hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 113474293.fa
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Query sequence: gi|113474293|ref|YP_720354.1|
Accession: [none]
Description: hemolysin-type calcium-binding region [Trichodesmium erythraeum IMS101]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 92.3 8.1e-27 6
CHRD CHRD domain 39.7 4.5e-10 2
DUF461 Protein of unknown function (DUF461) 5.4 0.59 1
Photo_RC Photosynthetic reaction centre protei 1.7 2.2 1
DUF1759 Protein of unknown function (DUF1759) 1.8 2.3 1
Corona_NS3b ORF3b coronavirus protein 0.4 2.9 1
Phage_portal_2 Phage portal protein, lambda family 1.5 3 1
DUF1400 Alpha/beta hydrolase of unknown funct 2.1 3.6 1
Clenterotox Clostridium enterotoxin 1.4 3.7 1
DUF1934 Domain of unknown function (DUF1934) 3.0 4.6 1
Fib_alpha Fibrinogen alpha chain -0.2 4.7 1
MIase Muconolactone delta-isomerase 1.9 5.5 1
PepX_N X-Prolyl dipeptidyl aminopeptidase Pe 0.4 5.7 1
Corona_nucleoca Coronavirus nucleocapsid protein 0.2 6.3 1
Peptidase_M6 Immune inhibitor A peptidase M6 -1.2 6.3 1
MIF Macrophage migration inhibitory facto 1.3 6.4 1
Rer1 Rer1 family 0.7 7.9 1
DoxA TQO small subunit DoxA 0.6 8 1
Pepsin-I3 Pepsin inhibitor-3-like repeated doma 1.6 8.2 1
HDC Histidine carboxylase PI chain -1.4 8.8 1
DUF2587 Protein of unknown function (DUF2587) -1.5 9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF1400 1/1 65 78 .. 122 135 .] 2.1 3.6
PepX_N 1/1 204 211 .. 151 158 .] 0.4 5.7
Corona_nucleoca 1/1 314 330 .. 465 481 .] 0.2 6.3
DUF1934 1/1 314 342 .. 6 34 .. 3.0 4.6
Phage_portal_2 1/1 343 362 .. 365 384 .] 1.5 3
MIase 1/1 375 391 .. 1 18 [. 1.9 5.5
MIF 1/1 378 391 .. 1 17 [. 1.3 6.4
Clenterotox 1/1 383 413 .. 168 198 .] 1.4 3.7
CHRD 1/2 430 473 .. 1 48 [. 22.3 2.3e-05
Rer1 1/1 437 461 .. 1 25 [. 0.7 7.9
Corona_NS3b 1/1 469 486 .. 227 244 .] 0.4 2.9
DoxA 1/1 556 581 .. 15 41 .. 0.6 8
Peptidase_M6 1/1 560 575 .. 687 703 .] -1.2 6.3
DUF461 1/1 596 607 .. 100 113 .] 5.4 0.59
Pepsin-I3 1/1 604 631 .. 50 77 .] 1.6 8.2
DUF1759 1/1 606 618 .. 1 13 [. 1.8 2.3
CHRD 2/2 658 684 .. 106 131 .] 17.4 0.00048
HemolysinCabind 1/6 689 706 .. 1 18 [] 10.8 0.043
HDC 1/1 734 762 .. 215 244 .. -1.4 8.8
Fib_alpha 1/1 801 818 .. 480 497 .] -0.2 4.7
HemolysinCabind 2/6 813 830 .. 1 18 [] 17.9 0.00029
HemolysinCabind 3/6 831 848 .. 1 18 [] 20.1 6.3e-05
HemolysinCabind 4/6 849 866 .. 1 18 [] 21.6 2.2e-05
Photo_RC 1/1 865 877 .. 1 13 [. 1.7 2.2
HemolysinCabind 5/6 867 884 .. 1 18 [] 8.9 0.16
HemolysinCabind 6/6 885 902 .. 1 18 [] 13.0 0.0092
DUF2587 1/1 925 940 .. 1 16 [. -1.5 9
Alignments of top-scoring domains:
DUF1400: domain 1 of 1, from 65 to 78: score 2.1, E = 3.6
*->svlqaYPgpslrln<-*
++l +YP+ sl++
gi|1134742 65 ELLSNYPTNSLHIV 78
PepX_N: domain 1 of 1, from 204 to 211: score 0.4, E = 5.7
*->DqLvsrGy<-*
D++vs Gy
gi|1134742 204 DDMVSNGY 211
Corona_nucleoca: domain 1 of 1, from 314 to 330: score 0.2, E = 6.3
*->kalveddtqvEiidEvd<-*
k++ +d +E+ +Ev+
gi|1134742 314 KSVINEDQFRELVNEVT 330
DUF1934: domain 1 of 1, from 314 to 342: score 3.0, E = 4.6
CS EEEEEETTEEEEEEEEEEEEEEEETTEEE
*->kqkikqdgeketiElvteGtlykkgdsyY<-*
k++i++d+ e + +vt+G+ ++kg+ yY
gi|1134742 314 KSVINEDQFRELVNEVTTGEGVVKGEPYY 342
Phage_portal_2: domain 1 of 1, from 343 to 362: score 1.5, E = 3
*->YSsaRqsanEsweyflgrqk<-*
YS +R + w y +++q+
gi|1134742 343 YSEIREAGRDHWHYIMELQE 362
MIase: domain 1 of 1, from 375 to 391: score 1.9, E = 5.5
*->MLFhVrMtVniPddmpad<-*
L V+ ++n+Pd+ p d
gi|1134742 375 -LLEVEVETNVPDSIPSD 391
MIF: domain 1 of 1, from 378 to 391: score 1.3, E = 6.4
