hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            111221658.fa
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Query sequence: gi|111221658|ref|YP_712452.1|
Accession:      [none]
Description:    hypothetical protein FRAAL2224 [Frankia alni ACN14a]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Barren          Barren protein                           -0.3        2.7   1
Caldesmon       Caldesmon                                -1.3        3.9   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Caldesmon         1/1      33    49 ..   790   806 .]    -1.3      3.9
Barren            1/1      84   106 ..     1    28 [.    -0.3      2.7

Alignments of top-scoring domains:
Caldesmon: domain 1 of 1, from 33 to 49: score -1.3, E = 3.9
                   *->LWEKqsveKpvasssKv<-*
                      LW   s+e+p++s+ +
  gi|1112216    33    LWVTMSIERPATSPEQS    49

Barren: domain 1 of 1, from 84 to 106: score -0.3, E = 2.7
                   *->ltpsekekPasrpakapYqerisaplTP<-*
                      l++ +  +P +r+a+ap      apl+P
  gi|1112216    84    LSDDRPRPPERRTAVAP-----DAPLSP    106

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