hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 113474296.fa
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Query sequence: gi|113474296|ref|YP_720357.1|
Accession: [none]
Description: hemolysin-type calcium-binding region [Trichodesmium erythraeum IMS101]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HemolysinCabind Hemolysin-type calcium-binding repeat 92.3 8.1e-27 6
CHRD CHRD domain 40.3 3.1e-10 2
Clenterotox Clostridium enterotoxin 6.3 0.15 1
Glyco_hydro_68 Levansucrase/Invertase 2.4 0.58 1
SURF2 Surfeit locus protein 2 (SURF2) 4.5 0.6 1
Ribosomal_S10 Ribosomal protein S10p/S20e 4.4 2 1
Photo_RC Photosynthetic reaction centre protei 1.7 2.2 1
DUF1400 Alpha/beta hydrolase of unknown funct 2.1 3.6 1
HasA Heme-binding protein A (HasA) 2.0 4 1
Fib_alpha Fibrinogen alpha chain -0.2 4.7 1
DUF1475 Protein of unknown function (DUF1475) -0.6 6.4 1
SMC_hinge SMC proteins Flexible Hinge Domain 1.3 8.7 1
HDC Histidine carboxylase PI chain -1.4 8.8 1
COesterase Carboxylesterase -2.0 8.9 1
DUF2587 Protein of unknown function (DUF2587) -1.5 9 1
GalP_UDP_tr_C Galactose-1-phosphate uridyl transfer 0.8 9.3 1
Bundlin Bundlin 0.6 9.3 1
Arch_fla_DE Archaeal flagella protein 0.5 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF1400 1/1 65 78 .. 122 135 .] 2.1 3.6
Clenterotox 1/1 384 414 .. 168 198 .] 6.3 0.15
DUF1475 1/1 390 420 .. 227 257 .] -0.6 6.4
HasA 1/1 407 416 .. 208 217 .] 2.0 4
SURF2 1/1 426 437 .. 1 12 [. 4.5 0.6
CHRD 1/2 431 493 .. 1 59 [. 18.7 0.00022
Bundlin 1/1 475 488 .. 84 97 .] 0.6 9.3
GalP_UDP_tr_C 1/1 477 496 .. 202 221 .] 0.8 9.3
COesterase 1/1 507 589 .. 509 591 .] -2.0 8.9
Ribosomal_S10 1/1 575 606 .. 70 101 .] 4.4 2
Glyco_hydro_68 1/1 608 629 .. 477 498 .] 2.4 0.58
CHRD 2/2 645 679 .. 97 131 .] 21.6 3.5e-05
SMC_hinge 1/1 676 691 .. 109 124 .] 1.3 8.7
HemolysinCabind 1/6 684 701 .. 1 18 [] 10.8 0.043
Arch_fla_DE 1/1 713 720 .. 104 111 .] 0.5 10
HDC 1/1 729 757 .. 215 244 .. -1.4 8.8
Fib_alpha 1/1 796 813 .. 480 497 .] -0.2 4.7
HemolysinCabind 2/6 808 825 .. 1 18 [] 17.9 0.00029
HemolysinCabind 3/6 826 843 .. 1 18 [] 20.1 6.3e-05
HemolysinCabind 4/6 844 861 .. 1 18 [] 21.6 2.2e-05
Photo_RC 1/1 860 872 .. 1 13 [. 1.7 2.2
HemolysinCabind 5/6 862 879 .. 1 18 [] 8.9 0.16
HemolysinCabind 6/6 880 897 .. 1 18 [] 13.0 0.0092
DUF2587 1/1 920 935 .. 1 16 [. -1.5 9
Alignments of top-scoring domains:
DUF1400: domain 1 of 1, from 65 to 78: score 2.1, E = 3.6
*->svlqaYPgpslrln<-*
++l +YP+ sl++
gi|1134742 65 ELLSNYPTNSLHIV 78
Clenterotox: domain 1 of 1, from 384 to 414: score 6.3, E = 0.15
*->nipdivnnnpayiLftvnttnvYkinaknNl<-*
nipd++ + p+yiL+ n + + + l
gi|1134742 384 NIPDSIPSDPVYILYNQNLSAAPDVDQDTIL 414
DUF1475: domain 1 of 1, from 390 to 420: score -0.6, E = 6.4
*->PLDPLYLvLvaklkvkadlverlmsaalrir<-*
P DP+Y+ +l + d+ + + aa+ +
gi|1134742 390 PSDPVYILYNQNLSAAPDVDQDTILAAQNYL 420
HasA: domain 1 of 1, from 407 to 416: score 2.0, E = 4
CS ----------
*->dvaqDlaLAA<-*
dv+qD LAA
gi|1134742 407 DVDQDTILAA 416
SURF2: domain 1 of 1, from 426 to 437: score 4.5, E = 0.6
*->MdElpkDvkAFL<-*
M E++ + kAFL
gi|1134742 426 MTEPAQEFKAFL 437
CHRD: domain 1 of 2, from 431 to 493: score 18.7, E = 0.00022
*->etfsalLtGsddevpPvntMgagGsAwltldtdctsLhYLsitlsGL
++f+a L++s+ + a+G+A+++l+ + t ++Y +i l+GL
gi|1134742 431 QEFKAFLDSSQ-NGV--DS-DATGLATFSLNAEQTEIEY-TIELNGL 472
s.......gp.dn.vtaahlh<-*
+ +++ +++ +n +t +h+h
