1.6 7.2
Not1 1/1 874 893 .. 1 20 [. 2.3 1.9
B3 1/1 875 905 .. 74 104 .] 2.0 4.9
Lact_bio_phlase 1/1 878 897 .. 597 624 .. -0.8 5.8
DUF1803 1/1 907 921 .. 121 139 .] 2.8 3
Matrix 1/1 919 935 .. 339 355 .] 1.3 3.1
UPF0560 1/1 984 991 .. 1 8 [. -2.1 9.5
Phage_sheath_1 1/1 993 1015 .. 1 26 [. 2.9 0.44
Cyclin 1/1 1010 1029 .. 1 20 [. -0.1 9.5
Ins_allergen_rp 1/1 1016 1025 .. 1 10 [. 3.2 4.7
DUF533 1/1 1054 1066 .. 196 208 .] 3.5 1.2
Glyco_transf_64 1/1 1125 1151 .. 83 108 .. 3.4 1.1
Peptidase_M28 1/1 1179 1195 .. 206 221 .] 0.9 4.9
UbiD 1/1 1218 1230 .. 436 448 .] 1.4 1.9
Neugrin 1/1 1221 1234 .. 1 14 [. -0.3 7.2
Ssl1 1/1 1229 1243 .. 1 15 [. -2.7 8.3
PDEase_I 1/1 1242 1259 .. 239 257 .] -0.9 8.9
Peptidase_U49 1/1 1253 1269 .. 219 241 .] 0.4 7.9
Thiol_cytolysin 1/1 1277 1287 .. 458 468 .] -0.2 7.1
DUF1779 1/1 1302 1308 .. 205 211 .] 4.4 0.068
S4 1/1 1356 1369 .. 35 48 .] 3.5 6.3
Endonuc-FokI_C 1/1 1375 1392 .. 180 197 .] 0.4 4.8
DUF2124 1/1 1413 1421 .. 149 158 .] 1.4 5.8
LRR_1 2/2 1433 1454 .. 1 25 [] 1.4 24
Cohesin 1/1 1504 1527 .. 139 164 .] 1.8 5.8
Peptidase_M24 1/1 1519 1530 .. 279 290 .] 0.1 9.3
A2M 1/1 1532 1543 .. 90 101 .] 0.6 9.6
RnaseA 1/1 1556 1562 .. 123 129 .] 0.5 7
Porin_2 1/1 1589 1595 .. 1 8 [. 0.6 4.9
DUF807 1/1 1606 1620 .. 1 15 [. 4.2 0.64
RRN3 1/1 1632 1646 .. 655 669 .] 1.3 1.8
ComK 1/1 1643 1667 .. 1 25 [. 0.6 7.6
B5 1/1 1716 1736 .. 1 21 [. 3.2 2.5
Orbi_VP6 1/1 1751 1775 .. 7 31 .. -1.7 9.3
APG12 1/1 1753 1771 .. 1 25 [. 0.9 7.5
DUF1874 1/1 1805 1817 .. 110 122 .] 4.7 1.1
DUF648 1/1 1828 1849 .. 381 402 .] -0.5 7.6
CW_binding_1 1/16 1834 1848 .. 1 15 [. 4.8 2
CW_binding_1 2/16 1855 1869 .. 1 15 [. 11.3 0.018
CW_binding_1 3/16 1882 1895 .. 6 19 .] 8.3 0.16
Dynamin_M 1/1 1931 1945 .. 170 184 .. 0.4 8.3
CW_binding_1 4/16 1947 1966 .. 1 19 [] 2.7 9.5
CW_binding_1 5/16 1968 1986 .. 1 19 [] 20.6 1.9e-05
RNA_pol 1/1 1970 1981 .. 522 533 .] 0.7 5.7
DUF1348 1/1 1974 1995 .. 102 123 .. 0.5 9
CW_binding_1 6/16 1988 2006 .. 1 19 [] 21.3 1.2e-05
CW_binding_1 7/16 2008 2026 .. 1 19 [] 6.7 0.5
CW_binding_1 8/16 2078 2094 .. 1 16 [. 4.4 2.8
CW_binding_1 9/16 2105 2118 .. 6 19 .] 12.4 0.0077
CW_binding_1 10/16 2120 2138 .. 1 19 [] 12.0 0.01
Pox_G5 1/1 2130 2139 .. 548 557 .] 0.9 0.74
Oscp1 1/1 2138 2152 .. 170 184 .] 2.5 2.9
CW_binding_1 11/16 2140 2158 .. 1 19 [] 7.3 0.34
