hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            111223627.fa
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Query sequence: gi|111223627|ref|YP_714421.1|
Accession:      [none]
Description:    hypothetical protein FRAAL4227 [Frankia alni ACN14a]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Invasin_D3      Invasin, domain 3                         1.3        7.4   1
DUF2203         Uncharacterized conserved protein (DU     0.7        9.1   1
DUF1359         Protein of unknown function (DUF1359)     1.1        9.5   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Invasin_D3        1/1      84    97 ..    61    74 ..     1.3      7.4
DUF2203           1/1     134   140 ..   125   131 .]     0.7      9.1
DUF1359           1/1     139   152 ..    91   104 .]     1.1      9.5

Alignments of top-scoring domains:
Invasin_D3: domain 1 of 1, from 84 to 97: score 1.3, E = 7.4
                CS    SS-EEEEEE-SS-E
                   *->aDsYTAsVVGNsvG<-*
                      +D YTA   GNs+G
  gi|1112236    84    PDFYTADLHGNSAG    97

DUF2203: domain 1 of 1, from 134 to 140: score 0.7, E = 9.1
                   *->aGRKPIe<-*
                      aGR+PI
  gi|1112236   134    AGRRPIA    140

DUF1359: domain 1 of 1, from 139 to 152: score 1.1, E = 9.5
                   *->lisELvkkLGIdvk<-*
                      ++  L+ +LG+ v+
  gi|1112236   139    IAQGLANELGVRVE    152

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