CS EEEEEESS-GGGS-TTH
*->PmftvdTNlPansVPag<-*
++v+TN+P +s+P++
gi|1134742 378 --VEVETNVP-DSIPSD 391
Clenterotox: domain 1 of 1, from 383 to 413: score 1.4, E = 3.7
*->nipdivnnnpayiLftvnttnvYkinaknNl<-*
n+pd++ + p+yiL+ n + + l
gi|1134742 383 NVPDSIPSDPIYILYNQNLSPAPDADQNTIL 413
CHRD: domain 1 of 2, from 430 to 473: score 22.3, E = 2.3e-05
*->etfsalLtGsd.devpPvntMgagGsAwltldtdctsLhYLsitlsG
++f+a L++s++d+v + a+G A+++l+ d t ++Y +i l+G
gi|1134742 430 QEFKAFLDSSQnDGV---ES-DATGIATFRLNADQTEIEY-TIELNG 471
Ls<-*
++
gi|1134742 472 ID 473
Rer1: domain 1 of 1, from 437 to 461: score 0.7, E = 7.9
*->ddsdgenggssAspVkkkfhelsql<-*
d+s+++++ s A+ +++++ + q+
gi|1134742 437 DSSQNDGVESDATGIATFRLNADQT 461
Corona_NS3b: domain 1 of 1, from 469 to 486: score 0.4, E = 2.9
*->LnEiDLKEEEGDRtYDvs<-*
Ln iDL E+ +Rt D +
gi|1134742 469 LNGIDLIEDPAERTADNA 486
DoxA: domain 1 of 1, from 556 to 581: score 0.6, E = 8
*->ktPklkityirlyedakngtLiLnitr<-*
k P+lki i +y d++ngtL ++ +
gi|1134742 556 KSPELKIEVIEAY-DNSNGTLGIKLQD 581
Peptidase_M6: domain 1 of 1, from 560 to 575: score -1.2, E = 6.3
*->LKikvlgQAkdgSagav<-*
LKi+v+ +A d+S g +
gi|1134742 560 LKIEVI-EAYDNSNGTL 575
DUF461: domain 1 of 1, from 596 to 607: score 5.4, E = 0.59
CS E--TTT..---EEE
*->LtFedgGrgtveve<-*
L+Fe+g +tve++
gi|1134742 596 LKFENG--TTVEFT 607
Pepsin-I3: domain 1 of 1, from 604 to 631: score 1.6, E = 8.2
CS HHHHHHHHHHHHHHTT------------
*->atFqkkvaaYkesvrnqlqqrvkslfgg<-*
++F ++++ ++e ++ +++ +v+ l g+
gi|1134742 604 VEFTENITIFQEFQEESSTAQVSLLEGD 631
DUF1759: domain 1 of 1, from 606 to 618: score 1.8, E = 2.3
*->FdGdvlkyysFiE<-*
F+ +++ +++F E
gi|1134742 606 FTENITIFQEFQE 618
CHRD: domain 2 of 2, from 658 to 684: score 17.4, E = 0.00048
*->lLlaGelyvnVhTka.nPeGEIRGqit<-*
+L +G+lyv+V+Tk+++ +G IRGqi+
gi|1134742 658 HLFHGNLYVQVQTKQnFDPGDIRGQIL 684
HemolysinCabind: domain 1 of 6, from 689 to 706: score 10.8, E = 0.043
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+a +D+L+Gg Gn ++
gi|1134742 689 LADAEDDVLSGGTGNELF 706
HDC: domain 1 of 1, from 734 to 762: score -1.4, E = 8.8
*->dkgSdLFiEDAgvweknDNpdGtRKtKEdl<-*
++ S+L ED +++ N dG +t Edl
gi|1134742 734 TSMSNLHREDNDLIIDV-NQDGSFQTAEDL 762
Fib_alpha: domain 1 of 1, from 801 to 818: score -0.2, E = 4.7
CS XXXXXXXXXXXXXXXXXX
*->kfvtgkaeeDlpdfqaRs<-*
++v+g++e+D + ++++
gi|1134742 801 DLVHGTSEDDIRQGKGGN 818
HemolysinCabind: domain 2 of 6, from 813 to 830: score 17.9, E = 0.00029
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G +GnD+++G +GnD l
gi|1134742 813 QGKGGNDVISGFGGNDEL 830
HemolysinCabind: domain 3 of 6, from 831 to 848: score 20.1, E = 6.3e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yG+ G+D L Gg+GnD+l
gi|1134742 831 YGNRGDDLLKGGDGNDIL 848
HemolysinCabind: domain 4 of 6, from 849 to 866: score 21.6, E = 2.2e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG nDtL G++GnDtl
gi|1134742 849 KGGYENDTLKGNSGNDTL 866
Photo_RC: domain 1 of 1, from 865 to 877: score 1.7, E = 2.2
CS TSSCTSC-SEETT
*->tlvGwfGFDfqvG<-*
tl+Gw GFD +G
gi|1134742 865 TLIGWQGFDILLG 877
HemolysinCabind: domain 5 of 6, from 867 to 884: score 8.9, E = 0.16
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G D+L Gg+G D l
gi|1134742 867 IGWQGFDILLGGSGEDNL 884
HemolysinCabind: domain 6 of 6, from 885 to 902: score 13.0, E = 0.0092
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG G+D+L+Gg+ +D+l
gi|1134742 885 KGGIGRDRLNGGKDDDLL 902
DUF2587: domain 1 of 1, from 925 to 940: score -1.5, E = 9
*->gpdgladlveqPaKvm<-*
g d+++d+v+ P+K++
gi|1134742 925 GVDEITDFVSGPDKII 940
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