DUF1672 1/1 2143 2171 .. 281 308 .] 0.1 5.5
RNA_pol_Rpb2_6 1/1 2146 2161 .. 145 160 .. -0.5 4.3
Peptidase_M9 1/1 2153 2170 .. 106 123 .. 0.0 5.8
MED6 1/1 2163 2176 .. 87 101 .] 0.6 9.8
CW_binding_1 12/16 2210 2227 .. 1 15 [. 7.9 0.21
Slx4 1/1 2235 2256 .. 894 917 .] -0.9 5.5
CW_binding_1 13/16 2239 2252 .. 6 19 .] 8.7 0.12
CW_binding_1 14/16 2254 2272 .. 1 19 [] 14.3 0.002
CW_binding_1 15/16 2275 2292 .. 2 19 .] 6.2 0.76
CW_binding_1 16/16 2324 2336 .. 1 13 [. 4.4 2.7
Alignments of top-scoring domains:
RTC: domain 1 of 1, from 9 to 21: score 3.1, E = 1.3
CS HHHHSS-EEEEEE
RF xxxxxxxxxxxxx
*->ieqFlgvkFeiee<-*
+e++ +v+F+++e
gi|1050424 9 LEKMANVRFRVQE 21
SelB-wing_2: domain 1 of 1, from 27 to 35: score 4.3, E = 3.7
*->lleaLaayH<-*
+l+aL++yH
gi|1050424 27 ILDALEEYH 35
Thr_dehydrat_C: domain 1 of 1, from 33 to 47: score 3.0, E = 2.9
CS EEECTTT-HHHHHCC
*->dyvdlsdneaakehL<-*
+y+++s n+++ ++L
gi|1050424 33 EYHNMSENTVVEKYL 47
Nrf1_DNA-bind: domain 1 of 1, from 53 to 78: score 0.6, E = 4.6
*->hALrkivinCYKyHGReDLLpaFaee<-*
+ L i YK+ GR+ L +F+e
gi|1050424 53 NSLTDTYIDTYKKSGRNKALKKFKEY 78
Intron_maturas2: domain 1 of 1, from 65 to 88: score 0.8, E = 8.8
*->KlgTvrkvikkfGrdlrveiie.ek<-*
K+ + k++kkf+ +l++ei+e e+
gi|1050424 65 KS-GRNKALKKFKEYLVIEILElEN 88
UPF0254: domain 1 of 1, from 65 to 80: score 4.1, E = 0.79
*->ksGIkraLkllesflk<-*
ksG +aLk ++++l+
gi|1050424 65 KSGRNKALKKFKEYLV 80
Ham1p_like: domain 1 of 1, from 68 to 79: score 9.1, E = 0.026
CS HHHHHHHHHHHH
*->RgkALkklkkwL<-*
R kALkk+k++L
gi|1050424 68 RNKALKKFKEYL 79
Mo25: domain 1 of 1, from 76 to 88: score 0.0, E = 5.9
*->KefiikqIesLpp<-*
Ke+++ +I +L++
gi|1050424 76 KEYLVIEILELEN 88
LRR_1: domain 1 of 2, from 80 to 101: score 1.9, E = 17
CS T-EEEETTSSS.BCHSCHHHHHH HH
*->nLeeLdLsgCNPpsltgslpssl.nl<-*
+e L+L++ + +lt +++++l+
gi|1050424 80 VIEILELEN-S--NLT-PVEKNLhFI 101
Prenylcys_lyase: domain 1 of 1, from 130 to 142: score -0.4, E = 5.5
*->leetdwfiiNvlk<-*
+ +++ f+iN lk
gi|1050424 130 FYDSNAFLINTLK 142
Peptidase_C1_2: domain 1 of 1, from 148 to 162: score -0.8, E = 6.2
CS SSHHHHHCHHHHHHC
*->eLtteklekFsknfn<-*
+ ++++le+F++n+n
gi|1050424 148 SASNDTLESFRENLN 162
CheR: domain 1 of 1, from 167 to 173: score 1.7, E = 2.8
*->NvTrFFR<-*
N+T FFR
gi|1050424 167 NHTAFFR 173
DUF965: domain 1 of 1, from 199 to 211: score 1.6, E = 4.5