gi|1134742 473 DliedpvkRTaENaITEIHFH 493
Bundlin: domain 1 of 1, from 475 to 488: score 0.6, E = 9.3
*->iPDnyKdakrtklt<-*
i D +K+++++ +t
gi|1134742 475 IEDPVKRTAENAIT 488
GalP_UDP_tr_C: domain 1 of 1, from 477 to 496: score 0.8, E = 9.3
CS ............SS-TTCCT
*->DPktaLedNkmaevHyewal<-*
DP +N ++e+H++ +
gi|1134742 477 DPVKRTAENAITEIHFHHRG 496
COesterase: domain 1 of 1, from 507 to 589: score -2.0, E = 8.9
CS HTTGHHH GHT .-HHHHHHHHHHHHHHHHHHHHHSSSTSCCSTT
*->vFGnpls.kly...sseeeemlssrrmmrywtnFAktGnPNngessg
vFG+p + ++ + +e e+++ + +nFA+++ P +
gi|1134742 507 VFGTPSEdDDNieiDYENERIIGKWDWSDAAANFARHSEP--KSDGV 551
CS SS---BB-TTTSEEEEECSSCEECSC EECCSCC ..HHHHH
lpkWppytseeqkYyllntllnittk.lreedPr.kvkcafw<-*
+W + + e +++ +n+++ + + d++++ k++++
gi|1134742 552 YGDWKAPKLE----IEVVEAYNNGALgIKLRDEEpEDKLNIF 589
Ribosomal_S10: domain 1 of 1, from 575 to 606: score 4.4, E = 2
*->ieiknlnaetaelflqliqlnlPeGVeievki<-*
i++++ ++e++ ++++ +qln+ +G +++++
gi|1134742 575 IKLRDEEPEDKLNIFEGTQLNFDNGARVKITE 606
Glyco_hydro_68: domain 1 of 1, from 608 to 629: score 2.4, E = 0.58
CS EEEETTEEEE-TTSTBTBT---
*->inlkGdrtfvvevkdteyGyip<-*
i + ++++ve++++e G+ip
gi|1134742 608 ITISKAKSSIVEASILEGGDIP 629
CHRD: domain 2 of 2, from 645 to 679: score 21.6, E = 3.5e-05
*->rllsaqelrlLlaGelyvnVhTkanPeGE.IRGqit<-*
++++ l +L +G+lyv+VhT +nPe +IRGq++
gi|1134742 645 TPVTTS-LFNLFHGNLYVQVHTNQNPEPGdIRGQVL 679
SMC_hinge: domain 1 of 1, from 676 to 691: score 1.3, E = 8.7
CS TTEEEESSHHHHHHHH
*->gqtlvVedldeArrla<-*
gq+l V +l++A++ +
gi|1134742 676 GQVLPVRTLADAEDDV 691
HemolysinCabind: domain 1 of 6, from 684 to 701: score 10.8, E = 0.043
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+a +D+L+Gg Gn ++
gi|1134742 684 LADAEDDVLSGGTGNELF 701
Arch_fla_DE: domain 1 of 1, from 713 to 720: score 0.5, E = 10
*->IErLaGrk<-*
IE+LaGr+
gi|1134742 713 IEELAGRE 720
HDC: domain 1 of 1, from 729 to 757: score -1.4, E = 8.8
*->dkgSdLFiEDAgvweknDNpdGtRKtKEdl<-*
++ S+L ED +++ N dG +t Edl
gi|1134742 729 TSMSNLHREDNDLIIDV-NQDGSFQTAEDL 757
Fib_alpha: domain 1 of 1, from 796 to 813: score -0.2, E = 4.7
CS XXXXXXXXXXXXXXXXXX
*->kfvtgkaeeDlpdfqaRs<-*
++v+g++e+D + ++++
gi|1134742 796 DLVHGTSEDDIRQGKGGN 813
HemolysinCabind: domain 2 of 6, from 808 to 825: score 17.9, E = 0.00029
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
G +GnD+++G +GnD l
gi|1134742 808 QGKGGNDVISGFGGNDEL 825
HemolysinCabind: domain 3 of 6, from 826 to 843: score 20.1, E = 6.3e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
yG+ G+D L Gg+GnD+l
gi|1134742 826 YGNRGDDLLKGGDGNDIL 843
HemolysinCabind: domain 4 of 6, from 844 to 861: score 21.6, E = 2.2e-05
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG nDtL G++GnDtl
gi|1134742 844 KGGYENDTLKGNSGNDTL 861
Photo_RC: domain 1 of 1, from 860 to 872: score 1.7, E = 2.2
CS TSSCTSC-SEETT
*->tlvGwfGFDfqvG<-*
tl+Gw GFD +G
gi|1134742 860 TLIGWQGFDILLG 872
HemolysinCabind: domain 5 of 6, from 862 to 879: score 8.9, E = 0.16
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
+G +G D+L Gg+G D l
gi|1134742 862 IGWQGFDILLGGSGEDNL 879
HemolysinCabind: domain 6 of 6, from 880 to 897: score 13.0, E = 0.0092
CS E--SSS-EEEEESSCGEE
*->yGGaGnDtLyGgaGnDtl<-*
GG G+D+L+Gg+ +D+l
gi|1134742 880 KGGIGRDRLNGGKDDDLL 897
DUF2587: domain 1 of 1, from 920 to 935: score -1.5, E = 9
*->gpdgladlveqPaKvm<-*
g d+++d+v+ P+K++
gi|1134742 920 GVDEITDFVSGPDKII 935
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