*->DEilEELvksYLk<-*
D i+ +vk YL+
gi|1050424 199 DLIIDDIVKTYLS 211
DUF1679: domain 1 of 1, from 201 to 213: score 0.8, E = 5.2
*->LlEDvikvHesnl<-*
+++D++k+++sn
gi|1050424 201 IIDDIVKTYLSNE 213
SEA: domain 1 of 1, from 205 to 241: score 2.1, E = 5.8
*->iFr.ptteesavdkteiseeleaalrsqsgnlkidss<-*
i++++ ++e++ d++e+ + +e++l++ + n + d+
gi|1050424 205 IVKtYLSNEYSKDIDELNAYIEESLNKVTENSGNDVR 241
MutS_IV: domain 1 of 1, from 213 to 234: score 2.1, E = 7.8
*->gfdeeLDelrdlleeleeelae<-*
+++ ++Del +ee+ + + e
gi|1050424 213 EYSKDIDELNAYIEESLNKVTE 234
Spc97_Spc98: domain 1 of 1, from 215 to 237: score 0.3, E = 3.2
*->akdldeliaaHedfLdsilsgcf<-*
+kd+del a+ e+ L+++++++
gi|1050424 215 SKDIDELNAYIEESLNKVTENSG 237
Gly_transf_sug: domain 1 of 1, from 234 to 291: score 31.0, E = 1e-08
*->ydvilvtpdleslfkdtpaypwfqeafssardPGrwpKyynaaasDl
+ ++ +++e+ + ++ + ++qe rw+ + a asD
gi|1050424 234 ENSGNDVRNFEEFKTGEVFNLYEQELVE------RWN--L-AGASDI 271
lRlaiLykYGGiYlDtDvil<-*
lR aiL+ GG+YlD D+ +
gi|1050424 272 LRVAILKNIGGVYLDVDMLP 291
FMN_bind_2: domain 1 of 1, from 255 to 290: score 0.4, E = 9.3
*->hEasrmppqPWkvsdaPedyieamlkaIVGfeIeItrl<-*
+E+ + + W + a++ a lk+I G+ ++++ l
gi|1050424 255 YEQEL--VERWNLAGASDILRVAILKNIGGVYLDVDML 290
Rhabdo_ncap_2: domain 1 of 1, from 267 to 275: score -0.4, E = 9.2
*->GaSDlIReA<-*
GaSD+ R A
gi|1050424 267 GASDILRVA 275
Caps_synth: domain 1 of 1, from 269 to 287: score 2.6, E = 2.3
*->SDlLRveLLnrYGGiWiDa<-*
SD+LRv L++ GG+ +D+
gi|1050424 269 SDILRVAILKNIGGVYLDV 287
Aldolase: domain 1 of 1, from 274 to 295: score 1.4, E = 4.2
CS HHHHHHHTTTTTTEEEEECSS-TT
*->vkalKalaGPFaQvrFcPTGGIsP<-*
v+ lK+++G++ +v P GI+P
gi|1050424 274 VAILKNIGGVYLDVDMLP--GIHP 295
Baculo_Y142: domain 1 of 1, from 325 to 343: score -0.8, E = 5.8
*->kpFIreYlknNfnaldDst<-*
k++I+eY++ +f+ ld+++
gi|1050424 325 KEYIPEYTSKHFDTLDEEV 343
Utp13: domain 1 of 1, from 331 to 347: score 0.6, E = 9
*->YteRHfqRldrlvqksy<-*
Yt++Hf+ ld+ vq+s+
gi|1050424 331 YTSKHFDTLDEEVQSSF 347
Pec_lyase_C: domain 1 of 1, from 416 to 425: score 2.4, E = 4.9
CS -EEEEES-EE
*->gtILSEgNsF<-*
g I+S+gN F
gi|1050424 416 GPIISQGNDF 425
DUF2603: domain 1 of 1, from 429 to 437: score 1.0, E = 5.8
*->idelsesLG<-*
+++++esLG
gi|1050424 429 MNNFGESLG 437
DUF270: domain 1 of 1, from 454 to 458: score -3.7, E = 6.5
*->YLRlG<-*
YLR+G
gi|1050424 454 YLRVG 458
Bin3: domain 1 of 1, from 485 to 503: score 0.9, E = 7.9
*->FeeveillgvpnseskGFAk<-*
F e++i +++++se ++F +
gi|1050424 485 FKEMSIDTSILSSELRNF-E 503
GAL11: domain 1 of 1, from 505 to 531: score 1.9, E = 3.2
*->seaqlllPlteedkerlrqLyeevarnp<-*
+++ + ++ te+ k l q +ee+a+++
gi|1050424 505 PKVNISQA-TEQEKNSLWQFNEERAKIQ 531
TGT: domain 1 of 1, from 518 to 529: score 2.1, E = 3
CS THHHHHHHHHHC
*->gsllefveeflr<-*
+sl++f ee+++
gi|1050424 518 NSLWQFNEERAK 529
Pox_D2: domain 1 of 1, from 609 to 624: score -0.4, E = 9.4
*->FktGkaegsLvkvpYYYLP<-*
F ++ + v YYY P
gi|1050424 609 FQKNIEDSE---VAYYYNP 624
Asn_synthase: domain 1 of 1, from 636 to 646: score 0.8, E = 7.8
CS -S-HHHHT---
*->yLPdeileRpK<-*
++Pd i +RpK
gi|1050424 636 RIPDRISDRPK 646
Clp_N: domain 1 of 1, from 665 to 681: score 6.1, E = 0.67
CS TTS-HHHHHHHHHHHHH
*->aGvdldalreaiekllg<-*
aG+d+d l ++ie ++g
gi|1050424 665 AGLDVDSLSSEIETAIG 681
Enterotoxin_a: domain 1 of 1, from 737 to 755: score 1.0, E = 4.4
CS HHHHGXXXXXHHHHHTTXX
*->llSdyqdefiiyngirdEL<-*
+ S +q e+ i+ +r EL
gi|1050424 737 IVSANQYEVRINSEGRREL 755
PalH: domain 1 of 1, from 773 to 786: score -0.3, E = 7.3
*->InnGdDmlfvdptsn<-*
I+ ++ ++++p++n
gi|1050424 773 ISS-KEYISFNPKEN 786
ecTbetaR2: domain 1 of 1, from 775 to 790: score 2.0, E = 4.7
CS -.--XXXXXXXXXXXX
*->seeyntfspdtnkeVv<-*
s ey f+p +nk++v
gi|1050424 775 SKEYISFNPKENKVIV 790
Pox_A14: domain 1 of 1, from 810 to 817: score 1.9, E = 9.4
*->NSSeIELN<-*
NSS+IEL
gi|1050424 810 NSSDIELE 817
DUF1992: domain 1 of 1, from 835 to 845: score 3.5, E = 4.2
*->eslvEerIreA<-*
+vEerI+eA
gi|1050424 835 TQVVEERIEEA 845
Phage_Cox: domain 1 of 1, from 852 to 870: score 2.7, E = 3.1
*->mqiPYmDaenkviespsDlv<-*
+i Y+ e k+ies sD++
gi|1050424 852 -SINYIKNEFKLIESISDAL 870
DUF2102: domain 1 of 1, from 856 to 871: score 1.6, E = 7.2
*->LEeEvklLpkIsrALe<-*
++ E+kl+++Is AL
gi|1050424 856 IKNEFKLIESISDALC 871
Not1: domain 1 of 1, from 874 to 893: score 2.3, E = 1.9
*->siLsELatirthdpedvles<-*
+++EL + +++ed++e+
gi|1050424 874 KQQNELEDSHFISFEDISET 893
B3: domain 1 of 1, from 875 to 905: score 2.0, E = 4.9
CS HHHT--TT-EEEEEE-SSSEEEEEEE--S--
*->kangLkaGDfvvFelvgnseftvvifrcsgc<-*
+ n L++ f+ Fe +++ ++ i++ +++
gi|1050424 875 QQNELEDSHFISFEDISETDEGFSIRFINKE 905
Lact_bio_phlase: domain 1 of 1, from 878 to 897: score -0.8, E = 5.8
*->diephHFitFedigekeGvLqGFLDaGY<-*
++e++HFi+Fedi+e D G+
gi|1050424 878 ELEDSHFISFEDISET--------DEGF 897
DUF1803: domain 1 of 1, from 907 to 921: score 2.8, E = 3
*->deqiWayvFideesliYqa<-*
+e+i F+++e++i+ +
gi|1050424 907 GESI----FVETEKTIFSE 921
Matrix: domain 1 of 1, from 919 to 935: score 1.3, E = 3.1
*->lrvydDvIidkikidkk<-*
+ +y+++I++ i ++k+
gi|1050424 919 FSEYANHITEEISKIKG 935
UPF0560: domain 1 of 1, from 984 to 991: score -2.1, E = 9.5
*->vtLKVQVs<-*
v KVQV+
gi|1050424 984 VAMKVQVY 991
Phage_sheath_1: domain 1 of 1, from 993 to 1015: score 2.9, E = 0.44
*->ellshGVevrkEindGsRpIetvsTs<-*
+l+s G + i+d++R++e vsT+
gi|1050424 993 QLFSTGLNT---ITDAARVVELVSTA 1015
Cyclin: domain 1 of 1, from 1010 to 1029: score -0.1, E = 9.5
*->dellesisrvlerllalnds<-*
+ ++ ++++++++l++l+++
gi|1050424 1010 ELVSTALDETIDLLPTLSEG 1029
Ins_allergen_rp: domain 1 of 1, from 1016 to 1025: score 3.2, E = 4.7
*->ldDflALlPv<-*
ld++++LlP+
gi|1050424 1016 LDETIDLLPT 1025
DUF533: domain 1 of 1, from 1054 to 1066: score 3.5, E = 1.2
*->dpaLveqlEaqvg<-*
dp L++++Ea +g
gi|1050424 1054 DPLLRQEIEAKIG 1066
Glyco_transf_64: domain 1 of 1, from 1125 to 1151: score 3.4, E = 1.1
*->FlpypeIeTdAVLslDDD.illstdel<-*
F+ + +eT+ V+ l DD++++++d+l
gi|1050424 1125 FKHVSLVETEGVFTLLDDkVMMPQDDL 1151
Peptidase_M28: domain 1 of 1, from 1179 to 1195: score 0.9, E = 4.9
CS TSTT-SCCC S-CCCHH
*->HtpaDtldn.idpdtlq<-*
Ht D++d+ +++++
gi|1050424 1179 HTVTDDIDHfFSAPSIT 1195
UbiD: domain 1 of 1, from 1218 to 1230: score 1.4, E = 1.9
*->rDlvIipnapgds<-*
+Dl+++pnap+
gi|1050424 1218 KDLMVLPNAPNRV 1230
Neugrin: domain 1 of 1, from 1221 to 1234: score -0.3, E = 7.2
*->mEAPGAPPRtLtWE<-*
m P AP R WE
gi|1050424 1221 MVLPNAPNRVFAWE 1234
Ssl1: domain 1 of 1, from 1229 to 1243: score -2.7, E = 8.3
*->kgYtWEggYvdGeRs<-*
+ +WE+g G+Rs
gi|1050424 1229 RVFAWETGWTPGLRS 1243
PDEase_I: domain 1 of 1, from 1242 to 1259: score -0.9, E = 8.9
*->dvvekDdiqplldtiedNr<-*
++ e d+++lld+i dN
gi|1050424 1242 RSLEN-DGTKLLDRIRDNY 1259
Peptidase_U49: domain 1 of 1, from 1253 to 1269: score 0.4, E = 7.9
*->dRIeaniskLqleendeiwlalc<-*
dRI++n e++++w +++
gi|1050424 1253 DRIRDN------YEGEFYWRYFA 1269
Thiol_cytolysin: domain 1 of 1, from 1277 to 1287: score -0.2, E = 7.1
*->TTLYPkvsdtv<-*
TTL P+++dt
gi|1050424 1277 TTLKPRYEDTN 1287
DUF1779: domain 1 of 1, from 1302 to 1308: score 4.4, E = 0.068
*->PIITtEY<-*
PIITtEY
gi|1050424 1302 PIITTEY 1308
S4: domain 1 of 1, from 1356 to 1369: score 3.5, E = 6.3
CS --TTTBEETTTCEE
*->vkdpsyrVkpgDei<-*
v++ s+++k gD i
gi|1050424 1356 VTIESDKIKKGDLI 1369
Endonuc-FokI_C: domain 1 of 1, from 1375 to 1392: score 0.4, E = 4.8
CS S--HHHHHTT-SSSB---
*->klskkEVkkkildyeIsy<-*
+ls +E k ++ eI++
gi|1050424 1375 TLSIEENKIILNSHEINF 1392
DUF2124: domain 1 of 1, from 1413 to 1421: score 1.4, E = 5.8
*->IDadIePVtV<-*
I+a+Ie V++
gi|1050424 1413 INAIIE-VDL 1421
LRR_1: domain 2 of 2, from 1433 to 1454: score 1.4, E = 24
CS T-EEEETTSSS.BCHSCH HHHHH HH
*->nLeeLdLsgCNPpsltgs.lpssl.nl<-*
L+ L L++ N +++ ++++ ++ +
gi|1050424 1433 ELKILMLNS-N--HIQ-QkIDY-IgFN 1454
Cohesin: domain 1 of 1, from 1504 to 1527: score 1.8, E = 5.8
CS EEEEECCCTCE-C-EEEE.E-EEES-
*->sslgafddntlteisvvtatnGsvtV<-*
+ ++ +++n+l++++v+t + v++
gi|1050424 1504 KPSFGYYSNNLKDVKVIT-KDN-VNI 1527
Peptidase_M24: domain 1 of 1, from 1519 to 1530: score 0.1, E = 9.3
CS EECSSCEECSTC
*->vVtedGfenLTf<-*
v+t+d++ +LT
gi|1050424 1519 VITKDNVNILTG 1530
A2M: domain 1 of 1, from 1532 to 1543: score 0.6, E = 9.6
*->YldkcikVrVtL<-*
Yl+++ik+++ L
gi|1050424 1532 YLKDDIKISLSL 1543
RnaseA: domain 1 of 1, from 1556 to 1562: score 0.5, E = 7
CS EEEEEEC
*->VHFDasv<-*
VH+D+s+
gi|1050424 1556 VHLDESG 1562
Porin_2: domain 1 of 1, from 1589 to 1595: score 0.6, E = 4.9
*->MNItKSLL<-*
MNI KS++
gi|1050424 1589 MNI-KSIF 1595
DUF807: domain 1 of 1, from 1606 to 1620: score 4.2, E = 0.64
*->mLaAhLiFsGqipiG<-*
+L A+ i sG ++iG
gi|1050424 1606 ILDANFIISGTTSIG 1620
RRN3: domain 1 of 1, from 1632 to 1646: score 1.3, E = 1.8
*->ispnyiewSevkgdy<-*
i+p++i++ + + y
gi|1050424 1632 IQPYFIKFNTLETNY 1646
ComK: domain 1 of 1, from 1643 to 1667: score 0.6, E = 7.6
*->diskeiYevnkgtmvilPkyDesdq<-*
+ Y+ n m++ P yD +d+
gi|1050424 1643 ETNYTLYVGNRQNMIVEPNYDLDDS 1667
B5: domain 1 of 1, from 1716 to 1736: score 3.2, E = 2.5
CS ---EEE-HHHHHHHHT----H
*->prtitlrlerinrlLGlelsa<-*
p +i l++ +in+ + +++ +
gi|1050424 1716 PEVIVLDANYINEKINVNIND 1736
Orbi_VP6: domain 1 of 1, from 1751 to 1775: score -1.7, E = 9.3
*->VikrsseeLkqRqIqinlvdwfese<-*
++ + see k q++i++v+ f+++
gi|1050424 1751 ILMSTSEENKVSQVKIRFVNVFKDK 1775
APG12: domain 1 of 1, from 1753 to 1771: score 0.9, E = 7.5
CS ----------E......EEEEEEEE
*->asTerpkSdkkeKNiqKvqirLkAi<-*
+sT++++ ++ v ir+ ++
gi|1050424 1753 MSTSEENKVSQ------VKIRFVNV 1771
DUF1874: domain 1 of 1, from 1805 to 1817: score 4.7, E = 1.1
*->YedGkIgyslylv<-*
YedG Igy+l lv
gi|1050424 1805 YEDGLIGYDLGLV 1817
DUF648: domain 1 of 1, from 1828 to 1849: score -0.5, E = 7.6
*->sfqkvGgivliytdslplqkpf<-*
+f ++ +++++ dsl kp+
gi|1050424 1828 NFGMMVSGLIYINDSLYYFKPP 1849
CW_binding_1: domain 1 of 16, from 1834 to 1848: score 4.8, E = 2
CS SEEEEETTEEEEEET
*->ngWikdngnWYYfds<-*
+g i++n++ YYf++
gi|1050424 1834 SGLIYINDSLYYFKP 1848
CW_binding_1: domain 2 of 16, from 1855 to 1869: score 11.3, E = 0.018
CS SEEEEETTEEEEEET
*->ngWikdngnWYYfds<-*
+g++++++++YYf++
gi|1050424 1855 TGFVTVGDDKYYFNP 1869
CW_binding_1: domain 3 of 16, from 1882 to 1895: score 8.3, E = 0.16
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
++++ YYf+++G++
gi|1050424 1882 IDDKNYYFNQSGVL 1895
Dynamin_M: domain 1 of 1, from 1931 to 1945: score 0.4, E = 8.3
CS XXXXXXXXXXXXXXX
*->lirsdIrtaernyrG<-*
+i+++I ++e+nyrG
gi|1050424 1931 IIDENIYYFEDNYRG 1945
CW_binding_1: domain 4 of 16, from 1947 to 1966: score 2.7, E = 9.5
CS SEEEEETTEEEEE ETTSCB
*->ngWikdngnWYYf.dsdGkm<-*
+W++ +g +Yf+ ++Gk+
gi|1050424 1947 VEWKELDGEMHYFsPETGKA 1966
CW_binding_1: domain 5 of 16, from 1968 to 1986: score 20.6, E = 1.9e-05
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g ++++++YYf+sdG+m
gi|1050424 1968 KGLNQIGDDKYYFNSDGVM 1986
RNA_pol: domain 1 of 1, from 1970 to 1981: score 0.7, E = 5.7
CS GGGGGG-TTTBX
*->lkeileSdYffn<-*
l++i +++Y+fn
gi|1050424 1970 LNQIGDDKYYFN 1981
DUF1348: domain 1 of 1, from 1974 to 1995: score 0.5, E = 9
*->GnEnWeFdeeGLmkrReAsind<-*
G +++ F+ +G+m++ + sind
gi|1050424 1974 GDDKYYFNSDGVMQKGFVSIND 1995
CW_binding_1: domain 6 of 16, from 1988 to 2006: score 21.3, E = 1.2e-05
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g++ +n+n++Yfd++G+m
gi|1050424 1988 KGFVSINDNKHYFDDSGVM 2006
CW_binding_1: domain 7 of 16, from 2008 to 2026: score 6.7, E = 0.5
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
g+ +++g+ +Yf ++G+m
gi|1050424 2008 VGYTEIDGKHFYFAENGEM 2026
CW_binding_1: domain 8 of 16, from 2078 to 2094: score 4.4, E = 2.8
CS SEEEEE TTEEEEEETT
*->ngWikd.ngnWYYfdsd<-*
gW+ ++g++YYfd+d
gi|1050424 2078 VGWKDLeDGSKYYFDED 2094
CW_binding_1: domain 9 of 16, from 2105 to 2118: score 12.4, E = 0.0077
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
+n++ YYf++dG m
gi|1050424 2105 INDGQYYFNDDGIM 2118
CW_binding_1: domain 10 of 16, from 2120 to 2138: score 12.0, E = 0.01
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
g++++n++ +Yf ++G +
gi|1050424 2120 VGFVTINDKVFYFSDSGII 2138
Pox_G5: domain 1 of 1, from 2130 to 2139: score 0.9, E = 0.74
*->FYFnksiiIk<-*
FYF++s iI+
gi|1050424 2130 FYFSDSGIIE 2139
Oscp1: domain 1 of 1, from 2138 to 2152: score 2.5, E = 2.9
*->ledgvQnRqdGsFvl<-*
+e+gvQn +d +F++
gi|1050424 2138 IESGVQNIDDNYFYI 2152
CW_binding_1: domain 11 of 16, from 2140 to 2158: score 7.3, E = 0.34
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g +++++n++Y+d++G
gi|1050424 2140 SGVQNIDDNYFYIDDNGIV 2158
DUF1672: domain 1 of 1, from 2143 to 2171: score 0.1, E = 5.5
*->pkintnranysdnepieygVfkh.dgfke<-*
+ i n +++dn ++++gVf+ +dg+k
gi|1050424 2143 QNIDDNYFYIDDNGIVQIGVFDTsDGYKY 2171
RNA_pol_Rpb2_6: domain 1 of 1, from 2146 to 2161: score -0.5, E = 4.3
CS CCCHCCB-TTSBB-TT
RF xxxxxxxxxxxxxxxx
*->eaalrkLDedGIvrvG<-*
++++ ++D++GIv +G
gi|1050424 2146 DDNYFYIDDNGIVQIG 2161
Peptidase_M9: domain 1 of 1, from 2153 to 2170: score 0.0, E = 5.8
*->DgntrveVgvfvseedyk<-*
D n +v+ gvf++++ yk
gi|1050424 2153 DDNGIVQIGVFDTSDGYK 2170
MED6: domain 1 of 1, from 2163 to 2176: score 0.6, E = 9.8
*->fnPsqnGysyPelsn<-*
f++s+ Gy y+ +n
gi|1050424 2163 FDTSD-GYKYFAPAN 2176
CW_binding_1: domain 12 of 16, from 2210 to 2227: score 7.9, E = 0.21
CS SEEEEE T TEEEEEET
*->ngWikd..n.gnWYYfds<-*
+gWi+d +n++++YYfd+
gi|1050424 2210 TGWIYDmeNeSDKYYFDP 2227
Slx4: domain 1 of 1, from 2235 to 2256: score -0.9, E = 5.5
*->fVeLiDDslIreWcDklGIclrnd<-*
++ LiDD I+ + D+ GI ++
gi|1050424 2235 GINLIDD--IKYYFDEKGIMRTGL 2256
CW_binding_1: domain 13 of 16, from 2239 to 2252: score 8.7, E = 0.12
CS ETTEEEEEETTSCB
*->dngnWYYfdsdGkm<-*
+++ +YYfd++G m
gi|1050424 2239 IDDIKYYFDEKGIM 2252
CW_binding_1: domain 14 of 16, from 2254 to 2272: score 14.3, E = 0.002
CS SEEEEETTEEEEEETTSCB
*->ngWikdngnWYYfdsdGkm<-*
+g i +n YYf+++G+m
gi|1050424 2254 TGLISFENNNYYFNENGEM 2272
CW_binding_1: domain 15 of 16, from 2275 to 2292: score 6.2, E = 0.76
CS EEEEETTEEEEEETTSCB
*->gWikdngnWYYfdsdGkm<-*
g+i++ ++ +Yf +dG m
gi|1050424 2275 GYINIEDKMFYFGEDGDM 2292
CW_binding_1: domain 16 of 16, from 2324 to 2336: score 4.4, E = 2.7
CS SEEEEETTEEEEE
*->ngWikdngnWYYf<-*
+gW +++ YYf
gi|1050424 2324 TGWLDLDEKRYYF 2336
//